BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019312
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1
Length = 329
Score = 324 bits (830), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 215/306 (70%), Gaps = 23/306 (7%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
+K+KL+V+MGATGTGKS LSIDLA F P E+INSDKMQVYKGLDITTNKI R VP
Sbjct: 28 RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVP 86
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD-RGL 175
HHLLGE P E TP DFR A A+S+I R+K P+LVGGSNSFI++LLV +D G
Sbjct: 87 HHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP 146
Query: 176 SVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDR 235
VF++ S VSS LRY+CCFLWVD S+++L DYL KRVDDMLE GMF+ELAEF+ +
Sbjct: 147 GVFEEGSHS-VVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPED 205
Query: 236 MRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE---WDPVRRGVYQEA------ 286
++ + GL KAIGVPEF+RYF+ + P VE GE D VRRG ++EA
Sbjct: 206 EDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE--GEDPGRDRVRRGAFEEAVRAIKE 263
Query: 287 -------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIV 337
RQI KIL+L+ AGWDLRRLDAT +FR + D +C +WE+QV+EPSVKIV
Sbjct: 264 NTCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIV 323
Query: 338 KRFLDE 343
RFLDE
Sbjct: 324 SRFLDE 329
>sp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=IPT1 PE=1 SV=2
Length = 357
Score = 295 bits (754), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 215/325 (66%), Gaps = 29/325 (8%)
Query: 35 RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94
+R R + +++S + + ++KDK+VVI+GATG GKS LS+DLATRF PSEIINSDK+
Sbjct: 41 KRRRKHQPLVSSIRMEQSRSRNRKDKVVVILGATGAGKSRLSVDLATRF-PSEIINSDKI 99
Query: 95 QVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPL 154
QVY+GL+ITTN+I R VPHHLLG P+ E T +FR A N + +I SR+K P+
Sbjct: 100 QVYEGLEITTNQITLQDRRGVPHHLLGVINPEHGELTAGEFRSAASNVVKEITSRQKVPI 159
Query: 155 LVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDS--VSSSLRYNCCFLWVDSSLQLLYDYLN 212
+ GGSNSF+++LL Q +D D F S S +SS LRY CCF+WVD S +LY+YL
Sbjct: 160 IAGGSNSFVHALLAQRFDPKF----DPFSSGSCLISSDLRYECCFIWVDVSETVLYEYLL 215
Query: 213 KRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVK 272
+RVD+M++SGMFEEL+ F+D + + + G+ KAIGVPEF+ YFK YPP +K
Sbjct: 216 RRVDEMMDSGMFEELSRFYDPVK----SGLETRFGIRKAIGVPEFDGYFKEYPPEKKMIK 271
Query: 273 GEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRRLDATTAFR---MLVN 316
WD +R+ Y +A RQ+ KI L+ AGW++ R+DAT +F+ M +
Sbjct: 272 --WDALRKAAYDKAVDDIKRNTWTLAKRQVKKIEMLKDAGWEIERVDATASFKAVMMKSS 329
Query: 317 GDQEWRCVWERQVVEPSVKIVKRFL 341
+++WR WE QV+EPSVKIVKR L
Sbjct: 330 SEKKWRENWEEQVLEPSVKIVKRHL 354
>sp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis
thaliana GN=IPT8 PE=2 SV=1
Length = 330
Score = 291 bits (744), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 161/339 (47%), Positives = 214/339 (63%), Gaps = 31/339 (9%)
Query: 19 QQHYSSFYSPFLHP---KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGL 75
Q S+F SP + P R R ++V+ T T S K K+VVIMGATG+GKS L
Sbjct: 2 QNLTSTFVSPSMIPITSPRLRLPPPRSVVPMT--TVCMEQSYKQKVVVIMGATGSGKSCL 59
Query: 76 SIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDF 135
SIDLATRF EI+NSDK+Q Y GL +TTN++ +R VPHHLLGE PDD E T +F
Sbjct: 60 SIDLATRF-SGEIVNSDKIQFYDGLKVTTNQMSILERCGVPHHLLGELPPDDSELTTSEF 118
Query: 136 RLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNC 195
R A +IS+I +R P++ GGSNSFI++LLV +D F S+SS LRY C
Sbjct: 119 RSLASRSISEITARGNLPIIAGGSNSFIHALLVDRFDPKTYPFSSE---TSISSGLRYEC 175
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVP 255
CFLWVD S+ +L++YL+KRVD M+ESGMFEELA F+D R + S G+ K IG+P
Sbjct: 176 CFLWVDVSVSVLFEYLSKRVDQMMESGMFEELAGFYDP---RYSGSAIRAHGIHKTIGIP 232
Query: 256 EFERYFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWDL 302
EF+RYF +YPP + EWD R+G Y EA +QI++I+KL+ +GWD+
Sbjct: 233 EFDRYFSLYPPERKQKMSEWDQARKGAYDEAVQEIKENTWRLAKKQIERIMKLKSSGWDI 292
Query: 303 RRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
+RLDAT +F + R +W+ V++ S+K+VKRFL
Sbjct: 293 QRLDATPSF------GRSSREIWDNTVLDESIKVVKRFL 325
>sp|Q9C6L1|IPT6_ARATH Adenylate isopentenyltransferase 6, chloroplastic OS=Arabidopsis
thaliana GN=IPT6 PE=2 SV=1
Length = 342
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/321 (46%), Positives = 200/321 (62%), Gaps = 30/321 (9%)
Query: 44 MASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103
+ +T A + KDK+V+I G TGTGKS LS+DLATRFFP+EIINSDKMQ+YKG +I
Sbjct: 30 LVTTCMGHAGRKNIKDKVVLITGTTGTGKSRLSVDLATRFFPAEIINSDKMQIYKGFEIV 89
Query: 104 TNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFI 163
TN IP H++ VPHHLLG+F P D E TP +FR A +IS +IS KK P++VGGSNSF
Sbjct: 90 TNLIPLHEQGGVPHHLLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVVGGSNSFN 149
Query: 164 YSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGM 223
++LL + +D + F ++ S LRY CC LWVD +L+ +L RVD M+ESG+
Sbjct: 150 HALLAERFDPDIDPFSPGSSLSTICSDLRYKCCILWVDVLEPVLFQHLCNRVDQMIESGL 209
Query: 224 FEELAEFFDS--DRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRG 281
E+LAE +D D R +G+ K IGV EF+RYF++YP KG WD R+
Sbjct: 210 VEQLAELYDPVVDSGRR-------LGVRKTIGVEEFDRYFRVYPKEM--DKGIWDLARKA 260
Query: 282 VYQEA-------------RQIDKILKLERAGWDLRRLDATTAFRMLVNGD------QEWR 322
Y+E +Q +KI+KL R GW+++RLDAT A +N + R
Sbjct: 261 AYEETVKGMKERTCRLVKKQKEKIMKLIRGGWEIKRLDATAAIMAELNQSTAKGEGKNGR 320
Query: 323 CVWERQVVEPSVKIVKRFLDE 343
+WE+ +V+ SV+IVK+FL E
Sbjct: 321 EIWEKHIVDESVEIVKKFLLE 341
>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4
PE=1 SV=1
Length = 318
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 192/305 (62%), Gaps = 30/305 (9%)
Query: 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHH 118
DK+VVIMGATG+GKS LS+DLA F +EIINSDKMQ Y GL ITTN+ R VPHH
Sbjct: 5 DKMVVIMGATGSGKSSLSVDLALHF-KAEIINSDKMQFYDGLKITTNQSTIEDRRGVPHH 63
Query: 119 LLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVF 178
LLGE P+ E T +FR+ A AIS+I RKK P+L GGSNS+I++LL + YD F
Sbjct: 64 LLGELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKSYDPENYPF 123
Query: 179 DDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRN 238
D S+ S L+Y+CCF+W+D +L++YL+ R+D M++SGMFEE+AEF R+
Sbjct: 124 SDH--KGSICSELKYDCCFIWIDVDQSVLFEYLSLRLDLMMKSGMFEEIAEFH-----RS 176
Query: 239 NNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA------------ 286
+ +G+ KAIGV EF+ Y KMY + K WDP+R+ Y++A
Sbjct: 177 KKAPKEPLGIWKAIGVQEFDDYLKMYKWDNDMDK--WDPMRKEAYEKAVRAIKENTFQLT 234
Query: 287 -RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQE-------WRCVWERQVVEPSVKIVK 338
QI KI KL AGWD++++DAT +FR + +E R +W ++V+EP VKIV+
Sbjct: 235 KDQITKINKLRNAGWDIKKVDATASFREAIRAAKEGEGVAEMQRKIWNKEVLEPCVKIVR 294
Query: 339 RFLDE 343
LD+
Sbjct: 295 SHLDQ 299
>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis
thaliana GN=IPT3 PE=1 SV=1
Length = 336
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 185/294 (62%), Gaps = 31/294 (10%)
Query: 55 HSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHN 114
+ KDK+VVIMGATGTGKS LS+D+ATRF +EIINSDK+QV++GLDI TNKI S +
Sbjct: 37 YGPKDKVVVIMGATGTGKSRLSVDIATRF-RAEIINSDKIQVHQGLDIVTNKITSEESCG 95
Query: 115 VPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRG 174
VPHHLLG +P + + T ++ A+ +I +++R K P++VGGSNS++ +L+ +
Sbjct: 96 VPHHLLG-VLPPEADLTAANYCHMANLSIESVLNRGKLPIIVGGSNSYVEALVDDK---- 150
Query: 175 LSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSD 234
+++F S RY+CCFLWVD +L +L+ ++++RVD M+ESGM EE+ EFFD
Sbjct: 151 ----ENKFRS-------RYDCCFLWVDVALPVLHGFVSERVDKMVESGMVEEVREFFDF- 198
Query: 235 RMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE-----WDPVRRGVYQEA-RQ 288
+N+ S G+ KAIG PEF+R+F+ +VE + E + ++R ++ A RQ
Sbjct: 199 ---SNSDYSRGIK--KAIGFPEFDRFFRNEQFLNVEDREELLSKVLEEIKRNTFELACRQ 253
Query: 289 IDKILKLERA-GWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
+KI +L + W ++R+DAT F + WER V PS V RFL
Sbjct: 254 REKIERLRKVKKWSIQRVDATPVFTKR-RSKMDANVAWERLVAGPSTDTVSRFL 306
>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis
thaliana GN=IPT5 PE=1 SV=2
Length = 330
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 173/297 (58%), Gaps = 34/297 (11%)
Query: 53 PAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR 112
P +KDK+V +MGATGTGKS L+IDLATRF P+EI+NSDK+QVYKGLDI TNK+ +
Sbjct: 27 PFFRRKDKVVFVMGATGTGKSRLAIDLATRF-PAEIVNSDKIQVYKGLDIVTNKVTPEES 85
Query: 113 HNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD 172
VPHHLLG +FT +DF+ +A A+ I+ R + P++ GGSNS+I +L+
Sbjct: 86 LGVPHHLLGTVHDTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALV----- 140
Query: 173 RGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+D V LRYNCCFLWVD S +L+ ++++RVD M++ G+ +E+ FD
Sbjct: 141 -----------NDCVDFRLRYNCCFLWVDVSRPVLHSFVSERVDKMVDMGLVDEVRRIFD 189
Query: 233 SDRMRNNNSVSLGVGLLKAIGVPEFERYFKM----YPPASVE--VKGEWDPVRRGVYQEA 286
+S G+ +AIGVPE + + + YP + E ++ + ++ A
Sbjct: 190 P------SSSDYSAGIRRAIGVPELDEFLRSEMRNYPAETTERLLETAIEKIKENTCLLA 243
Query: 287 -RQIDKILKLERA-GWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
RQ+ KI +L + W++ R+DAT F + +E W+ V PS V++FL
Sbjct: 244 CRQLQKIQRLYKQWKWNMHRVDATEVF---LRRGEEADEAWDNSVAHPSALAVEKFL 297
>sp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis
thaliana GN=IPT7 PE=2 SV=2
Length = 329
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 161/293 (54%), Gaps = 34/293 (11%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K+K++ +MGATG+GKS L+IDLATRF EIINSDK+Q+YKGLD+ TNK+ + VPH
Sbjct: 33 KEKVIFVMGATGSGKSRLAIDLATRF-QGEIINSDKIQLYKGLDVLTNKVTPKECRGVPH 91
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSV 177
HLLG F + T + A AIS + + K P++ GGSNS+I +L+ + G +
Sbjct: 92 HLLGVFDSEAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALV--NHSSGFLL 149
Query: 178 FDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMR 237
+ Y+CCF+WVD SL +L +++KRVD M+E+G+ EE+ E F
Sbjct: 150 NN-------------YDCCFIWVDVSLPVLNSFVSKRVDRMMEAGLLEEVREVF------ 190
Query: 238 NNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEW-DPVRRGVYQE-----ARQIDK 291
N + VG+ +AIGVPE Y + K + D + + + RQ+ K
Sbjct: 191 -NPKANYSVGIRRAIGVPELHEYLRNESLVDRATKSKMLDVAVKNIKKNTEILACRQLKK 249
Query: 292 ILKLERAGW--DLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLD 342
I +L + W + R+DAT F L +E WE V PS +IV +F +
Sbjct: 250 IQRLHKK-WKMSMHRVDATEVF--LKRNVEEQDEAWENLVARPSERIVDKFYN 299
>sp|B9M3M9|MIAA2_GEOSF tRNA dimethylallyltransferase 2 OS=Geobacter sp. (strain FRC-32)
GN=miaA2 PE=3 SV=1
Length = 326
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 108/229 (47%), Gaps = 56/229 (24%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
+K KLV I+G T +GK+ L++ LA RF EI+N+D MQVY+G+DI T K R V
Sbjct: 5 EKIKLVSIVGPTASGKTELAVRLAERF-DGEIVNADSMQVYRGMDIGTAKPSVSLRSRVT 63
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL---------- 166
HHL+ + V DV F+ DFR AD AI+DI SR K +VGG+ +I +L
Sbjct: 64 HHLI-DIVTPDVNFSASDFRRAADGAIADIHSRGKRVFIVGGTGLYIRALLQGLVDSPSG 122
Query: 167 ----------------------LVQEYD----------------RGLSVFDD------RF 182
L+ E D R L V+ +F
Sbjct: 123 DEQIRGELNELAKEIGNEGLLQLLAEVDPITAERLHHNDRVRIIRALEVYRQTGRPMSQF 182
Query: 183 DSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFF 231
+ + Y+C L ++ Q LY + KRVD+M+ESG+ E+ E F
Sbjct: 183 RQEHGFAEEMYDCLMLGINVERQELYSRVEKRVDEMVESGLAAEVEELF 231
>sp|P07884|MOD5_YEAST tRNA dimethylallyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOD5 PE=1
SV=2
Length = 428
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 59/253 (23%)
Query: 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
K++VI G TG GKS LSI LA +F E+INSD MQVYK + I TNK P +R +PHH+
Sbjct: 15 KVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 73
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD------- 172
+ V E+ F + NAI DI R K P++VGG++ ++ +L + D
Sbjct: 74 MNH-VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 132
Query: 173 -----------------------------------------RGLSVF-------DDRFDS 184
R L ++ + F+
Sbjct: 133 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 192
Query: 185 DSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSL 244
++ L+++ FLW+ S + L+ L+ RVDDMLE G +E+ + ++
Sbjct: 193 QKIT--LKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQC 250
Query: 245 GVGLLKAIGVPEF 257
G+ + IG EF
Sbjct: 251 ENGVWQVIGFKEF 263
>sp|A7Z500|MIAA_BACA2 tRNA dimethylallyltransferase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=miaA PE=3 SV=1
Length = 314
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 126/274 (45%), Gaps = 72/274 (26%)
Query: 56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNV 115
+KK +V+++G T GK+ LSI LA + +EII+ D MQVYKG+DI T K+ + V
Sbjct: 3 NKKQPVVILVGPTAVGKTKLSIGLA-KMLNAEIISGDSMQVYKGMDIGTAKVTEEETEGV 61
Query: 116 PHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD--- 172
PHHL+ P D F+ D++ I++I R K P++VGG+ +I S+L YD
Sbjct: 62 PHHLIDILEPSDT-FSTADYQKMVRGKITEIADRGKLPMIVGGTGLYIQSVL---YDYTF 117
Query: 173 ---RGLSVFDDRFD--------------------------------------------SD 185
G VF +R +
Sbjct: 118 TENSGDPVFRERMEKLAAEEGAEALHAKLAAADPEAAAAIHQNNTRRVIRALEILHVSGK 177
Query: 186 SVSSSLR-------YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRN 238
++S L+ YN + + ++LY +N+RVD MLE+G+ +E+ +D + +R+
Sbjct: 178 TMSEHLKTQKRELLYNAVLIGLTMDREVLYGRINERVDLMLETGLLDEVKRLYDMN-IRD 236
Query: 239 NNSVSLGVGLLKAIGVPEFERYF--KMYPPASVE 270
+ S+ +AIG E Y K+ P +VE
Sbjct: 237 SQSI-------QAIGYKELYEYLDGKVPLPQAVE 263
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Query: 64 IMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEF 123
IMG TG+GKS L++DLA+ F P EIIN+D MQ+Y GLD+ TNK+ ++ VPHHLLG
Sbjct: 25 IMGPTGSGKSKLAVDLASHF-PVEIINADAMQIYSGLDVLTNKVTVDEQKGVPHHLLGT- 82
Query: 124 VPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
V D+EFT DFR I +I+SR P+LVGG++ +I +++
Sbjct: 83 VSSDMEFTARDFRDFTVPLIEEIVSRNHIPVLVGGTHYYIQAVV 126
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 55/189 (29%)
Query: 192 RYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD--SDRMRNNNSVSLGVGLL 249
R++ C + +D+ +L Y+ +RVD M+++G+ +E+ + + +D R GL
Sbjct: 223 RFDYCLICMDAETAVLDRYVEQRVDAMVDAGLLDEVYDIYKPGADYTR---------GLR 273
Query: 250 KAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILK----------LERA- 298
++IGV EFE + K++ S G + + KIL LE A
Sbjct: 274 QSIGVREFEDFLKIH--LSETCAGHLTSLSNDDKVMKENLRKILNFPKDDKLRIMLEEAI 331
Query: 299 -------------------------GWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPS 333
GW++ +DAT +++ +E W QVV+P+
Sbjct: 332 DRVKLNTRRLLRRQKRRVSRLETVFGWNIHYIDAT---EYILSKSEE---SWNAQVVKPA 385
Query: 334 VKIVKRFLD 342
+I++ FL+
Sbjct: 386 SEIIRCFLE 394
>sp|B1MXL9|MIAA_LEUCK tRNA dimethylallyltransferase OS=Leuconostoc citreum (strain KM20)
GN=miaA PE=3 SV=1
Length = 294
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 54/247 (21%)
Query: 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
K+VVI G T +GKS L+I +A RF EI+++D MQ+Y+GLDI T K+ +R VPHHL
Sbjct: 3 KIVVIAGPTASGKSDLAISVAQRF-NGEIVSADAMQIYRGLDIGTAKVTKAERELVPHHL 61
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQ---------E 170
+ + V +F+ +F +AD I+DI R K P++ GG+ ++ +LL Q E
Sbjct: 62 I-DIVDMTDKFSVAEFVTRADQVINDIAKRGKLPVIAGGTGFYVKALLGQQPLDFVASDE 120
Query: 171 YDRGL-----------------SVFDDRFDSDSVSSSLR------------------YNC 195
+ L ++ R D ++ +R Y+
Sbjct: 121 AEVALLKQKSLPTLVTMLKAADTILASRVDLNNKQRVIRAIQIARHGKRQEDISRPTYDA 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVP 255
+ +D ++LY+ +N+R ML+ G+ E+ S+ G KAIG
Sbjct: 181 LIVGIDWPREILYERINRRAQKMLDDGLLSEVEHIMSV----GGESIQAG----KAIGYK 232
Query: 256 EFERYFK 262
EF Y +
Sbjct: 233 EFFPYIR 239
>sp|Q04FB0|MIAA_OENOB tRNA dimethylallyltransferase OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=miaA PE=3 SV=1
Length = 257
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K+K+VVI G T +GKS L+I +A + SEII+ D Q+Y+GLDI T K V H
Sbjct: 7 KEKVVVIAGPTASGKSDLAIKIA-QMIDSEIISEDAFQIYRGLDIGTAKPSKDDLAKVKH 65
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSV 177
H + + D ++ +F A I+ I S+KK PL+VGGS F+ +LL DR +S
Sbjct: 66 HFI-DIKEVDESYSAYEFARDARIVINQISSKKKIPLIVGGSGFFLQTLLG---DRRISD 121
Query: 178 FDDRFDSDSVSSSLR-YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRM 236
D+ R YN + +++ LYD +N+RV+ M E G+ +E F R
Sbjct: 122 KDNPIVPKKAGIENRLYNALLIGLNTERSQLYDRINQRVERMFEKGIVKEAENLF---RQ 178
Query: 237 RNNNSVSLGVGLLKAIGVPEFERYF-KMYPPASVEV 271
+ N KAIG EF YF Y + VE
Sbjct: 179 QGNFQSK------KAIGYREFAGYFANQYDLSEVET 208
>sp|Q03VI2|MIAA_LEUMM tRNA dimethylallyltransferase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=miaA PE=3
SV=1
Length = 297
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 55/249 (22%)
Query: 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHH 118
+K+VV+ G T +GKS LSI +A R EI+++D MQ+Y+ LD+ T K+ +++ VPHH
Sbjct: 2 NKIVVLTGPTASGKSSLSIQMAQRL-NGEIVSADSMQIYRNLDVGTAKVTKEEQNIVPHH 60
Query: 119 LLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL-VQEYDRGLSV 177
L+ + V ++ DF + AD I+DIISR K P++VGG+ ++ +LL QE + S
Sbjct: 61 LI-DIVDLTANYSVGDFIIAADKVIADIISRGKLPIIVGGTGLYVKALLGFQELEYAASD 119
Query: 178 FDD-----RFDSDSVSSSL---------------------------------------RY 193
++ ++ D + L +Y
Sbjct: 120 TEEVHKLNAYELDKLVVELKSLDINRAQKVDLKNKQRVIRAIQIAKYGKKDAKLTQRPKY 179
Query: 194 NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIG 253
+ + +D +LLY+ +N RV M++ G+ +E D+ + + KAIG
Sbjct: 180 DALVIGLDWPRELLYERINHRVTQMVQDGVLKEAQTILDAGGEKLQSG--------KAIG 231
Query: 254 VPEFERYFK 262
EF Y +
Sbjct: 232 YKEFFPYLR 240
>sp|B7GIA2|MIAA_ANOFW tRNA dimethylallyltransferase OS=Anoxybacillus flavithermus (strain
DSM 21510 / WK1) GN=miaA PE=3 SV=1
Length = 311
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 60/253 (23%)
Query: 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHH 118
+K+VV++G T GK+ +SI LA R EIIN D MQVYKGLDI T KI + +PHH
Sbjct: 3 EKVVVLIGPTAVGKTKMSIQLAKRL-NGEIINGDSMQVYKGLDIGTAKIRQEETEGIPHH 61
Query: 119 LLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLV---------- 168
LL P + F+ +F+ A + I DI R K P++VGG+ +I S++
Sbjct: 62 LLDIKEPHE-SFSVAEFQTLARSLIKDITKRGKLPIIVGGTGLYIQSVIYDYQFSDAPSN 120
Query: 169 ----QEYDR--------GLSVFD----DRFDSDSVSSSLR-------------------- 192
Q +R L D +R ++V +R
Sbjct: 121 DLYRQSLERCSPDELYEQLKQIDPLSAERIHPNNVRRVIRALEIYHCTGKTMTEWLKEQK 180
Query: 193 ----YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGL 248
YN + + + LY +N+RVD M++ G+ EE+ ++ +R+ ++
Sbjct: 181 RQLVYNVALIGLTMEREKLYARINQRVDQMIDQGLIEEVKRLYEQG-LRDCQAI------ 233
Query: 249 LKAIGVPEFERYF 261
+AIG E YF
Sbjct: 234 -QAIGYKELYAYF 245
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
GN=Trit1 PE=2 SV=2
Length = 467
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
LVVI+GATGTGKS L++ L R EI+++D MQVY+GLDI TNK+ + ++ HH++
Sbjct: 25 LVVILGATGTGKSTLALQLGQRL-GGEIVSADSMQVYEGLDIITNKVSAQEQKMCQHHMI 83
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
P +T DFR +A I DI +R K P++VGG+N +I SLL
Sbjct: 84 SFVDPLVTSYTVVDFRNKATALIEDIFARDKIPIVVGGTNYYIESLL 130
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 194 NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRN--NNSVSLGVGLLKA 251
N C LW+ + +L + L+KRVDDML +G+ EEL F ++N NS G+ ++
Sbjct: 223 NPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRGFHRRYNLKNISENSQDYQHGIFQS 282
Query: 252 IGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRL------ 305
IG EF Y + E + +++G+ + +Q+ K ++ W R
Sbjct: 283 IGFKEFHEYLTTEGKCTPETSNQL--LKKGI-EALKQVTKRYARKQNRWVKNRFLSRPGP 339
Query: 306 DATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
+ + V+ + WE V+EP++ IV+ F+
Sbjct: 340 SVPPVYGLEVSDVSK----WEESVLEPALNIVQSFI 371
>sp|Q39TZ3|MIAA_GEOMG tRNA dimethylallyltransferase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=miaA PE=3 SV=1
Length = 309
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 100/225 (44%), Gaps = 56/225 (24%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
+K +LV++ G T +GKS L+++LA R EI+N+D MQVY+G+DI T K +R VP
Sbjct: 5 EKTRLVIVQGPTASGKSALALELAERI-GGEIVNADSMQVYRGMDIGTAKPSQEERRRVP 63
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL---LV----- 168
HHL + V V FT DFR A AI+DI R K +LVGG+ +I L LV
Sbjct: 64 HHLY-DIVDPKVNFTAADFREHASRAIADIERRGKRVILVGGTGLYIRILTQGLVASPGG 122
Query: 169 ----------QEYDRGLSVFDDRFDSDSVSSSLR-------------------------- 192
Q + GL R + ++ R
Sbjct: 123 DDNIRRELEDQAHGEGLESLHRRLAAVDPVAAARLHPNDGVRIVRALEVFLLTGRPLSAF 182
Query: 193 ----------YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEEL 227
Y C L + +LLY + +RVD M+ G+ EE+
Sbjct: 183 QEAHRFADEPYRCLKLGITVERELLYRRVEERVDRMIAEGLVEEV 227
>sp|A5GEV6|MIAA2_GEOUR tRNA dimethylallyltransferase 2 OS=Geobacter uraniireducens (strain
Rf4) GN=miaA2 PE=3 SV=1
Length = 310
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K KL++I+G T +GK+ L++ LA RF EI+N+D MQVY+G+DI T K R VPH
Sbjct: 7 KIKLIIIVGPTASGKTELAVRLAERF-DGEIVNADSMQVYRGMDIGTAKPSPQLRQRVPH 65
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
HL+ + V DV F+ DFR +A AI DI SR K+ +VGG+ +I +LL
Sbjct: 66 HLV-DIVTPDVNFSAADFRREAAAAIDDIHSRGKSVFVVGGTGLYIRALL 114
>sp|A5CSL4|MIAA_CLAM3 tRNA dimethylallyltransferase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=miaA PE=3 SV=1
Length = 307
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 5/111 (4%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFP----SEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
+V ++GATGTGKSGLS+D+A R +EI+N+D MQ+Y+G+DI T K+P R +VP
Sbjct: 4 IVAVVGATGTGKSGLSLDIADRLRAQGRVAEIVNADAMQLYRGMDIGTAKLPEAARRDVP 63
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
HH+L + + E T ++ +A I+ I+ R P+LVGGS ++ S+L
Sbjct: 64 HHML-DVLDVTAEATVAGYQGEARRVITGILGRGAVPILVGGSGLYVSSVL 113
>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
GN=TRIT1 PE=1 SV=1
Length = 467
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
LVVI+GATGTGKS L++ L R EI+++D MQVY+GLDI TNK+ + ++ HH++
Sbjct: 25 LVVILGATGTGKSTLALQLGQRL-GGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMI 83
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
P +T DFR +A I DI +R K P++VGG+N +I SLL
Sbjct: 84 SFVDPLVTNYTVVDFRNRATALIEDIFARDKIPIVVGGTNYYIESLL 130
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 194 NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRN--NNSVSLGVGLLKA 251
N C LW+ + +L + L+KRVDDML +G+ EEL +F +N NS G+ ++
Sbjct: 223 NPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQDYQHGIFQS 282
Query: 252 IGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTA- 310
IG EF Y ++E + +++G+ + +Q+ K ++ W R +
Sbjct: 283 IGFKEFHEYLITEGKCTLETSNQL--LKKGI-EALKQVTKRYARKQNRWVKNRFLSRPGP 339
Query: 311 -----FRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
+ + V+ + WE V+EP+++IV+ F+
Sbjct: 340 IVPPVYGLEVSDVSK----WEESVLEPALEIVQSFI 371
>sp|Q9CHU2|MIAA_LACLA tRNA dimethylallyltransferase OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=miaA PE=3 SV=1
Length = 294
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 65/253 (25%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
K +K++V++G T GK+ L IDLA +F EII+ D QVY+GLDI T K+ ++ VP
Sbjct: 2 KNNKVLVVVGPTAVGKTALGIDLAIKF-NGEIISGDSQQVYQGLDIGTAKVTMAEQAQVP 60
Query: 117 HHLLGEFVPDDV-----EFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY 171
HHL+ DV F+ DF ++A+ I +I+ + K P++VGG+ +I S L++ Y
Sbjct: 61 HHLI------DVRKWTENFSVHDFVIEANQLIKEILDQGKVPIIVGGTGLYIQS-LIEGY 113
Query: 172 DRG--------------LSVFDDR-----------------------------FDSDSVS 188
G LS+ D F S +
Sbjct: 114 HLGGQENHEEMMKLREELSLLSDEELFAKVIKINPDISELNRRRAIRFLELQTFGSQDEN 173
Query: 189 SSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGL 248
Y+ + +++ ++LYD +N+RVD M+ G+ +E ++ + V
Sbjct: 174 LGSDYDFLLIGLNADRKVLYDRINQRVDQMMREGLLDEARTLYEQ---------APEVQA 224
Query: 249 LKAIGVPEFERYF 261
K IG EF YF
Sbjct: 225 AKGIGYKEFFPYF 237
>sp|B5XL33|MIAA_STRPZ tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=miaA PE=3 SV=1
Length = 299
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVN 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RVD MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVDRMLENGLLEE 211
>sp|P0DC33|MIAA_STRPQ tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=miaA PE=3 SV=1
Length = 299
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RVD MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVDRMLENGLLEE 211
>sp|P65358|MIAA_STRP8 tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M18 (strain MGAS8232) GN=miaA PE=3 SV=1
Length = 299
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RVD MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVDRMLENGLLEE 211
>sp|P0DC32|MIAA_STRP3 tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=miaA PE=3 SV=1
Length = 299
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RVD MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVDRMLENGLLEE 211
>sp|B0RGZ2|MIAA_CLAMS tRNA dimethylallyltransferase OS=Clavibacter michiganensis subsp.
sepedonicus (strain ATCC 33113 / JCM 9667) GN=miaA PE=3
SV=1
Length = 307
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFP----SEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
+V ++GATGTGKS LS+D+A R +EI+N+D MQ+Y+G+DI T K+P R VP
Sbjct: 4 IVAVVGATGTGKSALSLDIAERLRAEGRAAEIVNADAMQLYRGMDIGTAKLPEVGRRGVP 63
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD 172
HH+L + + E T ++ +A AI I+ R P+LVGGS ++ S+L +YD
Sbjct: 64 HHML-DVLDVTAEATVAAYQEEARRAIGGILERGAVPILVGGSGLYVSSVLF-DYD 117
>sp|Q48TZ1|MIAA_STRPM tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M28 (strain MGAS6180) GN=miaA PE=3 SV=1
Length = 299
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 98/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLT-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RVD MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVDRMLENGLLEE 211
>sp|Q6G9R0|MIAA_STAAS tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=miaA PE=3 SV=1
Length = 311
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
+VVI+G T +GK+ LSI+LA R EII+ D MQVYK ++I T K+ + +PHHL+
Sbjct: 8 IVVIVGPTASGKTELSIELAKRI-NGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLI 66
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL------------- 167
PDD F+ +F+ A++ I+DI +R K P++ GG+ +I SL+
Sbjct: 67 DILNPDDT-FSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPA 125
Query: 168 -----------------------VQEYD-------------RGLSVFDDRFDSDSVSSSL 191
+ ++D RGL + + + S+
Sbjct: 126 QLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRGLRAIEYYLKTKKLLSNR 185
Query: 192 R--------YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ Y+ L ++ S + LY +NKRVD ML+ G+F E+ + +
Sbjct: 186 KKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVE 234
>sp|Q6GHD2|MIAA_STAAR tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=miaA PE=3 SV=1
Length = 311
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
+VVI+G T +GK+ LSI+LA R EII+ D MQVYK ++I T K+ + +PHHL+
Sbjct: 8 IVVIVGPTASGKTELSIELAKRI-NGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLI 66
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL------------- 167
G PDD F+ +F+ A++ I+DI +R K P++ GG+ +I SL+
Sbjct: 67 GILNPDDT-FSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPA 125
Query: 168 ----VQEYDRGLSVFDD--------RFDSDS-----------VSSSLRY----------- 193
V++ L D+ +FD S V ++ Y
Sbjct: 126 QLSVVKQKLSALEHLDNQQLHEYLAQFDEASAKNIHPNNRQRVLRAIEYYFKTKKLLSNR 185
Query: 194 ----------NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ + ++ S + LY +NKRVD ML+ G+F E+ + +
Sbjct: 186 KKVQQFTENYDTLLIGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVE 234
>sp|Q8CQL3|MIAA_STAES tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=miaA PE=1 SV=1
Length = 332
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
L+VI+G T +GK+ LSI++A +F EII+ D MQVY+G+DI T K+ + + +PH+++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKF-NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMI 67
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDD 180
+ +P D F+ +F+ +A+ I DI R K P++ GG+ +I SLL S+ +D
Sbjct: 68 -DILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISED 126
Query: 181 R-------------------------FDSDSVSS-------------------------- 189
+ FD +S
Sbjct: 127 KMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSR 186
Query: 190 ------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ Y+ + ++ S + LY +NKRVD ML G+F E+ +
Sbjct: 187 KKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVE 235
>sp|Q5HPN8|MIAA_STAEQ tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=miaA PE=3 SV=1
Length = 332
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
L+VI+G T +GK+ LSI++A +F EII+ D MQVY+G+DI T K+ + + +PH+++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKF-NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMI 67
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDD 180
+ +P D F+ +F+ +A+ I DI R K P++ GG+ +I SLL S+ +D
Sbjct: 68 -DILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISED 126
Query: 181 R-------------------------FDSDSVSS-------------------------- 189
+ FD +S
Sbjct: 127 KMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSR 186
Query: 190 ------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ Y+ + ++ S + LY +NKRVD ML G+F E+ +
Sbjct: 187 KKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVE 235
>sp|Q4L610|MIAA_STAHJ tRNA dimethylallyltransferase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=miaA PE=3 SV=1
Length = 332
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
LVVI+G T +GK+ LSI+LA + EII+ D MQVYK +DI T K+ + + +PH+++
Sbjct: 9 LVVIVGPTASGKTELSIELAKQI-NGEIISGDSMQVYKQMDIGTAKVTNEEMDGIPHYMI 67
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLV------------ 168
PDD F+ DF+L+A I DI SR K P++ GG+ +I SL+
Sbjct: 68 DILNPDD-SFSVYDFKLRAQALIEDITSRGKIPIIAGGTGLYIQSLIYDYPFDDETVSKE 126
Query: 169 -----------------QEYDRGLSVFDDR--------------------FDSDSVSSSL 191
QE L+ FD + ++ + SS
Sbjct: 127 VEQKTQLQLQKLEPLTNQEVHDYLATFDPQSAKDIHPNNRKRVLRAIEYYLNTKKLISSR 186
Query: 192 R--------YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ Y+ + ++ S + LY +NKRVD ML G+F E+ +
Sbjct: 187 KKVQQFTENYDTLLIGIEMSRKTLYSRINKRVDIMLGHGLFNEVKNLVE 235
>sp|A2REY5|MIAA_STRPG tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=miaA PE=3 SV=1
Length = 299
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RV+ MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVNRMLENGLLEE 211
>sp|Q1JM45|MIAA_STRPC tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M12 (strain MGAS9429) GN=miaA PE=3 SV=1
Length = 299
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RV+ MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVNRMLENGLLEE 211
>sp|Q1JC62|MIAA_STRPB tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M12 (strain MGAS2096) GN=miaA PE=3 SV=1
Length = 299
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A AISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RV+ MLE+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVNRMLENGLLEE 211
>sp|A1SNF6|MIAA_NOCSJ tRNA dimethylallyltransferase OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=miaA PE=3 SV=1
Length = 310
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 51 PAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSH 110
P P + +V ++GAT +GK+GLS+DLA R EI+N+D MQVY+G+DI T K+P
Sbjct: 3 PTP---NRTPIVAVVGATASGKTGLSLDLAERLR-GEIVNTDAMQVYRGMDIGTAKLPVA 58
Query: 111 KRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
+R +PHHLL D T +F+ A I++I R +TP+LVGGS + ++L
Sbjct: 59 ERRGIPHHLLDTLTVRD-PATVAEFQSWARAEIAEIRGRGRTPVLVGGSALYTRAIL 114
>sp|B1HRH3|MIAA_LYSSC tRNA dimethylallyltransferase OS=Lysinibacillus sphaericus (strain
C3-41) GN=miaA PE=3 SV=1
Length = 300
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 12/136 (8%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
++ ++V I+G T +GK+ LSI+LA ++ EIIN D MQVYKGLDI T KI + VP
Sbjct: 7 QQAEVVAIVGPTASGKTALSIELAKKY-NGEIINGDSMQVYKGLDIGTAKITEEEMEGVP 65
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLS 176
HHLL F+ F+ D++ I+DI +R K P++VGGS ++ ++L
Sbjct: 66 HHLLS-FLEPTASFSVADYQKLVREKIADIQARHKLPIIVGGSGLYVQAVL--------- 115
Query: 177 VFDDRFDSDSVSSSLR 192
FD +F + V + R
Sbjct: 116 -FDFQFTDEKVDEAAR 130
>sp|Q38W03|MIAA_LACSS tRNA dimethylallyltransferase OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=miaA PE=3 SV=1
Length = 310
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 70/262 (26%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
KK+K++VI+G TG GK+ LS+ +A + EII+ D MQVY+ LDI T K+ ++ P
Sbjct: 2 KKEKIIVIVGPTGVGKTALSLQVAQQL-KGEIISGDAMQVYRHLDIGTAKVTPAEQAIAP 60
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLS 176
HHL+ + D FT +F+ Q I+ I R+ PL+VGG+ ++ +LL YD L
Sbjct: 61 HHLI-DVADIDERFTAFNFQQQGQQLITKITDRQHLPLIVGGTGLYLQALL---YDMTLG 116
Query: 177 VFDD----------------------------RFDSDSVS-------------------- 188
D + D D+ +
Sbjct: 117 SATDAEQDFSIRNKWQAYLEQHSETDLWQALAKIDPDAAAKIPAANTRRVIRALEVYETT 176
Query: 189 ---------SSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNN 239
LRY+ + ++ +LY+ +N+RVD M+++G+ EE A + R +
Sbjct: 177 GVLFSQQKPKELRYDTFIIGLNCERPVLYERINQRVDQMVDAGLIEE-ARWAYERRATSP 235
Query: 240 NSVSLGVGLLKAIGVPEFERYF 261
+V + IG EF YF
Sbjct: 236 QAV-------RGIGYKEFFPYF 250
>sp|B5EGD5|MIAA1_GEOBB tRNA dimethylallyltransferase 1 OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=miaA1 PE=3 SV=1
Length = 306
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 52/221 (23%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
KK K++V+ G TG+GKS L++ LA EI+N+D MQVY+ LDI T K + VP
Sbjct: 6 KKIKVIVLGGPTGSGKSDLAVKLAEEI-GGEIVNADSMQVYRRLDIGTAKPSAADLARVP 64
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLV-------- 168
HHL+ P++ +FT DFR +A AI+DI R K ++VGG+ +I +LL
Sbjct: 65 HHLIDILDPNE-DFTASDFRREATAAIADIERRGKRAIVVGGTGLYIRALLYGLVDSPTG 123
Query: 169 -------------QEYDRGLSVFD----------DR-------------------FDSDS 186
+E R LS+ D DR F S+
Sbjct: 124 DPELRRQFDDVPGEELLRRLSLVDPETAARLHPNDRVRLIRALEVYTQTGRPVSAFRSEH 183
Query: 187 VSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEEL 227
S + Y + + Q LY ++ RV+ MLE G+ EE+
Sbjct: 184 AFSDVHYQVLKMAIRVERQELYRRIDLRVEKMLEDGLVEEV 224
>sp|Q5M430|MIAA_STRT2 tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=miaA PE=3 SV=2
Length = 299
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 46/219 (21%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K KL+V+ G T GK+ L I+LA RF EII+ D QVY+ L+I T K ++ H
Sbjct: 2 KTKLIVVAGPTAVGKTALGIELAERF-NGEIISGDSQQVYRQLNIGTAKATPEEQAAAVH 60
Query: 118 HLLGEFVPD-DVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL--------- 167
HL+ V D D ++ DF +A AI+DI+SR K P++VGG+ ++ SLL
Sbjct: 61 HLID--VRDVDESYSAYDFVTEAQAAITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGKV 118
Query: 168 ----VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYN 194
V Y L D RF + ++ Y
Sbjct: 119 DQNQVLAYRSELEQLSDQQLFEKIDSLGIEIKEINRRRAIRALELYRFSDNLENTETCYE 178
Query: 195 CCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDS 233
+ +D L+YD +N RVD M+E G+ EE +D+
Sbjct: 179 PFIIGLDDERSLIYDRINTRVDKMVELGLLEEAKWLYDN 217
>sp|Q03KD9|MIAA_STRTD tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=miaA PE=3 SV=1
Length = 299
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 46/219 (21%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K KL+V+ G T GK+ L I+LA RF EII+ D QVY+ L+I T K ++ H
Sbjct: 2 KTKLIVVAGPTAVGKTALGIELAERF-NGEIISGDSQQVYRQLNIGTAKATPEEQAAAVH 60
Query: 118 HLLGEFVPD-DVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL--------- 167
HL+ V D D ++ DF +A AI+DI+SR K P++VGG+ ++ SLL
Sbjct: 61 HLID--VRDVDESYSAYDFVTEAQAAITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQV 118
Query: 168 ----VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYN 194
V Y L D RF + ++ Y
Sbjct: 119 DQNQVLAYRSELEQLSDQQLFEKIDSLGIEIKEINRRRAIRALELYRFSDNLENTETCYE 178
Query: 195 CCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDS 233
+ +D L+YD +N RVD M+E G+ EE +D+
Sbjct: 179 PFIIGLDDERSLIYDRINTRVDKMVELGLLEEAKWLYDN 217
>sp|A3CNS2|MIAA_STRSV tRNA dimethylallyltransferase OS=Streptococcus sanguinis (strain
SK36) GN=miaA PE=3 SV=1
Length = 294
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 101/212 (47%), Gaps = 46/212 (21%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K++VI+G T GK+ LSI++A RF +II+ D QVY+GLDI T KI ++ +PH
Sbjct: 2 KTKIIVIVGPTAVGKTALSIEVAKRF-NGQIISGDSQQVYRGLDIGTAKIRPEEQEGIPH 60
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSV 177
HLL + ++ DF +A AI +I ++ + P++ GG+ +I SLL + Y G SV
Sbjct: 61 HLL-DVREVGESYSAYDFVTEAAQAIREIAAQDQLPIICGGTGLYIQSLL-EGYHLGGSV 118
Query: 178 -----------FDDRFDSD---------------------------SVSSSLR-----YN 194
D D D + SL Y
Sbjct: 119 PHEEILAYRAQLDSWSDEDLFRKIAELGIEIPQLNRRRAMRALEIAHLGGSLENSQPDYE 178
Query: 195 CCFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ +D + LY+ +N RVD MLE+G+ EE
Sbjct: 179 ALLICLDDERERLYERINHRVDLMLEAGLLEE 210
>sp|Q5LZH6|MIAA_STRT1 tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=miaA PE=3 SV=2
Length = 299
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 46/219 (21%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K KL+V+ G T GK+ L I+LA RF EII+ D QVY+ L+I T K ++ H
Sbjct: 2 KTKLIVVAGPTAVGKTALGIELAERF-NGEIISGDSQQVYRQLNIGTAKATPEEQAAAVH 60
Query: 118 HLLGEFVPD-DVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL--------- 167
HL+ V D D ++ DF +A AI+DI+SR K P++VGG+ ++ SLL
Sbjct: 61 HLID--VRDVDESYSAYDFVTEAQAAITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGKV 118
Query: 168 ----VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYN 194
V Y L D RF + ++ Y
Sbjct: 119 DQNQVLAYRSELEQLSDQQLFEKIDSSGIEIKEINRRRAIRALELYRFSDNLENTETCYE 178
Query: 195 CCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDS 233
+ +D L+YD +N RVD M+E G+ EE +D+
Sbjct: 179 PFIIGLDDERSLIYDRINTRVDKMVELGLLEEAKWLYDN 217
>sp|B9EBJ1|MIAA_MACCJ tRNA dimethylallyltransferase OS=Macrococcus caseolyticus (strain
JCSC5402) GN=miaA PE=3 SV=1
Length = 312
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 60/240 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
L+VI+G T GK+ LSI++A + EII+ D +QVY+G+DI + KI + +PHHL+
Sbjct: 6 LIVIVGPTAVGKTALSIEIA-KAVNGEIISGDAIQVYRGMDIGSAKITQEEMEGIPHHLI 64
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD-------- 172
PD+ ++ F++ A+ I DI SR KTP++VGG+ +I S+L EY+
Sbjct: 65 DILNPDEA-YSAAQFKVHAEKLIEDIYSRGKTPMIVGGTGLYIQSVLY-EYEFVEEDQAL 122
Query: 173 ----------------------------------------RGLSVFD-------DRFDSD 185
R L+ ++ D+ S
Sbjct: 123 KKELMDHYESLDKETLYRLLTEKDTKAASQIHINNRQRVLRALTYYEMHHKSITDQKKSH 182
Query: 186 SVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLG 245
++SS +Y+ + ++ LYD +N+RV M+E G+ +E+ ++ + ++G
Sbjct: 183 TLSS--KYDTYIIGLNMPRPTLYDRINRRVLLMVEQGLVQEVETLISKGYRQSQSMTAIG 240
>sp|Q1JH90|MIAA_STRPD tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=miaA PE=3 SV=1
Length = 299
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A +ISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKSISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RV+ M+E+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVNRMIENGLLEE 211
>sp|Q9A059|MIAA_STRP1 tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M1
GN=miaA PE=3 SV=1
Length = 299
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 44/211 (20%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K K+VVI+G T GK+ L I LA + F EII+ D QVY+ LDI T K ++ H
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLA-KAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVH 61
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL---------- 167
HL+ + ++ DF A +ISDI+SR K P++VGG+ ++ SLL
Sbjct: 62 HLI-DIREVTESYSAYDFVQDAQKSISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVD 120
Query: 168 ---VQEYDRGLSVFDD-----------------------------RFDSDSVSSSLRYNC 195
V+ Y L DD +F + ++ Y
Sbjct: 121 QEAVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEP 180
Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEE 226
+ ++ Q++YD +N+RV+ M+E+G+ EE
Sbjct: 181 LIIGLNDDRQVIYDRINQRVNRMIENGLLEE 211
>sp|P65356|MIAA_STAAW tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain MW2)
GN=miaA PE=3 SV=1
Length = 311
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
+VVI+G T +GK+ LSI+LA R EII+ D MQVYK ++I T K+ + +PHHL+
Sbjct: 8 IVVIVGPTASGKTELSIELAKRI-NGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLI 66
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL-------------- 166
PDD F+ +F+ A++ I+DI +R K P++ GG+ +I SL
Sbjct: 67 DILNPDDT-FSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPA 125
Query: 167 ---LVQEYDRGLSVFDD--------RFDSDSVSS-----------SLRY----------- 193
+V++ L D+ +FD+ S + ++ Y
Sbjct: 126 QLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKKLLSNR 185
Query: 194 ----------NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ L ++ S + LY +NKRVD ML+ G+F E+ + +
Sbjct: 186 KKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVE 234
>sp|A8Z1X3|MIAA_STAAT tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=miaA PE=3 SV=1
Length = 311
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
+VVI+G T +GK+ LSI+LA R EII+ D MQVYK ++I T K+ + +PHHL+
Sbjct: 8 IVVIVGPTASGKTELSIELAKRI-NGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLI 66
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL-------------- 166
PDD F+ +F+ A++ I+DI +R K P++ GG+ +I SL
Sbjct: 67 DILNPDDT-FSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPA 125
Query: 167 ---LVQEYDRGLSVFDD--------RFDSDSVSS-----------SLRY----------- 193
+V++ L D+ +FD+ S + ++ Y
Sbjct: 126 QLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKKLLSNR 185
Query: 194 ----------NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ L ++ S + LY +NKRVD ML+ G+F E+ + +
Sbjct: 186 KKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVE 234
>sp|P65355|MIAA_STAAN tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
N315) GN=miaA PE=3 SV=1
Length = 311
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 59/229 (25%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
+VVI+G T +GK+ LSI+LA R EII+ D MQVYK ++I T K+ + +PHHL+
Sbjct: 8 IVVIVGPTASGKTELSIELAKRI-NGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLI 66
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL-------------- 166
PDD F+ +F+ A++ I+DI +R K P++ GG+ +I SL
Sbjct: 67 DILNPDDT-FSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPA 125
Query: 167 ---LVQEYDRGLSVFDD--------RFDSDSVSS-----------SLRY----------- 193
+V++ L D+ +FD+ S + ++ Y
Sbjct: 126 QLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKKLLSNR 185
Query: 194 ----------NCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
+ L ++ S + LY +NKRVD ML+ G+F E+ + +
Sbjct: 186 KKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVE 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,888,707
Number of Sequences: 539616
Number of extensions: 5615512
Number of successful extensions: 19571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 17437
Number of HSP's gapped (non-prelim): 1165
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)