Query 019312
Match_columns 343
No_of_seqs 322 out of 2940
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02748 tRNA dimethylallyltra 100.0 5.7E-64 1.2E-68 504.1 24.8 270 57-343 20-397 (468)
2 PLN02165 adenylate isopentenyl 100.0 1.5E-62 3.2E-67 474.3 26.6 278 57-343 41-333 (334)
3 PRK14729 miaA tRNA delta(2)-is 100.0 2.4E-58 5.3E-63 441.2 19.4 231 59-309 4-289 (300)
4 KOG1384 tRNA delta(2)-isopente 100.0 6.7E-58 1.5E-62 434.4 21.8 275 58-342 6-294 (348)
5 COG0324 MiaA tRNA delta(2)-iso 100.0 8.1E-57 1.8E-61 429.8 21.3 232 59-310 3-292 (308)
6 TIGR00174 miaA tRNA isopenteny 100.0 2.9E-55 6.4E-60 417.9 19.5 229 61-309 1-286 (287)
7 PRK00091 miaA tRNA delta(2)-is 100.0 6.8E-53 1.5E-57 405.8 22.1 229 58-306 3-287 (307)
8 PLN02840 tRNA dimethylallyltra 100.0 9.7E-53 2.1E-57 416.9 22.6 239 57-309 19-346 (421)
9 PF01715 IPPT: IPP transferase 100.0 5.2E-47 1.1E-51 356.3 15.8 195 94-307 1-252 (253)
10 PF01745 IPT: Isopentenyl tran 99.9 1E-24 2.2E-29 198.1 15.9 178 60-265 2-186 (233)
11 PRK00300 gmk guanylate kinase; 99.3 7.1E-12 1.5E-16 113.1 6.4 126 57-215 3-138 (205)
12 PRK14737 gmk guanylate kinase; 99.2 1.3E-11 2.8E-16 111.3 6.7 89 58-157 3-101 (186)
13 TIGR03263 guanyl_kin guanylate 99.2 1.2E-11 2.5E-16 109.4 5.6 124 59-215 1-134 (180)
14 COG0194 Gmk Guanylate kinase [ 99.2 1.7E-11 3.7E-16 109.8 5.7 124 58-215 3-136 (191)
15 COG3839 MalK ABC-type sugar tr 99.1 9.3E-10 2E-14 107.5 10.8 91 20-127 2-94 (338)
16 cd00071 GMPK Guanosine monopho 99.0 2.1E-10 4.6E-15 98.3 5.1 96 61-167 1-106 (137)
17 COG1120 FepC ABC-type cobalami 99.0 2.4E-10 5.3E-15 107.8 5.2 70 21-107 2-71 (258)
18 PF00625 Guanylate_kin: Guanyl 99.0 7.9E-10 1.7E-14 98.6 7.5 125 58-215 1-136 (183)
19 COG0396 sufC Cysteine desulfur 99.0 4.3E-10 9.3E-15 103.9 5.8 93 36-144 17-110 (251)
20 PRK14738 gmk guanylate kinase; 99.0 1.6E-09 3.5E-14 98.9 8.5 126 57-216 11-147 (206)
21 smart00072 GuKc Guanylate kina 99.0 2.3E-09 5.1E-14 95.8 8.9 124 59-215 2-136 (184)
22 PRK10078 ribose 1,5-bisphospho 99.0 4.4E-09 9.5E-14 94.2 10.4 120 59-214 2-131 (186)
23 KOG0058 Peptide exporter, ABC 99.0 1.1E-09 2.5E-14 114.4 7.6 72 17-103 461-533 (716)
24 PRK04220 2-phosphoglycerate ki 98.9 3.5E-09 7.6E-14 102.0 8.8 130 57-218 90-239 (301)
25 COG2884 FtsE Predicted ATPase 98.9 2.9E-09 6.3E-14 96.0 7.6 90 22-127 2-98 (223)
26 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 2.4E-09 5.3E-14 100.7 7.3 98 20-138 3-100 (254)
27 KOG0056 Heavy metal exporter H 98.9 2E-09 4.4E-14 108.4 6.8 79 8-103 525-603 (790)
28 COG2274 SunT ABC-type bacterio 98.9 1.6E-09 3.6E-14 115.3 5.8 76 15-105 465-540 (709)
29 COG1122 CbiO ABC-type cobalt t 98.9 2.5E-09 5.4E-14 100.0 5.6 99 22-136 4-109 (235)
30 COG4987 CydC ABC-type transpor 98.9 4.3E-09 9.3E-14 107.0 7.3 72 21-107 336-407 (573)
31 PRK05057 aroK shikimate kinase 98.9 1.2E-08 2.6E-13 90.6 9.1 112 59-212 4-115 (172)
32 TIGR02868 CydC thiol reductant 98.8 5E-09 1.1E-13 107.9 6.8 71 18-104 331-401 (529)
33 COG0703 AroK Shikimate kinase 98.8 6.8E-09 1.5E-13 92.4 5.8 132 60-233 3-136 (172)
34 PLN02772 guanylate kinase 98.8 6.8E-09 1.5E-13 103.2 6.4 125 58-214 134-268 (398)
35 TIGR02322 phosphon_PhnN phosph 98.8 2.5E-08 5.4E-13 88.2 9.3 122 59-214 1-131 (179)
36 COG3842 PotA ABC-type spermidi 98.8 7.4E-09 1.6E-13 101.8 5.9 97 20-133 4-103 (352)
37 PRK00131 aroK shikimate kinase 98.8 1.4E-08 3.1E-13 88.3 6.5 117 57-215 2-118 (175)
38 TIGR00960 3a0501s02 Type II (G 98.8 8.9E-09 1.9E-13 93.8 5.3 67 22-103 2-68 (216)
39 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 1.2E-08 2.6E-13 108.4 7.1 72 19-105 449-520 (686)
40 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 1E-08 2.2E-13 109.3 6.4 71 19-104 475-545 (710)
41 PRK13946 shikimate kinase; Pro 98.7 1.5E-08 3.2E-13 90.7 6.3 131 59-231 10-142 (184)
42 PTZ00243 ABC transporter; Prov 98.7 1.2E-08 2.6E-13 117.2 7.0 74 17-105 1304-1377(1560)
43 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 1.1E-08 2.4E-13 93.3 5.4 67 23-104 2-70 (218)
44 cd03263 ABC_subfamily_A The AB 98.7 1.3E-08 2.8E-13 92.9 5.7 67 22-103 1-67 (220)
45 PRK13631 cbiO cobalt transport 98.7 2E-08 4.3E-13 97.9 7.0 70 20-104 20-92 (320)
46 PRK11176 lipid transporter ATP 98.7 1.8E-08 3.9E-13 104.9 7.2 71 19-104 339-409 (582)
47 PRK13948 shikimate kinase; Pro 98.7 2.2E-08 4.8E-13 90.1 6.7 135 57-233 8-143 (182)
48 COG1132 MdlB ABC-type multidru 98.7 1.5E-08 3.2E-13 105.5 6.3 73 17-105 324-396 (567)
49 TIGR02857 CydD thiol reductant 98.7 1.9E-08 4.2E-13 103.6 7.1 70 20-104 319-388 (529)
50 cd03292 ABC_FtsE_transporter F 98.7 1.4E-08 3E-13 92.3 5.4 66 23-104 2-67 (214)
51 PRK11160 cysteine/glutathione 98.7 1.9E-08 4.1E-13 105.0 7.1 72 18-104 335-406 (574)
52 PRK13635 cbiO cobalt transport 98.7 1.6E-08 3.4E-13 96.4 5.9 69 22-105 6-74 (279)
53 TIGR02211 LolD_lipo_ex lipopro 98.7 1.7E-08 3.6E-13 92.2 5.9 69 22-105 2-72 (221)
54 cd03247 ABCC_cytochrome_bd The 98.7 1.8E-08 3.8E-13 89.5 5.5 67 22-103 1-67 (178)
55 TIGR00958 3a01208 Conjugate Tr 98.7 2.2E-08 4.8E-13 107.1 7.3 72 18-104 475-547 (711)
56 KOG0057 Mitochondrial Fe/S clu 98.7 1.5E-08 3.2E-13 103.3 5.5 72 18-106 348-419 (591)
57 PRK15056 manganese/iron transp 98.7 1.6E-08 3.4E-13 95.9 5.3 70 18-103 3-72 (272)
58 PRK11629 lolD lipoprotein tran 98.7 1.9E-08 4E-13 93.0 5.7 68 22-104 6-75 (233)
59 cd03257 ABC_NikE_OppD_transpor 98.7 2.2E-08 4.7E-13 91.7 6.0 68 22-104 2-71 (228)
60 COG1124 DppF ABC-type dipeptid 98.7 4.2E-08 9.1E-13 91.4 7.9 72 22-108 4-77 (252)
61 cd03244 ABCC_MRP_domain2 Domai 98.7 2.2E-08 4.8E-13 91.4 6.0 68 21-103 2-69 (221)
62 cd03369 ABCC_NFT1 Domain 2 of 98.7 2.5E-08 5.4E-13 90.4 6.2 72 17-103 2-73 (207)
63 COG3638 ABC-type phosphate/pho 98.7 2.5E-08 5.5E-13 92.6 6.3 71 20-106 2-72 (258)
64 cd03233 ABC_PDR_domain1 The pl 98.7 1.9E-08 4.2E-13 91.2 5.5 71 22-104 4-76 (202)
65 COG0410 LivF ABC-type branched 98.7 1.6E-08 3.6E-13 93.5 5.0 76 23-115 5-80 (237)
66 cd03259 ABC_Carb_Solutes_like 98.7 2.1E-08 4.6E-13 91.1 5.8 65 23-104 2-66 (213)
67 cd03296 ABC_CysA_sulfate_impor 98.7 2E-08 4.4E-13 93.1 5.7 66 22-104 3-68 (239)
68 TIGR03375 type_I_sec_LssB type 98.7 1.9E-08 4.2E-13 107.0 6.3 71 19-104 461-531 (694)
69 cd03252 ABCC_Hemolysin The ABC 98.7 2.3E-08 4.9E-13 92.4 5.7 67 22-103 1-67 (237)
70 PLN03130 ABC transporter C fam 98.7 2.5E-08 5.4E-13 115.0 7.2 74 17-105 1233-1306(1622)
71 COG1116 TauB ABC-type nitrate/ 98.7 3E-08 6.4E-13 92.8 6.4 64 22-102 4-67 (248)
72 cd03266 ABC_NatA_sodium_export 98.7 2.8E-08 6E-13 90.6 5.9 67 22-103 2-70 (218)
73 cd03289 ABCC_CFTR2 The CFTR su 98.7 2.4E-08 5.2E-13 95.3 5.7 68 21-104 2-69 (275)
74 PLN03232 ABC transporter C fam 98.7 2.5E-08 5.5E-13 114.4 6.9 74 17-105 1230-1303(1495)
75 TIGR02315 ABC_phnC phosphonate 98.7 2.8E-08 6.1E-13 92.1 5.9 67 22-104 2-68 (243)
76 cd03258 ABC_MetN_methionine_tr 98.7 3.2E-08 6.9E-13 91.2 6.3 68 22-104 2-71 (233)
77 cd03246 ABCC_Protease_Secretio 98.7 3.1E-08 6.7E-13 87.6 6.0 67 23-104 2-68 (173)
78 cd03234 ABCG_White The White s 98.7 2.6E-08 5.7E-13 91.5 5.6 68 21-103 3-75 (226)
79 TIGR01193 bacteriocin_ABC ABC- 98.7 2.8E-08 6.1E-13 106.0 6.5 70 19-104 471-540 (708)
80 cd03262 ABC_HisP_GlnQ_permease 98.7 3.5E-08 7.5E-13 89.5 6.2 64 23-103 2-65 (213)
81 COG1125 OpuBA ABC-type proline 98.7 3.2E-08 6.8E-13 93.0 5.9 68 22-106 2-69 (309)
82 PRK13643 cbiO cobalt transport 98.7 2.7E-08 5.9E-13 95.2 5.7 67 22-103 2-71 (288)
83 PRK13646 cbiO cobalt transport 98.7 2.8E-08 6E-13 95.0 5.7 68 22-104 3-73 (286)
84 cd03219 ABC_Mj1267_LivG_branch 98.7 2.4E-08 5.2E-13 92.1 5.1 65 23-104 2-66 (236)
85 COG1127 Ttg2A ABC-type transpo 98.7 4.7E-08 1E-12 91.1 6.9 110 19-147 6-125 (263)
86 TIGR00957 MRP_assoc_pro multi 98.7 2.5E-08 5.5E-13 114.5 6.3 74 17-105 1280-1353(1522)
87 cd03261 ABC_Org_Solvent_Resist 98.7 2.6E-08 5.6E-13 92.1 5.2 65 23-104 2-66 (235)
88 cd03256 ABC_PhnC_transporter A 98.7 3E-08 6.6E-13 91.6 5.6 66 23-104 2-67 (241)
89 PRK09825 idnK D-gluconate kina 98.7 1.9E-07 4.2E-12 83.4 10.5 36 58-94 2-37 (176)
90 COG1136 SalX ABC-type antimicr 98.7 5.2E-08 1.1E-12 90.4 7.1 55 36-105 18-72 (226)
91 PRK10584 putative ABC transpor 98.7 4.1E-08 8.8E-13 90.2 6.4 69 21-104 6-76 (228)
92 cd03301 ABC_MalK_N The N-termi 98.7 3.3E-08 7.2E-13 89.8 5.7 64 23-103 2-65 (213)
93 cd03295 ABC_OpuCA_Osmoprotecti 98.7 3.4E-08 7.5E-13 91.7 5.9 66 23-104 2-67 (242)
94 cd03224 ABC_TM1139_LivF_branch 98.7 3.2E-08 7E-13 90.3 5.6 66 22-104 1-66 (222)
95 TIGR02673 FtsE cell division A 98.6 3.5E-08 7.6E-13 89.7 5.7 67 22-104 2-68 (214)
96 cd03225 ABC_cobalt_CbiO_domain 98.6 3.1E-08 6.7E-13 89.8 5.3 65 24-103 2-66 (211)
97 cd03216 ABC_Carb_Monos_I This 98.6 3.4E-08 7.4E-13 86.7 5.3 66 22-104 1-66 (163)
98 cd03228 ABCC_MRP_Like The MRP 98.6 4.1E-08 9E-13 86.6 5.8 66 23-103 2-67 (171)
99 PRK13632 cbiO cobalt transport 98.6 4E-08 8.7E-13 93.1 6.1 69 21-104 7-75 (271)
100 COG4619 ABC-type uncharacteriz 98.6 3.7E-08 8E-13 87.6 5.4 64 30-108 10-73 (223)
101 PRK14236 phosphate transporter 98.6 4.7E-08 1E-12 92.6 6.5 87 4-103 7-95 (272)
102 PRK10522 multidrug transporter 98.6 4.2E-08 9.2E-13 101.7 6.7 69 20-104 321-389 (547)
103 cd03226 ABC_cobalt_CbiO_domain 98.6 3.1E-08 6.8E-13 89.6 4.9 64 24-103 2-65 (205)
104 cd03293 ABC_NrtD_SsuB_transpor 98.6 3.4E-08 7.5E-13 90.3 5.2 66 23-103 2-69 (220)
105 PRK10908 cell division protein 98.6 3.7E-08 8.1E-13 90.2 5.4 66 22-103 2-67 (222)
106 PRK13644 cbiO cobalt transport 98.6 3.4E-08 7.4E-13 93.8 5.3 67 22-104 2-68 (274)
107 TIGR01842 type_I_sec_PrtD type 98.6 5.2E-08 1.1E-12 100.9 7.1 71 19-104 314-384 (544)
108 cd03245 ABCC_bacteriocin_expor 98.6 4.8E-08 1E-12 89.1 6.1 68 21-103 2-69 (220)
109 PRK10790 putative multidrug tr 98.6 4.7E-08 1E-12 102.1 6.8 70 19-104 338-407 (592)
110 PRK13650 cbiO cobalt transport 98.6 4.4E-08 9.5E-13 93.3 6.0 69 21-104 4-73 (279)
111 PRK13637 cbiO cobalt transport 98.6 4.4E-08 9.6E-13 93.7 6.0 68 22-104 3-73 (287)
112 PRK13647 cbiO cobalt transport 98.6 4E-08 8.8E-13 93.3 5.6 67 21-103 4-70 (274)
113 cd03260 ABC_PstB_phosphate_tra 98.6 4.2E-08 9.1E-13 90.1 5.5 64 23-103 2-70 (227)
114 PRK11153 metN DL-methionine tr 98.6 4.1E-08 9E-13 96.4 5.8 69 22-105 2-72 (343)
115 PRK13648 cbiO cobalt transport 98.6 4.4E-08 9.5E-13 92.6 5.7 68 21-103 7-74 (269)
116 TIGR01313 therm_gnt_kin carboh 98.6 2.5E-07 5.4E-12 80.5 10.1 116 62-216 1-116 (163)
117 cd03254 ABCC_Glucan_exporter_l 98.6 5E-08 1.1E-12 89.6 5.9 67 21-103 2-68 (229)
118 cd03218 ABC_YhbG The ABC trans 98.6 4.2E-08 9.1E-13 90.3 5.4 65 23-104 2-66 (232)
119 cd03269 ABC_putative_ATPase Th 98.6 3.8E-08 8.2E-13 89.3 5.0 64 23-103 2-65 (210)
120 TIGR03410 urea_trans_UrtE urea 98.6 4.6E-08 1E-12 90.0 5.5 65 23-104 2-66 (230)
121 cd03235 ABC_Metallic_Cations A 98.6 3.9E-08 8.4E-13 89.5 4.9 62 24-102 2-63 (213)
122 PRK13640 cbiO cobalt transport 98.6 6.1E-08 1.3E-12 92.5 6.4 73 20-104 4-76 (282)
123 TIGR02204 MsbA_rel ABC transpo 98.6 6.6E-08 1.4E-12 100.5 7.2 70 19-103 335-405 (576)
124 PRK13649 cbiO cobalt transport 98.6 4.7E-08 1E-12 92.9 5.6 68 22-104 3-73 (280)
125 TIGR02203 MsbA_lipidA lipid A 98.6 7E-08 1.5E-12 100.1 7.3 70 19-103 328-397 (571)
126 cd03213 ABCG_EPDR ABCG transpo 98.6 4.6E-08 1E-12 88.2 5.2 68 21-103 3-76 (194)
127 PRK14250 phosphate ABC transpo 98.6 5E-08 1.1E-12 90.7 5.6 65 22-103 4-68 (241)
128 TIGR03864 PQQ_ABC_ATP ABC tran 98.6 4.9E-08 1.1E-12 90.3 5.4 66 22-104 2-67 (236)
129 PRK13543 cytochrome c biogenes 98.6 7.3E-08 1.6E-12 88.1 6.5 66 21-103 11-76 (214)
130 PRK11022 dppD dipeptide transp 98.6 5.7E-08 1.2E-12 94.8 6.1 73 22-105 4-78 (326)
131 COG1126 GlnQ ABC-type polar am 98.6 6E-08 1.3E-12 89.2 5.8 67 22-105 3-69 (240)
132 cd03229 ABC_Class3 This class 98.6 5E-08 1.1E-12 86.6 5.2 65 23-104 2-66 (178)
133 cd03214 ABC_Iron-Siderophores_ 98.6 4.7E-08 1E-12 86.9 5.1 64 24-104 2-65 (180)
134 TIGR03411 urea_trans_UrtD urea 98.6 5E-08 1.1E-12 90.4 5.4 66 22-104 3-68 (242)
135 PRK11248 tauB taurine transpor 98.6 5.1E-08 1.1E-12 91.7 5.5 65 22-103 2-66 (255)
136 PRK10575 iron-hydroxamate tran 98.6 5.5E-08 1.2E-12 91.8 5.8 69 19-104 9-77 (265)
137 PRK10895 lipopolysaccharide AB 98.6 5.8E-08 1.3E-12 90.0 5.8 67 21-104 3-69 (241)
138 PRK13537 nodulation ABC transp 98.6 5.7E-08 1.2E-12 94.0 5.9 69 19-104 5-73 (306)
139 PRK06217 hypothetical protein; 98.6 4.4E-07 9.5E-12 81.0 11.2 34 60-94 2-35 (183)
140 PRK13652 cbiO cobalt transport 98.6 5.8E-08 1.3E-12 92.4 5.8 67 22-104 4-70 (277)
141 cd03265 ABC_DrrA DrrA is the A 98.6 5E-08 1.1E-12 89.2 5.2 64 23-103 2-65 (220)
142 cd03288 ABCC_SUR2 The SUR doma 98.6 6.3E-08 1.4E-12 91.0 6.0 71 19-104 17-87 (257)
143 PRK13636 cbiO cobalt transport 98.6 5.6E-08 1.2E-12 92.8 5.7 67 21-103 5-71 (283)
144 PRK13645 cbiO cobalt transport 98.6 6E-08 1.3E-12 92.7 5.9 69 20-103 5-76 (289)
145 TIGR01846 type_I_sec_HlyB type 98.6 7E-08 1.5E-12 102.9 7.0 71 19-104 453-523 (694)
146 PRK11124 artP arginine transpo 98.6 5.3E-08 1.1E-12 90.3 5.3 64 22-102 3-66 (242)
147 PRK13634 cbiO cobalt transport 98.6 5.5E-08 1.2E-12 93.2 5.6 68 22-104 3-73 (290)
148 PRK13633 cobalt transporter AT 98.6 5.5E-08 1.2E-12 92.6 5.5 68 22-104 5-76 (280)
149 PRK13651 cobalt transporter AT 98.6 5.6E-08 1.2E-12 94.0 5.6 66 22-102 3-71 (305)
150 PRK13639 cbiO cobalt transport 98.6 5.8E-08 1.2E-12 92.3 5.5 66 22-103 2-67 (275)
151 PRK10789 putative multidrug tr 98.6 8.2E-08 1.8E-12 100.1 7.1 71 19-104 311-381 (569)
152 TIGR02769 nickel_nikE nickel i 98.6 6.2E-08 1.3E-12 91.4 5.7 68 22-104 3-77 (265)
153 cd03251 ABCC_MsbA MsbA is an e 98.6 6.3E-08 1.4E-12 89.2 5.5 66 23-103 2-67 (234)
154 PRK10247 putative ABC transpor 98.6 8.4E-08 1.8E-12 88.3 6.2 67 21-104 7-73 (225)
155 cd03248 ABCC_TAP TAP, the Tran 98.6 7.6E-08 1.6E-12 88.3 5.8 69 20-103 10-79 (226)
156 PRK11174 cysteine/glutathione 98.6 6.7E-08 1.4E-12 100.9 6.1 69 19-104 347-415 (588)
157 PF13671 AAA_33: AAA domain; P 98.6 4.6E-08 1E-12 82.7 4.0 120 61-217 1-121 (143)
158 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.6 7.1E-08 1.5E-12 89.2 5.6 66 23-103 2-68 (238)
159 COG3840 ThiQ ABC-type thiamine 98.6 8.3E-08 1.8E-12 86.3 5.8 87 22-127 2-90 (231)
160 PRK11614 livF leucine/isoleuci 98.6 7.2E-08 1.6E-12 89.2 5.6 67 21-104 5-71 (237)
161 cd03230 ABC_DR_subfamily_A Thi 98.6 6.6E-08 1.4E-12 85.5 5.2 64 23-103 2-65 (173)
162 KOG0055 Multidrug/pheromone ex 98.6 7.2E-08 1.6E-12 106.2 6.5 74 18-106 347-421 (1228)
163 PRK13538 cytochrome c biogenes 98.6 7.3E-08 1.6E-12 87.3 5.5 66 22-104 2-67 (204)
164 PRK09493 glnQ glutamine ABC tr 98.6 6.5E-08 1.4E-12 89.6 5.3 65 22-103 2-66 (240)
165 cd03253 ABCC_ATM1_transporter 98.6 7.3E-08 1.6E-12 88.9 5.6 65 23-103 2-66 (236)
166 PRK13949 shikimate kinase; Pro 98.6 1.4E-07 3.1E-12 83.6 7.2 112 60-213 2-113 (169)
167 PRK13638 cbiO cobalt transport 98.6 7E-08 1.5E-12 91.4 5.5 65 22-103 2-66 (271)
168 PRK11264 putative amino-acid A 98.6 7E-08 1.5E-12 89.9 5.4 65 22-103 4-68 (250)
169 TIGR02314 ABC_MetN D-methionin 98.6 7.1E-08 1.5E-12 94.9 5.7 70 22-106 2-73 (343)
170 PRK00625 shikimate kinase; Pro 98.6 1.2E-07 2.5E-12 84.8 6.5 115 61-214 2-116 (173)
171 cd03215 ABC_Carb_Monos_II This 98.6 7.1E-08 1.5E-12 85.9 5.2 63 22-105 5-67 (182)
172 cd03268 ABC_BcrA_bacitracin_re 98.6 6.7E-08 1.5E-12 87.5 5.1 64 23-103 2-65 (208)
173 TIGR03005 ectoine_ehuA ectoine 98.6 6.7E-08 1.4E-12 90.3 5.1 65 22-103 1-65 (252)
174 COG4559 ABC-type hemin transpo 98.6 5.9E-08 1.3E-12 89.1 4.6 71 22-109 2-72 (259)
175 cd00464 SK Shikimate kinase (S 98.6 1.1E-07 2.5E-12 81.3 6.1 111 62-214 2-112 (154)
176 PRK14254 phosphate ABC transpo 98.6 1.1E-07 2.4E-12 91.0 6.5 82 9-103 27-109 (285)
177 PRK13540 cytochrome c biogenes 98.6 8.6E-08 1.9E-12 86.6 5.5 65 22-103 2-66 (200)
178 cd03264 ABC_drug_resistance_li 98.6 6.5E-08 1.4E-12 87.8 4.7 63 23-103 2-64 (211)
179 PRK11831 putative ABC transpor 98.6 8.4E-08 1.8E-12 90.8 5.6 67 21-104 7-73 (269)
180 cd03250 ABCC_MRP_domain1 Domai 98.6 9.3E-08 2E-12 86.5 5.7 63 22-99 1-66 (204)
181 PRK13539 cytochrome c biogenes 98.6 8.5E-08 1.8E-12 87.2 5.5 64 22-102 3-66 (207)
182 PRK13641 cbiO cobalt transport 98.6 8.8E-08 1.9E-12 91.6 5.8 69 21-104 2-73 (287)
183 PRK13642 cbiO cobalt transport 98.6 1.1E-07 2.3E-12 90.5 6.3 69 21-104 4-73 (277)
184 cd03223 ABCD_peroxisomal_ALDP 98.5 9.9E-08 2.2E-12 84.0 5.5 59 22-95 1-59 (166)
185 PRK13657 cyclic beta-1,2-gluca 98.5 1.1E-07 2.4E-12 99.3 6.8 69 20-104 333-401 (588)
186 TIGR01194 cyc_pep_trnsptr cycl 98.5 1.1E-07 2.4E-12 98.9 6.7 70 19-103 335-407 (555)
187 PRK14259 phosphate ABC transpo 98.5 1E-07 2.2E-12 90.3 5.8 76 15-103 7-83 (269)
188 PRK14252 phosphate ABC transpo 98.5 1.3E-07 2.7E-12 89.3 6.4 79 11-102 6-85 (265)
189 PRK13947 shikimate kinase; Pro 98.5 1.5E-07 3.3E-12 82.3 6.5 129 61-232 3-134 (171)
190 PRK14257 phosphate ABC transpo 98.5 1E-07 2.2E-12 93.2 5.9 77 17-104 76-153 (329)
191 PRK11701 phnK phosphonate C-P 98.5 1.1E-07 2.3E-12 89.3 5.8 64 21-101 6-69 (258)
192 PRK11247 ssuB aliphatic sulfon 98.5 9.9E-08 2.2E-12 90.1 5.6 67 19-102 10-76 (257)
193 PRK10419 nikE nickel transport 98.5 1.1E-07 2.3E-12 90.1 5.8 69 22-105 4-79 (268)
194 PRK13536 nodulation factor exp 98.5 1.1E-07 2.3E-12 93.5 5.9 68 20-104 40-107 (340)
195 PRK13548 hmuV hemin importer A 98.5 1E-07 2.2E-12 89.7 5.6 65 22-103 3-67 (258)
196 PRK11545 gntK gluconate kinase 98.5 2.6E-07 5.6E-12 81.4 7.8 113 65-216 1-113 (163)
197 PRK15093 antimicrobial peptide 98.5 1E-07 2.2E-12 93.1 5.8 73 22-105 4-78 (330)
198 TIGR03608 L_ocin_972_ABC putat 98.5 8.3E-08 1.8E-12 86.6 4.8 62 25-103 2-63 (206)
199 TIGR01271 CFTR_protein cystic 98.5 1.2E-07 2.6E-12 108.9 7.1 73 17-105 1213-1285(1490)
200 PRK11300 livG leucine/isoleuci 98.5 9.6E-08 2.1E-12 89.2 5.3 67 21-104 5-71 (255)
201 PRK13541 cytochrome c biogenes 98.5 1.1E-07 2.5E-12 85.5 5.6 64 22-103 2-65 (195)
202 COG4525 TauB ABC-type taurine 98.5 1E-07 2.2E-12 86.6 5.1 67 22-103 4-70 (259)
203 PRK14235 phosphate transporter 98.5 1.1E-07 2.4E-12 89.9 5.7 73 18-103 16-89 (267)
204 TIGR01189 ccmA heme ABC export 98.5 1E-07 2.2E-12 85.9 5.1 65 23-104 2-66 (198)
205 PRK10418 nikD nickel transport 98.5 1.1E-07 2.4E-12 89.0 5.7 69 21-103 4-72 (254)
206 PRK10744 pstB phosphate transp 98.5 1.2E-07 2.6E-12 89.2 5.8 73 18-103 10-83 (260)
207 COG1131 CcmA ABC-type multidru 98.5 1.3E-07 2.9E-12 91.0 6.2 68 22-105 5-72 (293)
208 TIGR01978 sufC FeS assembly AT 98.5 9.7E-08 2.1E-12 88.3 5.1 65 23-104 2-68 (243)
209 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 1.2E-07 2.6E-12 87.4 5.5 64 22-102 23-86 (224)
210 PRK14256 phosphate ABC transpo 98.5 1.8E-07 3.8E-12 87.5 6.7 72 20-104 3-75 (252)
211 PRK11650 ugpC glycerol-3-phosp 98.5 1.1E-07 2.4E-12 93.9 5.6 69 21-105 3-71 (356)
212 TIGR02323 CP_lyasePhnK phospho 98.5 1.2E-07 2.6E-12 88.5 5.5 64 21-101 3-66 (253)
213 PRK14237 phosphate transporter 98.5 1.4E-07 3E-12 89.3 5.9 71 20-103 19-90 (267)
214 PRK11432 fbpC ferric transport 98.5 7.7E-08 1.7E-12 94.9 4.3 67 21-104 6-72 (351)
215 PRK07261 topology modulation p 98.5 9.2E-07 2E-11 78.5 10.8 34 61-95 2-35 (171)
216 TIGR01288 nodI ATP-binding ABC 98.5 1.1E-07 2.5E-12 91.5 5.3 66 21-103 4-69 (303)
217 PRK10253 iron-enterobactin tra 98.5 1E-07 2.3E-12 89.9 4.9 68 20-104 6-73 (265)
218 PRK14275 phosphate ABC transpo 98.5 1.6E-07 3.5E-12 89.8 6.2 81 9-103 27-109 (286)
219 TIGR01166 cbiO cobalt transpor 98.5 1.5E-07 3.3E-12 84.1 5.7 52 37-103 6-57 (190)
220 PRK14248 phosphate ABC transpo 98.5 1.8E-07 3.8E-12 88.4 6.4 71 21-104 21-92 (268)
221 PRK14238 phosphate transporter 98.5 1.6E-07 3.4E-12 89.1 5.9 73 17-103 20-94 (271)
222 TIGR00968 3a0106s01 sulfate AB 98.5 1.4E-07 3.1E-12 87.5 5.5 65 23-104 2-66 (237)
223 TIGR03265 PhnT2 putative 2-ami 98.5 1.2E-07 2.6E-12 93.7 5.2 69 21-106 4-72 (353)
224 TIGR02982 heterocyst_DevA ABC 98.5 1.4E-07 3E-12 86.4 5.4 68 22-104 2-71 (220)
225 PRK15112 antimicrobial peptide 98.5 1.5E-07 3.3E-12 88.9 5.8 68 21-103 4-78 (267)
226 PRK11231 fecE iron-dicitrate t 98.5 1.3E-07 2.8E-12 88.6 5.2 65 22-103 3-67 (255)
227 KOG0054 Multidrug resistance-a 98.5 2E-07 4.3E-12 104.6 7.5 73 17-104 1134-1206(1381)
228 PRK09473 oppD oligopeptide tra 98.5 1.9E-07 4.1E-12 91.4 6.5 73 21-105 12-86 (330)
229 PRK10619 histidine/lysine/argi 98.5 1.4E-07 3E-12 88.5 5.3 67 20-103 4-70 (257)
230 TIGR03522 GldA_ABC_ATP gliding 98.5 1.9E-07 4.1E-12 90.0 6.4 66 22-104 3-68 (301)
231 PRK14242 phosphate transporter 98.5 1.4E-07 3.1E-12 88.0 5.4 70 21-103 6-76 (253)
232 COG1102 Cmk Cytidylate kinase 98.5 3.5E-07 7.5E-12 80.6 7.3 37 61-100 2-38 (179)
233 cd03294 ABC_Pro_Gly_Bertaine T 98.5 1.7E-07 3.7E-12 88.8 5.8 62 26-104 29-90 (269)
234 PRK14241 phosphate transporter 98.5 2.2E-07 4.9E-12 87.1 6.6 70 21-103 4-74 (258)
235 TIGR03873 F420-0_ABC_ATP propo 98.5 1.3E-07 2.9E-12 88.5 5.1 66 22-104 2-67 (256)
236 KOG0055 Multidrug/pheromone ex 98.5 1.8E-07 3.9E-12 103.2 6.7 74 17-105 983-1057(1228)
237 PTZ00265 multidrug resistance 98.5 1.7E-07 3.6E-12 107.4 6.7 57 19-85 1163-1220(1466)
238 cd03290 ABCC_SUR1_N The SUR do 98.5 1.9E-07 4.2E-12 85.2 6.0 65 24-104 3-67 (218)
239 PRK11607 potG putrescine trans 98.5 1.4E-07 3E-12 94.0 5.4 70 19-105 17-86 (377)
240 cd03232 ABC_PDR_domain2 The pl 98.5 1.5E-07 3.3E-12 84.6 5.2 70 21-103 3-74 (192)
241 TIGR01192 chvA glucan exporter 98.5 2.1E-07 4.6E-12 97.4 6.9 70 19-104 332-401 (585)
242 TIGR00972 3a0107s01c2 phosphat 98.5 1.6E-07 3.5E-12 87.5 5.2 70 22-104 2-72 (247)
243 PRK10851 sulfate/thiosulfate t 98.5 1.8E-07 4E-12 92.3 5.8 67 22-105 3-69 (353)
244 TIGR01277 thiQ thiamine ABC tr 98.5 2.1E-07 4.5E-12 84.8 5.7 63 23-104 2-64 (213)
245 PRK11000 maltose/maltodextrin 98.5 1.8E-07 3.8E-12 92.9 5.6 67 21-104 3-69 (369)
246 cd03300 ABC_PotA_N PotA is an 98.5 1.9E-07 4.1E-12 86.3 5.5 65 23-104 2-66 (232)
247 PRK14267 phosphate ABC transpo 98.5 1.8E-07 3.9E-12 87.4 5.4 70 21-103 4-74 (253)
248 TIGR03740 galliderm_ABC gallid 98.5 1.7E-07 3.7E-12 85.9 5.1 64 23-103 2-65 (223)
249 PRK14268 phosphate ABC transpo 98.5 2.1E-07 4.5E-12 87.5 5.7 74 17-103 8-82 (258)
250 COG1117 PstB ABC-type phosphat 98.5 1.7E-07 3.6E-12 86.2 4.9 77 20-109 6-83 (253)
251 PRK11308 dppF dipeptide transp 98.5 2.3E-07 4.9E-12 90.7 6.2 70 21-105 5-82 (327)
252 PRK14240 phosphate transporter 98.5 1.9E-07 4.1E-12 87.0 5.4 70 21-103 3-73 (250)
253 PRK14258 phosphate ABC transpo 98.5 2E-07 4.2E-12 87.8 5.5 70 21-103 7-77 (261)
254 PRK14262 phosphate ABC transpo 98.5 1.8E-07 3.9E-12 87.2 5.2 70 21-103 3-73 (250)
255 TIGR01360 aden_kin_iso1 adenyl 98.5 2.8E-07 6E-12 81.5 6.1 35 59-94 3-37 (188)
256 PRK14247 phosphate ABC transpo 98.5 1.9E-07 4.2E-12 87.0 5.4 69 22-103 4-73 (250)
257 PRK09536 btuD corrinoid ABC tr 98.5 1.8E-07 3.9E-12 94.0 5.5 67 21-104 3-69 (402)
258 PLN02199 shikimate kinase 98.5 2.7E-07 5.8E-12 88.8 6.4 114 58-213 101-214 (303)
259 PRK14274 phosphate ABC transpo 98.5 2.1E-07 4.5E-12 87.4 5.5 70 21-103 12-82 (259)
260 cd03299 ABC_ModC_like Archeal 98.5 2.2E-07 4.7E-12 86.1 5.4 64 23-104 2-65 (235)
261 PRK14269 phosphate ABC transpo 98.5 2.2E-07 4.8E-12 86.6 5.5 69 22-104 3-71 (246)
262 PRK14251 phosphate ABC transpo 98.4 2.2E-07 4.8E-12 86.7 5.5 70 21-103 4-74 (251)
263 PRK13477 bifunctional pantoate 98.4 1.6E-06 3.5E-11 89.4 12.2 49 38-100 274-322 (512)
264 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 2.1E-07 4.5E-12 80.2 4.9 60 23-99 2-61 (144)
265 PRK14270 phosphate ABC transpo 98.4 2.5E-07 5.4E-12 86.4 5.8 71 21-104 4-75 (251)
266 PRK15079 oligopeptide ABC tran 98.4 2.6E-07 5.5E-12 90.5 6.0 69 22-105 9-88 (331)
267 PRK14260 phosphate ABC transpo 98.4 2.3E-07 5E-12 87.2 5.5 70 21-103 7-77 (259)
268 PRK09580 sufC cysteine desulfu 98.4 1.9E-07 4.1E-12 86.8 4.8 66 22-104 2-69 (248)
269 CHL00131 ycf16 sulfate ABC tra 98.4 2.3E-07 5E-12 86.5 5.4 67 21-104 7-75 (252)
270 PRK09452 potA putrescine/sperm 98.4 2.1E-07 4.5E-12 92.7 5.4 68 21-105 14-81 (375)
271 cd03231 ABC_CcmA_heme_exporter 98.4 2.3E-07 5.1E-12 83.9 5.3 64 23-103 2-65 (201)
272 PRK05541 adenylylsulfate kinas 98.4 7.9E-07 1.7E-11 78.5 8.5 28 57-84 5-32 (176)
273 PRK14261 phosphate ABC transpo 98.4 2.5E-07 5.5E-12 86.4 5.5 71 21-104 6-77 (253)
274 cd00227 CPT Chloramphenicol (C 98.4 2.5E-06 5.4E-11 75.5 11.5 130 59-217 2-134 (175)
275 PRK09984 phosphonate/organopho 98.4 2.4E-07 5.3E-12 87.1 5.3 69 21-103 4-72 (262)
276 PRK14273 phosphate ABC transpo 98.4 2.5E-07 5.4E-12 86.5 5.4 70 21-103 7-77 (254)
277 cd03217 ABC_FeS_Assembly ABC-t 98.4 2.4E-07 5.3E-12 83.8 5.1 66 23-105 2-69 (200)
278 PRK14253 phosphate ABC transpo 98.4 2.6E-07 5.6E-12 86.1 5.4 70 21-103 3-73 (249)
279 COG4618 ArpD ABC-type protease 98.4 4.6E-07 1E-11 92.0 7.4 70 19-103 332-401 (580)
280 TIGR02324 CP_lyasePhnL phospho 98.4 2.9E-07 6.2E-12 84.3 5.5 60 22-95 2-66 (224)
281 cd03298 ABC_ThiQ_thiamine_tran 98.4 2.9E-07 6.4E-12 83.5 5.5 62 23-103 2-63 (211)
282 TIGR03258 PhnT 2-aminoethylpho 98.4 2.5E-07 5.4E-12 91.7 5.4 68 20-104 4-73 (362)
283 PRK09544 znuC high-affinity zi 98.4 2.6E-07 5.7E-12 86.8 5.1 59 21-95 4-62 (251)
284 PRK13547 hmuV hemin importer A 98.4 2.6E-07 5.7E-12 87.9 5.2 69 22-103 2-74 (272)
285 COG1135 AbcC ABC-type metal io 98.4 2.4E-07 5.2E-12 89.1 4.8 69 22-105 2-73 (339)
286 COG0444 DppD ABC-type dipeptid 98.4 4.2E-07 9.2E-12 87.8 6.5 71 25-106 7-78 (316)
287 PRK10771 thiQ thiamine transpo 98.4 3.5E-07 7.7E-12 84.4 5.8 63 22-103 2-64 (232)
288 COG0411 LivG ABC-type branched 98.4 9.5E-08 2.1E-12 89.1 1.9 83 37-136 18-100 (250)
289 PRK14249 phosphate ABC transpo 98.4 3.3E-07 7.2E-12 85.6 5.5 69 21-102 4-73 (251)
290 PRK14244 phosphate ABC transpo 98.4 3.1E-07 6.6E-12 85.8 5.2 70 21-103 5-75 (251)
291 PRK10938 putative molybdenum t 98.4 3.2E-07 7E-12 93.8 5.7 65 22-103 4-68 (490)
292 PRK14272 phosphate ABC transpo 98.4 5.6E-07 1.2E-11 83.9 6.8 69 22-103 5-74 (252)
293 PRK14265 phosphate ABC transpo 98.4 4.1E-07 8.8E-12 86.5 5.9 74 17-103 16-90 (274)
294 PRK14255 phosphate ABC transpo 98.4 3.8E-07 8.3E-12 85.1 5.4 69 22-103 6-75 (252)
295 PRK06762 hypothetical protein; 98.4 1E-06 2.2E-11 76.9 7.6 36 59-94 2-38 (166)
296 PRK09700 D-allose transporter 98.4 3.7E-07 8.1E-12 93.9 5.4 67 21-104 5-71 (510)
297 cd02021 GntK Gluconate kinase 98.4 3.5E-06 7.7E-11 72.2 10.6 33 61-94 1-33 (150)
298 COG4608 AppF ABC-type oligopep 98.4 4.5E-07 9.6E-12 85.9 5.4 55 37-106 27-81 (268)
299 COG4988 CydD ABC-type transpor 98.4 6.2E-07 1.3E-11 92.3 6.8 69 22-106 321-389 (559)
300 PRK06547 hypothetical protein; 98.4 7.7E-07 1.7E-11 79.3 6.5 40 57-99 13-52 (172)
301 TIGR00017 cmk cytidylate kinas 98.4 1.6E-06 3.4E-11 80.1 8.7 38 60-100 3-40 (217)
302 PRK14271 phosphate ABC transpo 98.4 4.9E-07 1.1E-11 86.1 5.4 71 21-104 21-92 (276)
303 PRK14245 phosphate ABC transpo 98.4 5E-07 1.1E-11 84.3 5.2 69 21-104 3-74 (250)
304 PRK08154 anaerobic benzoate ca 98.3 6.2E-07 1.3E-11 86.9 6.0 138 54-232 128-268 (309)
305 PRK03731 aroL shikimate kinase 98.3 7.9E-07 1.7E-11 78.0 6.1 110 60-214 3-114 (171)
306 PRK10762 D-ribose transporter 98.3 4.7E-07 1E-11 93.0 5.3 65 22-103 5-69 (501)
307 PRK14243 phosphate transporter 98.3 5.4E-07 1.2E-11 85.0 5.4 70 21-103 10-80 (264)
308 PRK13549 xylose transporter AT 98.3 8.6E-07 1.9E-11 91.2 7.2 69 20-103 258-328 (506)
309 PRK15439 autoinducer 2 ABC tra 98.3 4.9E-07 1.1E-11 93.2 5.4 67 21-104 11-77 (510)
310 PRK14239 phosphate transporter 98.3 5.5E-07 1.2E-11 83.9 5.3 69 21-103 5-75 (252)
311 PTZ00265 multidrug resistance 98.3 8E-07 1.7E-11 101.9 7.6 70 20-103 381-451 (1466)
312 PRK14264 phosphate ABC transpo 98.3 7.5E-07 1.6E-11 86.0 6.3 71 20-103 44-115 (305)
313 PF00005 ABC_tran: ABC transpo 98.3 2.8E-07 6E-12 77.5 2.7 51 39-104 1-51 (137)
314 PRK11288 araG L-arabinose tran 98.3 5.6E-07 1.2E-11 92.4 5.3 66 21-103 4-69 (501)
315 PRK14246 phosphate ABC transpo 98.3 7.7E-07 1.7E-11 83.8 5.8 72 18-102 7-80 (257)
316 KOG3354 Gluconate kinase [Carb 98.3 3.8E-06 8.2E-11 73.7 9.5 143 59-233 12-157 (191)
317 PRK15134 microcin C ABC transp 98.3 6E-07 1.3E-11 92.8 5.4 73 21-104 5-80 (529)
318 TIGR01184 ntrCD nitrate transp 98.3 8.1E-07 1.8E-11 82.1 5.8 51 39-104 1-51 (230)
319 PRK14021 bifunctional shikimat 98.3 8.9E-07 1.9E-11 92.2 6.6 138 58-233 5-143 (542)
320 PRK13549 xylose transporter AT 98.3 5.8E-07 1.3E-11 92.4 5.1 69 21-104 5-73 (506)
321 cd03267 ABC_NatA_like Similar 98.3 7.1E-07 1.5E-11 82.8 5.2 53 36-103 34-86 (236)
322 TIGR02633 xylG D-xylose ABC tr 98.3 9.5E-07 2.1E-11 90.6 6.5 69 20-103 256-326 (500)
323 PRK11819 putative ABC transpor 98.3 7.3E-07 1.6E-11 92.8 5.6 60 21-95 6-65 (556)
324 cd03291 ABCC_CFTR1 The CFTR su 98.3 1.1E-06 2.5E-11 84.1 6.4 64 14-95 32-95 (282)
325 cd00267 ABC_ATPase ABC (ATP-bi 98.3 8.2E-07 1.8E-11 77.0 4.9 63 24-103 2-64 (157)
326 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 1.1E-06 2.4E-11 77.7 5.8 33 61-94 1-33 (183)
327 PRK10636 putative ABC transpor 98.3 9.6E-07 2.1E-11 93.6 6.3 61 19-95 310-370 (638)
328 PRK14266 phosphate ABC transpo 98.3 9.7E-07 2.1E-11 82.3 5.6 69 22-103 4-73 (250)
329 TIGR01188 drrA daunorubicin re 98.3 8.6E-07 1.9E-11 85.4 5.3 53 37-104 7-59 (302)
330 COG3265 GntK Gluconate kinase 98.3 1.5E-06 3.3E-11 75.5 6.3 130 65-234 1-131 (161)
331 PRK09700 D-allose transporter 98.3 1.5E-06 3.3E-11 89.4 7.4 64 21-103 265-328 (510)
332 PRK10982 galactose/methyl gala 98.3 1.3E-06 2.7E-11 89.5 6.8 68 18-104 247-314 (491)
333 PRK08233 hypothetical protein; 98.3 6.7E-06 1.4E-10 72.2 10.5 36 59-94 3-38 (182)
334 PRK10261 glutathione transport 98.3 9E-07 1.9E-11 93.5 5.8 70 21-105 313-391 (623)
335 TIGR02633 xylG D-xylose ABC tr 98.3 8E-07 1.7E-11 91.2 5.2 68 22-104 2-69 (500)
336 COG0488 Uup ATPase components 98.3 1.5E-06 3.3E-11 90.0 7.2 73 16-103 316-388 (530)
337 cd03237 ABC_RNaseL_inhibitor_d 98.3 1.4E-06 2.9E-11 81.8 6.2 60 29-99 1-60 (246)
338 TIGR02770 nickel_nikD nickel i 98.3 1E-06 2.2E-11 81.3 5.2 54 39-103 2-55 (230)
339 COG4136 ABC-type uncharacteriz 98.3 1.8E-06 4E-11 75.7 6.4 79 22-115 3-81 (213)
340 TIGR01186 proV glycine betaine 98.3 1.1E-06 2.5E-11 87.1 5.7 54 37-105 7-60 (363)
341 PRK10261 glutathione transport 98.3 1.4E-06 3E-11 92.1 6.6 66 21-101 12-79 (623)
342 PRK15064 ABC transporter ATP-b 98.3 1E-06 2.3E-11 91.1 5.6 57 22-94 2-58 (530)
343 PRK08118 topology modulation p 98.3 9.2E-06 2E-10 71.9 10.8 34 60-94 2-35 (167)
344 PHA02530 pseT polynucleotide k 98.2 4.2E-06 9E-11 79.9 9.0 120 60-216 3-125 (300)
345 COG1118 CysA ABC-type sulfate/ 98.2 1.2E-06 2.6E-11 84.4 5.1 63 21-100 2-64 (345)
346 COG4604 CeuD ABC-type enteroch 98.2 1.7E-06 3.6E-11 78.9 5.8 67 22-105 2-68 (252)
347 PRK10982 galactose/methyl gala 98.2 7.9E-07 1.7E-11 91.1 4.2 63 25-104 2-64 (491)
348 PRK14530 adenylate kinase; Pro 98.2 2.9E-06 6.3E-11 77.6 7.4 35 59-94 3-37 (215)
349 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1.3E-06 2.8E-11 90.9 5.7 59 21-94 4-62 (552)
350 cd03297 ABC_ModC_molybdenum_tr 98.2 1.4E-06 3E-11 79.4 5.0 58 26-103 5-62 (214)
351 PRK03695 vitamin B12-transport 98.2 1.4E-06 3E-11 81.5 5.1 59 24-104 3-61 (248)
352 PLN03073 ABC transporter F fam 98.2 1.6E-06 3.4E-11 93.1 6.1 60 20-94 507-566 (718)
353 PRK10938 putative molybdenum t 98.2 1.4E-06 3E-11 89.2 5.4 68 20-103 259-326 (490)
354 PRK15134 microcin C ABC transp 98.2 1.6E-06 3.5E-11 89.6 6.0 68 21-104 275-351 (529)
355 PRK15177 Vi polysaccharide exp 98.2 1.7E-06 3.7E-11 79.2 5.5 43 38-94 2-44 (213)
356 PRK03839 putative kinase; Prov 98.2 5.7E-06 1.2E-10 73.3 8.6 33 61-94 2-34 (180)
357 PRK13951 bifunctional shikimat 98.2 1.4E-06 3E-11 89.6 5.3 128 61-232 2-129 (488)
358 PRK10636 putative ABC transpor 98.2 1.3E-06 2.8E-11 92.5 5.2 58 22-95 2-59 (638)
359 PF06414 Zeta_toxin: Zeta toxi 98.2 6.7E-06 1.5E-10 74.4 9.1 127 57-218 13-145 (199)
360 cd03236 ABC_RNaseL_inhibitor_d 98.2 1.5E-06 3.2E-11 82.1 4.6 53 26-94 5-57 (255)
361 PRK14527 adenylate kinase; Pro 98.2 2.8E-06 6.2E-11 76.2 6.2 37 57-94 4-40 (191)
362 TIGR03269 met_CoM_red_A2 methy 98.2 1.8E-06 4E-11 89.0 5.6 62 20-95 278-342 (520)
363 cd02024 NRK1 Nicotinamide ribo 98.2 6.1E-06 1.3E-10 74.7 8.3 34 61-94 1-34 (187)
364 TIGR00954 3a01203 Peroxysomal 98.2 1.8E-06 3.9E-11 91.8 5.6 55 20-85 450-504 (659)
365 cd03222 ABC_RNaseL_inhibitor T 98.2 1.7E-06 3.8E-11 77.4 4.6 41 57-102 23-63 (177)
366 COG1123 ATPase components of v 98.2 4.1E-06 8.8E-11 86.4 7.7 66 21-101 280-354 (539)
367 PRK13545 tagH teichoic acids e 98.2 2.5E-06 5.5E-11 88.1 6.1 72 14-100 14-86 (549)
368 KOG0066 eIF2-interacting prote 98.2 2.3E-06 4.9E-11 85.8 5.5 68 5-86 573-640 (807)
369 PRK15439 autoinducer 2 ABC tra 98.2 3.6E-06 7.9E-11 86.7 7.2 63 20-104 267-329 (510)
370 PF13207 AAA_17: AAA domain; P 98.2 9.9E-07 2.2E-11 72.6 2.5 33 61-94 1-33 (121)
371 PRK11288 araG L-arabinose tran 98.2 2.7E-06 5.9E-11 87.4 6.1 63 21-104 257-319 (501)
372 PRK13546 teichoic acids export 98.2 2.4E-06 5.3E-11 81.0 5.3 49 36-99 37-85 (264)
373 COG4615 PvdE ABC-type sideroph 98.2 4.3E-06 9.3E-11 83.0 7.1 69 19-103 320-388 (546)
374 PRK10070 glycine betaine trans 98.2 2.4E-06 5.3E-11 85.8 5.5 53 38-105 43-95 (400)
375 COG4555 NatA ABC-type Na+ tran 98.1 3.1E-06 6.7E-11 77.3 5.6 63 25-103 5-67 (245)
376 PRK15064 ABC transporter ATP-b 98.1 2.4E-06 5.2E-11 88.4 5.4 58 21-94 319-376 (530)
377 TIGR03269 met_CoM_red_A2 methy 98.1 2.2E-06 4.7E-11 88.5 5.0 57 23-95 2-60 (520)
378 PRK11147 ABC transporter ATPas 98.1 2.2E-06 4.8E-11 90.7 5.1 58 22-95 4-61 (635)
379 PRK11147 ABC transporter ATPas 98.1 3.2E-06 7E-11 89.5 6.1 59 20-94 318-376 (635)
380 COG0572 Udk Uridine kinase [Nu 98.1 5.3E-06 1.2E-10 76.6 6.7 41 58-101 7-50 (218)
381 PRK14263 phosphate ABC transpo 98.1 3.2E-06 6.9E-11 79.8 5.3 68 24-104 11-79 (261)
382 PRK08356 hypothetical protein; 98.1 1.2E-05 2.5E-10 72.6 8.7 34 59-94 5-38 (195)
383 PLN03130 ABC transporter C fam 98.1 4.2E-06 9.2E-11 96.9 7.2 58 19-86 612-670 (1622)
384 TIGR02142 modC_ABC molybdenum 98.1 2.5E-06 5.5E-11 84.1 4.7 60 26-104 4-63 (354)
385 PRK04182 cytidylate kinase; Pr 98.1 4.5E-06 9.8E-11 73.1 5.8 33 61-94 2-34 (180)
386 PRK10762 D-ribose transporter 98.1 4.1E-06 8.9E-11 86.1 6.3 63 21-105 257-319 (501)
387 COG3845 ABC-type uncharacteriz 98.1 4.2E-06 9.1E-11 84.8 6.1 78 21-115 4-81 (501)
388 TIGR03574 selen_PSTK L-seryl-t 98.1 6.7E-06 1.4E-10 76.9 7.1 114 61-216 1-118 (249)
389 PLN03232 ABC transporter C fam 98.1 4.6E-06 1E-10 96.0 7.2 57 20-86 613-670 (1495)
390 PRK11144 modC molybdate transp 98.1 3.3E-06 7.2E-11 83.3 5.2 59 26-103 5-63 (352)
391 cd02025 PanK Pantothenate kina 98.1 3.8E-06 8.2E-11 77.7 5.1 34 61-94 1-40 (220)
392 COG1129 MglA ABC-type sugar tr 98.1 4.2E-06 9.2E-11 85.6 5.8 78 21-115 8-85 (500)
393 PRK12338 hypothetical protein; 98.1 3.3E-05 7.1E-10 75.4 11.5 36 58-94 3-39 (319)
394 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 3.4E-06 7.5E-11 87.7 5.0 60 20-95 321-380 (552)
395 COG1134 TagH ABC-type polysacc 98.1 4.4E-06 9.4E-11 78.1 5.1 43 38-94 42-84 (249)
396 PRK10535 macrolide transporter 98.1 4.9E-06 1.1E-10 88.4 6.0 71 21-106 4-76 (648)
397 PRK11819 putative ABC transpor 98.1 3.8E-06 8.3E-11 87.5 5.1 60 20-95 323-382 (556)
398 PRK05480 uridine/cytidine kina 98.1 5.3E-06 1.1E-10 75.4 5.4 38 57-94 4-43 (209)
399 PRK14731 coaE dephospho-CoA ki 98.1 2.9E-06 6.3E-11 77.6 3.4 34 59-94 5-38 (208)
400 COG0488 Uup ATPase components 98.0 9.1E-06 2E-10 84.3 7.3 67 21-103 3-69 (530)
401 PRK09270 nucleoside triphospha 98.0 4.4E-05 9.5E-10 70.6 11.1 28 57-84 31-58 (229)
402 PLN02200 adenylate kinase fami 98.0 9.8E-06 2.1E-10 75.7 6.6 36 58-94 42-77 (234)
403 TIGR01351 adk adenylate kinase 98.0 1E-05 2.2E-10 73.7 6.2 32 62-94 2-33 (210)
404 COG1119 ModF ABC-type molybden 98.0 9E-06 1.9E-10 76.1 5.8 71 20-107 30-100 (257)
405 TIGR01663 PNK-3'Pase polynucle 98.0 2.9E-05 6.2E-10 80.5 10.1 103 57-215 367-469 (526)
406 COG1123 ATPase components of v 98.0 6.8E-06 1.5E-10 84.8 5.4 73 22-105 8-80 (539)
407 COG5265 ATM1 ABC-type transpor 98.0 8.8E-06 1.9E-10 81.3 5.9 71 17-103 258-328 (497)
408 TIGR03415 ABC_choXWV_ATP choli 98.0 6.7E-06 1.5E-10 82.1 5.1 48 38-100 39-86 (382)
409 PF01202 SKI: Shikimate kinase 98.0 3.4E-06 7.4E-11 73.6 2.6 107 68-216 1-107 (158)
410 PRK01184 hypothetical protein; 98.0 1.4E-05 3E-10 71.0 6.6 33 60-94 2-34 (184)
411 cd03238 ABC_UvrA The excision 98.0 6.2E-06 1.3E-10 73.8 4.2 34 37-80 9-42 (176)
412 PLN03073 ABC transporter F fam 98.0 6.4E-06 1.4E-10 88.4 5.1 54 18-83 174-227 (718)
413 PRK14532 adenylate kinase; Pro 98.0 1E-05 2.2E-10 72.1 5.6 33 61-94 2-34 (188)
414 TIGR00957 MRP_assoc_pro multi 98.0 7.3E-06 1.6E-10 94.6 5.7 61 20-94 635-695 (1522)
415 PRK14531 adenylate kinase; Pro 98.0 1.4E-05 3E-10 71.4 6.2 34 60-94 3-36 (183)
416 PTZ00088 adenylate kinase 1; P 98.0 2.8E-05 6E-10 72.5 8.1 34 60-94 7-40 (229)
417 COG4133 CcmA ABC-type transpor 98.0 1.3E-05 2.8E-10 72.4 5.7 54 36-104 15-68 (209)
418 TIGR02173 cyt_kin_arch cytidyl 98.0 1.9E-05 4E-10 68.7 6.5 33 61-94 2-34 (171)
419 TIGR00554 panK_bact pantothena 97.9 4.5E-05 9.7E-10 73.6 9.4 38 57-94 60-103 (290)
420 PRK00889 adenylylsulfate kinas 97.9 8E-05 1.7E-09 65.6 10.2 28 57-84 2-29 (175)
421 TIGR00956 3a01205 Pleiotropic 97.9 1.1E-05 2.3E-10 92.5 5.8 70 22-103 760-831 (1394)
422 cd01428 ADK Adenylate kinase ( 97.9 1.7E-05 3.7E-10 70.5 5.9 32 62-94 2-33 (194)
423 cd02023 UMPK Uridine monophosp 97.9 1.2E-05 2.6E-10 72.3 4.9 34 61-94 1-36 (198)
424 COG0283 Cmk Cytidylate kinase 97.9 6.7E-05 1.5E-09 69.1 9.7 38 60-100 5-42 (222)
425 TIGR01257 rim_protein retinal- 97.9 1.3E-05 2.8E-10 94.1 6.3 70 20-104 927-996 (2272)
426 PF13238 AAA_18: AAA domain; P 97.9 1.3E-05 2.9E-10 65.8 4.7 22 62-83 1-22 (129)
427 TIGR03771 anch_rpt_ABC anchore 97.9 1.2E-05 2.5E-10 74.1 4.8 42 56-102 3-44 (223)
428 PRK06696 uridine kinase; Valid 97.9 1.7E-05 3.7E-10 73.1 5.9 38 57-94 20-61 (223)
429 COG4175 ProV ABC-type proline/ 97.9 1.1E-05 2.5E-10 78.1 4.7 45 57-106 52-96 (386)
430 PRK12339 2-phosphoglycerate ki 97.9 6.4E-05 1.4E-09 68.5 9.4 35 59-94 3-38 (197)
431 PRK00023 cmk cytidylate kinase 97.9 7.4E-05 1.6E-09 69.3 9.7 38 59-99 4-41 (225)
432 COG4181 Predicted ABC-type tra 97.9 2E-05 4.3E-10 70.6 5.5 59 30-103 17-75 (228)
433 COG1137 YhbG ABC-type (unclass 97.9 3.1E-06 6.6E-11 77.3 0.3 86 35-137 16-101 (243)
434 cd00820 PEPCK_HprK Phosphoenol 97.9 1.2E-05 2.6E-10 66.5 3.7 33 38-80 4-36 (107)
435 PRK11860 bifunctional 3-phosph 97.9 6.5E-05 1.4E-09 80.1 9.9 39 59-100 442-480 (661)
436 TIGR00235 udk uridine kinase. 97.9 1.3E-05 2.9E-10 72.8 4.0 38 57-94 4-43 (207)
437 TIGR01257 rim_protein retinal- 97.9 1.9E-05 4.2E-10 92.7 6.2 71 19-104 1935-2005(2272)
438 PRK03846 adenylylsulfate kinas 97.9 8.1E-05 1.8E-09 67.3 9.1 29 56-84 21-49 (198)
439 PRK13409 putative ATPase RIL; 97.8 1.6E-05 3.6E-10 83.6 5.0 59 20-95 339-397 (590)
440 COG4674 Uncharacterized ABC-ty 97.8 6.2E-06 1.4E-10 75.1 1.5 100 22-140 6-106 (249)
441 KOG3347 Predicted nucleotide k 97.8 3.4E-05 7.4E-10 67.4 5.9 37 57-94 5-41 (176)
442 PRK13808 adenylate kinase; Pro 97.8 2.7E-05 5.9E-10 76.3 5.9 33 61-94 2-34 (333)
443 PRK05800 cobU adenosylcobinami 97.8 2.6E-05 5.6E-10 69.4 5.1 91 60-168 2-94 (170)
444 PLN03211 ABC transporter G-25; 97.8 2E-05 4.4E-10 83.9 5.2 55 36-103 81-135 (659)
445 PRK00698 tmk thymidylate kinas 97.8 6.5E-05 1.4E-09 67.3 7.8 27 58-84 2-28 (205)
446 KOG3308 Uncharacterized protei 97.8 2.5E-05 5.5E-10 71.1 5.0 38 59-98 4-41 (225)
447 KOG0060 Long-chain acyl-CoA tr 97.8 3.9E-05 8.6E-10 79.2 7.0 75 7-95 419-493 (659)
448 cd02027 APSK Adenosine 5'-phos 97.8 0.00019 4.1E-09 62.2 9.9 24 61-84 1-24 (149)
449 PRK14528 adenylate kinase; Pro 97.8 4.3E-05 9.3E-10 68.6 5.7 34 60-94 2-35 (186)
450 PTZ00301 uridine kinase; Provi 97.8 2.6E-05 5.7E-10 71.8 4.4 38 60-99 4-47 (210)
451 TIGR01271 CFTR_protein cystic 97.8 4.5E-05 9.7E-10 88.0 7.1 44 38-95 441-484 (1490)
452 COG1101 PhnK ABC-type uncharac 97.7 3.4E-05 7.3E-10 71.3 4.7 53 36-103 19-71 (263)
453 PLN02348 phosphoribulokinase 97.7 5.6E-05 1.2E-09 75.5 6.6 28 57-84 47-74 (395)
454 COG4138 BtuD ABC-type cobalami 97.7 3.6E-05 7.8E-10 69.2 4.6 44 55-104 21-64 (248)
455 PRK13409 putative ATPase RIL; 97.7 2.3E-05 5.1E-10 82.4 4.0 52 27-94 79-130 (590)
456 COG4167 SapF ABC-type antimicr 97.7 4.3E-05 9.4E-10 69.2 5.1 48 38-100 28-75 (267)
457 PRK02496 adk adenylate kinase; 97.7 3.7E-05 8E-10 68.3 4.7 33 61-94 3-35 (184)
458 PRK00081 coaE dephospho-CoA ki 97.7 5.8E-05 1.3E-09 68.2 6.0 33 60-94 3-35 (194)
459 PLN03140 ABC transporter G fam 97.7 3.4E-05 7.5E-10 88.6 5.5 69 21-102 867-946 (1470)
460 TIGR00152 dephospho-CoA kinase 97.7 3E-05 6.4E-10 69.4 4.0 33 61-94 1-33 (188)
461 TIGR00455 apsK adenylylsulfate 97.7 0.00036 7.8E-09 62.0 10.9 29 56-84 15-43 (184)
462 cd02020 CMPK Cytidine monophos 97.7 2.8E-05 6E-10 65.7 3.5 31 61-92 1-31 (147)
463 TIGR00955 3a01204 The Eye Pigm 97.7 4.1E-05 8.9E-10 80.9 5.1 59 33-103 35-93 (617)
464 TIGR00767 rho transcription te 97.7 6.4E-05 1.4E-09 75.4 6.0 55 19-84 128-193 (415)
465 PRK05537 bifunctional sulfate 97.7 0.00017 3.7E-09 75.7 9.3 28 57-84 390-417 (568)
466 COG4598 HisP ABC-type histidin 97.7 6.9E-05 1.5E-09 67.7 5.4 64 22-102 7-70 (256)
467 COG0563 Adk Adenylate kinase a 97.6 3.4E-05 7.4E-10 69.2 3.2 33 61-94 2-34 (178)
468 COG4152 ABC-type uncharacteriz 97.6 5.7E-05 1.2E-09 71.0 4.6 66 22-104 3-68 (300)
469 TIGR03238 dnd_assoc_3 dnd syst 97.6 5.2E-05 1.1E-09 77.4 4.7 51 38-104 21-71 (504)
470 COG4778 PhnL ABC-type phosphon 97.6 7.6E-05 1.7E-09 66.9 5.1 56 37-107 25-84 (235)
471 KOG0707 Guanylate kinase [Nucl 97.6 0.00019 4E-09 66.7 7.8 127 59-220 37-176 (231)
472 COG3709 Uncharacterized compon 97.6 0.0012 2.5E-08 58.7 12.4 116 58-217 4-138 (192)
473 PRK00279 adk adenylate kinase; 97.6 8.6E-05 1.9E-09 67.9 5.6 33 61-94 2-34 (215)
474 PRK07429 phosphoribulokinase; 97.6 0.00011 2.4E-09 72.0 6.6 38 57-94 6-45 (327)
475 cd03270 ABC_UvrA_I The excisio 97.6 4.2E-05 9.1E-10 70.7 3.3 31 37-77 9-39 (226)
476 COG4107 PhnK ABC-type phosphon 97.6 8.2E-05 1.8E-09 66.9 5.0 58 25-99 10-67 (258)
477 PF07931 CPT: Chloramphenicol 97.6 0.00019 4.2E-09 64.2 7.4 127 59-219 1-135 (174)
478 COG4172 ABC-type uncharacteriz 97.6 0.00015 3.2E-09 72.6 7.0 82 7-104 260-352 (534)
479 cd01672 TMPK Thymidine monopho 97.5 0.00028 6.1E-09 62.3 7.7 25 60-84 1-25 (200)
480 PLN02318 phosphoribulokinase/u 97.5 0.00012 2.6E-09 76.6 5.9 36 59-94 65-100 (656)
481 TIGR00956 3a01205 Pleiotropic 97.5 8.3E-05 1.8E-09 85.3 5.1 57 36-103 74-130 (1394)
482 PF01583 APS_kinase: Adenylyls 97.5 0.00051 1.1E-08 60.5 8.9 26 59-84 2-27 (156)
483 COG4178 ABC-type uncharacteriz 97.5 0.00014 3.1E-09 76.1 6.2 57 19-86 390-446 (604)
484 PRK14526 adenylate kinase; Pro 97.5 0.00026 5.6E-09 65.2 7.3 37 62-100 3-39 (211)
485 COG4586 ABC-type uncharacteriz 97.5 8.5E-05 1.8E-09 70.8 4.0 49 38-101 39-87 (325)
486 PLN03140 ABC transporter G fam 97.5 8.2E-05 1.8E-09 85.6 4.6 58 36-105 178-235 (1470)
487 PRK09518 bifunctional cytidyla 97.5 0.00062 1.4E-08 73.2 10.9 39 60-101 2-40 (712)
488 KOG0054 Multidrug resistance-a 97.5 0.00018 3.8E-09 81.5 6.9 68 17-98 514-582 (1381)
489 KOG0061 Transporter, ABC super 97.5 0.00013 2.8E-09 77.2 5.5 72 16-99 20-94 (613)
490 PRK07667 uridine kinase; Provi 97.5 0.00016 3.5E-09 65.2 5.1 36 59-94 17-56 (193)
491 COG4172 ABC-type uncharacteriz 97.5 0.00023 5E-09 71.2 6.5 88 21-121 8-96 (534)
492 PRK12337 2-phosphoglycerate ki 97.5 0.00057 1.2E-08 69.8 9.5 43 58-100 254-297 (475)
493 smart00382 AAA ATPases associa 97.5 0.00011 2.4E-09 59.4 3.6 26 59-84 2-27 (148)
494 COG4170 SapD ABC-type antimicr 97.5 0.00015 3.3E-09 67.0 4.8 79 24-115 8-86 (330)
495 PLN02459 probable adenylate ki 97.4 0.00044 9.6E-09 65.7 7.7 34 60-94 30-63 (261)
496 cd03278 ABC_SMC_barmotin Barmo 97.4 0.00014 3.1E-09 65.9 3.9 27 57-84 21-47 (197)
497 cd01130 VirB11-like_ATPase Typ 97.4 0.00013 2.9E-09 65.3 3.4 29 57-85 23-51 (186)
498 KOG2355 Predicted ABC-type tra 97.4 0.00023 5E-09 65.6 4.8 59 15-84 7-65 (291)
499 PF00485 PRK: Phosphoribulokin 97.4 0.00013 2.9E-09 65.6 3.2 24 61-84 1-24 (194)
500 KOG0927 Predicted transporter 97.4 0.00019 4.1E-09 73.8 4.5 55 21-86 389-443 (614)
No 1
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=5.7e-64 Score=504.06 Aligned_cols=270 Identities=40% Similarity=0.696 Sum_probs=227.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
+++++|+|+||||||||+|+..||+.++ ++|||+|+||||+||||+|+||+.+|+.+|||||+++++|++ .|++.+|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~-~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~ 97 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP-VEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFR 97 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC-eeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHH
Confidence 6678999999999999999999999999 999999999999999999999999999999999999999999 99999999
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------------------C
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------------------D 172 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------------------d 172 (343)
++|..+|++|+++|++||||||||||++||+++.. |
T Consensus 98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~vD 177 (468)
T PLN02748 98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKELD 177 (468)
T ss_pred HHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhhC
Confidence 99999999999999999999999999999998642 1
Q ss_pred cccc----------------cccccCCCccccc--------------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhcc
Q 019312 173 RGLS----------------VFDDRFDSDSVSS--------------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESG 222 (343)
Q Consensus 173 p~~~----------------~~~~~~~~~~~~~--------------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~G 222 (343)
|..+ +|..+ +++++. .++|++++|||++++++|++||++||+.|+++|
T Consensus 178 P~~A~rihpnD~rRI~RALEI~~~T--G~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~G 255 (468)
T PLN02748 178 PVAANRIHPNNHRKINRYLELYATT--GVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAG 255 (468)
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHH--CcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence 1110 11111 122211 246889999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCC--------------------------ccC--cCC
Q 019312 223 MFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPAS--------------------------VEV--KGE 274 (343)
Q Consensus 223 lleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~--------------------------~~~--~~~ 274 (343)
|++||+.|++.+.. .+.+++|+||||||++||+.+.... ++. +..
T Consensus 256 lleEv~~l~~~~~~-------~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (468)
T PLN02748 256 LLDEVYDIYDPGAD-------YTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKIL 328 (468)
T ss_pred HHHHHHHHHhcCCC-------CCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhh
Confidence 99999999986432 2567899999999999998433211 000 135
Q ss_pred hHHHHHHHHHHHHHHHHHH--hhhh----CCCCeeEecchhhHHHhhcCCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312 275 WDPVRRGVYQEARQIDKIL--KLER----AGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE 343 (343)
Q Consensus 275 ~d~~~~~~~~~tRQ~ak~q--~l~~----~gw~i~~ld~t~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~~ 343 (343)
++++++.+..+||||||+| |+++ .+|++||+|+|+++. +++.+.|++.|++||++||++||++
T Consensus 329 l~eaie~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~~~------~~~~~~W~~~V~~pa~~iv~~fL~~ 397 (468)
T PLN02748 329 LDEAIDQVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAIL------CKSEESWNAKVVKPAVEIVRRFLSD 397 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhhhh------hccHhHHHHHhHHHHHHHHHHHHcC
Confidence 7888999999999999988 4554 258999999999863 3456999999999999999999974
No 2
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=1.5e-62 Score=474.32 Aligned_cols=278 Identities=56% Similarity=0.954 Sum_probs=238.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.++++++|+||||||||+|+..||+.++ .+|||+|++|+|+|+||+|+||+.+++.+++||+++.+++.+..|++.+|.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~-~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP-SEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC-CceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 5678999999999999999999999999 899999999999999999999999999999999999999986579999999
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcc-cccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDS-VSSSLRYNCCFLWVDSSLQLLYDYLNKRV 215 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~-~~~~~~~~~~~i~L~~~re~L~~RI~~Rv 215 (343)
+++...|++|+++|++||+|||||||++||+++..||+.+.+.. +++ ++...+|+++++||++++++|++||++||
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~t---g~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rv 196 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSS---GSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRV 196 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhc---CCCccccccCCCeEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988998765422 234 44335688899999999999999999999
Q ss_pred HHHHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCccC------cCChHHHHHHHHHHHHHH
Q 019312 216 DDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEV------KGEWDPVRRGVYQEARQI 289 (343)
Q Consensus 216 ~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~------~~~~d~~~~~~~~~tRQ~ 289 (343)
++|+++||+|||+.|++.++. .. .+.+++|+||||||++||++.+.....+ +..++++++++..+||||
T Consensus 197 d~Ml~~GlldEv~~L~~~~~~---~~--~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~ik~~TrqY 271 (334)
T PLN02165 197 DEMMDSGMFEELAEFYDPVKS---GS--EPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREIKENTCQL 271 (334)
T ss_pred HHHHHCCHHHHHHHHHHccCC---cc--cCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999987553 11 2468999999999999998433211001 124889999999999999
Q ss_pred HHHH--hhhh---CCCCeeEecchhhHHHhhc---CCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312 290 DKIL--KLER---AGWDLRRLDATTAFRMLVN---GDQEWRCVWERQVVEPSVKIVKRFLDE 343 (343)
Q Consensus 290 ak~q--~l~~---~gw~i~~ld~t~~~~~~~~---~~~~~~~~W~~~V~~pa~~iv~~fl~~ 343 (343)
||+| |+++ ..|+++|+|+||+++..+- ++..+.+.|++.|++||++|+++||.+
T Consensus 272 AKRQ~TWfR~~~~~~~~~~~lD~t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~ 333 (334)
T PLN02165 272 AKRQIEKIMKLKSAGWDIKRVDATASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVE 333 (334)
T ss_pred HHHHHHHhcCCcccCCcEEEEechhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcC
Confidence 9988 5665 2589999999999764332 345677999999999999999999975
No 3
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=2.4e-58 Score=441.23 Aligned_cols=231 Identities=23% Similarity=0.292 Sum_probs=198.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
+++|+|+||||||||.||..||+. + +||||+||+|||+||||+|+||+.+|+.+|+|||+|+++|++ .||+++|.++
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~-~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e-~~sv~~f~~~ 80 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-K-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIK-EYNLGIFYKE 80 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-C-CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCC-ceeHHHHHHH
Confidence 469999999999999999999999 5 799999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc----------
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS---------- 176 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~---------- 176 (343)
|.++|++|+++|++||||||||||++||++|.. ||..+
T Consensus 81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~R 160 (300)
T PRK14729 81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYR 160 (300)
T ss_pred HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHH
Confidence 999999999999999999999999999998742 22211
Q ss_pred ------cccccCCCccccc-----ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCccc
Q 019312 177 ------VFDDRFDSDSVSS-----SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLG 245 (343)
Q Consensus 177 ------~~~~~~~~~~~~~-----~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~ 245 (343)
++..+ +++++. ..+|++++++|++|+++|++||++||+.|+++||+|||+.|++.++. .+
T Consensus 161 i~RALEv~~~t--G~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~~-------~~ 231 (300)
T PRK14729 161 IKRSLEVYYQT--GIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGYN-------EN 231 (300)
T ss_pred HHHHHHHHHHh--CCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCC-------CC
Confidence 11111 233332 12478888999999999999999999999999999999999987553 36
Q ss_pred cchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchh
Q 019312 246 VGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATT 309 (343)
Q Consensus 246 ~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~ 309 (343)
.+++|+|||||+++||.. +..+++++.+.+..+|||||||| |+++. ..++|+|..+
T Consensus 232 ~~~~~aIGYkE~~~yl~~-------g~~~l~e~~e~i~~~Tr~yAKRQ~TWfr~~-~~~~w~~~~~ 289 (300)
T PRK14729 232 TPAFKGIGYREFLLWKSR-------PCYMLNDIINLIVKNSFLYVKRQMTFFAKI-PNVLWFHPDD 289 (300)
T ss_pred CCcceeEcHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCeeecCCC
Confidence 889999999999999942 24568999999999999999988 56643 4588998643
No 4
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-58 Score=434.45 Aligned_cols=275 Identities=50% Similarity=0.825 Sum_probs=236.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+.++++|+|+||||||.|+..||..|+ +||||+|+||+|+|++|+|+|++.+|+.||||||++.++++. +|++.+|..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~-~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~-e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP-GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEA-EYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC-ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHh-hccHHHHHH
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999 999999999
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD 217 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~ 217 (343)
+|.++|++|+++|++||++|||++|++||+.+.+||..+++..+. ..+++.++|+||++|++++.++|++|+++|||+
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~--g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~ 161 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNT--GSIPSELRYDCCFLWLDADQAVLFERLDKRVDD 161 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccC--CCCCcccccceEEEEEecchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887776542 345556799999999999999999999999999
Q ss_pred HHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCc---cC-cCChHHHHHHHHHHHHHHHHHH
Q 019312 218 MLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASV---EV-KGEWDPVRRGVYQEARQIDKIL 293 (343)
Q Consensus 218 Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~---~~-~~~~d~~~~~~~~~tRQ~ak~q 293 (343)
||++||+||++++++.... + +..++.++||++|++.|++-++...+ .. ...++++++++.+.|+||||+|
T Consensus 162 Ml~~Gl~eE~~~f~~~~~s----~--~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ 235 (348)
T KOG1384|consen 162 MLESGLLEELRDFYDPYNS----S--YRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQ 235 (348)
T ss_pred HHHcchHHHHHHHhhhhhc----C--ccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987443 1 35668899999999999986553222 00 1125667777777777777665
Q ss_pred -----hhhhCC-CCeeEecchhhHHHhhcCC----chhhhhhhhHhhhHHHHHHHHHhc
Q 019312 294 -----KLERAG-WDLRRLDATTAFRMLVNGD----QEWRCVWERQVVEPSVKIVKRFLD 342 (343)
Q Consensus 294 -----~l~~~g-w~i~~ld~t~~~~~~~~~~----~~~~~~W~~~V~~pa~~iv~~fl~ 342 (343)
++...+ |+++.+|+|+++....... ..+...|+..|..|+.+|+++||.
T Consensus 236 ~~~I~~l~~~~~~~i~~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~ 294 (348)
T KOG1384|consen 236 KRKIEKLFLPRKWDIHRVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLD 294 (348)
T ss_pred HHHHHHhhcCCCccccccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHH
Confidence 344434 9999999999987543322 366899999999999999999985
No 5
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-57 Score=429.83 Aligned_cols=232 Identities=32% Similarity=0.495 Sum_probs=203.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
+++++|+||||||||.|+..||+.++ +||||.||||||+||||+|+||+.+|+.++||||+|+++|.+ .||+.+|.++
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~-~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~ 80 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLG-GEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD 80 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcC-CcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence 57999999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc----------
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS---------- 176 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~---------- 176 (343)
|.+.|++|.++||+||||||||||++||+.|.. ||.++
T Consensus 81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~R 160 (308)
T COG0324 81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQR 160 (308)
T ss_pred HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhH
Confidence 999999999999999999999999999998742 33211
Q ss_pred ------cccccCCCccccc-------c-cCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCC
Q 019312 177 ------VFDDRFDSDSVSS-------S-LRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSV 242 (343)
Q Consensus 177 ------~~~~~~~~~~~~~-------~-~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~ 242 (343)
++..+ ++++++ . .+|++.+++|.++++.|++||+.|+|.|+++||++||+.|+++++.
T Consensus 161 i~RALEv~~~t--Gk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~------ 232 (308)
T COG0324 161 IIRALEVYYLT--GKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLH------ 232 (308)
T ss_pred HHHHHHHHHHH--CCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCC------
Confidence 12212 244432 1 2788999999999999999999999999999999999999998753
Q ss_pred ccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchhh
Q 019312 243 SLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATTA 310 (343)
Q Consensus 243 ~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~~ 310 (343)
.+++++|+|||||+++||++ ..+++++.+.+..+|||||||| |+++ ...++|+|....
T Consensus 233 -~~~~~~~~iGy~e~~~yl~g--------~~~~~ea~~~~~~~TRqyAKRQ~TWfr~-~~~~~w~~~~~~ 292 (308)
T COG0324 233 -LDLPAMQAIGYKEILAYLDG--------GISLEEAIERIKTATRQYAKRQLTWFRN-QLGVHWLDSESP 292 (308)
T ss_pred -ccchHHHhcCHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcc-CcccceeccCCc
Confidence 37899999999999999984 4568999999999999999998 5664 224889987644
No 6
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=2.9e-55 Score=417.90 Aligned_cols=229 Identities=34% Similarity=0.508 Sum_probs=199.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD 140 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~ 140 (343)
+|+|+||||||||+|+..|++.++ ++|||+||+|+|++++|+|+||+.+|+.+++|||++.+++.+ .|++++|..++.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~-~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~ 78 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN-AEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLAL 78 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-CcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHH
Confidence 479999999999999999999998 999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc------------
Q 019312 141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS------------ 176 (343)
Q Consensus 141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~------------ 176 (343)
+.|++++++|++||||||||||++||++|.. ||..+
T Consensus 79 ~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~ 158 (287)
T TIGR00174 79 NAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQ 158 (287)
T ss_pred HHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHH
Confidence 9999999999999999999999999998743 22211
Q ss_pred ----cccccCCCccccc-------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCccc
Q 019312 177 ----VFDDRFDSDSVSS-------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLG 245 (343)
Q Consensus 177 ----~~~~~~~~~~~~~-------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~ 245 (343)
++.. ++++++. .++|++++|||++|+++|++||++||+.|+++||+|||+.|++.+.. .+
T Consensus 159 RALEi~~~--tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~~-------~~ 229 (287)
T TIGR00174 159 RALEVFYA--TGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYDL-------CD 229 (287)
T ss_pred HHHHHHHH--HCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCC-------cC
Confidence 1111 1233321 23588889999999999999999999999999999999999987542 26
Q ss_pred cchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchh
Q 019312 246 VGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATT 309 (343)
Q Consensus 246 ~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~ 309 (343)
.+++|+|||||+++||++ +.+++++.+.+..+||||||+| |+++. .+++|+|+++
T Consensus 230 ~~~~~aIGYkE~~~~l~g--------~~~~~e~ie~i~~~Tr~yAKRQ~TWfR~~-~~~~~~~~~~ 286 (287)
T TIGR00174 230 LPSIQAIGYKEFLLYLEG--------TVSLEDAIERIKCNTRQYAKRQLTWFRKW-SDVLWLDSTD 286 (287)
T ss_pred CchhhhccHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCEEeCCCC
Confidence 789999999999999984 4668999999999999999988 56653 3689999765
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=6.8e-53 Score=405.84 Aligned_cols=229 Identities=35% Similarity=0.558 Sum_probs=199.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
.+++|+|+||||||||+|+..||+.++ ++|||+|++|+|++++|+|+||+.+|+.+++|||++..+|.+ .|++++|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~-~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~-~~s~~~f~~ 80 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLN-GEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTE-SYSVADFQR 80 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCC-CcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhh-cccHHHHHH
Confidence 357999999999999999999999998 999999999999999999999999999999999999999999 999999999
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc---------
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS--------- 176 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~--------- 176 (343)
+|.+.|++++++|++||||||||+|++||+.+.. ||..+
T Consensus 81 ~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~ 160 (307)
T PRK00091 81 DALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQ 160 (307)
T ss_pred HHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCc
Confidence 9999999999999999999999999999987532 23221
Q ss_pred -------cccccCCCccccc------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCc
Q 019312 177 -------VFDDRFDSDSVSS------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVS 243 (343)
Q Consensus 177 -------~~~~~~~~~~~~~------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~ 243 (343)
++..+ +++++. ..+|++++|||++|+++|++||++||+.|+++||+|||+.|++.++.
T Consensus 161 Ri~RAlEi~~~t--G~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~------- 231 (307)
T PRK00091 161 RIIRALEVYELT--GKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYL------- 231 (307)
T ss_pred hhHHHHHHHHHH--CCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCC-------
Confidence 11111 223322 24688999999999999999999999999999999999999987553
Q ss_pred cccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEec
Q 019312 244 LGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLD 306 (343)
Q Consensus 244 ~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld 306 (343)
.+.+++|+|||||+++||++ +.+++++++.+..+||||||+| |++++ .+++|+|
T Consensus 232 ~~~~~~~aIGykE~~~yl~g--------~~s~~e~~e~i~~~Tr~yAKRQ~TWfr~~-~~~~w~~ 287 (307)
T PRK00091 232 PDLPAMRAIGYKELLAYLDG--------EISLEEAIEKIKQATRQYAKRQLTWFRRQ-PDIHWLD 287 (307)
T ss_pred CCCccceeecHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCeeec
Confidence 25789999999999999984 4568999999999999999988 56652 3689998
No 8
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=9.7e-53 Score=416.92 Aligned_cols=239 Identities=27% Similarity=0.432 Sum_probs=199.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.++.+|+|+||||||||||+..|++.++ ++|||.|++|+|++++|+|+||+.+|+.+|+|||+++++|.+ .||+++|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~-~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e-~ySv~~F~ 96 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLN-GEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSD-DYSVGAFF 96 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCC-CCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCC-ceeHHHHH
Confidence 5567999999999999999999999999 899999999999999999999999999999999999999999 99999999
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc-------------------------------------Ccccc---
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY-------------------------------------DRGLS--- 176 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~-------------------------------------dp~~~--- 176 (343)
++|.++|++|+++|++||||||||||++||++|.. || .+
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i 175 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDP-KARSL 175 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCc-HHHhc
Confidence 99999999999999999999999999999998632 33 21
Q ss_pred -------------cccccCCCccccc-----------------------------ccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 177 -------------VFDDRFDSDSVSS-----------------------------SLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 177 -------------~~~~~~~~~~~~~-----------------------------~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
++..+ +++++. .++|++++|+|++||++||+||+.|
T Consensus 176 ~pnD~~Ri~RALEV~~~T--G~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~R 253 (421)
T PLN02840 176 PRNDWYRLRRSLEIIKSS--GSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLR 253 (421)
T ss_pred CCCcHHHHHHHHHHHHHH--CCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 11111 111110 2358888999999999999999999
Q ss_pred HHHHHh--ccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHH---HHHHHHHHHH
Q 019312 215 VDDMLE--SGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVR---RGVYQEARQI 289 (343)
Q Consensus 215 v~~Ml~--~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~---~~~~~~tRQ~ 289 (343)
|++||+ +||++||+.|++.++. . ...+++|+|||||+++||+.... ..++.+++++. +.+..+||||
T Consensus 254 vd~Ml~~~~GLleEV~~Ll~~g~~----~--~~~~a~~aIGYkE~~~yL~~~~~--~~G~~s~ee~~~~~e~i~~~TRqY 325 (421)
T PLN02840 254 CEEMLAGTNGILSEASWLLDLGLL----P--NSNSATRAIGYRQAMEYLLQCRQ--NGGESSPQEFLAFLSKFQTASRNF 325 (421)
T ss_pred HHHHHHcccCHHHHHHHHHHcCCC----c--cccchHHHhcHHHHHHHHHhhcc--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999987653 1 13578999999999999973221 11245677666 8999999999
Q ss_pred HHHH--hhhhCCCCeeEecchh
Q 019312 290 DKIL--KLERAGWDLRRLDATT 309 (343)
Q Consensus 290 ak~q--~l~~~gw~i~~ld~t~ 309 (343)
||+| |+++. ..++|+|+++
T Consensus 326 AKRQ~TWFR~~-~~~~w~~~~~ 346 (421)
T PLN02840 326 AKRQMTWFRNE-PIYHWLDASQ 346 (421)
T ss_pred HHHHHHHhCCC-CCCeEecCCC
Confidence 9988 56653 4589999754
No 9
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=5.2e-47 Score=356.33 Aligned_cols=195 Identities=33% Similarity=0.529 Sum_probs=155.8
Q ss_pred eEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--
Q 019312 94 MQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY-- 171 (343)
Q Consensus 94 ~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~-- 171 (343)
||||+||||+|+||+.+|+.+|||||+|+++|++ .||+++|.++|.++|++|+++|++||||||||||++||++|..
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e-~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~ 79 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDE-EYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADI 79 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS----HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--T
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccC-CCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhh
Confidence 6899999999999999999999999999999999 9999999999999999999999999999999999999998742
Q ss_pred ------------------------------Ccccc----------------cccccCCCcccc-------cccCCceEEE
Q 019312 172 ------------------------------DRGLS----------------VFDDRFDSDSVS-------SSLRYNCCFL 198 (343)
Q Consensus 172 ------------------------------dp~~~----------------~~~~~~~~~~~~-------~~~~~~~~~i 198 (343)
||..+ ++..+ +++++ ..++|++++|
T Consensus 80 p~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~t--G~~~s~~~~~~~~~~~~~~~~i 157 (253)
T PF01715_consen 80 PEVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELT--GKPPSEWQKKQKPPPRYDFLVI 157 (253)
T ss_dssp SSSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHH--SS-HHHHHHCHHHCBSSEEEEE
T ss_pred ccccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhc--CCChhHhhhcccccccCCeEEE
Confidence 33221 11111 23333 1357899999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHH
Q 019312 199 WVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPV 278 (343)
Q Consensus 199 ~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~ 278 (343)
||+++++.|++||++||++|+++||++||+.|++.+.. .+.+++|+|||||+++||++ +.+++++
T Consensus 158 ~L~~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~-------~~~~~~~aIGYkE~~~~l~g--------~~~~~e~ 222 (253)
T PF01715_consen 158 GLDRDREELYERINKRVDEMLEQGLLEEVRALLERGLP-------PDLPAMQAIGYKEFIDYLEG--------EISLEEA 222 (253)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGG-------TTSCGGGSTTHHHHHHHHTT--------SSCHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC-------CcchhceeeehHHHHHhhcC--------CCCHHHH
Confidence 99999999999999999999999999999999998753 36889999999999999985 4568999
Q ss_pred HHHHHHHHHHHHHHH--hhhhCCCCeeEecc
Q 019312 279 RRGVYQEARQIDKIL--KLERAGWDLRRLDA 307 (343)
Q Consensus 279 ~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~ 307 (343)
.+....+||||||+| |+++ ...++|+|.
T Consensus 223 ~e~i~~~TrqyAKRQ~TWfr~-~~~~~w~d~ 252 (253)
T PF01715_consen 223 IERIKTNTRQYAKRQRTWFRN-QPNIHWIDI 252 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TSSEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCeeeeC
Confidence 999999999999988 5665 345999985
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.92 E-value=1e-24 Score=198.11 Aligned_cols=178 Identities=20% Similarity=0.313 Sum_probs=134.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
++++|+||||+|||.++..||+.++ ++||+.|++|+|.+++++|++|+++|+.++++.+++.....++.+++.++.+..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g-~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG-APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC-CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHH
Confidence 5899999999999999999999999 999999999999999999999999999999999999998888899999999999
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEe-CCHHHHHHHHHHHHHHH
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVD-SSLQLLYDYLNKRVDDM 218 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~-~~re~L~~RI~~Rv~~M 218 (343)
...+.++.+ ++.+|+.|||...++.+... + ++. .+|...+..+. ++++....|+.+||.+|
T Consensus 81 i~~v~~~~~-~~~~IlEGGSISLl~~m~~~---~----~w~----------~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 81 ISEVNSYSA-HGGLILEGGSISLLNCMAQD---P----YWS----------LDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp HHHHHTTTT-SSEEEEEE--HHHHHHHHH----T----TTS----------SSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhccc-cCceEEeCchHHHHHHHHhc---c----ccc----------CCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 999998887 77899999999999999753 2 221 24555566555 57888999999999999
Q ss_pred Hh-----ccHHHHHHHHHhccccccCCCCccccchhhhc-ChHHHHHHHhhCC
Q 019312 219 LE-----SGMFEELAEFFDSDRMRNNNSVSLGVGLLKAI-GVPEFERYFKMYP 265 (343)
Q Consensus 219 l~-----~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaI-GykE~~~yl~~~~ 265 (343)
+. .++++|+..++..+. .+++++.| ||+.+++|.+.+.
T Consensus 143 L~p~~~~~Sll~EL~~lW~~p~---------~r~~ledIdGyr~~i~~a~~~~ 186 (233)
T PF01745_consen 143 LRPDSSGPSLLEELVALWNDPA---------LRPILEDIDGYRYIIRFARKHQ 186 (233)
T ss_dssp HS--SSS--HHHHHHHHHTSTT---------HHHHHTTSTTHHHHHHHHHHTT
T ss_pred cCCCCCCCcHHHHHHHHHhCcc---------ccchHhhhccHHHHHHHHHHhC
Confidence 96 489999999997633 57888888 9999999998654
No 11
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.26 E-value=7.1e-12 Score=113.13 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.++++++|+||||||||||++.|++.++ . +|...+++|.+|...+..+.+|++++...+.. .+..+.|.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~-~~~~~~~~ 71 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-N---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEE-MIENGEFL 71 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-c---------ceeccCccccCCCCCCcCCCeeEEcCHHHHHH-HHHcCCcE
Confidence 5689999999999999999999999875 3 47778889999988888888888776544433 22222222
Q ss_pred ----------hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312 137 ----------LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL 206 (343)
Q Consensus 137 ----------~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~ 206 (343)
......|....+.|+.+|+..-- -....+... ....+.++.++++.++
T Consensus 72 ~~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~-~g~~~l~~~---------------------~~~~~~I~i~~~s~~~ 129 (205)
T PRK00300 72 EWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDW-QGARQVKKK---------------------MPDAVSIFILPPSLEE 129 (205)
T ss_pred EEEEECCccccCcHHHHHHHHHcCCeEEEeCCH-HHHHHHHHh---------------------CCCcEEEEEECcCHHH
Confidence 22356788888899988774311 111111110 0112345556778999
Q ss_pred HHHHHHHHH
Q 019312 207 LYDYLNKRV 215 (343)
Q Consensus 207 L~~RI~~Rv 215 (343)
+.+|+..|.
T Consensus 130 l~~Rl~~R~ 138 (205)
T PRK00300 130 LERRLRGRG 138 (205)
T ss_pred HHHHHHhcC
Confidence 999999885
No 12
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.24 E-value=1.3e-11 Score=111.28 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
++.+++|+||+|||||||++.|.+..+ . ++.-.+.+|.+|.+.|..|+.||+++.-.+.. .+..+.|.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~-~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~-~i~~~~f~e 71 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP-D---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKK-GIADGEFLE 71 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC-c---------cccccCccCCCCCCCCCCCceeEeCCHHHHHH-HHHcCCeEE
Confidence 578999999999999999999988764 2 23346789999999999999999998777665 555555655
Q ss_pred hh----------hHHHHHHHhcCCeeEEEc
Q 019312 138 QA----------DNAISDIISRKKTPLLVG 157 (343)
Q Consensus 138 ~a----------~~~i~~i~~~g~~pIlvG 157 (343)
.+ .+.|+++.+.|+++|+.-
T Consensus 72 ~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~ 101 (186)
T PRK14737 72 WAEVHDNYYGTPKAFIEDAFKEGRSAIMDI 101 (186)
T ss_pred EEEECCeeecCcHHHHHHHHHcCCeEEEEc
Confidence 44 477899999999988863
No 13
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.22 E-value=1.2e-11 Score=109.39 Aligned_cols=124 Identities=20% Similarity=0.163 Sum_probs=82.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
|++++|+||||||||||++.|++.++ .. +-...++|.+|...+..+..|++++...+.. .+..++|...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~-~~---------~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 69 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP-NL---------KFSISATTRKPRPGEVDGVDYFFVSKEEFEE-MIAAGEFLEW 69 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc-cc---------cccccceeeCCCCCCcCCcEEEEecHHHHHH-HHHcCCcEEE
Confidence 57999999999999999999999876 31 1233556778887788888888877544433 3344444432
Q ss_pred h----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHH
Q 019312 139 A----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLY 208 (343)
Q Consensus 139 a----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~ 208 (343)
. ...|..+.+.|+++|+....+-. +.+... ......++++.++.+.+.
T Consensus 70 ~~~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~-~~~~~~---------------------~~~~~~i~~~~~~~e~~~ 127 (180)
T TIGR03263 70 AEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGA-RQVKKK---------------------FPDAVSIFILPPSLEELE 127 (180)
T ss_pred EEECCeeeCCcHHHHHHHHHCCCeEEEECCHHHH-HHHHHh---------------------CCCcEEEEEECCCHHHHH
Confidence 2 56788888999998885432211 111110 001134556678899999
Q ss_pred HHHHHHH
Q 019312 209 DYLNKRV 215 (343)
Q Consensus 209 ~RI~~Rv 215 (343)
+|+.+|.
T Consensus 128 ~Rl~~r~ 134 (180)
T TIGR03263 128 RRLRKRG 134 (180)
T ss_pred HHHHHcC
Confidence 9998885
No 14
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=1.7e-11 Score=109.84 Aligned_cols=124 Identities=22% Similarity=0.190 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+|.+++|+||||+|||||.+.|....+ +.--.+.+|.+|++.|..|+.|||++.-.+.. .+...+|.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-----------l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~-~i~~~~fLE 70 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-----------LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEE-LIERDEFLE 70 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-----------eEEEEEeccCCCCCCCcCCceeEeCCHHHHHH-HHhcCCcEE
Confidence 589999999999999999999987653 24456779999999999999999999887777 667777766
Q ss_pred hh----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHH
Q 019312 138 QA----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLL 207 (343)
Q Consensus 138 ~a----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L 207 (343)
.| ...++++.+.|+..|+.= |- .+ ...+....+--+.+|.++|+.++|
T Consensus 71 ~a~~~gnyYGT~~~~ve~~~~~G~~vildI--------------d~------qG--a~qvk~~~p~~v~IFi~pPs~eeL 128 (191)
T COG0194 71 WAEYHGNYYGTSREPVEQALAEGKDVILDI--------------DV------QG--ALQVKKKMPNAVSIFILPPSLEEL 128 (191)
T ss_pred EEEEcCCcccCcHHHHHHHHhcCCeEEEEE--------------eh------HH--HHHHHHhCCCeEEEEEcCCCHHHH
Confidence 55 344555555555444421 00 00 011112222124456677889999
Q ss_pred HHHHHHHH
Q 019312 208 YDYLNKRV 215 (343)
Q Consensus 208 ~~RI~~Rv 215 (343)
.+||..|-
T Consensus 129 ~~RL~~Rg 136 (191)
T COG0194 129 ERRLKGRG 136 (191)
T ss_pred HHHHHccC
Confidence 99999884
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.05 E-value=9.3e-10 Score=107.54 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=72.3
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.++++.+++-.|.... +++++++++ .+|++++|+||||||||||++.+|+...+. .|.+ .+.|
T Consensus 2 ~~i~l~~v~K~yg~~~--~l~~i~l~i----------~~Gef~vllGPSGcGKSTlLr~IAGLe~~~----~G~I-~i~g 64 (338)
T COG3839 2 AELELKNVRKSFGSFE--VLKDVNLDI----------EDGEFVVLLGPSGCGKSTLLRMIAGLEEPT----SGEI-LIDG 64 (338)
T ss_pred cEEEEeeeEEEcCCce--eeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECC
Confidence 3678889988888654 899999998 999999999999999999999999988744 7888 5889
Q ss_pred ccccCCCCCccccccc--CccccccccCCC
Q 019312 100 LDITTNKIPSHKRHNV--PHHLLGEFVPDD 127 (343)
Q Consensus 100 l~I~T~kp~~~e~~~i--~h~li~~~~~~~ 127 (343)
.+++...|......-| .|-|+..+.+.+
T Consensus 65 ~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 65 RDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred EECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 9998766654444444 456666655555
No 16
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.04 E-value=2.1e-10 Score=98.25 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=71.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh---
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL--- 137 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~--- 137 (343)
+++|+||||||||||++.|++.++ .. + ..-...+|.+|+..+..+++||+++...+.. .+..+.|.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~-~~------~--~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~-~~~~~~f~e~~~ 70 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD-PN------F--GFSVSHTTRKPRPGEVDGVDYHFVSKEEFER-LIENGEFLEWAE 70 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC-cc------c--eecccccccCCCCCccCCceeEEeCHHHHHH-HHHcCCeEEEEE
Confidence 478999999999999999999876 21 1 1234457888988899999999998776665 555555544
Q ss_pred -------hhhHHHHHHHhcCCeeEEEcCchhhHHHHH
Q 019312 138 -------QADNAISDIISRKKTPLLVGGSNSFIYSLL 167 (343)
Q Consensus 138 -------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl 167 (343)
...+.++++.+.|++||+.. +...++.|.
T Consensus 71 ~~~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~ 106 (137)
T cd00071 71 FHGNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVK 106 (137)
T ss_pred EcCEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHH
Confidence 56788999999999888765 444444443
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.02 E-value=2.4e-10 Score=107.78 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=60.2
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.+++|+|. ...+++++++++ ++|++++|+||||||||||+++|++.++|. .|.+ .+.|.
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i----------~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~----~G~V-~l~g~ 64 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSI----------PKGEITGILGPNGSGKSTLLKCLAGLLKPK----SGEV-LLDGK 64 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEe----------cCCcEEEEECCCCCCHHHHHHHHhccCCCC----CCEE-EECCC
Confidence 367889999999 445899999998 889999999999999999999999999865 6888 48898
Q ss_pred cccCCCC
Q 019312 101 DITTNKI 107 (343)
Q Consensus 101 ~I~T~kp 107 (343)
+|.+-++
T Consensus 65 ~i~~~~~ 71 (258)
T COG1120 65 DIASLSP 71 (258)
T ss_pred chhhcCH
Confidence 8876443
No 18
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.00 E-value=7.9e-10 Score=98.62 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
++++++|+||+|||||||+..|...++ . .+ ......+|.+|...|..|+.||+++.-.+.. ....+.|.+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~-~------~~--~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~-~~~~~~fie 70 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP-D------KF--GRVVSHTTRPPRPGEVDGVDYHFVSKEEFER-MIKAGEFIE 70 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST-T------TE--EEEEEEESS-GGTTS-TTTSEEE--HHHHHH-HHHTTHEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc-c------cc--ccceeecccCCcccccCCcceEEEeechhhh-hhccccEEE
Confidence 368999999999999999999999887 2 22 3345668899998999999999987665544 333333332
Q ss_pred ----------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEE-eCCHHH
Q 019312 138 ----------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWV-DSSLQL 206 (343)
Q Consensus 138 ----------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L-~~~re~ 206 (343)
.....|..+.+.|+.+|+.-. .--++.|-. . ...+.++++ .++.+.
T Consensus 71 ~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~-~~g~~~L~~---------------------~-~~~~~~IfI~~~s~~~ 127 (183)
T PF00625_consen 71 YGEYDGNYYGTSKSAIDKVLEEGKHCILDVD-PEGVKQLKK---------------------A-GFNPIVIFIKPPSPEV 127 (183)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTTEEEEEET-HHHHHHHHH---------------------C-TTTEEEEEEEESSHHH
T ss_pred EeeecchhhhhccchhhHhhhcCCcEEEEcc-HHHHHHHHh---------------------c-ccCceEEEEEccchHH
Confidence 235778888899999888643 111222221 0 233455666 567899
Q ss_pred HHHHHHHHH
Q 019312 207 LYDYLNKRV 215 (343)
Q Consensus 207 L~~RI~~Rv 215 (343)
|.+|+..|-
T Consensus 128 l~~~l~~r~ 136 (183)
T PF00625_consen 128 LKRRLRRRG 136 (183)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHhccc
Confidence 999887664
No 19
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.3e-10 Score=103.86 Aligned_cols=93 Identities=24% Similarity=0.324 Sum_probs=75.2
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccccccc
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNV 115 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i 115 (343)
...|+++++++ ++|++.+|+||||||||||+..|++.-. .+|. .|.+ +++|.||+...|.+..+.|+
T Consensus 17 keILkgvnL~v----------~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt-~G~I-~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 17 KEILKGVNLTV----------KEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVT-EGEI-LFDGEDILELSPDERARAGI 83 (251)
T ss_pred hhhhcCcceeE----------cCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEe-cceE-EECCcccccCCHhHHHhcCC
Confidence 36899999998 8999999999999999999999999876 6654 5777 59999999988877677777
Q ss_pred CccccccccCCCc-ccChhhhhhhhhHHHH
Q 019312 116 PHHLLGEFVPDDV-EFTPDDFRLQADNAIS 144 (343)
Q Consensus 116 ~h~li~~~~~~~~-~~s~~~f~~~a~~~i~ 144 (343)
++.+..|.++ ..+..+|.+.|.++..
T Consensus 84 ---fLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 84 ---FLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred ---EEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 4555555552 4678889888776643
No 20
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.98 E-value=1.6e-09 Score=98.88 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
..+.+++|+||+|||||||+..|.+... . +..-...+|..+...|..|..||+++...+.. .+..+.|.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~---------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~-~~~~~~~l 79 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-P---------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFRE-MISQNELL 79 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-c---------ccccccccCCCCCCCCCCCCeeeeCCHHHHHH-HHHcCCcE
Confidence 5678999999999999999999976532 1 12234456666777788899999887655433 33223333
Q ss_pred hh----------hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceE-EEEEeCCHH
Q 019312 137 LQ----------ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCC-FLWVDSSLQ 205 (343)
Q Consensus 137 ~~----------a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~~re 205 (343)
+. ....|....+.|+++|+. ++.-++..|-.. ..+.. ++.++++.+
T Consensus 80 e~~~~~g~~YGt~~~~i~~~~~~g~~vi~~-~~~~g~~~l~~~----------------------~pd~~~if~~pps~e 136 (206)
T PRK14738 80 EWAEVYGNYYGVPKAPVRQALASGRDVIVK-VDVQGAASIKRL----------------------VPEAVFIFLAPPSMD 136 (206)
T ss_pred EEEEEcCceecCCHHHHHHHHHcCCcEEEE-cCHHHHHHHHHh----------------------CCCeEEEEEeCCCHH
Confidence 32 235788888889876664 343343333210 01233 344567889
Q ss_pred HHHHHHHHHHH
Q 019312 206 LLYDYLNKRVD 216 (343)
Q Consensus 206 ~L~~RI~~Rv~ 216 (343)
+|.+|+..|-+
T Consensus 137 ~l~~Rl~~R~~ 147 (206)
T PRK14738 137 ELTRRLELRRT 147 (206)
T ss_pred HHHHHHHHcCC
Confidence 99999999853
No 21
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.97 E-value=2.3e-09 Score=95.84 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=84.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChh-----
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPD----- 133 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~----- 133 (343)
+++++|+||+||||+||+..|...++ +. +..-...+|..+.+.|..|+.||+++.-.+.. .+..+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~-------~~--~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~-~i~~g~fve~ 71 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP-------DA--FERVVSHTTRPPRPGEVNGVDYHFVSREEFED-DIKSGLFLEW 71 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC-------cc--eEeeeeecCCCCCCCCcCCceEEECCHHHHHH-HHHcCCeEEE
Confidence 57899999999999999999998875 22 24455667888888899999999887554433 22222
Q ss_pred -----hhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEE-eCCHHHH
Q 019312 134 -----DFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWV-DSSLQLL 207 (343)
Q Consensus 134 -----~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L-~~~re~L 207 (343)
++.-.....|.++.+.|+.+|+.+. .-.++.|-.. ..+..++++ .++.+.|
T Consensus 72 ~~~~g~~YGt~~~~i~~~~~~~~~~ild~~-~~~~~~l~~~----------------------~~~~~vIfi~~~s~~~l 128 (184)
T smart00072 72 GEYSGNYYGTSKETIRQVAEQGKHCLLDID-PQGVKQLRKA----------------------QLYPIVIFIAPPSSEEL 128 (184)
T ss_pred EEEcCcCcccCHHHHHHHHHcCCeEEEEEC-HHHHHHHHHh----------------------CCCcEEEEEeCcCHHHH
Confidence 2333445678888888998888764 2222222110 112345666 4788899
Q ss_pred HHHHHHHH
Q 019312 208 YDYLNKRV 215 (343)
Q Consensus 208 ~~RI~~Rv 215 (343)
.+|+.+|-
T Consensus 129 ~~rl~~R~ 136 (184)
T smart00072 129 ERRLRGRG 136 (184)
T ss_pred HHHHHhcC
Confidence 99998874
No 22
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.96 E-value=4.4e-09 Score=94.17 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChh-----
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPD----- 133 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~----- 133 (343)
+.+++|+||||||||||++.|++.++ .+++..|+. + +..+... ...++.+...++.. .+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~~~~~~~~~-------~-~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~ 68 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-TQLLVAHRY-------I-TRPASAG---SENHIALSEQEFFT-RAGQNLFALS 68 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-CeEEEcCEE-------C-CCccchh---HHhheeEcHHHHHH-HHHCCchhhH
Confidence 57899999999999999999999876 344333332 1 1111111 11111111111111 00001
Q ss_pred -----hhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHH
Q 019312 134 -----DFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLY 208 (343)
Q Consensus 134 -----~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~ 208 (343)
.+..... .+++..+.|+. ||++|+.-+.+.+... + +-...+++|+++.+.|.
T Consensus 69 ~~~~g~~yg~~~-~~~~~l~~g~~-VI~~G~~~~~~~~~~~--------~-------------~~~~~vi~l~~s~e~l~ 125 (186)
T PRK10078 69 WHANGLYYGVGI-EIDLWLHAGFD-VLVNGSRAHLPQARAR--------Y-------------QSALLPVCLQVSPEILR 125 (186)
T ss_pred HHHhCCccCCcH-HHHHHHhCCCE-EEEeChHHHHHHHHHH--------c-------------CCCEEEEEEeCCHHHHH
Confidence 1111122 35666677875 6668877665555421 0 12356789999999999
Q ss_pred HHHHHH
Q 019312 209 DYLNKR 214 (343)
Q Consensus 209 ~RI~~R 214 (343)
+|+..|
T Consensus 126 ~RL~~R 131 (186)
T PRK10078 126 QRLENR 131 (186)
T ss_pred HHHHHh
Confidence 999887
No 23
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.1e-09 Score=114.36 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=64.4
Q ss_pred CCccceeecccCCcCCcccc-cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRRR-SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.-++.|+|.+|+|.||+++. ++++++++++ ++|++++++||||+||||++..|-+.++|. +|++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti----------~pGe~vALVGPSGsGKSTiasLL~rfY~Pt----sG~I- 525 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTI----------RPGEVVALVGPSGSGKSTIASLLLRFYDPT----SGRI- 525 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeee----------CCCCEEEEECCCCCCHHHHHHHHHHhcCCC----CCeE-
Confidence 46799999999999998863 4999999998 899999999999999999999999999976 7888
Q ss_pred EEeccccc
Q 019312 96 VYKGLDIT 103 (343)
Q Consensus 96 vy~gl~I~ 103 (343)
..+|.||-
T Consensus 526 llDG~~i~ 533 (716)
T KOG0058|consen 526 LLDGVPIS 533 (716)
T ss_pred EECCeehh
Confidence 57788774
No 24
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.92 E-value=3.5e-09 Score=102.04 Aligned_cols=130 Identities=16% Similarity=0.258 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceE------------------EEecccccCCCCCcccccccCc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQ------------------VYKGLDITTNKIPSHKRHNVPH 117 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~q------------------vy~gl~I~T~kp~~~e~~~i~h 117 (343)
+.+-+|+|.|+|||||||+|..||..++ .. +|+.|+++ .|..+++.+++|+.++ |
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~-~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~ 163 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLG-IRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----P 163 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----h
Confidence 3456889999999999999999999998 54 89999998 7888888888777544 6
Q ss_pred cccccccCCCcccChhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEE
Q 019312 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF 197 (343)
Q Consensus 118 ~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~ 197 (343)
++.++..+.+ .++++ +...|.....+|.. +|+-|.++. |.. ...- ... .-+++.
T Consensus 164 ~l~g~~~~~~-~v~~g-----i~~~I~~~~~~g~s-~IiEGvhl~----------P~~--i~~~-----~~~--~~~~i~ 217 (301)
T PRK04220 164 VIYGFERHVE-PVSVG-----VEAVIERALKEGIS-VIIEGVHIV----------PGF--IKEK-----YLE--NPNVFM 217 (301)
T ss_pred hhhhHHHHHH-HHHHH-----HHHHHHHHHHhCCc-EEEecCCCC----------HHH--HHHh-----hhc--CCCEEE
Confidence 7777777655 44444 66778888878875 555555542 221 0000 000 012344
Q ss_pred EEEe-CCHHHHHHHHHHHHHHH
Q 019312 198 LWVD-SSLQLLYDYLNKRVDDM 218 (343)
Q Consensus 198 i~L~-~~re~L~~RI~~Rv~~M 218 (343)
++|. .+.+...+|...|...|
T Consensus 218 ~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 218 FVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred EEEEECCHHHHHHHHHHHHhhh
Confidence 5555 67899999999999998
No 25
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.92 E-value=2.9e-09 Score=96.01 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=71.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
|.|.+|+-.|+.+ +.+|+++++++ .+|+++.|+||||+|||||++.|.+...|. .|++ .+.|.|
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i----------~~Gef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i-~~~~~d 65 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHI----------PKGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKI-LVNGHD 65 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEee----------cCceEEEEECCCCCCHHHHHHHHHhhhcCC----CceE-EECCee
Confidence 6789999999999 66999999998 999999999999999999999999988765 7888 588999
Q ss_pred ccCCCCCc----cccccc---CccccccccCCC
Q 019312 102 ITTNKIPS----HKRHNV---PHHLLGEFVPDD 127 (343)
Q Consensus 102 I~T~kp~~----~e~~~i---~h~li~~~~~~~ 127 (343)
++.-+-.. ..+-|+ .|+|+......+
T Consensus 66 l~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvye 98 (223)
T COG2884 66 LSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYE 98 (223)
T ss_pred cccccccccchhhheeeeEeeeccccccchHhh
Confidence 87544321 122233 577777665555
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=2.4e-09 Score=100.73 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=70.1
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.+++|.|... + +|+++++++ .+|.+++|+||||||||||++.+.+.+.|. .|++. ..|
T Consensus 3 ~~i~v~nl~v~y~~~-~-vl~~i~l~v----------~~G~~~~iiGPNGaGKSTLlK~iLGll~p~----~G~i~-~~g 65 (254)
T COG1121 3 PMIEVENLTVSYGNR-P-VLEDISLSV----------EKGEITALIGPNGAGKSTLLKAILGLLKPS----SGEIK-IFG 65 (254)
T ss_pred cEEEEeeeEEEECCE-e-eeeccEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCcCC----cceEE-Ecc
Confidence 357899999999976 5 999999998 889999999999999999999999988866 78885 445
Q ss_pred ccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 100 LDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 100 l~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
.++...++ .....-+|.+. ..+..- ..++.++...
T Consensus 66 ~~~~~~~~-~~~IgYVPQ~~--~~d~~f-P~tV~d~V~~ 100 (254)
T COG1121 66 KPVRKRRK-RLRIGYVPQKS--SVDRSF-PITVKDVVLL 100 (254)
T ss_pred cccccccc-CCeEEEcCccc--ccCCCC-CcCHHHHHHc
Confidence 55432221 11223345543 233333 5666666543
No 27
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.91 E-value=2e-09 Score=108.39 Aligned_cols=79 Identities=23% Similarity=0.213 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312 8 PPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE 87 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e 87 (343)
+|. ++|-...++.+++.+|+|.|.++.| +++++++++ .+|+.++++||||+||||+++.|.+.++
T Consensus 525 ~P~-a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v----------~pGktvAlVG~SGaGKSTimRlLfRffd--- 589 (790)
T KOG0056|consen 525 LPG-APPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTV----------QPGKTVALVGPSGAGKSTIMRLLFRFFD--- 589 (790)
T ss_pred CCC-CCCccccCCeEEEEEeEEecCCCCc-eeecceEEe----------cCCcEEEEECCCCCchhHHHHHHHHHhh---
Confidence 444 3444567799999999999999988 999999998 8899999999999999999999999998
Q ss_pred eecCCceEEEeccccc
Q 019312 88 IINSDKMQVYKGLDIT 103 (343)
Q Consensus 88 IIs~Ds~qvy~gl~I~ 103 (343)
+|+|++. +.|.||.
T Consensus 590 -v~sGsI~-iDgqdIr 603 (790)
T KOG0056|consen 590 -VNSGSIT-IDGQDIR 603 (790)
T ss_pred -ccCceEE-EcCchHH
Confidence 3589994 8898874
No 28
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.89 E-value=1.6e-09 Score=115.28 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=68.9
Q ss_pred CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+.+++++++.+|+|+|..+.|.++.++++++ ++|+.++|+|+||||||||++.|.+.+.|. .|++
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I----------~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~----~G~I 530 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPDDPPVLEDLSLEI----------PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ----QGRI 530 (709)
T ss_pred ccccCceEEEEEEEEEeCCCCcchhhceeEEe----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE
Confidence 34677999999999999999889999999998 899999999999999999999999999865 7899
Q ss_pred EEEecccccCC
Q 019312 95 QVYKGLDITTN 105 (343)
Q Consensus 95 qvy~gl~I~T~ 105 (343)
.+.|.|+..-
T Consensus 531 -~~dg~dl~~i 540 (709)
T COG2274 531 -LLDGVDLNDI 540 (709)
T ss_pred -EECCEeHHhc
Confidence 5999988643
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.5e-09 Score=99.98 Aligned_cols=99 Identities=25% Similarity=0.405 Sum_probs=75.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+.+.+++|.|+.+ ..+++++++++ .+++.++|+||||||||||++.|++.+.|. .+.+ ...|.+
T Consensus 4 i~~~~l~~~y~~~-~~~l~~v~~~i----------~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~----~G~v-~~~g~~ 67 (235)
T COG1122 4 IEAENLSFRYPGR-KAALKDVSLEI----------EKGERVLLIGPNGSGKSTLLKLLNGLLKPT----SGEV-LVDGLD 67 (235)
T ss_pred EEEEEEEEEcCCC-ceeeeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCcCcCC----CCEE-EECCee
Confidence 5788999999988 67999999998 899999999999999999999999999865 5777 477877
Q ss_pred ccCCCCCccccc--cc-----CccccccccCCCcccChhhhh
Q 019312 102 ITTNKIPSHKRH--NV-----PHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 102 I~T~kp~~~e~~--~i-----~h~li~~~~~~~~~~s~~~f~ 136 (343)
+...+...+-+. |+ .++++.....+++.|...++.
T Consensus 68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 653222222222 22 467777666666677766664
No 30
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.3e-09 Score=107.03 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=65.4
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.+|+|.||..++.+|+++++++ .+|+-|+|+|+|||||||++..|++.++|. +|+++ ..|.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l----------~~GEkvAIlG~SGsGKSTllqLl~~~~~~~----~G~i~-~~g~ 400 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTL----------AQGEKVAILGRSGSGKSTLLQLLAGAWDPQ----QGSIT-LNGV 400 (573)
T ss_pred eeeeccceeecCCCccchhhccceee----------cCCCeEEEECCCCCCHHHHHHHHHhccCCC----CCeee-ECCc
Confidence 78999999999999999999999998 999999999999999999999999999854 89995 7888
Q ss_pred cccCCCC
Q 019312 101 DITTNKI 107 (343)
Q Consensus 101 ~I~T~kp 107 (343)
++..-++
T Consensus 401 ~~~~l~~ 407 (573)
T COG4987 401 EIASLDE 407 (573)
T ss_pred ChhhCCh
Confidence 8865543
No 31
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.85 E-value=1.2e-08 Score=90.65 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=75.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
...|+|+||+||||||+++.|++.++ ..+++.|... +++.+. +.....+ .++...|+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~-~~~vd~D~~i--------------~~~~g~-----~i~~~~~-~~g~~~fr~~ 62 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEI--------------EKRTGA-----DIGWVFD-VEGEEGFRDR 62 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC-CcEEECCchH--------------HHHhCc-----CHhHHHH-HhCHHHHHHH
Confidence 45799999999999999999999998 8888888641 111111 1111122 4566788887
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN 212 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~ 212 (343)
..+.+.++...+..+|.+||+... +|.... .+.....++||+.+.+.+.+||.
T Consensus 63 e~~~l~~l~~~~~~vi~~ggg~v~---------~~~~~~------------~l~~~~~vv~L~~~~e~~~~Ri~ 115 (172)
T PRK05057 63 EEKVINELTEKQGIVLATGGGSVK---------SRETRN------------RLSARGVVVYLETTIEKQLARTQ 115 (172)
T ss_pred HHHHHHHHHhCCCEEEEcCCchhC---------CHHHHH------------HHHhCCEEEEEeCCHHHHHHHHh
Confidence 788888888777777777776432 111100 01112358999999999999985
No 32
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.83 E-value=5e-09 Score=107.91 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=61.6
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
...++++.+|+|.|+...+ +|+++++++ ++|+.++|+||||||||||++.|++.++|. .|++ .+
T Consensus 331 ~~~~I~~~~vsf~Y~~~~~-vL~~isl~i----------~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~----~G~I-~i 394 (529)
T TIGR02868 331 GKPTLELRDLSFGYPGSPP-VLDGVSLDL----------PPGERVAILGPSGSGKSTLLMLLTGLLDPL----QGEV-TL 394 (529)
T ss_pred CCceEEEEEEEEecCCCCc-eeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EE
Confidence 3457999999999986544 999999998 999999999999999999999999999865 6888 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.|+..
T Consensus 395 ~g~~i~~ 401 (529)
T TIGR02868 395 DGVSVSS 401 (529)
T ss_pred CCEEhhh
Confidence 7887754
No 33
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.80 E-value=6.8e-09 Score=92.39 Aligned_cols=132 Identities=21% Similarity=0.354 Sum_probs=89.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
.-|+++|+.||||||+.+.||+.++ ..+++.|..- +++.+ .++-+..+ ...-..|++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~-~~F~D~D~~I--------------e~~~g-----~sI~eIF~-~~GE~~FR~~E 61 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN-LPFIDTDQEI--------------EKRTG-----MSIAEIFE-EEGEEGFRRLE 61 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC-CCcccchHHH--------------HHHHC-----cCHHHHHH-HHhHHHHHHHH
Confidence 4689999999999999999999999 8888877661 11111 12222333 56778899999
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH-HHHHHH
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN-KRVDDM 218 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~-~Rv~~M 218 (343)
.+.+.++...+...|-.||.... ++++--+ +.-...++||+++.+.|++|++ ++..=.
T Consensus 62 ~~vl~~l~~~~~~ViaTGGG~v~---------~~enr~~------------l~~~g~vv~L~~~~e~l~~Rl~~~~~RPl 120 (172)
T COG0703 62 TEVLKELLEEDNAVIATGGGAVL---------SEENRNL------------LKKRGIVVYLDAPFETLYERLQRDRKRPL 120 (172)
T ss_pred HHHHHHHhhcCCeEEECCCcccc---------CHHHHHH------------HHhCCeEEEEeCCHHHHHHHhccccCCCc
Confidence 99999999888766666765332 1211000 1112468999999999999998 443444
Q ss_pred HhccHH-HHHHHHHhc
Q 019312 219 LESGMF-EELAEFFDS 233 (343)
Q Consensus 219 l~~Gll-eEv~~l~~~ 233 (343)
+..+-- +++++|++.
T Consensus 121 l~~~~~~~~l~~L~~~ 136 (172)
T COG0703 121 LQTEDPREELEELLEE 136 (172)
T ss_pred ccCCChHHHHHHHHHH
Confidence 544444 667777764
No 34
>PLN02772 guanylate kinase
Probab=98.80 E-value=6.8e-09 Score=103.19 Aligned_cols=125 Identities=23% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
..++++|+||+|||||||++.|.+.++ .. + ..-...+|.+|.+.|..|+.|||++.-.+.. .+..+.|.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p-~~------~--~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~-~i~~g~FlE 203 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP-SM------F--GFSVSHTTRAPREMEKDGVHYHFTERSVMEK-EIKDGKFLE 203 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc-cc------c--cccccccCCCCcccccCCceEeeCCHHHHHH-HHHhCccce
Confidence 567999999999999999999988765 21 1 2234668999988899998888887444444 444444444
Q ss_pred ----------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHH
Q 019312 138 ----------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLL 207 (343)
Q Consensus 138 ----------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L 207 (343)
...+.++.+.+.|+.+|+. +|+... +.+.......+.+|.++++.++|
T Consensus 204 ~~e~~Gn~YGTsk~~V~~vl~~Gk~vILd--------------LD~qGa--------r~Lr~~~l~~v~IFI~PPSlEeL 261 (398)
T PLN02772 204 FASVHGNLYGTSIEAVEVVTDSGKRCILD--------------IDVQGA--------RSVRASSLEAIFIFICPPSMEEL 261 (398)
T ss_pred eeeecCccccccHHHHHHHHHhCCcEEEe--------------CCHHHH--------HHHHHhcCCeEEEEEeCCCHHHH
Confidence 3357888888899988764 233321 00000011124566778889999
Q ss_pred HHHHHHH
Q 019312 208 YDYLNKR 214 (343)
Q Consensus 208 ~~RI~~R 214 (343)
.+||..|
T Consensus 262 e~RL~~R 268 (398)
T PLN02772 262 EKRLRAR 268 (398)
T ss_pred HHHHHhc
Confidence 9999888
No 35
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.79 E-value=2.5e-08 Score=88.17 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC----cccCh--
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD----VEFTP-- 132 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~----~~~s~-- 132 (343)
+++++|+||+|||||||++.|+..++ . .+.+. |- ...+|.+.. ..+..++.++...... ..|..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~-~----~~~~~-~~-~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA-G----DPRVH-FV-RRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSW 70 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-c----CCcEE-Ee-eEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEE
Confidence 46899999999999999999999876 2 12332 21 122222211 1223333222111111 00100
Q ss_pred ---hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHH
Q 019312 133 ---DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYD 209 (343)
Q Consensus 133 ---~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~ 209 (343)
..+..... .+....+.|...|+.|+ +-+...+... ..+..++||+++.+.+.+
T Consensus 71 ~~~~~~~g~~~-~i~~~~~~g~~vv~~g~-~~~~~~~~~~----------------------~~~~~~i~l~~~~~~~~~ 126 (179)
T TIGR02322 71 QAHGLSYGIPA-EIDQWLEAGDVVVVNGS-RAVLPEARQR----------------------YPNLLVVNITASPDVLAQ 126 (179)
T ss_pred eecCccccChH-HHHHHHhcCCEEEEECC-HHHHHHHHHH----------------------CCCcEEEEEECCHHHHHH
Confidence 01111111 34555667877666665 3343332210 013467899999999999
Q ss_pred HHHHH
Q 019312 210 YLNKR 214 (343)
Q Consensus 210 RI~~R 214 (343)
||..|
T Consensus 127 Rl~~R 131 (179)
T TIGR02322 127 RLAAR 131 (179)
T ss_pred HHHHc
Confidence 99988
No 36
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.78 E-value=7.4e-09 Score=101.77 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=71.5
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.+++=.|- ...+++++++++ .+|++++|+|||||||||++++||+...|. .|++ .+.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i----------~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~----~G~I-~l~G 66 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDI----------KKGEFVTLLGPSGCGKTTLLRMIAGFEQPS----SGEI-LLDG 66 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeee----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECC
Confidence 4567777777776 344789999998 999999999999999999999999988754 7888 5889
Q ss_pred ccccCCCCCccccccc--CccccccccCCC-cccChh
Q 019312 100 LDITTNKIPSHKRHNV--PHHLLGEFVPDD-VEFTPD 133 (343)
Q Consensus 100 l~I~T~kp~~~e~~~i--~h~li~~~~~~~-~~~s~~ 133 (343)
.+|+.-.|.......| .|-|+..+.+.+ +.|...
T Consensus 67 ~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk 103 (352)
T COG3842 67 EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred EECCCCChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence 9998654433222223 466666665554 234444
No 37
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.76 E-value=1.4e-08 Score=88.28 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
+++..|+|+|++||||||+++.||+.++ ..+++.|.+ ... ..+.+ +-+. .+ ......|.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~-~~~~d~d~~--~~~------------~~g~~--~~~~---~~-~~g~~~~~ 60 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-YDFIDTDHL--IEA------------RAGKS--IPEI---FE-EEGEAAFR 60 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEChHH--HHH------------HcCCC--HHHH---HH-HHCHHHHH
Confidence 3567999999999999999999999998 778887765 110 01110 0000 11 23445677
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV 215 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv 215 (343)
....+.+.++.......|.+||+..+-..... .+.-...+++|+++.+.+.+|+.+|.
T Consensus 61 ~~~~~~~~~l~~~~~~vi~~g~~~~~~~~~r~---------------------~l~~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 61 ELEEEVLAELLARHNLVISTGGGAVLREENRA---------------------LLRERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCEeecHHHHH---------------------HHHhCCEEEEEECCHHHHHHHhcCCC
Confidence 77777888887666666667775443211110 00012467889999999999998764
No 38
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.76 E-value=8.9e-09 Score=93.84 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=55.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~ 66 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHI----------TKGEMVFLVGHSGAGKSTFLKLILGIEKPT----RGKI-RFNGQD 66 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEe
Confidence 4678888888654334899999998 899999999999999999999999998754 6888 477776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 67 ~~ 68 (216)
T TIGR00960 67 LT 68 (216)
T ss_pred hh
Confidence 64
No 39
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.76 E-value=1.2e-08 Score=108.44 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=63.4
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..++++.+|+|.|+...+.+++++++++ ++|+.++|+|+||||||||++.|++.+.|. .|++ .+.
T Consensus 449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i----------~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~----~G~I-~id 513 (686)
T TIGR03797 449 SGAIEVDRVTFRYRPDGPLILDDVSLQI----------EPGEFVAIVGPSGSGKSTLLRLLLGFETPE----SGSV-FYD 513 (686)
T ss_pred CceEEEEEEEEEcCCCCccceeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EEC
Confidence 3579999999999866666999999998 999999999999999999999999999865 7888 588
Q ss_pred cccccCC
Q 019312 99 GLDITTN 105 (343)
Q Consensus 99 gl~I~T~ 105 (343)
|.|+..-
T Consensus 514 g~~i~~~ 520 (686)
T TIGR03797 514 GQDLAGL 520 (686)
T ss_pred CEEcCcC
Confidence 8888643
No 40
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.75 E-value=1e-08 Score=109.31 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=63.1
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+...+.+++++++++ ++|+.++|+||||||||||++.|++.++|. .|++ .+.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i----------~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~----~G~I-~id 539 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTL----------QPGQRVALVGGSGSGKSTIAKLVAGLYQPW----SGEI-LFD 539 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EEC
Confidence 4679999999999976666999999998 899999999999999999999999999865 6888 488
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.|+..
T Consensus 540 g~~i~~ 545 (710)
T TIGR03796 540 GIPREE 545 (710)
T ss_pred CEeHHH
Confidence 888754
No 41
>PRK13946 shikimate kinase; Provisional
Probab=98.75 E-value=1.5e-08 Score=90.73 Aligned_cols=131 Identities=19% Similarity=0.334 Sum_probs=80.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
+..|+|+|+.||||||+++.||+.++ .++++.|.+ .. +..+. +.....+ .++...|...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg-~~~id~D~~--~~------------~~~g~-----~~~e~~~-~~ge~~~~~~ 68 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG-LPFLDADTE--IE------------RAARM-----TIAEIFA-AYGEPEFRDL 68 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-CCeECcCHH--HH------------HHhCC-----CHHHHHH-HHCHHHHHHH
Confidence 46899999999999999999999998 888888864 11 01111 0001111 3455667777
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH-
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD- 217 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~- 217 (343)
..+.+.++...+.. ||++|.|.|+ .+.. + . .+.-+.+.|||++|.+.+.+|+..|-..
T Consensus 69 e~~~l~~l~~~~~~-Vi~~ggg~~~--------~~~~---r-----~----~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp 127 (184)
T PRK13946 69 ERRVIARLLKGGPL-VLATGGGAFM--------NEET---R-----A----AIAEKGISVWLKADLDVLWERVSRRDTRP 127 (184)
T ss_pred HHHHHHHHHhcCCe-EEECCCCCcC--------CHHH---H-----H----HHHcCCEEEEEECCHHHHHHHhcCCCCCC
Confidence 77888888877765 5555544331 1110 0 0 0011245799999999999999877542
Q ss_pred HHh-ccHHHHHHHHH
Q 019312 218 MLE-SGMFEELAEFF 231 (343)
Q Consensus 218 Ml~-~GlleEv~~l~ 231 (343)
|+. ....+.++.++
T Consensus 128 ~~~~~~~~~~i~~~~ 142 (184)
T PRK13946 128 LLRTADPKETLARLM 142 (184)
T ss_pred cCCCCChHHHHHHHH
Confidence 222 22334455444
No 42
>PTZ00243 ABC transporter; Provisional
Probab=98.74 E-value=1.2e-08 Score=117.22 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=65.8
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|..+++++.+|+|+|+.+.+.+|+++++++ ++|+.|+|+|+||||||||+..|.+.+.+. .|++ .
T Consensus 1304 ~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I----------~~GekVaIVGrTGSGKSTLl~lLlrl~~p~----~G~I-~ 1368 (1560)
T PTZ00243 1304 VQAGSLVFEGVQMRYREGLPLVLRGVSFRI----------APREKVGIVGRTGSGKSTLLLTFMRMVEVC----GGEI-R 1368 (1560)
T ss_pred CCCCeEEEEEEEEEeCCCCCceeecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-E
Confidence 456789999999999988777999999998 899999999999999999999999998854 7888 5
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.||.+-
T Consensus 1369 IDG~di~~i 1377 (1560)
T PTZ00243 1369 VNGREIGAY 1377 (1560)
T ss_pred ECCEEcccC
Confidence 889988654
No 43
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.74 E-value=1.1e-08 Score=93.26 Aligned_cols=67 Identities=22% Similarity=0.201 Sum_probs=55.1
Q ss_pred eecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 23 SSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 23 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i----------~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~ 66 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSI----------EKGEFVAIVGPSGSGKSTLLNILGGLDRPT----SGEV-RVDGT 66 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEE----------cCCCEEEEEcCCCCCHHHHHHHHhCCcCCC----ceeE-EECCE
Confidence 5678888886531 34899999998 889999999999999999999999998754 6888 47787
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 67 ~~~~ 70 (218)
T cd03255 67 DISK 70 (218)
T ss_pred ehhh
Confidence 7654
No 44
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.74 E-value=1.3e-08 Score=92.93 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=55.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~~ 65 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNV----------YKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAY-INGYS 65 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE-ECCEe
Confidence 3567888888753234899999998 899999999999999999999999998754 68884 67776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 ~~ 67 (220)
T cd03263 66 IR 67 (220)
T ss_pred cc
Confidence 64
No 45
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=2e-08 Score=97.86 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=59.4
Q ss_pred cceeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 20 QHYSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
..+++.+++|.|+... ..+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i----------~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~----~G~I~- 84 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTF----------EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK----YGTIQ- 84 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCeEE-
Confidence 3589999999997532 34899999998 899999999999999999999999998754 78884
Q ss_pred EecccccC
Q 019312 97 YKGLDITT 104 (343)
Q Consensus 97 y~gl~I~T 104 (343)
+.|.+++.
T Consensus 85 i~g~~~~~ 92 (320)
T PRK13631 85 VGDIYIGD 92 (320)
T ss_pred ECCEEccc
Confidence 77877754
No 46
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.73 E-value=1.8e-08 Score=104.90 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=62.0
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..++++.+|+|.|+...+..+.++++++ ++|+.++|+|+||||||||++.|++.++|. .|.+ .+.
T Consensus 339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i----------~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~----~G~I-~i~ 403 (582)
T PRK11176 339 KGDIEFRNVTFTYPGKEVPALRNINFKI----------PAGKTVALVGRSGSGKSTIANLLTRFYDID----EGEI-LLD 403 (582)
T ss_pred CCeEEEEEEEEecCCCCCccccCceEEe----------CCCCEEEEECCCCCCHHHHHHHHHhccCCC----CceE-EEC
Confidence 4579999999999876556999999998 899999999999999999999999999864 6888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 404 g~~i~~ 409 (582)
T PRK11176 404 GHDLRD 409 (582)
T ss_pred CEEhhh
Confidence 887753
No 47
>PRK13948 shikimate kinase; Provisional
Probab=98.72 E-value=2.2e-08 Score=90.09 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.++..|+|+|+.||||||+++.||+.++ ..+|+.|.. +- +..+. ++.+... .+....|+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg-~~~iD~D~~-ie-------------~~~g~-----si~~if~-~~Ge~~fR 66 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM-LHFIDTDRY-IE-------------RVTGK-----SIPEIFR-HLGEAYFR 66 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEECCHH-HH-------------HHHhC-----CHHHHHH-HhCHHHHH
Confidence 3467999999999999999999999998 888888865 11 11111 0011112 34567888
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
+...+++.++...+...|.+||...- +|+.- .. +.-...++||+++.+.|.+||..+-.
T Consensus 67 ~~E~~~l~~l~~~~~~VIa~GgG~v~---------~~~n~--------~~----l~~~g~vV~L~~~~e~l~~Rl~~~~R 125 (182)
T PRK13948 67 RCEAEVVRRLTRLDYAVISLGGGTFM---------HEENR--------RK----LLSRGPVVVLWASPETIYERTRPGDR 125 (182)
T ss_pred HHHHHHHHHHHhcCCeEEECCCcEEc---------CHHHH--------HH----HHcCCeEEEEECCHHHHHHHhcCCCC
Confidence 88888888887777766667764221 22110 00 01123578999999999999954322
Q ss_pred HHHhc-cHHHHHHHHHhc
Q 019312 217 DMLES-GMFEELAEFFDS 233 (343)
Q Consensus 217 ~Ml~~-GlleEv~~l~~~ 233 (343)
-++.. ...+++.++++.
T Consensus 126 Pll~~~~~~~~l~~l~~~ 143 (182)
T PRK13948 126 PLLQVEDPLGRIRTLLNE 143 (182)
T ss_pred CCCCCCChHHHHHHHHHH
Confidence 22221 123555555543
No 48
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.72 E-value=1.5e-08 Score=105.48 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=62.9
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
..++++++.+|+|.|+.+.+ +++++++++ ++|+.++|+||||||||||++.|.+.+++. .|++.+
T Consensus 324 ~~~~~I~f~~vsf~y~~~~~-vl~~is~~i----------~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~----~G~I~i 388 (567)
T COG1132 324 DTIGSIEFENVSFSYPGKKP-VLKDISFSI----------EPGEKVAIVGPSGSGKSTLIKLLLRLYDPT----SGEILI 388 (567)
T ss_pred CCCCeEEEEEEEEEcCCCCc-cccCceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CCeEEE
Confidence 45577999999999997434 899999998 999999999999999999999999999854 688854
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
.|.||..-
T Consensus 389 -dg~dI~~i 396 (567)
T COG1132 389 -DGIDIRDI 396 (567)
T ss_pred -CCEehhhc
Confidence 78888643
No 49
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.72 E-value=1.9e-08 Score=103.57 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=61.3
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.++++.+|+|.||...+.+++++++++ ++|+.++|+||||||||||++.|++..+|. .|++ .+.|
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~I-~~~g 383 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTV----------PPGERVALVGPSGAGKSTLLNLLLGFVDPT----EGSI-AVNG 383 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECC
Confidence 479999999999976556899999998 999999999999999999999999999865 6888 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 384 ~~i~~ 388 (529)
T TIGR02857 384 VPLAD 388 (529)
T ss_pred Eehhh
Confidence 77753
No 50
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.72 E-value=1.4e-08 Score=92.28 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=54.5
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~-~~~l~~~sl~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~i 65 (214)
T cd03292 2 EFINVTKTYPNG-TAALDGINISI----------SAGEFVFLVGPSGAGKSTLLKLIYKEELPT----SGTI-RVNGQDV 65 (214)
T ss_pred EEEEEEEEeCCC-ceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEEc
Confidence 567788888644 34899999998 889999999999999999999999998754 6888 4777777
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
.+
T Consensus 66 ~~ 67 (214)
T cd03292 66 SD 67 (214)
T ss_pred cc
Confidence 54
No 51
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.72 E-value=1.9e-08 Score=105.00 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=62.5
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
....+++.+|+|.|+...+.+++++++++ ++|+.++|+||||||||||++.|++..+|. .|++ .+
T Consensus 335 ~~~~i~~~~v~f~y~~~~~~il~~i~~~i----------~~G~~~aivG~sGsGKSTL~~ll~g~~~p~----~G~I-~i 399 (574)
T PRK11160 335 DQVSLTLNNVSFTYPDQPQPVLKGLSLQI----------KAGEKVALLGRTGCGKSTLLQLLTRAWDPQ----QGEI-LL 399 (574)
T ss_pred CCCeEEEEEEEEECCCCCCcceecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EE
Confidence 34679999999999876555899999998 899999999999999999999999999865 7888 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 400 ~g~~i~~ 406 (574)
T PRK11160 400 NGQPIAD 406 (574)
T ss_pred CCEEhhh
Confidence 8887754
No 52
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.6e-08 Score=96.45 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=59.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+...+.+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~----~G~i-~~~g~~ 70 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSV----------YEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTI-TVGGMV 70 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE-EECCEE
Confidence 7889999999754444899999998 899999999999999999999999998854 7888 488988
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+.+.
T Consensus 71 i~~~ 74 (279)
T PRK13635 71 LSEE 74 (279)
T ss_pred CCcC
Confidence 8653
No 53
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.72 E-value=1.7e-08 Score=92.24 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=56.8
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i----------~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i~-~~g 66 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSI----------GKGEIVAIVGSSGSGKSTLLHLLGGLDNPT----SGEVL-FNG 66 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE-ECC
Confidence 46778888886432 34899999998 899999999999999999999999998754 78884 778
Q ss_pred ccccCC
Q 019312 100 LDITTN 105 (343)
Q Consensus 100 l~I~T~ 105 (343)
.++.+.
T Consensus 67 ~~~~~~ 72 (221)
T TIGR02211 67 QSLSKL 72 (221)
T ss_pred EEhhhc
Confidence 777543
No 54
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.71 E-value=1.8e-08 Score=89.47 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=55.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+...+.+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i-~~~g~~ 65 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLEL----------KQGEKIALLGRSGSGKSTLLQLLTGDLKPQ----QGEI-TLDGVP 65 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CCEE-EECCEE
Confidence 3567888888755345899999998 899999999999999999999999998754 7888 477776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 ~~ 67 (178)
T cd03247 66 VS 67 (178)
T ss_pred HH
Confidence 64
No 55
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.71 E-value=2.2e-08 Score=107.06 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=62.3
Q ss_pred CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
...++++.+|+|.||.++ +.+++++++++ ++|+.++|+||||||||||++.|++.++|. .|++ .
T Consensus 475 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i----------~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~----~G~I-~ 539 (711)
T TIGR00958 475 LEGLIEFQDVSFSYPNRPDVPVLKGLTFTL----------HPGEVVALVGPSGSGKSTVAALLQNLYQPT----GGQV-L 539 (711)
T ss_pred CCCeEEEEEEEEECCCCCCCccccCceEEE----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCEE-E
Confidence 346799999999999653 45899999998 999999999999999999999999999865 6888 4
Q ss_pred EecccccC
Q 019312 97 YKGLDITT 104 (343)
Q Consensus 97 y~gl~I~T 104 (343)
+.|.|+..
T Consensus 540 idg~~i~~ 547 (711)
T TIGR00958 540 LDGVPLVQ 547 (711)
T ss_pred ECCEEHHh
Confidence 78887754
No 56
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.5e-08 Score=103.34 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=64.0
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
...+|++.+|+|.|.+.++ +|+++++++ ++|+-++|+|+|||||||+++.|.+.+. . .|++ ..
T Consensus 348 ~~~~I~F~dV~f~y~~k~~-iL~gvsf~I----------~kGekVaIvG~nGsGKSTilr~LlrF~d-~----sG~I-~I 410 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPKRK-VLKGVSFTI----------PKGEKVAIVGSNGSGKSTILRLLLRFFD-Y----SGSI-LI 410 (591)
T ss_pred CCCcEEEEeeEEEeCCCCc-eecceeEEe----------cCCCEEEEECCCCCCHHHHHHHHHHHhc-c----CCcE-EE
Confidence 3467999999999997766 899999998 9999999999999999999999999998 5 7999 58
Q ss_pred ecccccCCC
Q 019312 98 KGLDITTNK 106 (343)
Q Consensus 98 ~gl~I~T~k 106 (343)
.|.++.+..
T Consensus 411 dG~dik~~~ 419 (591)
T KOG0057|consen 411 DGQDIKEVS 419 (591)
T ss_pred CCeeHhhhC
Confidence 899986544
No 57
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.6e-08 Score=95.94 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=58.9
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
+|+.+++.++++.|+... .+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+
T Consensus 3 ~~~~l~~~~l~~~~~~~~-~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~ 66 (272)
T PRK15056 3 QQAGIVVNDVTVTWRNGH-TALRDASFTV----------PGGSIAALVGVNGSGKSTLFKALMGFVRLA----SGKI-SI 66 (272)
T ss_pred hhceEEEEeEEEEecCCc-EEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EE
Confidence 466789999999997433 3899999998 899999999999999999999999998754 6877 37
Q ss_pred eccccc
Q 019312 98 KGLDIT 103 (343)
Q Consensus 98 ~gl~I~ 103 (343)
.|.++.
T Consensus 67 ~g~~i~ 72 (272)
T PRK15056 67 LGQPTR 72 (272)
T ss_pred CCEEhH
Confidence 777663
No 58
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.9e-08 Score=92.97 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=57.2
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g 70 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSI----------GEGEMMAIVGSSGSGKSTLLHLLGGLDTPT----SGDV-IFNG 70 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECC
Confidence 67889999997532 34899999998 889999999999999999999999998754 6888 4777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 71 ~~i~~ 75 (233)
T PRK11629 71 QPMSK 75 (233)
T ss_pred EEcCc
Confidence 77653
No 59
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.70 E-value=2.2e-08 Score=91.71 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=56.3
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+... +.+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g 66 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSI----------KKGETLGLVGESGSGKSTLARAILGLLKPT----SGSII-FDG 66 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-ECC
Confidence 46788999886542 24899999998 899999999999999999999999998754 78884 777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 67 ~~~~~ 71 (228)
T cd03257 67 KDLLK 71 (228)
T ss_pred EEccc
Confidence 77754
No 60
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.70 E-value=4.2e-08 Score=91.43 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=59.1
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
++..++++.|+.+. -.+|+++++++ .+|+.++|+|+||||||||++.|++...|. .|++ .+.|
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i----------~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~----~G~I-~~~G 68 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEI----------ERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSI-LLDG 68 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEe----------cCCCEEEEEcCCCCCHHHHHHHHhcccCCC----CceE-EECC
Confidence 56677888887665 12899999998 999999999999999999999999998865 7999 5888
Q ss_pred ccccCCCCC
Q 019312 100 LDITTNKIP 108 (343)
Q Consensus 100 l~I~T~kp~ 108 (343)
.++...++.
T Consensus 69 ~~~~~~~~~ 77 (252)
T COG1124 69 KPLAPKKRA 77 (252)
T ss_pred cccCccccc
Confidence 776654443
No 61
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.70 E-value=2.2e-08 Score=91.43 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=57.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++++.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~ 66 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSI----------KPGEKVGIVGRTGSGKSSLLLALFRLVELS----SGSI-LIDGV 66 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEE----------CCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CCEE-EECCE
Confidence 47788999999865445899999998 889999999999999999999999988754 6887 46776
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 67 ~~~ 69 (221)
T cd03244 67 DIS 69 (221)
T ss_pred EhH
Confidence 653
No 62
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.70 E-value=2.5e-08 Score=90.42 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=60.0
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|.+..+++.++++.|+......++++++++ .+|++++|+||||||||||++.|++..++. .|++ .
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~ 66 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKV----------KAGEKIGIVGRTGAGKSTLILALFRFLEAE----EGKI-E 66 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCeE-E
Confidence 344668899999999754334899999998 899999999999999999999999998754 6888 4
Q ss_pred Eeccccc
Q 019312 97 YKGLDIT 103 (343)
Q Consensus 97 y~gl~I~ 103 (343)
+.|.++.
T Consensus 67 ~~g~~~~ 73 (207)
T cd03369 67 IDGIDIS 73 (207)
T ss_pred ECCEEhH
Confidence 7777764
No 63
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.5e-08 Score=92.58 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=60.3
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.+++-.||.+.. .|.++++.+ ++|++++|+||||||||||+++|++..++. .|++ .+.|
T Consensus 2 ~~i~~~nl~k~yp~~~~-aL~~Vnl~I----------~~GE~VaiIG~SGaGKSTLLR~lngl~d~t----~G~i-~~~g 65 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ-ALKDVNLEI----------NQGEMVAIIGPSGAGKSTLLRSLNGLVDPT----SGEI-LFNG 65 (258)
T ss_pred ceEEEeeeeeecCCCce-eeeeEeEEe----------CCCcEEEEECCCCCcHHHHHHHHhcccCCC----cceE-Eecc
Confidence 35788999999995544 899999998 999999999999999999999999987754 7888 4778
Q ss_pred ccccCCC
Q 019312 100 LDITTNK 106 (343)
Q Consensus 100 l~I~T~k 106 (343)
.++...+
T Consensus 66 ~~i~~~~ 72 (258)
T COG3638 66 VQITKLK 72 (258)
T ss_pred cchhccc
Confidence 8876543
No 64
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.9e-08 Score=91.20 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=57.8
Q ss_pred eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+.+.+++|.|+.+ ...+++++++++ .+|++++|+||||||||||++.|++..++. -.+.|.+ .+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~~~~G~i-~i~g 71 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVV----------KPGEMVLVLGRPGSGCSTLLKALANRTEGN-VSVEGDI-HYNG 71 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEE----------CCCcEEEEECCCCCCHHHHHHHhcccCCCC-CCcceEE-EECC
Confidence 5688999999975 345899999998 899999999999999999999999998621 1136777 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++.+
T Consensus 72 ~~~~~ 76 (202)
T cd03233 72 IPYKE 76 (202)
T ss_pred EECcc
Confidence 77754
No 65
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.69 E-value=1.6e-08 Score=93.46 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=61.0
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
+..+++-.|-. -.+|+++++++ .+|++++|+||||+|||||++++++..++. .|++ .|.|.||
T Consensus 5 ~v~~l~~~YG~--~~~L~gvsl~v----------~~Geiv~llG~NGaGKTTlLkti~Gl~~~~----~G~I-~~~G~di 67 (237)
T COG0410 5 EVENLSAGYGK--IQALRGVSLEV----------ERGEIVALLGRNGAGKTTLLKTIMGLVRPR----SGRI-IFDGEDI 67 (237)
T ss_pred eEEeEeecccc--eeEEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeeE-EECCeec
Confidence 45566666654 44899999998 999999999999999999999999999843 7999 6999999
Q ss_pred cCCCCCccccccc
Q 019312 103 TTNKIPSHKRHNV 115 (343)
Q Consensus 103 ~T~kp~~~e~~~i 115 (343)
+..+|...-+.|+
T Consensus 68 t~~p~~~r~r~Gi 80 (237)
T COG0410 68 TGLPPHERARLGI 80 (237)
T ss_pred CCCCHHHHHhCCe
Confidence 8766544444555
No 66
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=2.1e-08 Score=91.13 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=54.5
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|.++
T Consensus 2 ~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~~~ 64 (213)
T cd03259 2 ELKGLSKTYGS--VRALDDLSLTV----------EPGEFLALLGPSGCGKTTLLRLIAGLERPD----SGEIL-IDGRDV 64 (213)
T ss_pred eeeeeEEEeCC--eeeecceeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE-ECCEEc
Confidence 56778888864 34899999998 899999999999999999999999998754 78884 778777
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (213)
T cd03259 65 TG 66 (213)
T ss_pred Cc
Confidence 53
No 67
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=2e-08 Score=93.08 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=56.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~ 65 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDI----------PSGELVALLGPSGSGKTTLLRLIAGLERPD----SGTI-LFGGED 65 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence 678899999874 34899999998 899999999999999999999999998754 6888 478877
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (239)
T cd03296 66 ATD 68 (239)
T ss_pred CCc
Confidence 653
No 68
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.69 E-value=1.9e-08 Score=107.04 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=62.2
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|+|+...+.+++++++++ ++|+.++|+|+||||||||++.|++.++|. .|++ .+.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i----------~~G~~iaIvG~sGsGKSTLlklL~gl~~p~----~G~I-~id 525 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTI----------RPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSV-LLD 525 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EEC
Confidence 4679999999999876666999999998 899999999999999999999999999865 6888 477
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.|+..
T Consensus 526 g~~l~~ 531 (694)
T TIGR03375 526 GVDIRQ 531 (694)
T ss_pred CEEhhh
Confidence 887753
No 69
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.68 E-value=2.3e-08 Score=92.44 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=55.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.+...+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~ 65 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRI----------KPGEVVGIVGRSGSGKSTLTKLIQRFYVPE----NGRV-LVDGHD 65 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-EECCee
Confidence 3567888888654445899999998 899999999999999999999999998754 6888 477777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 ~~ 67 (237)
T cd03252 66 LA 67 (237)
T ss_pred hH
Confidence 64
No 70
>PLN03130 ABC transporter C family member; Provisional
Probab=98.68 E-value=2.5e-08 Score=115.02 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|.++.+++.+|+|+|++..+.+|+++++++ ++|+.++|+|+||||||||+..|.+.+.|. .|++ .
T Consensus 1233 p~~g~I~f~nVsf~Y~~~~~~VL~~is~~I----------~~GekVaIVGrSGSGKSTLl~lL~rl~~p~----~G~I-~ 1297 (1622)
T PLN03130 1233 PSSGSIKFEDVVLRYRPELPPVLHGLSFEI----------SPSEKVGIVGRTGAGKSSMLNALFRIVELE----RGRI-L 1297 (1622)
T ss_pred CCCCcEEEEEEEEEeCCCCCceecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCcCCCC----CceE-E
Confidence 456789999999999877667999999998 999999999999999999999999998854 6888 5
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.||.+-
T Consensus 1298 IDG~dI~~i 1306 (1622)
T PLN03130 1298 IDGCDISKF 1306 (1622)
T ss_pred ECCEecccC
Confidence 889998643
No 71
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=3e-08 Score=92.76 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=54.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+.+.+++..|.. -.+++++++++ .+|++++|+||||||||||.+.+|+...|. .|.+ ...|.+
T Consensus 4 l~i~~v~~~f~~--~~vl~~i~L~v----------~~GEfvsilGpSGcGKSTLLriiAGL~~p~----~G~V-~~~g~~ 66 (248)
T COG1116 4 LEIEGVSKSFGG--VEVLEDINLSV----------EKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEV-LLDGRP 66 (248)
T ss_pred EEEEeeEEEeCc--eEEeccceeEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCcc
Confidence 456677666665 55899999998 999999999999999999999999999865 6888 477777
Q ss_pred c
Q 019312 102 I 102 (343)
Q Consensus 102 I 102 (343)
+
T Consensus 67 v 67 (248)
T COG1116 67 V 67 (248)
T ss_pred c
Confidence 7
No 72
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.67 E-value=2.8e-08 Score=90.61 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=55.7
Q ss_pred eeecccCCcCCcccc--cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRRR--SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+...+ .+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g 66 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTV----------KPGEVTGLLGPNGAGKTTTLRMLAGLLEPD----AGFA-TVDG 66 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----CceE-EECC
Confidence 467788888875421 5899999998 889999999999999999999999998754 6888 4777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 67 ~~~~ 70 (218)
T cd03266 67 FDVV 70 (218)
T ss_pred EEcc
Confidence 7765
No 73
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.67 E-value=2.4e-08 Score=95.33 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=59.7
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+.+.+.+++++++++ .+|++++|+||||||||||++.|++.++ . .|++ .+.|.
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I----------~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~----~G~I-~i~g~ 65 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSI----------SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T----EGDI-QIDGV 65 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhhhcC-C----CcEE-EECCE
Confidence 57899999999866566999999998 9999999999999999999999999986 3 6888 48888
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++.+
T Consensus 66 ~i~~ 69 (275)
T cd03289 66 SWNS 69 (275)
T ss_pred Ehhh
Confidence 8754
No 74
>PLN03232 ABC transporter C family member; Provisional
Probab=98.67 E-value=2.5e-08 Score=114.38 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=65.2
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|.++.+++.+|+|+|+++.+.+|+++++++ ++|+.++|+|+||||||||+..|.+.+.|. .|++ .
T Consensus 1230 p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I----------~~GekvaIVG~SGSGKSTL~~lL~rl~~p~----~G~I-~ 1294 (1495)
T PLN03232 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFV----------SPSEKVGVVGRTGAGKSSMLNALFRIVELE----KGRI-M 1294 (1495)
T ss_pred CCCCcEEEEEEEEEECCCCCcccccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CceE-E
Confidence 455789999999999877667999999998 999999999999999999999999998854 7888 5
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.||.+-
T Consensus 1295 IdG~di~~i 1303 (1495)
T PLN03232 1295 IDDCDVAKF 1303 (1495)
T ss_pred ECCEEhhhC
Confidence 889988643
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.67 E-value=2.8e-08 Score=92.06 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=55.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~ 65 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNI----------NPGEFVAIIGPSGAGKSTLLRCINRLVEPS----SGSI-LLEGTD 65 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ccEE-EECCEE
Confidence 4677888888633 34899999998 899999999999999999999999998754 6888 477777
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (243)
T TIGR02315 66 ITK 68 (243)
T ss_pred hhh
Confidence 653
No 76
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=3.2e-08 Score=91.24 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=56.3
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g 66 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSV----------PKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSV-LVDG 66 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECC
Confidence 46788888887531 24899999998 899999999999999999999999998854 7888 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 67 ~~~~~ 71 (233)
T cd03258 67 TDLTL 71 (233)
T ss_pred EEccc
Confidence 77754
No 77
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.67 E-value=3.1e-08 Score=87.56 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=55.4
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+......++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~-~~g~~~ 66 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSI----------EPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVR-LDGADI 66 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCeEE-ECCEEc
Confidence 567788888754444899999998 889999999999999999999999998754 68884 777776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 67 ~~ 68 (173)
T cd03246 67 SQ 68 (173)
T ss_pred cc
Confidence 53
No 78
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.67 E-value=2.6e-08 Score=91.53 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=57.1
Q ss_pred ceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC---CCceecCCceE
Q 019312 21 HYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF---PSEIINSDKMQ 95 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~---~~eIIs~Ds~q 95 (343)
-+++.+|+|.|+... ..+++++++++ .+|++++|+||||||||||++.|++.++ +. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~----~G~i- 67 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHV----------ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT----SGQI- 67 (226)
T ss_pred cceeecceeeeecCccccccccCceEEE----------cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC----ceEE-
Confidence 457899999998762 55899999998 8999999999999999999999999876 33 6777
Q ss_pred EEeccccc
Q 019312 96 VYKGLDIT 103 (343)
Q Consensus 96 vy~gl~I~ 103 (343)
.+.|.++.
T Consensus 68 ~~~g~~~~ 75 (226)
T cd03234 68 LFNGQPRK 75 (226)
T ss_pred EECCEECC
Confidence 46776663
No 79
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.66 E-value=2.8e-08 Score=106.01 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=61.2
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+.. +.+++++++++ ++|+.++|+||||||||||++.|++.+.|. .|++ .+.
T Consensus 471 ~~~I~~~~vsf~y~~~-~~iL~~isl~i----------~~G~~vaIvG~SGsGKSTLlklL~gl~~p~----~G~I-~id 534 (708)
T TIGR01193 471 NGDIVINDVSYSYGYG-SNILSDISLTI----------KMNSKTTIVGMSGSGKSTLAKLLVGFFQAR----SGEI-LLN 534 (708)
T ss_pred CCcEEEEEEEEEcCCC-CcceeceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhccCCCC----CcEE-EEC
Confidence 4679999999999854 45899999998 999999999999999999999999999865 6888 488
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.|+..
T Consensus 535 g~~i~~ 540 (708)
T TIGR01193 535 GFSLKD 540 (708)
T ss_pred CEEHHH
Confidence 888753
No 80
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.66 E-value=3.5e-08 Score=89.54 Aligned_cols=64 Identities=25% Similarity=0.253 Sum_probs=53.7
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++.+++. .|.+ .+.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~~s~~i----------~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 64 (213)
T cd03262 2 EIKNLHKSFGD--FHVLKGIDLTV----------KKGEVVVIIGPSGSGKSTLLRCINLLEEPD----SGTI-IIDGLKL 64 (213)
T ss_pred EEEEEEEEECC--eEeecCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEEC
Confidence 56788888864 23899999998 899999999999999999999999998754 6888 4777776
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (213)
T cd03262 65 T 65 (213)
T ss_pred C
Confidence 4
No 81
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.66 E-value=3.2e-08 Score=93.00 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=59.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.+|+..|. ...+++++++++ .+|.+++++|||||||||+++++.+...|. .|++ .+.|.+
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I----------~~gef~vliGpSGsGKTTtLkMINrLiept----~G~I-~i~g~~ 64 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTI----------EEGEFLVLIGPSGSGKTTTLKMINRLIEPT----SGEI-LIDGED 64 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEe----------cCCeEEEEECCCCCcHHHHHHHHhcccCCC----CceE-EECCee
Confidence 57899999998 445789999998 899999999999999999999999999876 7888 578888
Q ss_pred ccCCC
Q 019312 102 ITTNK 106 (343)
Q Consensus 102 I~T~k 106 (343)
|.+..
T Consensus 65 i~~~d 69 (309)
T COG1125 65 ISDLD 69 (309)
T ss_pred cccCC
Confidence 86543
No 82
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.7e-08 Score=95.22 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=57.4
Q ss_pred eeecccCCcCCcccc---cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRRR---SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.+++|.|+...+ .+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i----------~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~ 66 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEV----------KKGSYTALIGHTGSGKSTLLQHLNGLLQPT----EGKV-TVG 66 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEE----------cCCCEEEEECCCCChHHHHHHHHhcCCCCC----CcEE-EEC
Confidence 578899999975432 4899999998 899999999999999999999999998754 7888 478
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 67 g~~i~ 71 (288)
T PRK13643 67 DIVVS 71 (288)
T ss_pred CEECc
Confidence 88874
No 83
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.8e-08 Score=95.03 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=57.5
Q ss_pred eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|+.+. ..+|+++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~----~G~i-~~~ 67 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEF----------EQGKYYAIVGQTGSGKSTLIQNINALLKPT----TGTV-TVD 67 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EEC
Confidence 57788999987432 35999999998 899999999999999999999999998754 7888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 68 g~~i~~ 73 (286)
T PRK13646 68 DITITH 73 (286)
T ss_pred CEECcc
Confidence 888753
No 84
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.66 E-value=2.4e-08 Score=92.11 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=53.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~~~ 64 (236)
T cd03219 2 EVRGLTKRFGG--LVALDDVSFSV----------RPGEIHGLIGPNGAGKTTLFNLISGFLRPT----SGSVL-FDGEDI 64 (236)
T ss_pred eeeeeEEEECC--EEEecCceEEe----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CceEE-ECCEEC
Confidence 56788888863 34899999998 899999999999999999999999998754 68884 777776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (236)
T cd03219 65 TG 66 (236)
T ss_pred CC
Confidence 53
No 85
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.66 E-value=4.7e-08 Score=91.07 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=80.1
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+..|++.+|++.+- ...+++++++++ .+|++++|+||||||||||++.+.+.+.|. .|++ ...
T Consensus 6 ~~~I~vr~v~~~fG--~~~Ild~v~l~V----------~~Gei~~iiGgSGsGKStlLr~I~Gll~P~----~GeI-~i~ 68 (263)
T COG1127 6 EPLIEVRGVTKSFG--DRVILDGVDLDV----------PRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEI-LID 68 (263)
T ss_pred cceEEEeeeeeecC--CEEEecCceeee----------cCCcEEEEECCCCcCHHHHHHHHhccCCCC----CCeE-EEc
Confidence 56789999999985 455899999998 999999999999999999999999999876 7888 477
Q ss_pred cccccCCCCCcccc------ccc---CccccccccCCC-cccChhhhhhhhhHHHHHHH
Q 019312 99 GLDITTNKIPSHKR------HNV---PHHLLGEFVPDD-VEFTPDDFRLQADNAISDII 147 (343)
Q Consensus 99 gl~I~T~kp~~~e~------~~i---~h~li~~~~~~~-~~~s~~~f~~~a~~~i~~i~ 147 (343)
|.+|... +.+++ -|+ ...|++.+...| +.|...++.+.-++.++++.
T Consensus 69 G~~i~~l--s~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv 125 (263)
T COG1127 69 GEDIPQL--SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125 (263)
T ss_pred Ccchhcc--CHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH
Confidence 8887533 23332 233 235666665554 34555555555555565554
No 86
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.66 E-value=2.5e-08 Score=114.53 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|.++.+++.+|+|.|+.+.+.+|+++++++ ++|+.++|+|+||||||||+..|.+.+.+. .|++ .
T Consensus 1280 p~~g~I~f~nVsf~Y~~~~~~vL~~is~~I----------~~GekiaIVGrTGsGKSTL~~lL~rl~~~~----~G~I-~ 1344 (1522)
T TIGR00957 1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTI----------HGGEKVGIVGRTGAGKSSLTLGLFRINESA----EGEI-I 1344 (1522)
T ss_pred CCCCcEEEEEEEEEeCCCCcccccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCccCC----CCeE-E
Confidence 456789999999999987667999999998 999999999999999999999999998854 6888 5
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.||.+-
T Consensus 1345 IdG~dI~~i 1353 (1522)
T TIGR00957 1345 IDGLNIAKI 1353 (1522)
T ss_pred ECCEEcccc
Confidence 889888643
No 87
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.6e-08 Score=92.06 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=54.0
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|.. ...++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~~ 64 (235)
T cd03261 2 ELRGLTKSFGG--RTVLKGVDLDV----------RRGEILAIIGPSGSGKSTLLRLIVGLLRPD----SGEV-LIDGEDI 64 (235)
T ss_pred eEEEEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEc
Confidence 46778888863 24899999998 899999999999999999999999998754 6888 4778776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (235)
T cd03261 65 SG 66 (235)
T ss_pred cc
Confidence 53
No 88
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=3e-08 Score=91.62 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=54.3
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~-~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~~ 65 (241)
T cd03256 2 EVENLSKTYPNG-KKALKDVSLSI----------NPGEFVALIGPSGAGKSTLLRCLNGLVEPT----SGSV-LIDGTDI 65 (241)
T ss_pred EEeeEEEecCCc-cEEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----CceE-EECCEec
Confidence 567788888642 34899999998 899999999999999999999999988754 6888 4778776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 66 ~~ 67 (241)
T cd03256 66 NK 67 (241)
T ss_pred cc
Confidence 53
No 89
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.65 E-value=1.9e-07 Score=83.36 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|++++|+|||||||||+++.|++.+. ...|+.|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-AKFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-CEEECCccc
Confidence 378999999999999999999999988 445555544
No 90
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.65 E-value=5.2e-08 Score=90.40 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=47.9
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN 105 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~ 105 (343)
-.+|+++++++ ++|++++|+||||||||||+..++....|. .+.+ .+.|.++...
T Consensus 18 ~~~L~~v~l~i----------~~Ge~vaI~GpSGSGKSTLLniig~ld~pt----~G~v-~i~g~d~~~l 72 (226)
T COG1136 18 VEALKDVNLEI----------EAGEFVAIVGPSGSGKSTLLNLLGGLDKPT----SGEV-LINGKDLTKL 72 (226)
T ss_pred eEecccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CceE-EECCEEcCcC
Confidence 34899999998 999999999999999999999999988754 7887 5888888654
No 91
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.65 E-value=4.1e-08 Score=90.22 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=57.6
Q ss_pred ceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
-+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~----~G~i~-~~ 70 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVV----------KRGETIALIGESGSGKSTLLAILAGLDDGS----SGEVS-LV 70 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CeeEE-EC
Confidence 478899999987532 24899999998 899999999999999999999999998754 68884 77
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 71 g~~~~~ 76 (228)
T PRK10584 71 GQPLHQ 76 (228)
T ss_pred CEEccc
Confidence 777654
No 92
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.65 E-value=3.3e-08 Score=89.78 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=53.7
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|... ..++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~--~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~v-~~~g~~~ 64 (213)
T cd03301 2 ELENVTKRFGNV--TALDDLNLDI----------ADGEFVVLLGPSGCGKTTTLRMIAGLEEPT----SGRI-YIGGRDV 64 (213)
T ss_pred EEEeeEEEECCe--eeeeceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEC
Confidence 567788887642 4899999998 899999999999999999999999998754 6888 4778776
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (213)
T cd03301 65 T 65 (213)
T ss_pred C
Confidence 4
No 93
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=3.4e-08 Score=91.70 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=54.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~-~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 65 (242)
T cd03295 2 EFENVTKRYGGG-KKAVNNLNLEI----------AKGEFLVLIGPSGSGKTTTMKMINRLIEPT----SGEI-FIDGEDI 65 (242)
T ss_pred EEEEEEEEeCCc-ceEeeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCeEc
Confidence 567888888753 34899999998 899999999999999999999999998754 6888 4778776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 66 ~~ 67 (242)
T cd03295 66 RE 67 (242)
T ss_pred Cc
Confidence 53
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.65 E-value=3.2e-08 Score=90.31 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=54.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.. .+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~ 63 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTV----------PEGEIVALLGRNGAGKTTLLKTIMGLLPPR----SGSI-RFDGRD 63 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEE----------cCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEE
Confidence 3567888888642 3899999998 899999999999999999999999998754 6888 477766
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 64 ~~~ 66 (222)
T cd03224 64 ITG 66 (222)
T ss_pred cCC
Confidence 643
No 95
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.65 E-value=3.5e-08 Score=89.68 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=54.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i----------~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~~ 65 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHI----------RKGEFLFLTGPSGAGKTTLLKLLYGALTPS----RGQV-RIAGED 65 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEE
Confidence 4577888888533 34899999998 899999999999999999999999998744 6888 467777
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (214)
T TIGR02673 66 VNR 68 (214)
T ss_pred ccc
Confidence 643
No 96
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.64 E-value=3.1e-08 Score=89.84 Aligned_cols=65 Identities=29% Similarity=0.382 Sum_probs=52.0
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++.
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i----------~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~~ 66 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTI----------KKGEFVLIVGPNGSGKSTLLRLLNGLLGPT----SGEV-LVDGKDLT 66 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCEEcc
Confidence 45667777542234899999998 889999999999999999999999988754 6888 47777664
No 97
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.64 E-value=3.4e-08 Score=86.72 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=54.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.. .++.++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v-~~~g~~ 63 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSV----------RRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEI-LVDGKE 63 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECCEE
Confidence 3567888888743 3899999998 899999999999999999999999998754 6877 467777
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 64 ~~~ 66 (163)
T cd03216 64 VSF 66 (163)
T ss_pred CCc
Confidence 654
No 98
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=4.1e-08 Score=86.60 Aligned_cols=66 Identities=26% Similarity=0.389 Sum_probs=54.5
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+...+..++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i----------~~G~~~~l~G~nGsGKstLl~~i~G~~~~~----~G~i-~~~g~~~ 66 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTI----------KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEI-LIDGVDL 66 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CCEE-EECCEEh
Confidence 466777777654335899999998 899999999999999999999999998754 6888 4777776
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 67 ~ 67 (171)
T cd03228 67 R 67 (171)
T ss_pred h
Confidence 4
No 99
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=4e-08 Score=93.08 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=58.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+.+...+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g~ 71 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEI----------NEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEI-KIDGI 71 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCE
Confidence 47889999999754445899999998 899999999999999999999999998754 6888 47787
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 72 ~i~~ 75 (271)
T PRK13632 72 TISK 75 (271)
T ss_pred ecCc
Confidence 7753
No 100
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.64 E-value=3.7e-08 Score=87.57 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=54.1
Q ss_pred cCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCC
Q 019312 30 LHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIP 108 (343)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~ 108 (343)
+|.......|+++++++ .+|..++|+||||||||||.+.+|...+|. .|.+ .++|.++.+.+|.
T Consensus 10 ~y~a~~a~il~~isl~v----------~~Ge~iaitGPSG~GKStllk~va~Lisp~----~G~l-~f~Ge~vs~~~pe 73 (223)
T COG4619 10 GYLAGDAKILNNISLSV----------RAGEFIAITGPSGCGKSTLLKIVASLISPT----SGTL-LFEGEDVSTLKPE 73 (223)
T ss_pred HhhcCCCeeecceeeee----------cCCceEEEeCCCCccHHHHHHHHHhccCCC----CceE-EEcCccccccChH
Confidence 34444566899999998 899999999999999999999999998865 5666 5899999888773
No 101
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.7e-08 Score=92.63 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=66.4
Q ss_pred ecccCCCCCCCCCCCc-cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 4 FLFSPPTPACYHHQQQ-QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
-+|.||--.-.+.+-+ ..+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 7 TLMALPLLDVLNLSDEQTALEVRNLNLFYGD--KQALFDISMRI----------PKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eeeecccccccccCCCCcEEEEEEEEEEECC--eeEeeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4677777555555433 46899999999964 24899999998 89999999999999999999999998
Q ss_pred cCCC-ceecCCceEEEeccccc
Q 019312 83 FFPS-EIINSDKMQVYKGLDIT 103 (343)
Q Consensus 83 ~~~~-eIIs~Ds~qvy~gl~I~ 103 (343)
.++. .....|.+ .+.|.++.
T Consensus 75 ~~~~~~~~~~G~i-~i~g~~i~ 95 (272)
T PRK14236 75 NDLVDNCRIEGEI-RLDGQNIY 95 (272)
T ss_pred CCCccCCCCceEE-EECCEECc
Confidence 7521 01126777 47777764
No 102
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.64 E-value=4.2e-08 Score=101.73 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=60.1
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.++++.+|+|.|+... .+++++++++ ++|+.++|+||||||||||++.|++.++|. .|++. +.|
T Consensus 321 ~~i~~~~v~f~y~~~~-~~l~~i~~~i----------~~G~~~aivG~sGsGKSTL~~ll~g~~~~~----~G~i~-~~g 384 (547)
T PRK10522 321 QTLELRNVTFAYQDNG-FSVGPINLTI----------KRGELLFLIGGNGSGKSTLAMLLTGLYQPQ----SGEIL-LDG 384 (547)
T ss_pred ceEEEEEEEEEeCCCC-eEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE-ECC
Confidence 5799999999998543 4899999998 899999999999999999999999998865 68884 778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++.+
T Consensus 385 ~~~~~ 389 (547)
T PRK10522 385 KPVTA 389 (547)
T ss_pred EECCC
Confidence 87754
No 103
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.63 E-value=3.1e-08 Score=89.63 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=51.9
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.++.
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~~~~ 65 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDL----------YAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSIL-LNGKPIK 65 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEEE-ECCEEhh
Confidence 45677777642 34899999998 899999999999999999999999998754 68773 6777663
No 104
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=3.4e-08 Score=90.32 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=53.5
Q ss_pred eecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 23 SSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 23 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++. +.|.
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~ 66 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSV----------EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVL-VDGE 66 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCE
Confidence 4667778776421 34899999998 899999999999999999999999988754 68884 7777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 67 ~~~ 69 (220)
T cd03293 67 PVT 69 (220)
T ss_pred ECc
Confidence 664
No 105
>PRK10908 cell division protein FtsE; Provisional
Probab=98.63 E-value=3.7e-08 Score=90.21 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=54.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.. ...++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~ 65 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHM----------RPGEMAFLTGHSGAGKSTLLKLICGIERPS----AGKI-WFSGHD 65 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence 4678888888533 34899999998 899999999999999999999999998754 6888 467776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 i~ 67 (222)
T PRK10908 66 IT 67 (222)
T ss_pred cc
Confidence 64
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=3.4e-08 Score=93.85 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=56.4
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+... .+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~~~-~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 65 (274)
T PRK13644 2 IRLENVSYSYPDGT-PALENINLVI----------KKGEYIGIIGKNGSGKSTLALHLNGLLRPQ----KGKV-LVSGID 65 (274)
T ss_pred EEEEEEEEEcCCCC-ceeeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCEE
Confidence 46778888886433 3899999998 899999999999999999999999998754 7888 478887
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (274)
T PRK13644 66 TGD 68 (274)
T ss_pred CCc
Confidence 754
No 107
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.63 E-value=5.2e-08 Score=100.92 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=61.5
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+.+...+++++++++ ++|+.++|+||||||||||++.|++.++|. .|++. +.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~i~-~~ 378 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRL----------QAGEALAIIGPSGSGKSTLARLIVGIWPPT----SGSVR-LD 378 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-EC
Confidence 4579999999999876556899999998 899999999999999999999999998865 68884 77
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++.+
T Consensus 379 g~~i~~ 384 (544)
T TIGR01842 379 GADLKQ 384 (544)
T ss_pred CEehhh
Confidence 777754
No 108
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.63 E-value=4.8e-08 Score=89.15 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=56.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++++.++++.|+......+.++++++ .+|++++|+||||||||||++.|++..++. .|++ .|.|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i----------~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~ 66 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTI----------RAGEKVAIIGRVGSGKSTLLKLLAGLYKPT----SGSV-LLDGT 66 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCeE-EECCE
Confidence 46788888888653334899999998 899999999999999999999999988744 6888 47776
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 67 ~~~ 69 (220)
T cd03245 67 DIR 69 (220)
T ss_pred EhH
Confidence 654
No 109
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.63 E-value=4.7e-08 Score=102.12 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=61.2
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..++++.+|+|.|+.. +.+++++++++ ++|+.++|+|+||||||||++.|++.++|. .|++ .+.
T Consensus 338 ~~~i~~~~v~f~y~~~-~~il~~i~l~i----------~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~----~G~I-~id 401 (592)
T PRK10790 338 SGRIDIDNVSFAYRDD-NLVLQNINLSV----------PSRGFVALVGHTGSGKSTLASLLMGYYPLT----EGEI-RLD 401 (592)
T ss_pred CCeEEEEEEEEEeCCC-CceeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CceE-EEC
Confidence 4679999999999854 34899999998 999999999999999999999999999865 6888 588
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 402 g~~i~~ 407 (592)
T PRK10790 402 GRPLSS 407 (592)
T ss_pred CEEhhh
Confidence 888753
No 110
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=4.4e-08 Score=93.34 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=58.3
Q ss_pred ceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
-+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g 68 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHV----------KQGEWLSIIGHNGSGKSTTVRLIDGLLEAE----SGQI-IIDG 68 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECC
Confidence 47888999999743 234899999998 899999999999999999999999998754 7888 5788
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 69 ~~i~~ 73 (279)
T PRK13650 69 DLLTE 73 (279)
T ss_pred EECCc
Confidence 88753
No 111
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=4.4e-08 Score=93.73 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=57.9
Q ss_pred eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i----------~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~----~G~i-~~~ 67 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEI----------EDGEFVGLIGHTGSGKSTLIQHLNGLLKPT----SGKI-IID 67 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ccEE-EEC
Confidence 67889999997532 24899999998 899999999999999999999999998754 7888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 68 g~~~~~ 73 (287)
T PRK13637 68 GVDITD 73 (287)
T ss_pred CEECCC
Confidence 888764
No 112
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=4e-08 Score=93.33 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=57.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|.+. +.|.
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~ 67 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSI----------PEGSKTALLGPNGAGKSTLLLHLNGIYLPQ----RGRVK-VMGR 67 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ceEEE-ECCE
Confidence 47889999998743 33899999998 899999999999999999999999998754 68884 7888
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 68 ~~~ 70 (274)
T PRK13647 68 EVN 70 (274)
T ss_pred ECC
Confidence 774
No 113
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.62 E-value=4.2e-08 Score=90.08 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=52.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc-----CCCceecCCceEEE
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF-----FPSEIINSDKMQVY 97 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~-----~~~eIIs~Ds~qvy 97 (343)
++.++++.|+.. .+++++++++ .+|++++|+||||||||||++.|++.. ++. .|++ .+
T Consensus 2 ~~~~l~~~~~~~--~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~----~G~i-~~ 64 (227)
T cd03260 2 ELRDLNVYYGDK--HALKDISLDI----------PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEV-LL 64 (227)
T ss_pred EEEEEEEEcCCc--eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC----CeEE-EE
Confidence 567888888643 4899999998 899999999999999999999999998 543 6777 46
Q ss_pred eccccc
Q 019312 98 KGLDIT 103 (343)
Q Consensus 98 ~gl~I~ 103 (343)
.|.++.
T Consensus 65 ~g~~~~ 70 (227)
T cd03260 65 DGKDIY 70 (227)
T ss_pred CCEEhh
Confidence 776654
No 114
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=4.1e-08 Score=96.41 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=57.5
Q ss_pred eeecccCCcCCc--ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPK--RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+. +...+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i----------~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~----~G~I-~~~g 66 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHI----------PAGEIFGVIGASGAGKSTLIRCINLLERPT----SGRV-LVDG 66 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECC
Confidence 467888888872 2234899999998 899999999999999999999999998754 7888 4888
Q ss_pred ccccCC
Q 019312 100 LDITTN 105 (343)
Q Consensus 100 l~I~T~ 105 (343)
.++...
T Consensus 67 ~~i~~~ 72 (343)
T PRK11153 67 QDLTAL 72 (343)
T ss_pred EECCcC
Confidence 887643
No 115
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=4.4e-08 Score=92.64 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=57.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++.+++. .|++ .+.|.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i----------~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~ 71 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNI----------PKGQWTSIVGHNGSGKSTIAKLMIGIEKVK----SGEI-FYNNQ 71 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCE
Confidence 47889999999764344899999998 899999999999999999999999998754 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 72 ~~~ 74 (269)
T PRK13648 72 AIT 74 (269)
T ss_pred ECC
Confidence 774
No 116
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.62 E-value=2.5e-07 Score=80.52 Aligned_cols=116 Identities=17% Similarity=0.307 Sum_probs=66.2
Q ss_pred EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhH
Q 019312 62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADN 141 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~ 141 (343)
|+|+||+||||||+++.|++.++ ..+|+.|.+..+..... ...+.++. ++ +...|.....+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~~~~~~~~~~--------~~~~~~~~-------~~---~~~~~~~~~~~ 61 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDDLHPAANIEK--------MSAGIPLN-------DD---DRWPWLQNLND 61 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeCccccChHHHHH--------HHcCCCCC-------hh---hHHHHHHHHHH
Confidence 47899999999999999999998 88888888731111110 01111110 01 11234333444
Q ss_pred HHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 142 AISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 142 ~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
.+......|+..|+.-| .+ -+.... .+. ....++.++|++++.+++.+|+..|..
T Consensus 62 ~~~~~l~~~~~~Vi~~t-~~-~~~~r~--------~~~----------~~~~~~~~i~l~~~~e~~~~R~~~R~~ 116 (163)
T TIGR01313 62 ASTAAAAKNKVGIITCS-AL-KRHYRD--------ILR----------EAEPNLHFIYLSGDKDVILERMKARKG 116 (163)
T ss_pred HHHHHHhcCCCEEEEec-cc-HHHHHH--------HHH----------hcCCCEEEEEEeCCHHHHHHHHHhccC
Confidence 44445556665444333 22 111110 010 012346678999999999999999963
No 117
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=5e-08 Score=89.58 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=55.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++++.++++.|+... ..++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.
T Consensus 2 ~l~~~~l~~~~~~~~-~~l~~isl~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~ 65 (229)
T cd03254 2 EIEFENVNFSYDEKK-PVLKDINFSI----------KPGETVAIVGPTGAGKTTLINLLMRFYDPQ----KGQI-LIDGI 65 (229)
T ss_pred eEEEEEEEEecCCCC-ccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-EECCE
Confidence 577889999887432 3899999998 899999999999999999999999998754 6777 36666
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 66 ~~~ 68 (229)
T cd03254 66 DIR 68 (229)
T ss_pred eHH
Confidence 554
No 118
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.62 E-value=4.2e-08 Score=90.25 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=53.7
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~ 64 (232)
T cd03218 2 RAENLSKRYGK--RKVVNGVSLSV----------KQGEIVGLLGPNGAGKTTTFYMIVGLVKPD----SGKI-LLDGQDI 64 (232)
T ss_pred eEEEEEEEeCC--EEeeccceeEe----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEec
Confidence 56778888863 34899999998 889999999999999999999999998754 6888 4777766
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (232)
T cd03218 65 TK 66 (232)
T ss_pred cc
Confidence 43
No 119
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=3.8e-08 Score=89.30 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=52.6
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~v~~~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~~ 64 (210)
T cd03269 2 EVENVTKRFGR--VTALDDISFSV----------EKGEIFGLLGPNGAGKTTTIRMILGIILPD----SGEVL-FDGKPL 64 (210)
T ss_pred EEEEEEEEECC--EEEEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCCch
Confidence 46677887763 34899999998 899999999999999999999999988754 68884 667665
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (210)
T cd03269 65 D 65 (210)
T ss_pred h
Confidence 3
No 120
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.61 E-value=4.6e-08 Score=89.98 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=54.5
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. ..++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 64 (230)
T TIGR03410 2 EVSNLNVYYGQS--HILRGVSLEV----------PKGEVTCVLGRNGVGKTTLLKTLMGLLPVK----SGSI-RLDGEDI 64 (230)
T ss_pred EEEeEEEEeCCe--EEecceeeEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCEEC
Confidence 567888888642 4899999998 899999999999999999999999998754 6888 4777776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (230)
T TIGR03410 65 TK 66 (230)
T ss_pred CC
Confidence 54
No 121
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.61 E-value=3.9e-08 Score=89.45 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=51.2
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
+.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.++
T Consensus 2 ~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~~~ 63 (213)
T cd03235 2 VEDLTVSYGG--HPVLEDVSFEV----------KPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIR-VFGKPL 63 (213)
T ss_pred cccceeEECC--EEeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CCEEE-ECCccH
Confidence 4577777764 23899999998 899999999999999999999999998754 68883 667655
No 122
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=6.1e-08 Score=92.50 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=58.2
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++.+.|.. -..|++ .+.|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i----------~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~-g~~G~i-~i~g 71 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSI----------PRGSWTALIGHNGSGKSTISKLINGLLLPDD-NPNSKI-TVDG 71 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcccCCCC-CCCcEE-EECC
Confidence 457889999999754334899999998 8999999999999999999999999987431 001677 4788
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 72 ~~~~~ 76 (282)
T PRK13640 72 ITLTA 76 (282)
T ss_pred EECCc
Confidence 87753
No 123
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.61 E-value=6.6e-08 Score=100.51 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=60.3
Q ss_pred ccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 19 QQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
...+++.+|+|.||... ..+++++++++ ++|+.++|+|+||||||||++.|++.++|. .|.+ .+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i----------~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~----~G~I-~i 399 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTV----------RPGETVALVGPSGAGKSTLFQLLLRFYDPQ----SGRI-LL 399 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEe----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCEE-EE
Confidence 35799999999998643 45899999998 999999999999999999999999999864 6777 47
Q ss_pred eccccc
Q 019312 98 KGLDIT 103 (343)
Q Consensus 98 ~gl~I~ 103 (343)
.|.++.
T Consensus 400 ~g~~i~ 405 (576)
T TIGR02204 400 DGVDLR 405 (576)
T ss_pred CCEEHH
Confidence 787775
No 124
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=4.7e-08 Score=92.89 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|+... ..+++++++++ .+|.+++|+||||||||||++.|++.++|. .|++. +.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~----~G~i~-~~ 67 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTI----------EDGSYTAFIGHTGSGKSTIMQLLNGLHVPT----QGSVR-VD 67 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-EC
Confidence 57888999987532 24899999998 899999999999999999999999998754 68884 77
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 68 g~~i~~ 73 (280)
T PRK13649 68 DTLITS 73 (280)
T ss_pred CEEccc
Confidence 877754
No 125
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.61 E-value=7e-08 Score=100.10 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=60.7
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..++++.+|+|.|+......++++++++ ++|+.++|+|+||||||||++.|++..+|. .|++ .+.
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i----------~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~----~G~I-~i~ 392 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVI----------EPGETVALVGRSGSGKSTLVNLIPRFYEPD----SGQI-LLD 392 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEe----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCeE-EEC
Confidence 4679999999999865445899999998 999999999999999999999999999855 6888 477
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 393 g~~i~ 397 (571)
T TIGR02203 393 GHDLA 397 (571)
T ss_pred CEeHH
Confidence 77764
No 126
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.61 E-value=4.6e-08 Score=88.18 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=57.3
Q ss_pred ceeecccCCcCCcc----cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCce
Q 019312 21 HYSSFYSPFLHPKR----RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKM 94 (343)
Q Consensus 21 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~ 94 (343)
.+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++.+ ++. .|++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i----------~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~----~G~i 68 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA----------KPGELTAIMGPSGAGKSTLLNALAGRRTGLGV----SGEV 68 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC----ceEE
Confidence 36788999999763 234899999998 899999999999999999999999998 644 6888
Q ss_pred EEEeccccc
Q 019312 95 QVYKGLDIT 103 (343)
Q Consensus 95 qvy~gl~I~ 103 (343)
.|.|.++.
T Consensus 69 -~~~g~~~~ 76 (194)
T cd03213 69 -LINGRPLD 76 (194)
T ss_pred -EECCEeCc
Confidence 47887775
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=5e-08 Score=90.71 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=55.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 4 l~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 66 (241)
T PRK14250 4 IEFKEVSYSSFG--KEILKDISVKF----------EGGAIYTIVGPSGAGKSTLIKLINRLIDPT----EGSI-LIDGVD 66 (241)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence 578888888863 24899999998 889999999999999999999999998754 6888 477777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 67 i~ 68 (241)
T PRK14250 67 IK 68 (241)
T ss_pred hh
Confidence 64
No 128
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.60 E-value=4.9e-08 Score=90.35 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=54.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~ 64 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTV----------RPGEFVALLGPNGAGKSTLFSLLTRLYVAQ----EGQI-SVAGHD 64 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ceEE-EECCEE
Confidence 457788888863 34899999998 899999999999999999999999998754 6888 477777
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 65 i~~ 67 (236)
T TIGR03864 65 LRR 67 (236)
T ss_pred ccc
Confidence 643
No 129
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.60 E-value=7.3e-08 Score=88.07 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=56.2
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+.. ..++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~ 73 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHV----------DAGEALLVQGDNGAGKTTLLRVLAGLLHVE----SGQI-QIDGK 73 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEE----------CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----CeeE-EECCE
Confidence 47889999988642 3899999998 899999999999999999999999998754 6888 47777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 74 ~i~ 76 (214)
T PRK13543 74 TAT 76 (214)
T ss_pred Ecc
Confidence 764
No 130
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=5.7e-08 Score=94.83 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+... ..+++++++++ .+|++++|+|+||||||||++.|++.+++...+++|++ .|.|
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i-~~~G 72 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSV----------KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL-EFNG 72 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE-EECC
Confidence 56778888776532 34899999998 99999999999999999999999998863222347888 4889
Q ss_pred ccccCC
Q 019312 100 LDITTN 105 (343)
Q Consensus 100 l~I~T~ 105 (343)
.++...
T Consensus 73 ~~i~~~ 78 (326)
T PRK11022 73 QDLQRI 78 (326)
T ss_pred EECCcC
Confidence 888543
No 131
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=6e-08 Score=89.15 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=52.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.+++-.|- .-.+|+++++++ .+|++++|+||||||||||+++|+.+-. ++.|++ .+.|.+
T Consensus 3 i~i~~l~K~fg--~~~VLkgi~l~v----------~~Gevv~iiGpSGSGKSTlLRclN~LE~----~~~G~I-~i~g~~ 65 (240)
T COG1126 3 IEIKNLSKSFG--DKEVLKGISLSV----------EKGEVVVIIGPSGSGKSTLLRCLNGLEE----PDSGSI-TVDGED 65 (240)
T ss_pred EEEEeeeEEeC--CeEEecCcceeE----------cCCCEEEEECCCCCCHHHHHHHHHCCcC----CCCceE-EECCEe
Confidence 34445544444 345899999998 9999999999999999999999997644 558888 478877
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 66 ~~~~ 69 (240)
T COG1126 66 VGDK 69 (240)
T ss_pred ccch
Confidence 7543
No 132
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=5e-08 Score=86.63 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+++. .|.+. +.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~i~~~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~~ 64 (178)
T cd03229 2 ELKNVSKRYGQ--KTVLNDVSLNI----------EAGEIVALLGPSGSGKSTLLRCIAGLEEPD----SGSIL-IDGEDL 64 (178)
T ss_pred EEEEEEEEECC--eEEEeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEEc
Confidence 46677787764 23899999998 899999999999999999999999988754 68884 777776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (178)
T cd03229 65 TD 66 (178)
T ss_pred cc
Confidence 54
No 133
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.60 E-value=4.7e-08 Score=86.93 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=53.0
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++.
T Consensus 2 ~~~l~~~~~~--~~~l~~~~~~i----------~~G~~~~l~G~nGsGKStLl~~i~G~~~~~----~G~v-~~~g~~~~ 64 (180)
T cd03214 2 VENLSVGYGG--RTVLDDLSLSI----------EAGEIVGILGPNGAGKSTLLKTLAGLLKPS----SGEI-LLDGKDLA 64 (180)
T ss_pred eeEEEEEECC--eeeEeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEECC
Confidence 5677777764 34899999998 899999999999999999999999998754 6888 47777765
Q ss_pred C
Q 019312 104 T 104 (343)
Q Consensus 104 T 104 (343)
.
T Consensus 65 ~ 65 (180)
T cd03214 65 S 65 (180)
T ss_pred c
Confidence 3
No 134
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.60 E-value=5e-08 Score=90.43 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~ 65 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYV----------DPGELRVIIGPNGAGKTTMMDVITGKTRPD----EGSV-LFGGTD 65 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCeE-EECCee
Confidence 567888988874 34899999998 899999999999999999999999998754 7888 477777
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+.+
T Consensus 66 ~~~ 68 (242)
T TIGR03411 66 LTG 68 (242)
T ss_pred cCC
Confidence 654
No 135
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=5.1e-08 Score=91.71 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=54.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 64 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTL----------ESGELLVVLGPSGCGKTTLLNLIAGFVPYQ----HGSI-TLDGKP 64 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence 467788888864 34899999998 899999999999999999999999998754 6888 477877
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 65 ~~ 66 (255)
T PRK11248 65 VE 66 (255)
T ss_pred CC
Confidence 64
No 136
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=5.5e-08 Score=91.76 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=58.1
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+..+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.
T Consensus 9 ~~~l~i~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~ 71 (265)
T PRK10575 9 DTTFALRNVSFRVPG--RTLLHPLSLTF----------PAGKVTGLIGHNGSGKSTLLKMLGRHQPPS----EGEI-LLD 71 (265)
T ss_pred CceEEEeeEEEEECC--EEEEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CCEE-EEC
Confidence 346889999999974 34899999998 899999999999999999999999988743 7888 477
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 72 g~~~~~ 77 (265)
T PRK10575 72 AQPLES 77 (265)
T ss_pred CEehhh
Confidence 877753
No 137
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=5.8e-08 Score=90.02 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=55.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~ 65 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTV----------NSGEIVGLLGPNGAGKTTTFYMVVGIVPRD----AGNI-IIDDE 65 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCE
Confidence 3678899998864 34899999998 899999999999999999999999998754 6887 46777
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 66 ~~~~ 69 (241)
T PRK10895 66 DISL 69 (241)
T ss_pred ECCC
Confidence 7643
No 138
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.60 E-value=5.7e-08 Score=93.95 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=58.9
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++. +.
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i----------~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~----~G~v~-i~ 67 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHV----------QRGECFGLLGPNGAGKTTTLRMLLGLTHPD----AGSIS-LC 67 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEE----------eCCcEEEEECCCCCCHHHHHHHHhcCCCCC----ceEEE-EC
Confidence 356889999999974 34899999998 899999999999999999999999998754 68884 77
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 68 G~~~~~ 73 (306)
T PRK13537 68 GEPVPS 73 (306)
T ss_pred CEeccc
Confidence 888754
No 139
>PRK06217 hypothetical protein; Validated
Probab=98.60 E-value=4.4e-07 Score=81.01 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=31.7
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..|+|+|++||||||+++.|++.++ .++|+.|.+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~-~~~~~~D~~ 35 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD-IPHLDTDDY 35 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC-CcEEEcCce
Confidence 3589999999999999999999998 889999988
No 140
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=5.8e-08 Score=92.35 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=56.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+...+ +++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 4 l~~~~l~~~~~~~~~-~l~~vsl~i----------~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 67 (277)
T PRK13652 4 IETRDLCYSYSGSKE-ALNNINFIA----------PRNSRIAVIGPNGAGKSTLFRHFNGILKPT----SGSV-LIRGEP 67 (277)
T ss_pred EEEEEEEEEeCCCCc-eeeEeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEE
Confidence 567899999964433 899999998 899999999999999999999999998754 7888 477887
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 68 ~~~ 70 (277)
T PRK13652 68 ITK 70 (277)
T ss_pred CCc
Confidence 753
No 141
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=5e-08 Score=89.22 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=52.6
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~~~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~~ 64 (220)
T cd03265 2 EVENLVKKYGD--FEAVRGVSFRV----------RRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRA-TVAGHDV 64 (220)
T ss_pred EEEEEEEEECC--EEeeeceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEec
Confidence 56677777753 34899999998 899999999999999999999999988754 6787 3667666
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (220)
T cd03265 65 V 65 (220)
T ss_pred C
Confidence 4
No 142
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.60 E-value=6.3e-08 Score=90.95 Aligned_cols=71 Identities=23% Similarity=0.187 Sum_probs=60.1
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
-+.+++.++++.|+.....+++++++++ .+|++++|+|+||||||||++.|++..++. .|++ .+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~i~ 81 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYI----------KPGQKVGICGRTGSGKSSLSLAFFRMVDIF----DGKI-VID 81 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcccCCC----CCeE-EEC
Confidence 3678899999999764445899999998 899999999999999999999999988754 7888 477
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 82 g~~i~~ 87 (257)
T cd03288 82 GIDISK 87 (257)
T ss_pred CEEhhh
Confidence 877653
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.6e-08 Score=92.80 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=58.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+.+. .+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|.
T Consensus 5 ~l~~~~l~~~~~~~~-~~l~~vs~~i----------~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~----~G~i~-i~g~ 68 (283)
T PRK13636 5 ILKVEELNYNYSDGT-HALKGININI----------KKGEVTAILGGNGAGKSTLFQNLNGILKPS----SGRIL-FDGK 68 (283)
T ss_pred eEEEEeEEEEeCCCC-eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ccEEE-ECCE
Confidence 478999999997433 4899999998 899999999999999999999999998754 78884 8888
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 69 ~~~ 71 (283)
T PRK13636 69 PID 71 (283)
T ss_pred ECC
Confidence 874
No 144
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=6e-08 Score=92.72 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=58.3
Q ss_pred cceeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 20 QHYSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
..+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~ 69 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTF----------KKNKVTCVIGTTGSGKSTMIQLTNGLIISE----TGQT-I 69 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-E
Confidence 5688999999997543 24899999998 899999999999999999999999998754 6888 4
Q ss_pred Eeccccc
Q 019312 97 YKGLDIT 103 (343)
Q Consensus 97 y~gl~I~ 103 (343)
+.|.++.
T Consensus 70 ~~g~~i~ 76 (289)
T PRK13645 70 VGDYAIP 76 (289)
T ss_pred ECCEEcc
Confidence 7787764
No 145
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.59 E-value=7e-08 Score=102.85 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=62.7
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..++++.+|+|.|+...+.+++++++++ ++|+.++|+|+||||||||++.|++...|. .|++ .+.
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i----------~~G~~vaivG~sGsGKSTL~~ll~g~~~p~----~G~I-~id 517 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDI----------KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ----HGQV-LVD 517 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EEC
Confidence 4679999999999876666999999998 899999999999999999999999998865 6888 488
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 518 g~~i~~ 523 (694)
T TIGR01846 518 GVDLAI 523 (694)
T ss_pred CEehhh
Confidence 888753
No 146
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.3e-08 Score=90.35 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=54.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~ 65 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDC----------PQGETLVLLGPSGAGKSSLLRVLNLLEMPR----SGTL-NIAGNH 65 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEe
Confidence 567888998864 34899999998 899999999999999999999999998754 6888 477776
Q ss_pred c
Q 019312 102 I 102 (343)
Q Consensus 102 I 102 (343)
+
T Consensus 66 ~ 66 (242)
T PRK11124 66 F 66 (242)
T ss_pred c
Confidence 5
No 147
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.5e-08 Score=93.19 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=57.6
Q ss_pred eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|+... ..+|+++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~ 67 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSI----------PSGSYVAIIGHTGSGKSTLLQHLNGLLQPT----SGTV-TIG 67 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE-EEC
Confidence 67889999997532 34899999998 899999999999999999999999998754 7888 488
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 68 g~~i~~ 73 (290)
T PRK13634 68 ERVITA 73 (290)
T ss_pred CEECcc
Confidence 888753
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.5e-08 Score=92.65 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=57.5
Q ss_pred eeecccCCcCCccc----ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 22 YSSFYSPFLHPKRR----RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 22 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.+++. .|++ .+
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~i 69 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEV----------KKGEFLVILGRNGSGKSTIAKHMNALLIPS----EGKV-YV 69 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EE
Confidence 67889999997532 34999999998 899999999999999999999999998754 7888 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++.+
T Consensus 70 ~g~~i~~ 76 (280)
T PRK13633 70 DGLDTSD 76 (280)
T ss_pred CCEeccc
Confidence 7887754
No 149
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.6e-08 Score=94.02 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=55.2
Q ss_pred eeecccCCcCCcccc---cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRRR---SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|+...+ .+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i----------~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~----~G~i~-~~ 67 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEI----------NQGEFIAIIGQTGSGKTTFIEHLNALLLPD----TGTIE-WI 67 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEE----------eCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEEE-Ee
Confidence 678899999975432 4899999998 899999999999999999999999998865 68884 55
Q ss_pred cccc
Q 019312 99 GLDI 102 (343)
Q Consensus 99 gl~I 102 (343)
|.++
T Consensus 68 g~~~ 71 (305)
T PRK13651 68 FKDE 71 (305)
T ss_pred ceec
Confidence 5544
No 150
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.8e-08 Score=92.27 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=56.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+... .+++++++++ .+|++++|+||||||||||++.|++.+++. .|++ .|.|.+
T Consensus 2 l~~~~l~~~~~~~~-~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~~ 65 (275)
T PRK13639 2 LETRDLKYSYPDGT-EALKGINFKA----------EKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEV-LIKGEP 65 (275)
T ss_pred EEEEEEEEEeCCCC-eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ccEE-EECCEE
Confidence 46788999987433 4899999998 899999999999999999999999998754 7888 488887
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 ~~ 67 (275)
T PRK13639 66 IK 67 (275)
T ss_pred Cc
Confidence 74
No 151
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.59 E-value=8.2e-08 Score=100.11 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=61.5
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+++|.|+.....+++++++++ ++|+.++|+||||||||||++.|++.++|. .|++. +.
T Consensus 311 ~~~I~~~~v~~~y~~~~~~~l~~i~~~i----------~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~----~G~i~-~~ 375 (569)
T PRK10789 311 RGELDVNIRQFTYPQTDHPALENVNFTL----------KPGQMLGICGPTGSGKSTLLSLIQRHFDVS----EGDIR-FH 375 (569)
T ss_pred CCcEEEEEEEEECCCCCCccccCeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCEEE-EC
Confidence 4579999999999875555899999998 899999999999999999999999998865 68884 77
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 376 g~~~~~ 381 (569)
T PRK10789 376 DIPLTK 381 (569)
T ss_pred CEEHhh
Confidence 877754
No 152
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.58 E-value=6.2e-08 Score=91.41 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=56.6
Q ss_pred eeecccCCcCCcc-------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 22 YSSFYSPFLHPKR-------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 22 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++..+|. .|++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i 68 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI----------EEGETVGLLGRSGCGKSTLARLLLGLEKPA----QGTV 68 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence 5678888888642 234899999998 899999999999999999999999998754 6888
Q ss_pred EEEecccccC
Q 019312 95 QVYKGLDITT 104 (343)
Q Consensus 95 qvy~gl~I~T 104 (343)
.+.|.++..
T Consensus 69 -~~~g~~i~~ 77 (265)
T TIGR02769 69 -SFRGQDLYQ 77 (265)
T ss_pred -EECCEEccc
Confidence 478887754
No 153
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=6.3e-08 Score=89.22 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=54.0
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+......++++++++ .+|++++|+||||||||||++.|++..+|. .|.+ .+.|.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~ 66 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDI----------PAGETVALVGPSGSGKSTLVNLIPRFYDVD----SGRI-LIDGHDV 66 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccCC----CCEE-EECCEEh
Confidence 566777777644334899999998 899999999999999999999999998754 6888 4777766
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 67 ~ 67 (234)
T cd03251 67 R 67 (234)
T ss_pred h
Confidence 4
No 154
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.58 E-value=8.4e-08 Score=88.29 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=55.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~ 69 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSL----------RAGEFKLITGPSGCGKSTLLKIVASLISPT----SGTLL-FEGE 69 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCeEE-ECCE
Confidence 4788899998863 23899999998 899999999999999999999999987644 68884 6776
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++.+
T Consensus 70 ~~~~ 73 (225)
T PRK10247 70 DIST 73 (225)
T ss_pred EcCc
Confidence 6643
No 155
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.57 E-value=7.6e-08 Score=88.31 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=57.7
Q ss_pred cceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..+++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~ 74 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTL----------HPGEVTALVGPSGSGKSTVVALLENFYQPQ----GGQV-LLD 74 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CcEE-EEC
Confidence 5688999999997532 34899999998 899999999999999999999999998754 6877 467
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 75 g~~~~ 79 (226)
T cd03248 75 GKPIS 79 (226)
T ss_pred CCchH
Confidence 76654
No 156
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.57 E-value=6.7e-08 Score=100.86 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=59.2
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+.+. .+++++++++ ++|+.++|+||||||||||++.|++.+ |. .|++ .+.
T Consensus 347 ~~~i~~~~vsf~~~~~~-~vL~~i~l~i----------~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~----~G~I-~i~ 409 (588)
T PRK11174 347 PVTIEAEDLEILSPDGK-TLAGPLNFTL----------PAGQRIALVGPSGAGKTSLLNALLGFL-PY----QGSL-KIN 409 (588)
T ss_pred CceEEEEeeEEeccCCC-eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCC-CC----CcEE-EEC
Confidence 45799999998777554 4899999998 999999999999999999999999998 55 6888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.|+..
T Consensus 410 g~~i~~ 415 (588)
T PRK11174 410 GIELRE 415 (588)
T ss_pred CEeccc
Confidence 887754
No 157
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.57 E-value=4.6e-08 Score=82.66 Aligned_cols=120 Identities=20% Similarity=0.310 Sum_probs=69.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccCh-hhhhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTP-DDFRLQA 139 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~-~~f~~~a 139 (343)
+|+++||+||||||+++.|++.++ ..+|+.|.+. ..+.- +..++ ... .... ..+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-~~~i~~D~~~--~~~~~-~~~~~----------------~~~-~~~~~~~~~~~~ 59 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-AVVISQDEIR--RRLAG-EDPPS----------------PSD-YIEAEERAYQIL 59 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-EEEEEHHHHH--HHHCC-SSSGC----------------CCC-CHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CEEEeHHHHH--HHHcc-ccccc----------------chh-HHHHHHHHHHHH
Confidence 588999999999999999999998 8888888762 11110 00000 000 0000 1122233
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD 217 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~ 217 (343)
...+....+.|. ++|+-.|+++-...-. +. .+.....+.+.+++|+++.+.+.+|+..|...
T Consensus 60 ~~~~~~~l~~g~-~~vvd~~~~~~~~r~~---------~~------~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 60 NAAIRKALRNGN-SVVVDNTNLSREERAR---------LR------ELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHHHTT--EEEEESS--SHHHHHH---------HH------HHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHHHcCC-CceeccCcCCHHHHHH---------HH------HHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 345555555665 4666666554322110 00 01112245678899999999999999988765
No 158
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.57 E-value=7.1e-08 Score=89.20 Aligned_cols=66 Identities=24% Similarity=0.344 Sum_probs=54.0
Q ss_pred eecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 23 SSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
++.++++.|+... ..+++++++++ .+|++++|+||||||||||++.|++.+++. .|++ .+.|.+
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~ 66 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTI----------PPGKTVALVGSSGCGKSTVVSLLERFYDPT----SGEI-LLDGVD 66 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEe----------cCCCEEEEEeCCCCCHHHHHHHHhccCCCC----CCEE-EECCEe
Confidence 5677888886432 34889999998 899999999999999999999999998754 6888 477776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 67 ~~ 68 (238)
T cd03249 67 IR 68 (238)
T ss_pred hh
Confidence 64
No 159
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.57 E-value=8.3e-08 Score=86.31 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=64.3
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+.+.+|.|.|-+- +-..++++ ..+++++|+||||||||||...+|+...|. .|.+ ...|.|
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v----------~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~----~G~i-~i~g~d 62 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTV----------PAGEIVAILGPSGAGKSTLLNLIAGFETPA----SGEI-LINGVD 62 (231)
T ss_pred ccccceEEeeCcc----eEEEEEee----------cCCcEEEEECCCCccHHHHHHHHHhccCCC----CceE-EEcCee
Confidence 3467788888744 23555665 779999999999999999999999998776 7888 588999
Q ss_pred ccCCCCCccccccc--CccccccccCCC
Q 019312 102 ITTNKIPSHKRHNV--PHHLLGEFVPDD 127 (343)
Q Consensus 102 I~T~kp~~~e~~~i--~h~li~~~~~~~ 127 (343)
.+...|...-...+ .|.|+..+++.+
T Consensus 63 ~t~~~P~~RPVSmlFQEnNLFaHLtV~q 90 (231)
T COG3840 63 HTASPPAERPVSMLFQENNLFAHLTVAQ 90 (231)
T ss_pred cCcCCcccCChhhhhhccccchhhhhhh
Confidence 98766653222222 567777776665
No 160
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=7.2e-08 Score=89.19 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=56.4
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~ 67 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHI----------NQGEIVTLIGANGAGKTTLLGTLCGDPRAT----SGRIV-FDGK 67 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CceEE-ECCE
Confidence 3778899998863 34899999998 899999999999999999999999998754 78884 7777
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++.+
T Consensus 68 ~~~~ 71 (237)
T PRK11614 68 DITD 71 (237)
T ss_pred ecCC
Confidence 7643
No 161
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=6.6e-08 Score=85.46 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=52.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. ..++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~--~~l~~~~~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i-~~~g~~~ 64 (173)
T cd03230 2 EVRNLSKRYGKK--TALDDISLTV----------EKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEI-KVLGKDI 64 (173)
T ss_pred EEEEEEEEECCe--eeeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECCEEc
Confidence 456777777642 3899999998 889999999999999999999999998754 6888 4777776
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (173)
T cd03230 65 K 65 (173)
T ss_pred c
Confidence 4
No 162
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=7.2e-08 Score=106.25 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=65.2
Q ss_pred CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
....+++.+|.|.||.++ -.+|+++++.+ +.|+.++|+|||||||||+...|.+.++|. .|++ .
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i----------~~G~~valVG~SGsGKST~i~LL~RfydP~----~G~V-~ 411 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKI----------PSGQTVALVGPSGSGKSTLIQLLARFYDPT----SGEV-L 411 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEe----------CCCCEEEEECCCCCCHHHHHHHHHHhcCCC----CceE-E
Confidence 348899999999999887 35999999998 899999999999999999999999999976 7888 5
Q ss_pred EecccccCCC
Q 019312 97 YKGLDITTNK 106 (343)
Q Consensus 97 y~gl~I~T~k 106 (343)
.+|.||-+-.
T Consensus 412 idG~di~~~~ 421 (1228)
T KOG0055|consen 412 IDGEDIRNLN 421 (1228)
T ss_pred EcCccchhcc
Confidence 7888886544
No 163
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.57 E-value=7.3e-08 Score=87.33 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=53.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~v-~~~g~~ 64 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTL----------NAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEV-LWQGEP 64 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEE----------CCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence 356677777754 34899999998 899999999999999999999999998754 6888 477776
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 65 ~~~ 67 (204)
T PRK13538 65 IRR 67 (204)
T ss_pred ccc
Confidence 643
No 164
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.57 E-value=6.5e-08 Score=89.63 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=54.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. +.+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~ 64 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNI----------DQGEVVVIIGPSGSGKSTLLRCINKLEEIT----SGDL-IVDGLK 64 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence 467788888763 34899999998 899999999999999999999999988754 6888 477777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 65 ~~ 66 (240)
T PRK09493 65 VN 66 (240)
T ss_pred CC
Confidence 64
No 165
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=7.3e-08 Score=88.90 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=53.9
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+... .+++++++++ .+|.+++|+||||||||||++.|++..++. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~~-~~l~~i~~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~v-~~~g~~~ 65 (236)
T cd03253 2 EFENVTFAYDPGR-PVLKDVSFTI----------PAGKKVAIVGPSGSGKSTILRLLFRFYDVS----SGSI-LIDGQDI 65 (236)
T ss_pred EEEEEEEEeCCCC-ceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCEE-EECCEEh
Confidence 5677888886433 3899999998 899999999999999999999999998754 6888 4777766
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 66 ~ 66 (236)
T cd03253 66 R 66 (236)
T ss_pred h
Confidence 4
No 166
>PRK13949 shikimate kinase; Provisional
Probab=98.57 E-value=1.4e-07 Score=83.62 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=70.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
..|+|+|++||||||+++.||+.++ ..+|+.|.+ +-... + + ..-+..+ ......|++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~-~~~id~D~~-i~~~~--~--~--------------~~~~~~~-~~g~~~fr~~e 60 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG-LSFIDLDFF-IENRF--H--K--------------TVGDIFA-ERGEAVFRELE 60 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CCeecccHH-HHHHH--C--c--------------cHHHHHH-HhCHHHHHHHH
Confidence 3589999999999999999999998 888888865 11100 0 0 0011112 34556788877
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK 213 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 213 (343)
.+++.++.......|.+||.... ++.... .++-...+|||+.+.+.+.+||..
T Consensus 61 ~~~l~~l~~~~~~vis~Ggg~~~---------~~~~~~------------~l~~~~~vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 61 RNMLHEVAEFEDVVISTGGGAPC---------FFDNME------------LMNASGTTVYLKVSPEVLFVRLRL 113 (169)
T ss_pred HHHHHHHHhCCCEEEEcCCcccC---------CHHHHH------------HHHhCCeEEEEECCHHHHHHHHhc
Confidence 78888876556655556664221 111000 001123578999999999999864
No 167
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=7e-08 Score=91.36 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=54.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 64 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDF----------SLSPVTGLVGANGCGKSTLFMNLSGLLRPQ----KGAV-LWQGKP 64 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----ccEE-EECCEE
Confidence 467788888863 34899999998 889999999999999999999999998754 6888 477877
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 65 i~ 66 (271)
T PRK13638 65 LD 66 (271)
T ss_pred cc
Confidence 74
No 168
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.57 E-value=7e-08 Score=89.88 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=54.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++.+++. .|.+ .+.|.+
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~ 66 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEV----------KPGEVVAIIGPSGSGKTTLLRCINLLEQPE----AGTI-RVGDIT 66 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EECCEE
Confidence 678899998864 24899999998 899999999999999999999999988744 6777 367777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 67 ~~ 68 (250)
T PRK11264 67 ID 68 (250)
T ss_pred cc
Confidence 64
No 169
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.57 E-value=7.1e-08 Score=94.90 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=58.6
Q ss_pred eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i----------~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~----~G~I-~i~G 66 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHV----------PAGQIYGVIGASGAGKSTLIRCVNLLERPT----SGSV-IVDG 66 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECC
Confidence 5778888888632 235899999998 899999999999999999999999998754 7888 5889
Q ss_pred ccccCCC
Q 019312 100 LDITTNK 106 (343)
Q Consensus 100 l~I~T~k 106 (343)
.++....
T Consensus 67 ~~i~~~~ 73 (343)
T TIGR02314 67 QDLTTLS 73 (343)
T ss_pred EECCcCC
Confidence 8886543
No 170
>PRK00625 shikimate kinase; Provisional
Probab=98.57 E-value=1.2e-07 Score=84.76 Aligned_cols=115 Identities=14% Similarity=0.225 Sum_probs=73.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD 140 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~ 140 (343)
.|+|+|+.||||||+++.||+.++ ..+|+.|.+ +-+.. .+-.|. ...+..+ ......|++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~-~~~id~D~~-I~~~~------------g~~~~~--~i~eif~-~~Ge~~fr~~E~ 64 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS-LPFFDTDDL-IVSNY------------HGALYS--SPKEIYQ-AYGEEGFCREEF 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CCEEEhhHH-HHHHh------------CCCCCC--CHHHHHH-HHCHHHHHHHHH
Confidence 488999999999999999999998 888888876 11100 000000 0111112 455677888888
Q ss_pred HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
+.+.++.. +...|.+||.... +++. +. .+....+++||+.+.+.+.+||.+|
T Consensus 65 ~~l~~l~~-~~~VIs~GGg~~~---------~~e~--~~----------~l~~~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 65 LALTSLPV-IPSIVALGGGTLM---------IEPS--YA----------HIRNRGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred HHHHHhcc-CCeEEECCCCccC---------CHHH--HH----------HHhcCCEEEEEECCHHHHHHHHhcC
Confidence 88887764 4545556664322 1111 10 0112346899999999999999877
No 171
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.57 E-value=7.1e-08 Score=85.95 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=53.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.| +++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.+
T Consensus 5 l~~~~l~~~~------~l~~vs~~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~ 63 (182)
T cd03215 5 LEVRGLSVKG------AVRDVSFEV----------RAGEIVGIAGLVGNGQTELAEALFGLRPPA----SGEI-TLDGKP 63 (182)
T ss_pred EEEeccEEEe------eecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEE
Confidence 6677888876 789999998 889999999999999999999999998754 6888 477877
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 64 ~~~~ 67 (182)
T cd03215 64 VTRR 67 (182)
T ss_pred CCcc
Confidence 7644
No 172
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.56 E-value=6.7e-08 Score=87.54 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=52.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~~~~~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~~ 64 (208)
T cd03268 2 KTNDLTKTYGK--KRVLDDISLHV----------KKGEIYGFLGPNGAGKTTTMKIILGLIKPD----SGEI-TFDGKSY 64 (208)
T ss_pred EEEEEEEEECC--eEeEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----ceEE-EECCCcc
Confidence 56778888753 34899999998 889999999999999999999999988754 6888 4667665
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (208)
T cd03268 65 Q 65 (208)
T ss_pred c
Confidence 4
No 173
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.56 E-value=6.7e-08 Score=90.30 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=53.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++. +.|.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~ 63 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSV----------AAGEKVALIGPSGSGKSTILRILMTLEPID----EGQIQ-VEGEQ 63 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEE
Confidence 357788888863 34899999998 899999999999999999999999988754 67774 67766
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 64 i~ 65 (252)
T TIGR03005 64 LY 65 (252)
T ss_pred cc
Confidence 63
No 174
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=5.9e-08 Score=89.05 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=57.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
|+..+++++-. .+..+.+++++. .+|++.+|+||||+|||||.+.|.+.+.|. .|.+ -|.|.+
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~----------~pGev~ailGPNGAGKSTlLk~LsGel~p~----~G~v-~~~g~~ 64 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDL----------RPGEVLAILGPNGAGKSTLLKALSGELSPD----SGEV-TLNGVP 64 (259)
T ss_pred eeeeeeEEEee--cceeccCcceec----------cCCcEEEEECCCCccHHHHHHHhhCccCCC----CCeE-eeCCcC
Confidence 34556665554 345789999997 899999999999999999999999999865 6788 488998
Q ss_pred ccCCCCCc
Q 019312 102 ITTNKIPS 109 (343)
Q Consensus 102 I~T~kp~~ 109 (343)
+.+.+|..
T Consensus 65 l~~~~~~~ 72 (259)
T COG4559 65 LNSWPPEE 72 (259)
T ss_pred hhhCCHHH
Confidence 87766543
No 175
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.56 E-value=1.1e-07 Score=81.25 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=69.3
Q ss_pred EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhH
Q 019312 62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADN 141 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~ 141 (343)
|+|+|++||||||+++.|++.++ ..+++.|.+ +..-. +. +.....+ .++...|.....+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~-~~~~~~d~~-~~~~~-------------~~-----~~~~~~~-~~~~~~~~~~e~~ 60 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG-LPFVDLDEL-IEQRA-------------GM-----SIPEIFA-EEGEEGFRELERE 60 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CCEEEchHH-HHHHc-------------CC-----CHHHHHH-HHCHHHHHHHHHH
Confidence 78999999999999999999998 888888866 11100 00 0001111 3344567766666
Q ss_pred HHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 142 AISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 142 ~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
.+..+...+.. ||++|++..+ |+.. . + ....+..++||.++.+.+.+|+.+|
T Consensus 61 ~~~~~~~~~~~-vi~~g~~~i~--------~~~~---~-----~----~~~~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 61 VLLLLLTKENA-VIATGGGAVL--------REEN---R-----R----LLLENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred HHHHHhccCCc-EEECCCCccC--------cHHH---H-----H----HHHcCCeEEEEeCCHHHHHHHhccC
Confidence 77777776665 4544544322 1110 0 0 0011346889999999999999876
No 176
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.1e-07 Score=91.01 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-
Q 019312 9 PTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE- 87 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e- 87 (343)
|...+....+...+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.+++..
T Consensus 27 ~~~~~~~~~~~~~l~i~~l~~~~~~--~~il~~is~~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~ 94 (285)
T PRK14254 27 PSGDPAASSGETVIEARDLNVFYGD--EQALDDVSMDI----------PENQVTAMIGPSGCGKSTFLRCINRMNDLIDA 94 (285)
T ss_pred CCCCccccCCCceEEEEEEEEEECC--EeeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCcccC
Confidence 3334444455667899999999964 34899999998 8999999999999999999999999875210
Q ss_pred eecCCceEEEeccccc
Q 019312 88 IINSDKMQVYKGLDIT 103 (343)
Q Consensus 88 IIs~Ds~qvy~gl~I~ 103 (343)
..+.|++. +.|.++.
T Consensus 95 ~p~~G~I~-i~G~~i~ 109 (285)
T PRK14254 95 ARVEGELT-FRGKNVY 109 (285)
T ss_pred CCCceEEE-ECCEEcc
Confidence 01368884 6777664
No 177
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.56 E-value=8.6e-08 Score=86.60 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=53.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+.+.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v-~~~g~~ 64 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHL----------PAGGLLHLKGSNGAGKTTLLKLIAGLLNPE----KGEI-LFERQS 64 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeeE-EECCCc
Confidence 457788888864 23899999998 899999999999999999999999998754 6777 367766
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 65 ~~ 66 (200)
T PRK13540 65 IK 66 (200)
T ss_pred cc
Confidence 64
No 178
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=6.5e-08 Score=87.82 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=51.9
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. ..++++++++ .++ +++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~~~~~~~~~--~~l~~vs~~i----------~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~~ 63 (211)
T cd03264 2 QLENLTKRYGKK--RALDGVSLTL----------GPG-MYGLLGPNGAGKTTLMRILATLTPPS----SGTI-RIDGQDV 63 (211)
T ss_pred EEEEEEEEECCE--EEEcceeEEE----------cCC-cEEEECCCCCCHHHHHHHHhCCCCCC----ccEE-EECCCcc
Confidence 567888888642 4899999998 778 99999999999999999999988754 6888 4677665
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 64 ~ 64 (211)
T cd03264 64 L 64 (211)
T ss_pred c
Confidence 4
No 179
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.55 E-value=8.4e-08 Score=90.80 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=56.8
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~ 69 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTV----------PRGKITAIMGPSGIGKTTLLRLIGGQIAPD----HGEIL-FDGE 69 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-ECCE
Confidence 4788999998863 34899999998 899999999999999999999999998754 68884 7787
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 70 ~i~~ 73 (269)
T PRK11831 70 NIPA 73 (269)
T ss_pred Eccc
Confidence 7754
No 180
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.55 E-value=9.3e-08 Score=86.46 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=52.1
Q ss_pred eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|.... +.+++++++++ ++|++++|+||||||||||++.|++..++. .|++. +.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i----------~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~----~G~i~-~~ 65 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEV----------PKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVS-VP 65 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhCcCCCC----CCeEE-Ec
Confidence 35778888887642 35899999998 899999999999999999999999988743 67774 44
Q ss_pred c
Q 019312 99 G 99 (343)
Q Consensus 99 g 99 (343)
|
T Consensus 66 g 66 (204)
T cd03250 66 G 66 (204)
T ss_pred C
Confidence 4
No 181
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=8.5e-08 Score=87.17 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=53.3
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .|.|.+
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~ 65 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTL----------AAGEALVLTGPNGSGKTTLLRLIAGLLPPA----AGTI-KLDGGD 65 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEe
Confidence 467788888764 34899999998 899999999999999999999999987744 6888 477766
Q ss_pred c
Q 019312 102 I 102 (343)
Q Consensus 102 I 102 (343)
+
T Consensus 66 ~ 66 (207)
T PRK13539 66 I 66 (207)
T ss_pred C
Confidence 4
No 182
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=8.8e-08 Score=91.61 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=57.6
Q ss_pred ceeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 21 HYSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
.+++.++++.|.... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~----~G~i~-~ 66 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFEL----------EEGSFVALVGHTGSGKSTLMQHFNALLKPS----SGTIT-I 66 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEEE-E
Confidence 357888999887432 34899999998 899999999999999999999999998864 78884 7
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 67 ~g~~~~~ 73 (287)
T PRK13641 67 AGYHITP 73 (287)
T ss_pred CCEECcc
Confidence 8887753
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=1.1e-07 Score=90.52 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=58.4
Q ss_pred ceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
-+++.++++.|+... ..+++++++++ .+|++++|+|+||||||||++.|++..++. .|++ .+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g 68 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSI----------TKGEWVSIIGQNGSGKSTTARLIDGLFEEF----EGKV-KIDG 68 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CCEE-EECC
Confidence 377889999997532 34899999998 899999999999999999999999998854 7888 4788
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 69 ~~i~~ 73 (277)
T PRK13642 69 ELLTA 73 (277)
T ss_pred EECCc
Confidence 87754
No 184
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.55 E-value=9.9e-08 Score=84.01 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=49.4
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+++.++++.|+.. ...++++++++ .+|++++|+||||||||||++.|++.+++. .|++.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEI----------KPGDRLLITGPSGTGKSSLFRALAGLWPWG----SGRIG 59 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceEE
Confidence 3567888888644 34899999998 899999999999999999999999998743 67773
No 185
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.54 E-value=1.1e-07 Score=99.29 Aligned_cols=69 Identities=29% Similarity=0.317 Sum_probs=59.9
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.+|+|.|+.. +.+++++++++ ++|+.++|+|+||||||||++.|++.++|. .|.+ .+.|
T Consensus 333 ~~I~~~~vsf~y~~~-~~iL~~inl~i----------~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~----~G~I-~i~g 396 (588)
T PRK13657 333 GAVEFDDVSFSYDNS-RQGVEDVSFEA----------KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ----SGRI-LIDG 396 (588)
T ss_pred CeEEEEEEEEEeCCC-CceecceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-EECC
Confidence 579999999999854 34899999998 999999999999999999999999999864 6777 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 397 ~~i~~ 401 (588)
T PRK13657 397 TDIRT 401 (588)
T ss_pred EEhhh
Confidence 77753
No 186
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.54 E-value=1.1e-07 Score=98.86 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred ccceeecccCCcCCcc---cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 19 QQHYSSFYSPFLHPKR---RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
..++++.+|+|.|+.. .+.+++++++++ ++|+.++|+||||||||||++.|++.++|. .|++.
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i----------~~G~~~aivG~sGsGKSTl~~ll~g~~~p~----~G~i~ 400 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRI----------AQGDIVFIVGENGCGKSTLAKLFCGLYIPQ----EGEIL 400 (555)
T ss_pred CceEEEEEEEEEeCCCCCCcCceeccceEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE
Confidence 3679999999999853 234899999998 899999999999999999999999998864 68884
Q ss_pred EEeccccc
Q 019312 96 VYKGLDIT 103 (343)
Q Consensus 96 vy~gl~I~ 103 (343)
+.|.++.
T Consensus 401 -~~g~~i~ 407 (555)
T TIGR01194 401 -LDGAAVS 407 (555)
T ss_pred -ECCEECC
Confidence 6777764
No 187
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1e-07 Score=90.32 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCc
Q 019312 15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDK 93 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds 93 (343)
..+.+..+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++.. ....|+
T Consensus 7 ~~~~~~~l~i~nl~~~~~~--~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~ 74 (269)
T PRK14259 7 KISKNIIISLQNVTISYGT--FEAVKNVFCDI----------PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74 (269)
T ss_pred CCCCCceEEEEeEEEEECC--EEEEcceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 3455667999999999874 24899999998 8999999999999999999999999865210 013677
Q ss_pred eEEEeccccc
Q 019312 94 MQVYKGLDIT 103 (343)
Q Consensus 94 ~qvy~gl~I~ 103 (343)
+. +.|.++.
T Consensus 75 v~-~~g~~i~ 83 (269)
T PRK14259 75 VL-FDGTDLY 83 (269)
T ss_pred EE-ECCEEcc
Confidence 74 7777664
No 188
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=89.26 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=61.4
Q ss_pred CCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-e
Q 019312 11 PACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-I 89 (343)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-I 89 (343)
|+..-.|++..+++.++++.|+.. .+++++++++ .+|++++|+||||||||||++.|++...+..- .
T Consensus 6 ~~~~~~~~~~~l~~~~l~~~~~~~--~vl~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 73 (265)
T PRK14252 6 PAGDVSPTQQKSEVNKLNFYYGGY--QALKNINMMV----------HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH 73 (265)
T ss_pred cCCCccCCCceEEEEEEEEEECCe--eeeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCC
Confidence 455566777889999999999742 4899999998 89999999999999999999999998752100 1
Q ss_pred cCCceEEEecccc
Q 019312 90 NSDKMQVYKGLDI 102 (343)
Q Consensus 90 s~Ds~qvy~gl~I 102 (343)
..|++. +.|.++
T Consensus 74 ~sG~i~-~~g~~~ 85 (265)
T PRK14252 74 YEGEII-LHPDNV 85 (265)
T ss_pred cccEEE-EcCccc
Confidence 256773 555544
No 189
>PRK13947 shikimate kinase; Provisional
Probab=98.54 E-value=1.5e-07 Score=82.31 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=76.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCc-cccccccCCCcccChhhhhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH-HLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h-~li~~~~~~~~~~s~~~f~~~a 139 (343)
.|+|+|+.||||||+++.||+.++ ..+|+.|.+ .+.. .+.+- .++ + .+....|....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg-~~~id~d~~--~~~~------------~g~~~~~~~------~-~~ge~~~~~~e 60 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS-FGFIDTDKE--IEKM------------TGMTVAEIF------E-KDGEVRFRSEE 60 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC-CCEEECchh--hhhh------------cCCcHHHHH------H-HhChHHHHHHH
Confidence 589999999999999999999998 888888876 1111 11110 011 1 22334566666
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHHH-
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDM- 218 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~M- 218 (343)
...++.+...+...|-+||.-. .|+.. .. .+ +....++||.++.+.+.+|+..|-...
T Consensus 61 ~~~~~~l~~~~~~vi~~g~g~v---------l~~~~--~~------~l----~~~~~vv~L~~~~~~l~~Rl~~r~~rp~ 119 (171)
T PRK13947 61 KLLVKKLARLKNLVIATGGGVV---------LNPEN--VV------QL----RKNGVVICLKARPEVILRRVGKKKSRPL 119 (171)
T ss_pred HHHHHHHhhcCCeEEECCCCCc---------CCHHH--HH------HH----HhCCEEEEEECCHHHHHHHhcCCCCCCC
Confidence 6677777655554444454311 12211 00 00 011247899999999999998764331
Q ss_pred -HhccHHHHHHHHHh
Q 019312 219 -LESGMFEELAEFFD 232 (343)
Q Consensus 219 -l~~GlleEv~~l~~ 232 (343)
....+.+++.++++
T Consensus 120 ~~~~~~~~~i~~~~~ 134 (171)
T PRK13947 120 LMVGDPEERIKELLK 134 (171)
T ss_pred CCCCChHHHHHHHHH
Confidence 13445666665543
No 190
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1e-07 Score=93.20 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~q 95 (343)
|....+++.++++.|+...+.+|+++++++ .+|++++|+||||||||||++.|++...+. .....|++
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I----------~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I- 144 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDI----------KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI- 144 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-
Confidence 555678999999999865555899999998 899999999999999999999999987410 01236888
Q ss_pred EEecccccC
Q 019312 96 VYKGLDITT 104 (343)
Q Consensus 96 vy~gl~I~T 104 (343)
.+.|.+|..
T Consensus 145 ~idG~~i~~ 153 (329)
T PRK14257 145 YFLGTNTRS 153 (329)
T ss_pred EECCEEccc
Confidence 478888753
No 191
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.54 E-value=1.1e-07 Score=89.27 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=55.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .|.|.
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~ 68 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDL----------YPGEVLGIVGESGSGKTTLLNALSARLAPD----AGEV-HYRMR 68 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEE----------eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCc
Confidence 4788999999874 24899999998 899999999999999999999999998754 6888 47777
Q ss_pred c
Q 019312 101 D 101 (343)
Q Consensus 101 ~ 101 (343)
+
T Consensus 69 ~ 69 (258)
T PRK11701 69 D 69 (258)
T ss_pred c
Confidence 6
No 192
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.54 E-value=9.9e-08 Score=90.07 Aligned_cols=67 Identities=18% Similarity=0.095 Sum_probs=55.4
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+-.+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.
T Consensus 10 ~~~l~i~~l~~~~~~--~~il~~isl~i----------~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~----~G~i~-~~ 72 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--RTVLNQLDLHI----------PAGQFVAVVGRSGCGKSTLLRLLAGLETPS----AGELL-AG 72 (257)
T ss_pred CCcEEEEEEEEEECC--cceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEEE-EC
Confidence 345889999999864 34899999998 899999999999999999999999998754 67773 55
Q ss_pred cccc
Q 019312 99 GLDI 102 (343)
Q Consensus 99 gl~I 102 (343)
|.++
T Consensus 73 g~~~ 76 (257)
T PRK11247 73 TAPL 76 (257)
T ss_pred CEEH
Confidence 6554
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.54 E-value=1.1e-07 Score=90.07 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=57.2
Q ss_pred eeecccCCcCCcc-------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 22 YSSFYSPFLHPKR-------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 22 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+++.++++.|+.+ ...+++++++++ .+|++++|+||||||||||++.|++..++. .|++
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----sG~i 69 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL----------KSGETVALLGRSGCGKSTLARLLVGLESPS----QGNV 69 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence 6788999999741 244899999998 899999999999999999999999988754 7888
Q ss_pred EEEecccccCC
Q 019312 95 QVYKGLDITTN 105 (343)
Q Consensus 95 qvy~gl~I~T~ 105 (343)
. +.|.++...
T Consensus 70 ~-~~g~~~~~~ 79 (268)
T PRK10419 70 S-WRGEPLAKL 79 (268)
T ss_pred E-ECCEecccc
Confidence 4 778776543
No 194
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.53 E-value=1.1e-07 Score=93.54 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=58.4
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.+++..|... .+++++++++ .+|++++|+||||||||||++.|++.+.|. .|.+. +.|
T Consensus 40 ~~i~i~nl~k~y~~~--~~l~~is~~i----------~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~----~G~i~-i~G 102 (340)
T PRK13536 40 VAIDLAGVSKSYGDK--AVVNGLSFTV----------ASGECFGLLGPNGAGKSTIARMILGMTSPD----AGKIT-VLG 102 (340)
T ss_pred eeEEEEEEEEEECCE--EEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----ceEEE-ECC
Confidence 358888999998743 4899999998 899999999999999999999999998765 78885 778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 103 ~~~~~ 107 (340)
T PRK13536 103 VPVPA 107 (340)
T ss_pred EECCc
Confidence 88754
No 195
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.53 E-value=1e-07 Score=89.66 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=55.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~----~G~i-~~~g~~ 65 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTL----------RPGEVVAILGPNGAGKSTLLRALSGELSPD----SGEV-RLNGRP 65 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCEE
Confidence 567888888864 34899999998 899999999999999999999999998754 6888 477777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 ~~ 67 (258)
T PRK13548 66 LA 67 (258)
T ss_pred cc
Confidence 64
No 196
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.53 E-value=2.6e-07 Score=81.37 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=63.9
Q ss_pred EcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHH
Q 019312 65 MGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAIS 144 (343)
Q Consensus 65 ~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~ 144 (343)
+||+||||||++..|++.++ ...++.|.++. + ..+ .....+++++ + -....|.........
T Consensus 1 ~G~sGsGKSTla~~la~~l~-~~~~~~d~~~~-~-~~~------~~~~~g~~~~--------~--~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-AAFLDGDFLHP-R-RNI------EKMASGEPLN--------D--DDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-CeEEeCccCCc-h-hhh------ccccCCCCCC--------h--hhHHHHHHHHHHHHH
Confidence 69999999999999999997 66777665520 0 000 0011122221 1 122334433333333
Q ss_pred HHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 145 DIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 145 ~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
.....+...|++ .|.+ .+..-. .+.. ...++.++||.++.++|.+|+..|-.
T Consensus 62 ~~~~~~~~~viv-~s~~-~~~~r~--------~~~~----------~~~~~~~v~l~a~~~~l~~Rl~~R~~ 113 (163)
T PRK11545 62 AMQRTNKVSLIV-CSAL-KKHYRD--------LLRE----------GNPNLSFIYLKGDFDVIESRLKARKG 113 (163)
T ss_pred HHHHcCCceEEE-Eecc-hHHHHH--------HHHc----------cCCCEEEEEEECCHHHHHHHHHhccC
Confidence 333345666666 4443 111110 1111 12457899999999999999999964
No 197
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1e-07 Score=93.11 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=57.9
Q ss_pred eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+.. ...+++++++++ .+|++++|+|+||||||||++.|++.+++..-.+.|++ .|.|
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i----------~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g 72 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTL----------TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDD 72 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECC
Confidence 5677888888642 234899999998 89999999999999999999999998862112347888 5889
Q ss_pred ccccCC
Q 019312 100 LDITTN 105 (343)
Q Consensus 100 l~I~T~ 105 (343)
.++...
T Consensus 73 ~~i~~~ 78 (330)
T PRK15093 73 IDLLRL 78 (330)
T ss_pred EECCcC
Confidence 888654
No 198
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.53 E-value=8.3e-08 Score=86.60 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=50.6
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++.
T Consensus 2 ~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~~ 63 (206)
T TIGR03608 2 KNISKKFGD--KIILDDLNLTI----------EKGKMYAIIGESGSGKSTLLNIIGLLEKFD----SGQV-YLNGKETP 63 (206)
T ss_pred cceEEEECC--EEEEeceEEEE----------eCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EECCEEcc
Confidence 456677763 24899999998 889999999999999999999999998754 6887 47776653
No 199
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.53 E-value=1.2e-07 Score=108.87 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|..+++++.+|+|.|+.+.+.+|+++++++ ++|+.++|+|+||||||||+..|++... . .|++ .
T Consensus 1213 p~~g~I~f~nVs~~Y~~~~~~vL~~is~~I----------~~GekvaIvGrSGsGKSTLl~lL~rl~~-~----~G~I-~ 1276 (1490)
T TIGR01271 1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSV----------EGGQRVGLLGRTGSGKSTLLSALLRLLS-T----EGEI-Q 1276 (1490)
T ss_pred CCCCeEEEEEEEEEeCCCCcceeeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHhhhcC-C----CcEE-E
Confidence 456789999999999987777999999998 8999999999999999999999999875 3 6888 5
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.||.+-
T Consensus 1277 IdG~di~~i 1285 (1490)
T TIGR01271 1277 IDGVSWNSV 1285 (1490)
T ss_pred ECCEEcccC
Confidence 889998643
No 200
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=9.6e-08 Score=89.21 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=57.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~ 67 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEV----------REQEIVSLIGPNGAGKTTVFNCLTGFYKPT----GGTIL-LRGQ 67 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEE----------cCCeEEEEECCCCCCHHHHHHHHhCCcCCC----cceEE-ECCE
Confidence 4788999999863 34899999998 889999999999999999999999998754 78884 7787
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 68 ~~~~ 71 (255)
T PRK11300 68 HIEG 71 (255)
T ss_pred ECCC
Confidence 7654
No 201
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.53 E-value=1.1e-07 Score=85.46 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=51.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ...+ ++++++ .+|++++|+||||||||||++.|++..++. .|++. +.|.+
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~ 63 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITF----------LPSAITYIKGANGCGKSSLLRMIAGIMQPS----SGNIY-YKNCN 63 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CcEEE-ECCcc
Confidence 467788888853 3344 599997 899999999999999999999999998754 78884 77776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 64 i~ 65 (195)
T PRK13541 64 IN 65 (195)
T ss_pred cC
Confidence 64
No 202
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1e-07 Score=86.65 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=58.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
.....++..|+..+.+.+.++++++ .++..++++||||||||||...+|+...|. .+++| ..|..
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~i----------a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~----~G~i~-l~~r~ 68 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTI----------ASGELVVVLGPSGCGKTTLLNLIAGFVTPS----RGSIQ-LNGRR 68 (259)
T ss_pred eehhheEEecCCcchhhhhccceee----------cCCCEEEEEcCCCccHHHHHHHHhcCcCcc----cceEE-ECCEe
Confidence 3456677788877788999999998 889999999999999999999999999875 79998 77777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
|.
T Consensus 69 i~ 70 (259)
T COG4525 69 IE 70 (259)
T ss_pred cc
Confidence 75
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.1e-07 Score=89.87 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=57.7
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQV 96 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qv 96 (343)
.+..+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .-...|++ .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~ 82 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDI----------PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-T 82 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-E
Confidence 3457899999999974 34899999998 899999999999999999999999987530 00125777 4
Q ss_pred Eeccccc
Q 019312 97 YKGLDIT 103 (343)
Q Consensus 97 y~gl~I~ 103 (343)
+.|.++.
T Consensus 83 ~~g~~i~ 89 (267)
T PRK14235 83 LDGEDIY 89 (267)
T ss_pred ECCEECc
Confidence 6777664
No 204
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.53 E-value=1e-07 Score=85.94 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=52.1
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|.. ...++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 64 (198)
T TIGR01189 2 AARNLACSRGE--RMLFEGLSFTL----------NAGEALQVTGPNGIGKTTLLRILAGLLRPD----SGEV-RWNGTAL 64 (198)
T ss_pred EEEEEEEEECC--EEEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ccEE-EECCEEc
Confidence 45566666653 24799999998 899999999999999999999999988754 6777 4777766
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (198)
T TIGR01189 65 AE 66 (198)
T ss_pred cc
Confidence 43
No 205
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.53 E-value=1.1e-07 Score=89.02 Aligned_cols=69 Identities=9% Similarity=0.138 Sum_probs=56.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.| +. .+++++++++ .+|++++|+||||||||||++.|++..++......|++ .+.|.
T Consensus 4 ~l~~~~l~~~~--~~-~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--AQ-PLVHGVSLTL----------QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGK 69 (254)
T ss_pred EEEEeCeEEEe--cc-ceecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCe
Confidence 67889999988 33 4899999998 89999999999999999999999999874111136888 47777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 70 ~i~ 72 (254)
T PRK10418 70 PVA 72 (254)
T ss_pred ecc
Confidence 764
No 206
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.2e-07 Score=89.16 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=57.2
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQV 96 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qv 96 (343)
....+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+.+.+ .-+.|++.
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~- 76 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDI----------AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL- 76 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE-
Confidence 3456889999999974 24899999998 8999999999999999999999999874100 11267774
Q ss_pred Eeccccc
Q 019312 97 YKGLDIT 103 (343)
Q Consensus 97 y~gl~I~ 103 (343)
+.|.++.
T Consensus 77 ~~g~~~~ 83 (260)
T PRK10744 77 LDGENIL 83 (260)
T ss_pred ECCEEcc
Confidence 6777664
No 207
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.52 E-value=1.3e-07 Score=91.00 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=54.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
++..+++-.|.. ...+++++++++ .+|++++|+||||||||||++.|++...|. .|++. +.|.+
T Consensus 5 i~~~~l~k~~~~-~~~~l~~vs~~i----------~~Gei~gllG~NGAGKTTllk~l~gl~~p~----~G~i~-i~G~~ 68 (293)
T COG1131 5 IEVRNLTKKYGG-DKTALDGVSFEV----------EPGEIFGLLGPNGAGKTTLLKILAGLLKPT----SGEIL-VLGYD 68 (293)
T ss_pred eeecceEEEeCC-CCEEEeceeEEE----------cCCeEEEEECCCCCCHHHHHHHHhCCcCCC----ceEEE-EcCEe
Confidence 344566656653 234899999998 899999999999999999999999999864 78985 77888
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 69 ~~~~ 72 (293)
T COG1131 69 VVKE 72 (293)
T ss_pred CccC
Confidence 7643
No 208
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.52 E-value=9.7e-08 Score=88.35 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=52.9
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEecc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKGL 100 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~gl 100 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+ +|. .|++. +.|.
T Consensus 2 ~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~----~G~i~-~~g~ 64 (243)
T TIGR01978 2 KIKDLHVSVED--KEILKGVNLTV----------KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT----SGTIL-FKGQ 64 (243)
T ss_pred eEeeEEEEECC--EEEEeccceEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----cceEE-ECCE
Confidence 56788888863 34899999998 899999999999999999999999984 333 68884 7777
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 65 ~~~~ 68 (243)
T TIGR01978 65 DLLE 68 (243)
T ss_pred ecCC
Confidence 7653
No 209
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.52 E-value=1.2e-07 Score=87.41 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=49.3
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+.+.+.+..|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~~ 85 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEV----------PRGERIGLIGRNGAGKSTLLRLLAGIYPPD----SGTVT-VRGRV 85 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEE
Confidence 334445554443 34899999998 899999999999999999999999988754 67773 66655
Q ss_pred c
Q 019312 102 I 102 (343)
Q Consensus 102 I 102 (343)
+
T Consensus 86 ~ 86 (224)
T cd03220 86 S 86 (224)
T ss_pred c
Confidence 4
No 210
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.8e-07 Score=87.47 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=56.6
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~ 98 (343)
..+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+++.+. -..|++ .+.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDF----------PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI-LLD 69 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE-EEC
Confidence 35788899999873 34899999998 89999999999999999999999998741000 125777 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 70 g~~i~~ 75 (252)
T PRK14256 70 DTDIYD 75 (252)
T ss_pred CEEccc
Confidence 887753
No 211
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=1.1e-07 Score=93.92 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=57.8
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i----------~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~----~G~I-~~~g~ 66 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDV----------ADGEFIVLVGPSGCGKSTLLRMVAGLERIT----SGEI-WIGGR 66 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEE----------cCCCEEEEECCCCCcHHHHHHHHHCCCCCC----ceEE-EECCE
Confidence 36788899888533 34899999998 899999999999999999999999998754 7888 58888
Q ss_pred cccCC
Q 019312 101 DITTN 105 (343)
Q Consensus 101 ~I~T~ 105 (343)
++...
T Consensus 67 ~i~~~ 71 (356)
T PRK11650 67 VVNEL 71 (356)
T ss_pred ECCCC
Confidence 88643
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.51 E-value=1.2e-07 Score=88.51 Aligned_cols=64 Identities=20% Similarity=0.119 Sum_probs=53.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .|++. +.|.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~ 65 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDL----------YPGEVLGIVGESGSGKSTLLGCLAGRLAPD----HGTAT-YIMR 65 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE-Eecc
Confidence 3678899998864 23799999998 899999999999999999999999998754 68884 6665
Q ss_pred c
Q 019312 101 D 101 (343)
Q Consensus 101 ~ 101 (343)
+
T Consensus 66 ~ 66 (253)
T TIGR02323 66 S 66 (253)
T ss_pred c
Confidence 5
No 213
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.4e-07 Score=89.26 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=56.6
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~ 98 (343)
..+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++...+. +....|++. +.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~ 85 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQF----------EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL-YR 85 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE-EC
Confidence 35889999999863 34899999998 899999999999999999999999987521 012367774 67
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 86 g~~~~ 90 (267)
T PRK14237 86 GIDIN 90 (267)
T ss_pred CEEcc
Confidence 77764
No 214
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=7.7e-08 Score=94.94 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=57.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~----~G~I-~~~g~ 68 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTI----------KQGTMVTLLGPSGCGKTTVLRLVAGLEKPT----EGQI-FIDGE 68 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHHCCCCCC----ceEE-EECCE
Confidence 5788899999863 34799999998 899999999999999999999999998854 7888 48888
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 69 ~i~~ 72 (351)
T PRK11432 69 DVTH 72 (351)
T ss_pred ECCC
Confidence 8864
No 215
>PRK07261 topology modulation protein; Provisional
Probab=98.51 E-value=9.2e-07 Score=78.46 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=31.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.|+|+|++|||||||++.|++.++ .++|+.|.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~-~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN-CPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-CCeEecCCEE
Confidence 589999999999999999999998 8888899884
No 216
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.51 E-value=1.1e-07 Score=91.53 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=56.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.|.
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~----~G~i-~~~g~ 66 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTI----------ARGECFGLLGPNGAGKSTIARMLLGMISPD----RGKI-TVLGE 66 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence 4778899998864 34899999998 899999999999999999999999988754 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 67 ~~~ 69 (303)
T TIGR01288 67 PVP 69 (303)
T ss_pred ECc
Confidence 764
No 217
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1e-07 Score=89.87 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=57.7
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+.+.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .|++. +.|
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i~-~~g 68 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEI----------PDGHFTAIIGPNGCGKSTLLRTLSRLMTPA----HGHVW-LDG 68 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEE----------CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CcEEE-ECC
Confidence 56788999999974 34899999998 899999999999999999999999998754 68884 778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 69 ~~~~~ 73 (265)
T PRK10253 69 EHIQH 73 (265)
T ss_pred EEhhh
Confidence 77753
No 218
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.6e-07 Score=89.81 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=61.9
Q ss_pred CCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC--CC
Q 019312 9 PTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF--PS 86 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~--~~ 86 (343)
|++..-..+....+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++... |.
T Consensus 27 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~ 94 (286)
T PRK14275 27 PERKKVSGGGKPHVVAKNFSIYYGE--FEAVKKVNADI----------LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS 94 (286)
T ss_pred ccccccCCCCceEEEEeeeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 3455555556667899999999964 24899999998 8999999999999999999999999743 10
Q ss_pred ceecCCceEEEeccccc
Q 019312 87 EIINSDKMQVYKGLDIT 103 (343)
Q Consensus 87 eIIs~Ds~qvy~gl~I~ 103 (343)
..+.|++ .+.|.++.
T Consensus 95 -~~~~G~I-~~~g~~i~ 109 (286)
T PRK14275 95 -CHTTGAL-MFDGEDIY 109 (286)
T ss_pred -CCCceEE-EECCEEhh
Confidence 0126777 47777764
No 219
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.50 E-value=1.5e-07 Score=84.12 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=45.1
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.+++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++.
T Consensus 6 ~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~~~ 57 (190)
T TIGR01166 6 EVLKGLNFAA----------ERGEVLALLGANGAGKSTLLLHLNGLLRPQ----SGAV-LIDGEPLD 57 (190)
T ss_pred ceecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceeE-EECCEEcc
Confidence 3889999998 899999999999999999999999988754 6888 47777763
No 220
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.8e-07 Score=88.39 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=55.8
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++...... -.+.|++. +.|
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDI----------EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL-YEG 87 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE-ECC
Confidence 5889999999973 34899999998 8999999999999999999999999753000 01267774 777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 88 ~~i~~ 92 (268)
T PRK14248 88 LNILD 92 (268)
T ss_pred EEccc
Confidence 77754
No 221
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.6e-07 Score=89.10 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=57.5
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC--CCceecCCce
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF--PSEIINSDKM 94 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~--~~eIIs~Ds~ 94 (343)
|...-+++.++++.|+. ..+++++++++ .+|++++|+|+||||||||++.|++.+. +. ....|++
T Consensus 20 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i 86 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGE--DHALKNINLDI----------HENEVTAIIGPSGCGKSTYIKTLNRMVELVPS-VKTTGKI 86 (271)
T ss_pred CCceEEEEeeeEEEECC--cceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhccCCCC-CCCceeE
Confidence 33346889999999874 24899999998 8899999999999999999999999875 10 0126888
Q ss_pred EEEeccccc
Q 019312 95 QVYKGLDIT 103 (343)
Q Consensus 95 qvy~gl~I~ 103 (343)
. +.|.++.
T Consensus 87 ~-~~g~~~~ 94 (271)
T PRK14238 87 L-YRDQNIF 94 (271)
T ss_pred E-ECCEEcc
Confidence 4 7777764
No 222
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.50 E-value=1.4e-07 Score=87.47 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=54.3
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. ..++++++++ .+|++++|+||||||||||++.|++.+++. .|++ .+.|.++
T Consensus 2 ~i~~l~~~~~~~--~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i-~i~g~~~ 64 (237)
T TIGR00968 2 EIANISKRFGSF--QALDDVNLEV----------PTGSLVALLGPSGSGKSTLLRIIAGLEQPD----SGRI-RLNGQDA 64 (237)
T ss_pred EEEEEEEEECCe--eeeeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEEc
Confidence 567788888742 4899999998 899999999999999999999999988743 7888 4777776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (237)
T TIGR00968 65 TR 66 (237)
T ss_pred Cc
Confidence 53
No 223
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.50 E-value=1.2e-07 Score=93.66 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=58.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~----~G~I-~i~g~ 66 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSV----------KKGEFVCLLGPSGCGKTTLLRIIAGLERQT----AGTI-YQGGR 66 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHCCCCCC----ceEE-EECCE
Confidence 3778899998874 33789999998 889999999999999999999999998754 7888 47888
Q ss_pred cccCCC
Q 019312 101 DITTNK 106 (343)
Q Consensus 101 ~I~T~k 106 (343)
++....
T Consensus 67 ~~~~~~ 72 (353)
T TIGR03265 67 DITRLP 72 (353)
T ss_pred ECCCCC
Confidence 886543
No 224
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.50 E-value=1.4e-07 Score=86.37 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=55.0
Q ss_pred eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+.. ....++++++++ .+|++++|+||||||||||++.|++.+++. +|++ .+.|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i----------~~G~~~~I~G~nGsGKStLl~~l~G~~~~~----~G~i-~~~g 66 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEI----------NPGEIVILTGPSGSGKTTLLTLIGGLRSVQ----EGSL-KVLG 66 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECC
Confidence 4677888887643 245899999998 889999999999999999999999988754 6777 4677
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 67 ~~~~~ 71 (220)
T TIGR02982 67 QELYG 71 (220)
T ss_pred EEhHh
Confidence 76653
No 225
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.50 E-value=1.5e-07 Score=88.90 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=56.0
Q ss_pred ceeecccCCcCCcc-------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312 21 HYSSFYSPFLHPKR-------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK 93 (343)
Q Consensus 21 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds 93 (343)
-+++.++++.|... ...+++++++++ .+|++++|+||||||||||++.|++.++|. .|+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~----~G~ 69 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL----------REGQTLAIIGENGSGKSTLAKMLAGMIEPT----SGE 69 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEe----------cCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----CCE
Confidence 36788888887521 124899999998 899999999999999999999999998754 688
Q ss_pred eEEEeccccc
Q 019312 94 MQVYKGLDIT 103 (343)
Q Consensus 94 ~qvy~gl~I~ 103 (343)
+ .+.|.++.
T Consensus 70 i-~~~g~~~~ 78 (267)
T PRK15112 70 L-LIDDHPLH 78 (267)
T ss_pred E-EECCEECC
Confidence 8 47787764
No 226
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.3e-07 Score=88.62 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=54.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+++. .|++. +.|.+
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~~ 65 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSL----------PTGKITALIGPNGCGKSTLLKCFARLLTPQ----SGTVF-LGDKP 65 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----CcEEE-ECCEE
Confidence 567888888864 34899999998 899999999999999999999999988754 68884 77776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 66 ~~ 67 (255)
T PRK11231 66 IS 67 (255)
T ss_pred hH
Confidence 64
No 227
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=2e-07 Score=104.58 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.7
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|.++.|++.+++.+|.++-|.+|+++++++ .+++-|+|+|.||||||||+.+|.+...+. .|.+ .
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I----------~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~----~G~I-~ 1198 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTI----------KPGEKVGIVGRTGAGKSSLILALFRLVEPA----EGEI-L 1198 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCcchhcCceEEE----------cCCceEEEeCCCCCCHHHHHHHHHHhcCcc----CCeE-E
Confidence 788999999999999999999999999998 899999999999999999999999998754 6888 5
Q ss_pred EecccccC
Q 019312 97 YKGLDITT 104 (343)
Q Consensus 97 y~gl~I~T 104 (343)
.+|.||.+
T Consensus 1199 IDgvdI~~ 1206 (1381)
T KOG0054|consen 1199 IDGVDISK 1206 (1381)
T ss_pred EcCeeccc
Confidence 88888753
No 228
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.49 E-value=1.9e-07 Score=91.38 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=59.5
Q ss_pred ceeecccCCcCCc--ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPK--RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
-+++.+++..|+. +...+++++++++ .+|++++|+|+||||||||++.|++.+++.. +.+|++ .|.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~-~~sG~I-~~~ 79 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSL----------RAGETLGIVGESGSGKSQTAFALMGLLAANG-RIGGSA-TFN 79 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEE----------cCCCEEEEECCCCchHHHHHHHHHcCCCCCC-CCCeEE-EEC
Confidence 4678888888764 2345899999998 8999999999999999999999999987532 337888 589
Q ss_pred cccccCC
Q 019312 99 GLDITTN 105 (343)
Q Consensus 99 gl~I~T~ 105 (343)
|.++...
T Consensus 80 G~~i~~~ 86 (330)
T PRK09473 80 GREILNL 86 (330)
T ss_pred CEECCcC
Confidence 9888653
No 229
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.49 E-value=1.4e-07 Score=88.52 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=56.4
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g 66 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQA----------NAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGSI-VVNG 66 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECC
Confidence 34788999999874 24899999998 899999999999999999999999998754 6888 4777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 67 ~~~~ 70 (257)
T PRK10619 67 QTIN 70 (257)
T ss_pred EEcc
Confidence 7664
No 230
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.49 E-value=1.9e-07 Score=90.00 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=56.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.+
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i----------~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~----~G~i~-i~g~~ 65 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEA----------QKGRIVGFLGPNGAGKSTTMKIITGYLPPD----SGSVQ-VCGED 65 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEE----------eCCeEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEE
Confidence 678888888863 34899999998 899999999999999999999999998754 78884 77887
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (301)
T TIGR03522 66 VLQ 68 (301)
T ss_pred ccc
Confidence 754
No 231
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.4e-07 Score=88.03 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=54.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+... -.+.|++. +.|
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g 72 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEF----------EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL-LDG 72 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEE----------eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE-ECC
Confidence 4788999999864 34899999998 8999999999999999999999999753100 01367774 777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 73 ~~i~ 76 (253)
T PRK14242 73 ENIY 76 (253)
T ss_pred EEcc
Confidence 7764
No 232
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=3.5e-07 Score=80.60 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=34.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
+|+|.||.||||||+++.||+.++ .++||+|.+ |+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~i--FR~~ 38 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTI--FREM 38 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-CceeeccHH--HHHH
Confidence 688999999999999999999999 999999988 7655
No 233
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=1.7e-07 Score=88.78 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=49.4
Q ss_pred ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
+++..|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++..
T Consensus 29 ~~~~~~~~--~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~----~G~i-~i~g~~~~~ 90 (269)
T cd03294 29 EILKKTGQ--TVGVNDVSLDV----------REGEIFVIMGLSGSGKSTLLRCINRLIEPT----SGKV-LIDGQDIAA 90 (269)
T ss_pred hhhhhcCC--ceEeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EECCEEccc
Confidence 45555442 23789999998 899999999999999999999999998754 6888 477777643
No 234
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2.2e-07 Score=87.13 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=55.5
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
.+++.++++.|+.. .+++++++++ .+|++++|+||||||||||++.|++...+.+ -...|++. +.|
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~-~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNI----------EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL-LDG 70 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE-ECC
Confidence 46788999998743 4899999998 8899999999999999999999999875210 01267884 777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 71 ~~~~ 74 (258)
T PRK14241 71 EDLY 74 (258)
T ss_pred Eecc
Confidence 7764
No 235
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.49 E-value=1.3e-07 Score=88.53 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=55.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+++. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~ 64 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTA----------PPGSLTGLLGPNGSGKSTLLRLLAGALRPD----AGTV-DLAGVD 64 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CCEE-EECCEE
Confidence 467788888864 34899999998 899999999999999999999999998754 6888 477777
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 65 ~~~ 67 (256)
T TIGR03873 65 LHG 67 (256)
T ss_pred ccc
Confidence 653
No 236
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=1.8e-07 Score=103.20 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=62.3
Q ss_pred CCccceeecccCCcCCccccc-ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRS-RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
...+.|++.+|+|.||.++.. +++++++++ ++|+-++|+|||||||||+...|-+.++|. .|.+
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i----------~~GqTvALVG~SGsGKSTvI~LLeRfYdp~----~G~V- 1047 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSI----------RAGQTVALVGPSGSGKSTVISLLERFYDPD----AGKV- 1047 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEe----------cCCCEEEEECCCCCCHHHHHHHHHHhcCCC----CCeE-
Confidence 456889999999999976633 899999998 999999999999999999999999999865 6777
Q ss_pred EEecccccCC
Q 019312 96 VYKGLDITTN 105 (343)
Q Consensus 96 vy~gl~I~T~ 105 (343)
...|.||.+-
T Consensus 1048 ~IDg~dik~l 1057 (1228)
T KOG0055|consen 1048 KIDGVDIKDL 1057 (1228)
T ss_pred EECCcccccC
Confidence 3667766543
No 237
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.49 E-value=1.7e-07 Score=107.39 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=51.4
Q ss_pred ccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 19 QQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
...+++.+|+|.||.++ ..+|+++++++ ++|+.++|+||||||||||+..|.+.++|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i----------~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSC----------DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEE----------cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 36799999999999643 24899999998 99999999999999999999999999885
No 238
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.49 E-value=1.9e-07 Score=85.24 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=53.2
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+-++.|.|+...+ +++++++++ .+|++++|+||||||||||++.|++..++. .|++. +.|.++.
T Consensus 3 ~~~~~~~~~~~~~-il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i~-~~g~~~~ 66 (218)
T cd03290 3 VTNGYFSWGSGLA-TLSNINIRI----------PTGQLTMIVGQVGCGKSSLLLAILGEMQTL----EGKVH-WSNKNES 66 (218)
T ss_pred eeeeEEecCCCCc-ceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CCeEE-ECCcccc
Confidence 4567788876643 899999998 889999999999999999999999998744 68884 6676654
Q ss_pred C
Q 019312 104 T 104 (343)
Q Consensus 104 T 104 (343)
.
T Consensus 67 ~ 67 (218)
T cd03290 67 E 67 (218)
T ss_pred c
Confidence 3
No 239
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.4e-07 Score=93.98 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=58.7
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~----~G~I-~i~ 79 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTI----------YKGEIFALLGASGCGKSTLLRMLAGFEQPT----AGQI-MLD 79 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EEC
Confidence 446889999998864 24789999998 889999999999999999999999998754 6888 478
Q ss_pred cccccCC
Q 019312 99 GLDITTN 105 (343)
Q Consensus 99 gl~I~T~ 105 (343)
|.++...
T Consensus 80 g~~i~~~ 86 (377)
T PRK11607 80 GVDLSHV 86 (377)
T ss_pred CEECCCC
Confidence 8887543
No 240
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.5e-07 Score=84.57 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=54.0
Q ss_pred ceeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
.+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++..... .+.|++ .+.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~~~G~i-~~~ 69 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYV----------KPGTLTALMGESGAGKTTLLDVLAGRKTAG--VITGEI-LIN 69 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEE-EEC
Confidence 36788899998752 134899999998 889999999999999999999999864200 126777 467
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 70 g~~~~ 74 (192)
T cd03232 70 GRPLD 74 (192)
T ss_pred CEehH
Confidence 76663
No 241
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.48 E-value=2.1e-07 Score=97.44 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=59.8
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+... .+++++++++ ++|+.++|+||||||||||++.|++..+|. .|++ .+.
T Consensus 332 ~~~i~~~~v~~~y~~~~-~~l~~i~~~i----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~i-~~~ 395 (585)
T TIGR01192 332 KGAVEFRHITFEFANSS-QGVFDVSFEA----------KAGQTVAIVGPTGAGKTTLINLLQRVYDPT----VGQI-LID 395 (585)
T ss_pred CCeEEEEEEEEECCCCC-ccccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHccCCCCC----CCEE-EEC
Confidence 35699999999998643 3799999998 899999999999999999999999998865 6888 477
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 396 g~~~~~ 401 (585)
T TIGR01192 396 GIDINT 401 (585)
T ss_pred CEEhhh
Confidence 877653
No 242
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.47 E-value=1.6e-07 Score=87.48 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=54.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEecc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKGL 100 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~gl 100 (343)
+++.++++.|+.. ..++++++++ .+|++++|+||||||||||++.|++..+|.+ -...|++. +.|.
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~-~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDI----------PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL-FDGQ 68 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEE-ECCE
Confidence 4678888888643 3899999998 8999999999999999999999999886320 11257774 7777
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 69 ~~~~ 72 (247)
T TIGR00972 69 DIYD 72 (247)
T ss_pred Eccc
Confidence 7653
No 243
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.47 E-value=1.8e-07 Score=92.29 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.+
T Consensus 3 L~i~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~----~G~I-~i~g~~ 65 (353)
T PRK10851 3 IEIANIKKSFGR--TQVLNDISLDI----------PSGQMVALLGPSGSGKTTLLRIIAGLEHQT----SGHI-RFHGTD 65 (353)
T ss_pred EEEEEEEEEeCC--eEEEEEeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence 567788888864 34899999998 899999999999999999999999998754 7888 488888
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 66 i~~~ 69 (353)
T PRK10851 66 VSRL 69 (353)
T ss_pred CCCC
Confidence 8643
No 244
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.47 E-value=2.1e-07 Score=84.84 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=51.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. .+.++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~----~~~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 62 (213)
T TIGR01277 2 ALDKVRYEYEH----LPMEFDLNV----------ADGEIVAIMGPSGAGKSTLLNLIAGFIEPA----SGSI-KVNDQSH 62 (213)
T ss_pred eEEeeeEEeCC----cceeeEEEE----------eCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECCEEc
Confidence 56788888862 356888887 899999999999999999999999998754 6888 4777776
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
.+
T Consensus 63 ~~ 64 (213)
T TIGR01277 63 TG 64 (213)
T ss_pred cc
Confidence 53
No 245
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.8e-07 Score=92.91 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=56.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i----------~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~----~G~I-~~~g~ 65 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDI----------HEGEFVVFVGPSGCGKSTLLRMIAGLEDIT----SGDL-FIGEK 65 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence 4678889988864 24899999998 889999999999999999999999998754 6888 47888
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 66 ~i~~ 69 (369)
T PRK11000 66 RMND 69 (369)
T ss_pred ECCC
Confidence 8753
No 246
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.9e-07 Score=86.29 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=54.4
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
.+.++++.|+.. ..++++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~--~il~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~----~G~i-~~~g~~~ 64 (232)
T cd03300 2 ELENVSKFYGGF--VALDGVSLDI----------KEGEFFTLLGPSGCGKTTLLRLIAGFETPT----SGEI-LLDGKDI 64 (232)
T ss_pred EEEeEEEEeCCe--eeeccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEEc
Confidence 567788888643 4899999998 889999999999999999999999998753 6888 4778777
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 65 ~~ 66 (232)
T cd03300 65 TN 66 (232)
T ss_pred Cc
Confidence 54
No 247
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.8e-07 Score=87.36 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g 99 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .-...|++ .+.|
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKI----------PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFG 70 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECC
Confidence 4678899998864 34899999998 899999999999999999999999987631 00125777 3677
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 71 ~~i~ 74 (253)
T PRK14267 71 RNIY 74 (253)
T ss_pred EEcc
Confidence 7764
No 248
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.47 E-value=1.7e-07 Score=85.87 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=52.6
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|.++
T Consensus 2 ~l~~v~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~~~~~ 64 (223)
T TIGR03740 2 ETKNLSKRFGK--QTAVNNISLTV----------PKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEII-FDGHPW 64 (223)
T ss_pred EEEeEEEEECC--EEEEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEec
Confidence 56778887763 34899999998 899999999999999999999999998754 68884 666655
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (223)
T TIGR03740 65 T 65 (223)
T ss_pred c
Confidence 3
No 249
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.1e-07 Score=87.47 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~q 95 (343)
.....+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .-...|++.
T Consensus 8 ~~~~~l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 75 (258)
T PRK14268 8 VAQPQIKVENLNLWYGE--KQALKNVSMQI----------PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75 (258)
T ss_pred ccceeEEEeeeEEEeCC--eeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE
Confidence 33456889999998863 34899999998 899999999999999999999999987521 001268884
Q ss_pred EEeccccc
Q 019312 96 VYKGLDIT 103 (343)
Q Consensus 96 vy~gl~I~ 103 (343)
+.|.++.
T Consensus 76 -~~g~~i~ 82 (258)
T PRK14268 76 -IEGEDIY 82 (258)
T ss_pred -ECCEEcc
Confidence 7777764
No 250
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.7e-07 Score=86.18 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~ 98 (343)
..++..++.+.|-. ..+|+++++.+ +++++.+|+||||||||||++++.+.....+ +=-.|.+ .|.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i----------~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDI----------PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLD 72 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceec----------cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EEC
Confidence 34566777777773 44799999997 8899999999999999999999999865221 1114666 588
Q ss_pred cccccCCCCCc
Q 019312 99 GLDITTNKIPS 109 (343)
Q Consensus 99 gl~I~T~kp~~ 109 (343)
|.+|-..+...
T Consensus 73 g~ni~~~~~d~ 83 (253)
T COG1117 73 GKNIYDPKVDV 83 (253)
T ss_pred CeeccCCCCCH
Confidence 88886654443
No 251
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.3e-07 Score=90.69 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=57.5
Q ss_pred ceeecccCCcCCcc--------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312 21 HYSSFYSPFLHPKR--------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92 (343)
Q Consensus 21 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D 92 (343)
-+++.+++..|+.. ...+++++++++ .+|++++|+|+||||||||++.|++.+++. .|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~----~G 70 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL----------ERGKTLAVVGESGCGKSTLARLLTMIETPT----GG 70 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE----------CCCCEEEEECCCCCcHHHHHHHHHcCCCCC----Cc
Confidence 46778888777642 234899999998 899999999999999999999999998753 78
Q ss_pred ceEEEecccccCC
Q 019312 93 KMQVYKGLDITTN 105 (343)
Q Consensus 93 s~qvy~gl~I~T~ 105 (343)
++ .+.|.++...
T Consensus 71 ~i-~~~g~~l~~~ 82 (327)
T PRK11308 71 EL-YYQGQDLLKA 82 (327)
T ss_pred EE-EECCEEcCcC
Confidence 88 4888887643
No 252
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.9e-07 Score=87.05 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=55.5
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g 99 (343)
.+++.++++.|+.. .+++++++++ .+|++++|+||||||||||++.|++..++. .....|++ .+.|
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYGDF--QALKKINLDI----------EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDG 69 (250)
T ss_pred eEEEEEEEEEECCc--eeeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECC
Confidence 57888999998742 4899999998 899999999999999999999999976421 11236888 4777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 70 ~~~~ 73 (250)
T PRK14240 70 QDIY 73 (250)
T ss_pred EEcc
Confidence 7664
No 253
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2e-07 Score=87.83 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=57.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~g 99 (343)
.+++.++++.|.. +.+++++++++ .+|++++|+||||||||||++.|++..++ ++|...|++ .+.|
T Consensus 7 ~l~~~nl~~~~~~--~~il~~is~~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i-~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYDT--QKILEGVSMEI----------YQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV-EFFN 73 (261)
T ss_pred eEEEeeEEEEeCC--eeEeeceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE-EECC
Confidence 5889999999863 34899999998 89999999999999999999999999874 244556777 4667
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 74 ~~i~ 77 (261)
T PRK14258 74 QNIY 77 (261)
T ss_pred EEhh
Confidence 7663
No 254
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.8e-07 Score=87.18 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=54.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++.. ..+.|.+ .+.|
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKI----------FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI-YFKG 69 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEee----------cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECC
Confidence 3678899998863 34899999998 8999999999999999999999999875210 0126777 4677
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 70 ~~~~ 73 (250)
T PRK14262 70 QDIY 73 (250)
T ss_pred EEcc
Confidence 7664
No 255
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.46 E-value=2.8e-07 Score=81.47 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++++|+||+||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g-~~~~~~g~~ 37 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG-FTHLSTGDL 37 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHH
Confidence 46999999999999999999999998 888888876
No 256
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.9e-07 Score=86.97 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=54.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEecc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKGL 100 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~gl 100 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..++. +....|++ .+.|.
T Consensus 4 l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFGQ--VEVLDGVNLEI----------PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQ 70 (250)
T ss_pred EEEEeeEEEECC--eeeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCE
Confidence 678888888864 24899999998 899999999999999999999999987521 01125777 47777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 71 ~i~ 73 (250)
T PRK14247 71 DIF 73 (250)
T ss_pred ECC
Confidence 764
No 257
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.46 E-value=1.8e-07 Score=93.96 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=57.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|.+ .+.|.
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i----------~~Geiv~liGpNGaGKSTLLk~LaGll~p~----sG~I-~l~G~ 65 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSV----------REGSLVGLVGPNGAGKTTLLRAINGTLTPT----AGTV-LVAGD 65 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEE----------CCCCEEEEECCCCchHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence 3678899999874 34899999998 899999999999999999999999998754 7888 47788
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 66 ~i~~ 69 (402)
T PRK09536 66 DVEA 69 (402)
T ss_pred EcCc
Confidence 7754
No 258
>PLN02199 shikimate kinase
Probab=98.46 E-value=2.7e-07 Score=88.81 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
++..|+|+|.+||||||+++.||+.++ ..+|+.|.+ .... ..+. .+....+ .+....|++
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg-~~fIDtD~l--Ie~~-----------~~G~-----sI~eIf~-~~GE~~FR~ 160 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLG-YTFFDCDTL--IEQA-----------MNGT-----SVAEIFV-HHGENFFRG 160 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-CCEEehHHH--HHHH-----------hcCC-----CHHHHHH-HhCHHHHHH
Confidence 377899999999999999999999998 889999976 1110 0010 1111222 567788999
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK 213 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 213 (343)
...+++.++.......|-+||.... +|....+ +. ...++||+.+.+.|.+||..
T Consensus 161 ~E~e~L~~L~~~~~~VIStGGG~V~---------~~~n~~~------------L~-~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 161 KETDALKKLSSRYQVVVSTGGGAVI---------RPINWKY------------MH-KGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred HHHHHHHHHHhcCCEEEECCCcccC---------CHHHHHH------------Hh-CCeEEEEECCHHHHHHHHhh
Confidence 9999999987766666667775321 2211000 11 23579999999999999974
No 259
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.1e-07 Score=87.40 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=55.4
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
-+.+.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++...+.+ .-..|++. +.|
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~-~~g 78 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSI----------PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN-YNG 78 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE-ECC
Confidence 4788999999874 34899999998 8899999999999999999999999875211 01257774 777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 79 ~~~~ 82 (259)
T PRK14274 79 SNIL 82 (259)
T ss_pred EEcc
Confidence 7664
No 260
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=2.2e-07 Score=86.15 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=53.5
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|.. + .++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~--~-~l~~is~~i----------~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~----~G~v-~i~g~~~ 63 (235)
T cd03299 2 KVENLSKDWKE--F-KLKNVSLEV----------ERGDYFVILGPTGSGKSVLLETIAGFIKPD----SGKI-LLNGKDI 63 (235)
T ss_pred eeEeEEEEeCC--c-eeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----ceEE-EECCEEc
Confidence 56777787763 2 699999998 889999999999999999999999988754 6888 4788777
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 64 ~~ 65 (235)
T cd03299 64 TN 65 (235)
T ss_pred Cc
Confidence 54
No 261
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.2e-07 Score=86.55 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=54.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+. +..++++++++ .+|++++|+||||||||||++.|++..++. ..+.|++ .+.|.+
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~G~i-~~~g~~ 68 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQI----------EQNKITALIGASGCGKSTFLRCFNRMNDKI-AKIDGLV-EIEGKD 68 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCCceEE-EECCEe
Confidence 467888888873 34899999998 889999999999999999999999986410 1126888 477877
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 69 i~~ 71 (246)
T PRK14269 69 VKN 71 (246)
T ss_pred ccc
Confidence 753
No 262
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.2e-07 Score=86.66 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=55.5
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++...+.+ ....|++ .+.|
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDF----------EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEG 70 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECC
Confidence 4788999999864 34899999998 8899999999999999999999999874100 0126777 4777
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 71 ~~~~ 74 (251)
T PRK14251 71 QNIY 74 (251)
T ss_pred EEcc
Confidence 7764
No 263
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.45 E-value=1.6e-06 Score=89.39 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=42.8
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+.|+.+. .++.+|+|.||+||||||+++.|++.++ ..+++.|.+ |+.+
T Consensus 274 LIDN~~~~-----------~~~~ii~i~G~sgsGKst~a~~la~~l~-~~~~d~g~~--YR~~ 322 (512)
T PRK13477 274 LIDNVFLM-----------KRQPIIAIDGPAGAGKSTVTRAVAKKLG-LLYLDTGAM--YRAV 322 (512)
T ss_pred EEeeeEec-----------cCCcEEEEECCCCCCHHHHHHHHHHHcC-CeEecCCce--ehHH
Confidence 55677665 3568999999999999999999999998 899999999 8875
No 264
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.45 E-value=2.1e-07 Score=80.20 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=49.2
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
++.++++.|+.. ..++++++.. .+|++++|+||||||||||++.|++..++. .|++. +.|
T Consensus 2 ~~~~l~~~~~~~--~~l~~~~~~~----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~-~~~ 61 (144)
T cd03221 2 ELENLSKTYGGK--LLLKDISLTI----------NPGDRIGLVGRNGAGKSTLLKLIAGELEPD----EGIVT-WGS 61 (144)
T ss_pred EEEEEEEEECCc--eEEEeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----ceEEE-ECC
Confidence 566788877643 3899999998 899999999999999999999999998753 67763 444
No 265
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.5e-07 Score=86.42 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=55.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
.+++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++...+.. .-..|++ .+.|
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPI----------YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDG 70 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECC
Confidence 4678889988863 34899999998 8999999999999999999999999865310 0125777 4777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 71 ~~i~~ 75 (251)
T PRK14270 71 KNIYD 75 (251)
T ss_pred Eeccc
Confidence 77753
No 266
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.44 E-value=2.6e-07 Score=90.51 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=56.5
Q ss_pred eeecccCCcCCcc-----------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312 22 YSSFYSPFLHPKR-----------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN 90 (343)
Q Consensus 22 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs 90 (343)
+++.+++..|+.. ...+++++++++ .+|++++|+|+||||||||++.|++.+.+.
T Consensus 9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---- 74 (331)
T PRK15079 9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL----------YEGETLGVVGESGCGKSTFARAIIGLVKAT---- 74 (331)
T ss_pred EEEeCeEEEECCCCccccccccCCceEEEeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHCCCCCC----
Confidence 5677777766531 234889999998 899999999999999999999999998753
Q ss_pred CCceEEEecccccCC
Q 019312 91 SDKMQVYKGLDITTN 105 (343)
Q Consensus 91 ~Ds~qvy~gl~I~T~ 105 (343)
+|++ .|.|.++...
T Consensus 75 ~G~I-~~~G~~i~~~ 88 (331)
T PRK15079 75 DGEV-AWLGKDLLGM 88 (331)
T ss_pred CcEE-EECCEECCcC
Confidence 7998 5889888643
No 267
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.3e-07 Score=87.16 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=56.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g 99 (343)
.+++.++++.|.. ..+++++++++ .+|++++|+|+||||||||++.|++.+++. ..+..|++. +.|
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~-~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDI----------YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD-FFG 73 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE-ECC
Confidence 5788899998863 34899999998 899999999999999999999999987631 122367774 677
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 74 ~~i~ 77 (259)
T PRK14260 74 QNIY 77 (259)
T ss_pred Eecc
Confidence 7664
No 268
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.44 E-value=1.9e-07 Score=86.76 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=53.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.. ++. .|++ .+.|
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~----~G~i-~~~g 64 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEV----------RPGEVHAIMGPNGSGKSTLSATLAGREDYEVT----GGTV-EFKG 64 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHcCCccCCCC----ceEE-EECC
Confidence 467888888874 23899999998 899999999999999999999999984 333 6777 4777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 65 ~~~~~ 69 (248)
T PRK09580 65 KDLLE 69 (248)
T ss_pred Ccccc
Confidence 76643
No 269
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.44 E-value=2.3e-07 Score=86.51 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=54.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~ 98 (343)
-+++.++++.|+.. .+++++++++ .+|++++|+||||||||||++.|++.. ++. .|++ .+.
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~----~G~i-~~~ 69 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSI----------NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL----EGDI-LFK 69 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC----CceE-EEC
Confidence 36788999988742 4899999998 899999999999999999999999962 322 6888 467
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 70 g~~~~~ 75 (252)
T CHL00131 70 GESILD 75 (252)
T ss_pred CEEccc
Confidence 776643
No 270
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.44 E-value=2.1e-07 Score=92.71 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=57.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...+. .|++ .+.|.
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~----~G~I-~~~g~ 76 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTI----------NNGEFLTLLGPSGCGKTTVLRLIAGFETPD----SGRI-MLDGQ 76 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEE----------eCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence 3788899998864 23789999998 899999999999999999999999998854 7888 48888
Q ss_pred cccCC
Q 019312 101 DITTN 105 (343)
Q Consensus 101 ~I~T~ 105 (343)
++...
T Consensus 77 ~i~~~ 81 (375)
T PRK09452 77 DITHV 81 (375)
T ss_pred ECCCC
Confidence 88643
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.44 E-value=2.3e-07 Score=83.90 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=51.6
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+. ...++++++++ .+|++++|+|+||||||||++.|++..++. .|++ .+.|.++
T Consensus 2 ~i~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 64 (201)
T cd03231 2 EADELTCERDG--RALFSGLSFTL----------AAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV-LLNGGPL 64 (201)
T ss_pred EEEEEEEEeCC--ceeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEec
Confidence 45677777753 24789999998 899999999999999999999999998754 6777 3666665
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 65 ~ 65 (201)
T cd03231 65 D 65 (201)
T ss_pred c
Confidence 3
No 272
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.44 E-value=7.9e-07 Score=78.53 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+|++||||||+++.|++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999885
No 273
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.5e-07 Score=86.44 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=55.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~g 99 (343)
.+++.++++.|+. ...|+++++++ .+|++++|+||||||||||++.|++..++.+- ...|++ .+.|
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISI----------PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNG 72 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEE----------CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECC
Confidence 5788999999863 34899999998 89999999999999999999999987642110 125777 4777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++.+
T Consensus 73 ~~~~~ 77 (253)
T PRK14261 73 ENIMD 77 (253)
T ss_pred EEccc
Confidence 77653
No 274
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.43 E-value=2.5e-06 Score=75.53 Aligned_cols=130 Identities=10% Similarity=0.016 Sum_probs=69.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+++|+|.|++||||||+++.|++.++. .-.++.|.+ +.-++- .......++...-. .....+ .+ ......
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~--~~~~~~----~~~~~~~~~~~~~~-~~~~~~-~~-~~~~y~ 72 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF--IEALPL----KCQDAEGGIEFDGD-GGVSPG-PE-FRLLEG 72 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH--HHhcCh----hhcccccccccCcc-CCcccc-hH-HHHHHH
Confidence 679999999999999999999998761 222355554 111110 00000011110000 000001 01 112333
Q ss_pred hhhHHHHHHHhcCCeeEEEcCch--hhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSN--SFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV 215 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~--lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv 215 (343)
.....+..+.+.|...|+-.... ..++..+. .+ ...++.++++.++.++|.+|+.+|-
T Consensus 73 ~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~-----------------~~---~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 73 AWYEAVAAMARAGANVIADDVFLGRAALQDCWR-----------------SF---VGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHH-----------------Hh---cCCCEEEEEEECCHHHHHHHHHhcC
Confidence 34455677778888755543221 11111110 00 1235778999999999999999997
Q ss_pred HH
Q 019312 216 DD 217 (343)
Q Consensus 216 ~~ 217 (343)
+.
T Consensus 133 ~~ 134 (175)
T cd00227 133 DR 134 (175)
T ss_pred Cc
Confidence 55
No 275
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.43 E-value=2.4e-07 Score=87.07 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=55.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|.. -.+|++ .+.|.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~-~~~G~i-~~~g~ 69 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNI----------HHGEMVALLGPSGSGKSTLLRHLSGLITGDK-SAGSHI-ELLGR 69 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEE----------cCCcEEEEECCCCCCHHHHHHHHhccCCCCC-CCceEE-EECCE
Confidence 4678899998863 34899999998 8999999999999999999999999886420 013777 47777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 70 ~~~ 72 (262)
T PRK09984 70 TVQ 72 (262)
T ss_pred ecc
Confidence 664
No 276
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=2.5e-07 Score=86.52 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.+++.. ....|++. +.|
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g 73 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKI----------LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI-YEG 73 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEE----------cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE-ECC
Confidence 4789999999864 34899999998 8999999999999999999999999886310 01257774 677
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 74 ~~i~ 77 (254)
T PRK14273 74 KNIY 77 (254)
T ss_pred Eecc
Confidence 7664
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.43 E-value=2.4e-07 Score=83.82 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=53.6
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEecc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKGL 100 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~gl 100 (343)
++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.. .|. .|++. +.|.
T Consensus 2 ~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~----~G~i~-~~g~ 64 (200)
T cd03217 2 EIKDLHVSVGG--KEILKGVNLTI----------KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT----EGEIL-FKGE 64 (200)
T ss_pred eEEEEEEEeCC--EEeeeccceEE----------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC----ccEEE-ECCE
Confidence 56788888863 34899999998 899999999999999999999999984 333 68884 7787
Q ss_pred cccCC
Q 019312 101 DITTN 105 (343)
Q Consensus 101 ~I~T~ 105 (343)
++...
T Consensus 65 ~~~~~ 69 (200)
T cd03217 65 DITDL 69 (200)
T ss_pred ECCcC
Confidence 77643
No 278
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=2.6e-07 Score=86.08 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=54.7
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g 99 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..++. .....|++. +.|
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g 69 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPI----------PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT-MDG 69 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEe----------cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECC
Confidence 3678899998873 34899999998 899999999999999999999999987631 001257773 667
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 70 ~~~~ 73 (249)
T PRK14253 70 EDIY 73 (249)
T ss_pred EEcc
Confidence 6664
No 279
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.43 E-value=4.6e-07 Score=91.98 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=62.8
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
++.++.+++++.-|..+...++++++++ .+|..++|+||||||||||++.|.+..+|. .|++. .+
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l----------~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~----~G~VR-LD 396 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGISFAL----------QAGEALGIIGPSGSGKSTLARLLVGIWPPT----SGSVR-LD 396 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecceeEe----------cCCceEEEECCCCccHHHHHHHHHcccccC----CCcEE-ec
Confidence 4888999999988888878999999998 899999999999999999999999999876 78884 77
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++-
T Consensus 397 ga~l~ 401 (580)
T COG4618 397 GADLR 401 (580)
T ss_pred chhhh
Confidence 87774
No 280
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.43 E-value=2.9e-07 Score=84.35 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=49.5
Q ss_pred eeecccCCcCCcc-----cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 22 YSSFYSPFLHPKR-----RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 22 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+++.++++.|+.. ....++++++++ .+|++++|+||||||||||++.|++.+++. .|++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i~ 66 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTV----------NAGECVALSGPSGAGKSTLLKSLYANYLPD----SGRIL 66 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCeEE
Confidence 4677888888632 134899999998 899999999999999999999999998754 67774
No 281
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=2.9e-07 Score=83.53 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=49.3
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|+.. . .++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++
T Consensus 2 ~~~~l~~~~~~~-~---~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~----~G~i-~~~g~~~ 62 (211)
T cd03298 2 RLDKIRFSYGEQ-P---MHFDLTF----------AQGEITAIVGPSGSGKSTLLNLIAGFETPQ----SGRV-LINGVDV 62 (211)
T ss_pred EEEeEEEEeCCE-e---cceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEEc
Confidence 567778877632 2 3888887 889999999999999999999999998754 6777 4667666
Q ss_pred c
Q 019312 103 T 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 63 ~ 63 (211)
T cd03298 63 T 63 (211)
T ss_pred C
Confidence 4
No 282
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.42 E-value=2.5e-07 Score=91.69 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=57.6
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC--CceEEE
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS--DKMQVY 97 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~--Ds~qvy 97 (343)
.++++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. . |++ .+
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~----~~~G~i-~~ 66 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--NTVLDDLSLEI----------EAGELLALIGKSGCGKTTLLRAIAGFVKAA----GLTGRI-AI 66 (362)
T ss_pred eEEEEEEEEEEECC--eEEEeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCCEEE-EE
Confidence 35788899999874 24899999998 889999999999999999999999988754 6 888 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 67 ~g~~~~~ 73 (362)
T TIGR03258 67 ADRDLTH 73 (362)
T ss_pred CCEECCC
Confidence 8888753
No 283
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.42 E-value=2.6e-07 Score=86.80 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=50.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++.
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i----------~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~----~G~i~ 62 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLEL----------KPGKILTLLGPNGAGKSTLVRVVLGLVAPD----EGVIK 62 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE
Confidence 3678899998874 23899999998 899999999999999999999999998754 56663
No 284
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.42 E-value=2.6e-07 Score=87.88 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=54.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC----ceecCCceEEE
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS----EIINSDKMQVY 97 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~----eIIs~Ds~qvy 97 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.+++. ..+..|++. +
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~-~ 68 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRI----------EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT-L 68 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE-E
Confidence 456778877753 24899999998 899999999999999999999999988642 122257784 7
Q ss_pred eccccc
Q 019312 98 KGLDIT 103 (343)
Q Consensus 98 ~gl~I~ 103 (343)
.|.++.
T Consensus 69 ~g~~~~ 74 (272)
T PRK13547 69 NGEPLA 74 (272)
T ss_pred CCEEcc
Confidence 777664
No 285
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.4e-07 Score=89.15 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=58.8
Q ss_pred eeecccCCcCCcc---cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKR---RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
|+|.+|+..|+.. ...+++++++++ ++|.+++|+|.||+|||||.+++...-.|. +|++ ++.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I----------~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt----sG~v-~v~ 66 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEI----------PKGEIFGIIGYSGAGKSTLLRLINLLERPT----SGSV-FVD 66 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEE----------cCCcEEEEEcCCCCcHHHHHHHHhccCCCC----CceE-EEc
Confidence 5788888888763 345899999998 999999999999999999999999987765 7999 688
Q ss_pred cccccCC
Q 019312 99 GLDITTN 105 (343)
Q Consensus 99 gl~I~T~ 105 (343)
|.+++.-
T Consensus 67 G~di~~l 73 (339)
T COG1135 67 GQDLTAL 73 (339)
T ss_pred CEecccC
Confidence 9888653
No 286
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.41 E-value=4.2e-07 Score=87.79 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=56.2
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC-CCceecCCceEEEeccccc
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF-PSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~-~~eIIs~Ds~qvy~gl~I~ 103 (343)
.+|+|.-..+.-.+++++++++ .+|++++|+|-||||||++++.+.+.++ +.-.|..|++ .|+|.++.
T Consensus 7 L~v~f~~~~g~v~av~~vs~~i----------~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~l~ 75 (316)
T COG0444 7 LSVSFPTDAGVVKAVDGVSFEL----------KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLL 75 (316)
T ss_pred eEEEEecCCccEEEEeceeEEE----------cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE-EECCcccc
Confidence 3445544444445889999998 9999999999999999999999999997 3345556788 59999987
Q ss_pred CCC
Q 019312 104 TNK 106 (343)
Q Consensus 104 T~k 106 (343)
...
T Consensus 76 ~l~ 78 (316)
T COG0444 76 SLS 78 (316)
T ss_pred cCC
Confidence 554
No 287
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=3.5e-07 Score=84.38 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=50.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.. ..++++++ .+|++++|+||||||||||++.|++..++. .|++ .+.|.+
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~ 62 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTV----------ERGERVAILGPSGAGKSTLLNLIAGFLTPA----SGSL-TLNGQD 62 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCee
Confidence 4678888888632 23788887 889999999999999999999999998754 6888 477776
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 63 ~~ 64 (232)
T PRK10771 63 HT 64 (232)
T ss_pred cC
Confidence 64
No 288
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=9.5e-08 Score=89.08 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=62.7
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccC
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~ 116 (343)
.+++++++++ .++++++|+||||+||||+...+.+.+.|. .|.+ .|+|.+|+..+|..--+.|+-
T Consensus 18 ~Al~~Vsl~v----------~~Gei~~LIGPNGAGKTTlfNlitG~~~P~----~G~v-~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 18 TAVNDVSLEV----------RPGEIVGLIGPNGAGKTTLFNLITGFYKPS----SGTV-IFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred EEEeceeEEE----------cCCeEEEEECCCCCCceeeeeeecccccCC----CceE-EECCcccCCCCHHHHHhccce
Confidence 4688999998 899999999999999999999999999975 7888 699999987776554455664
Q ss_pred ccccccccCCCcccChhhhh
Q 019312 117 HHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 117 h~li~~~~~~~~~~s~~~f~ 136 (343)
.-| ++..+.. ..|+-+-.
T Consensus 83 RTF-Q~~rlF~-~lTVlENv 100 (250)
T COG0411 83 RTF-QITRLFP-GLTVLENV 100 (250)
T ss_pred eec-ccccccC-CCcHHHHH
Confidence 322 2223333 45555443
No 289
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=3.3e-07 Score=85.55 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=53.8
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.+++.. -...|.+ .+.|
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDF----------PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDN 70 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECC
Confidence 5788899998863 34899999998 8899999999999999999999999887420 0013666 3566
Q ss_pred ccc
Q 019312 100 LDI 102 (343)
Q Consensus 100 l~I 102 (343)
.++
T Consensus 71 ~~~ 73 (251)
T PRK14249 71 ENI 73 (251)
T ss_pred EEc
Confidence 655
No 290
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=3.1e-07 Score=85.78 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=54.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~g 99 (343)
+.++.++++.|+. ...++++++++ .+|++++|+||||||||||++.|++...+.+. ...|++ .+.|
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDI----------YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDG 71 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE-EECC
Confidence 4568888888863 34899999998 89999999999999999999999998641010 126777 4677
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 72 ~~i~ 75 (251)
T PRK14244 72 IDVY 75 (251)
T ss_pred EehH
Confidence 6664
No 291
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.40 E-value=3.2e-07 Score=93.82 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=53.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|+.. .+|+++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|.+
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i----------~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~----~G~i~-~~~~~ 66 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTL----------NAGDSWAFVGANGSGKSALARALAGELPLL----SGERQ-SQFSH 66 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CceEE-ECCcc
Confidence 6788999999642 3899999998 899999999999999999999999998754 57773 55655
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 67 ~~ 68 (490)
T PRK10938 67 IT 68 (490)
T ss_pred cc
Confidence 53
No 292
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=5.6e-07 Score=83.87 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=54.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEecc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKGL 100 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~gl 100 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|.. ....|++ .+.|.
T Consensus 5 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~ 71 (252)
T PRK14272 5 LSAQDVNIYYGD--KQAVKNVNLDV----------QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI-LLDGQ 71 (252)
T ss_pred EEEeeeEEEECC--EEeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE-EECCE
Confidence 567888888863 34899999998 8999999999999999999999999876321 0124777 46777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 72 ~~~ 74 (252)
T PRK14272 72 DIY 74 (252)
T ss_pred Ecc
Confidence 764
No 293
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=4.1e-07 Score=86.46 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~q 95 (343)
|.+..+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..++.. -...|++
T Consensus 16 ~~~~~l~~~nl~~~~~~--~~~l~~vs~~i----------~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i- 82 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG--FLALVDVHLKI----------PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL- 82 (274)
T ss_pred CCCceEEEeeEEEEeCC--eEEEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE-
Confidence 55667899999999874 24899999998 8899999999999999999999999864210 0125777
Q ss_pred EEeccccc
Q 019312 96 VYKGLDIT 103 (343)
Q Consensus 96 vy~gl~I~ 103 (343)
.+.|.++.
T Consensus 83 ~~~g~~l~ 90 (274)
T PRK14265 83 LYRDRNIY 90 (274)
T ss_pred EECCEecc
Confidence 47777664
No 294
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=3.8e-07 Score=85.09 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=54.3
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEecc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYKGL 100 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~gl 100 (343)
+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+..+. ...|++. +.|.
T Consensus 6 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~ 72 (252)
T PRK14255 6 ITSSDVHLFYGK--FEALKGIDLDF----------NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS-LRGQ 72 (252)
T ss_pred EEEEeEEEEECC--eeEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE-EcCE
Confidence 678899999874 34899999998 88999999999999999999999997541110 1257773 7777
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 73 ~~~ 75 (252)
T PRK14255 73 NIY 75 (252)
T ss_pred Ecc
Confidence 764
No 295
>PRK06762 hypothetical protein; Provisional
Probab=98.38 E-value=1e-06 Score=76.91 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=29.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~ 94 (343)
+.+|+|+|++||||||+++.|++.++. ..+++.|.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 368999999999999999999999842 445666655
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.37 E-value=3.7e-07 Score=93.87 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~----~G~i-~~~g~ 67 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTV----------YPGEIHALLGENGAGKSTLMKVLSGIHEPT----KGTI-TINNI 67 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCcCCC----ccEE-EECCE
Confidence 3778899998863 24899999998 899999999999999999999999998754 6888 47888
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 68 ~i~~ 71 (510)
T PRK09700 68 NYNK 71 (510)
T ss_pred ECCC
Confidence 7754
No 297
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.37 E-value=3.5e-06 Score=72.16 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=29.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+++|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~-~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG-APFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC-CEEEeCccc
Confidence 478999999999999999999988 778888877
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.37 E-value=4.5e-07 Score=85.88 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=48.9
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCC
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNK 106 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~k 106 (343)
.++++|++++ .+|++++|+|.|||||||+++.|.+...|. .|++ .|+|.++...+
T Consensus 27 ~avd~Vsf~i----------~~ge~~glVGESG~GKSTlgr~i~~L~~pt----~G~i-~f~g~~i~~~~ 81 (268)
T COG4608 27 KAVDGVSFSI----------KEGETLGLVGESGCGKSTLGRLILGLEEPT----SGEI-LFEGKDITKLS 81 (268)
T ss_pred EEecceeEEE----------cCCCEEEEEecCCCCHHHHHHHHHcCcCCC----CceE-EEcCcchhhcc
Confidence 4788999998 999999999999999999999999999876 7899 69999976433
No 299
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.2e-07 Score=92.33 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=58.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+.+.+++|.||.+. .++.++++++ ++++.++|+|+||||||||...|++.+++. .|++ ..+|.+
T Consensus 321 i~~~~l~~~y~~g~-~~l~~l~~t~----------~~g~~talvG~SGaGKSTLl~lL~G~~~~~----~G~I-~vng~~ 384 (559)
T COG4988 321 ISLENLSFRYPDGK-PALSDLNLTI----------KAGQLTALVGASGAGKSTLLNLLLGFLAPT----QGEI-RVNGID 384 (559)
T ss_pred eeecceEEecCCCC-cccCCceeEe----------cCCcEEEEECCCCCCHHHHHHHHhCcCCCC----CceE-EECCcc
Confidence 34559999999987 5889999998 899999999999999999999999999865 6777 467776
Q ss_pred ccCCC
Q 019312 102 ITTNK 106 (343)
Q Consensus 102 I~T~k 106 (343)
....+
T Consensus 385 l~~l~ 389 (559)
T COG4988 385 LRDLS 389 (559)
T ss_pred ccccC
Confidence 65433
No 300
>PRK06547 hypothetical protein; Provisional
Probab=98.36 E-value=7.7e-07 Score=79.34 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
....+|+|.|++||||||++..|++.++ ..+|+.|++ |.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-~~~~~~d~~--~~~ 52 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-FQLVHLDDL--YPG 52 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCeecccce--ecc
Confidence 3457899999999999999999999988 889999998 654
No 301
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.36 E-value=1.6e-06 Score=80.13 Aligned_cols=38 Identities=26% Similarity=0.515 Sum_probs=34.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+|+|.||+||||||+++.|++.++ ..+++.|.+ |+.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~-~~~~~~g~~--~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG-YAYLDSGAM--YRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CceeeCchH--HHHH
Confidence 4799999999999999999999998 888999988 6554
No 302
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=4.9e-07 Score=86.08 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=56.5
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g 99 (343)
-+.+.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .-.+.|++ .+.|
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGF----------PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV-LLGG 87 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE-EECC
Confidence 4688999999974 34899999998 899999999999999999999999987631 00136777 4777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++.+
T Consensus 88 ~~i~~ 92 (276)
T PRK14271 88 RSIFN 92 (276)
T ss_pred EEccc
Confidence 77653
No 303
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=5e-07 Score=84.33 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc---CCCceecCCceEEE
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF---FPSEIINSDKMQVY 97 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~---~~~eIIs~Ds~qvy 97 (343)
.+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.. ++. .+.|++ .+
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~--~~~G~i-~~ 67 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEI----------EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT--RLEGEI-RI 67 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEE----------eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC--CCceEE-EE
Confidence 4677888888864 34899999998 899999999999999999999999863 211 125777 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 68 ~g~~~~~ 74 (250)
T PRK14245 68 DGRNIYD 74 (250)
T ss_pred CCEeccc
Confidence 7877753
No 304
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.35 E-value=6.2e-07 Score=86.93 Aligned_cols=138 Identities=17% Similarity=0.290 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChh
Q 019312 54 AHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPD 133 (343)
Q Consensus 54 ~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~ 133 (343)
+.+.++..|+|+|+.||||||+++.|++.++ ..+|+.|.. +.+ ..|+. ...... .+...
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg-~~~id~D~~-i~~-------------~~G~~-----i~ei~~-~~G~~ 186 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLG-VPFVELNRE-IER-------------EAGLS-----VSEIFA-LYGQE 186 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEeHHHH-HHH-------------HhCCC-----HHHHHH-HHCHH
Confidence 3557889999999999999999999999998 777766644 111 11111 001111 24456
Q ss_pred hhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312 134 DFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK 213 (343)
Q Consensus 134 ~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 213 (343)
.|.+...+.+.++.......||..|.|.+. +|.. +.. ...+++++||.++.+.+.+|+.+
T Consensus 187 ~fr~~e~~~l~~ll~~~~~~VI~~Ggg~v~--------~~~~--~~~----------l~~~~~~V~L~a~~e~~~~Rl~~ 246 (309)
T PRK08154 187 GYRRLERRALERLIAEHEEMVLATGGGIVS--------EPAT--FDL----------LLSHCYTVWLKASPEEHMARVRA 246 (309)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEECCCchhC--------CHHH--HHH----------HHhCCEEEEEECCHHHHHHHHhc
Confidence 777777777777665443334443333321 1111 000 00134689999999999999987
Q ss_pred HHHH--HH-hccHHHHHHHHHh
Q 019312 214 RVDD--ML-ESGMFEELAEFFD 232 (343)
Q Consensus 214 Rv~~--Ml-~~GlleEv~~l~~ 232 (343)
|-+. +. +....++++.++.
T Consensus 247 r~~~rp~~~~~~~~e~i~~~~~ 268 (309)
T PRK08154 247 QGDLRPMADNREAMEDLRRILA 268 (309)
T ss_pred CCCCCCCCCCCChHHHHHHHHH
Confidence 6421 11 2234566666654
No 305
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.35 E-value=7.9e-07 Score=77.97 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=68.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe--cccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK--GLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~--gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+.++|+|++||||||+++.||+.++ ..+++.|.+. .. |+++. +..+ .++...|.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg-~~~~d~D~~~-~~~~g~~~~--------------------~~~~-~~g~~~~~~ 59 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG-YRFVDTDQWL-QSTSNMTVA--------------------EIVE-REGWAGFRA 59 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEEccHHH-HHHhCCCHH--------------------HHHH-HHCHHHHHH
Confidence 4688899999999999999999998 8888888762 11 11110 0011 234456776
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
...+.+..+ ..+...|.+||+..+ ++... . .+.....++||+.+.+.+.+||..|
T Consensus 60 ~e~~~~~~~-~~~~~vi~~ggg~vl---------~~~~~---------~---~l~~~~~~v~l~~~~~~~~~Rl~~r 114 (171)
T PRK03731 60 RESAALEAV-TAPSTVIATGGGIIL---------TEENR---------H---FMRNNGIVIYLCAPVSVLANRLEAN 114 (171)
T ss_pred HHHHHHHHh-cCCCeEEECCCCccC---------CHHHH---------H---HHHhCCEEEEEECCHHHHHHHHccc
Confidence 666777554 445554455554221 11000 0 0011235789999999999999876
No 306
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.34 E-value=4.7e-07 Score=93.01 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=55.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 5 i~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~ 67 (501)
T PRK10762 5 LQLKGIDKAFPG--VKALSGAALNV----------YPGRVMALVGENGAGKSTMMKVLTGIYTRD----AGSI-LYLGKE 67 (501)
T ss_pred EEEeeeEEEeCC--eEEeeeeeEEE----------cCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence 678889988863 34899999998 889999999999999999999999998754 6888 477777
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 68 ~~ 69 (501)
T PRK10762 68 VT 69 (501)
T ss_pred CC
Confidence 64
No 307
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=5.4e-07 Score=85.03 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=54.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g 99 (343)
.+.+.++++.|... .+++++++++ .+|++++|+||||||||||++.|++..++.. ....|++ .+.|
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDI----------PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHG 76 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECC
Confidence 47889999988642 4899999998 8999999999999999999999998764210 0125777 3667
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 77 ~~i~ 80 (264)
T PRK14243 77 KNLY 80 (264)
T ss_pred EEcc
Confidence 6664
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=8.6e-07 Score=91.18 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=56.4
Q ss_pred cceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEE
Q 019312 20 QHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVY 97 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy 97 (343)
.-+++.++++.|+.+ ...+++++++++ .+|++++|+||||||||||++.|++.++| . .|++ .+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i----------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~----~G~i-~~ 322 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSL----------RRGEILGIAGLVGAGRTELVQCLFGAYPGRW----EGEI-FI 322 (506)
T ss_pred ceEEEecCccccccccccccccceeeEE----------cCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC----CcEE-EE
Confidence 358899999988531 234899999998 89999999999999999999999998762 3 6777 47
Q ss_pred eccccc
Q 019312 98 KGLDIT 103 (343)
Q Consensus 98 ~gl~I~ 103 (343)
.|.++.
T Consensus 323 ~g~~~~ 328 (506)
T PRK13549 323 DGKPVK 328 (506)
T ss_pred CCEECC
Confidence 777764
No 309
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.34 E-value=4.9e-07 Score=93.17 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=56.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~ 73 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTL----------HAGEVHALLGGNGAGKSTLMKIIAGIVPPD----SGTL-EIGGN 73 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence 4788899998863 34899999998 889999999999999999999999998754 6788 47787
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 74 ~~~~ 77 (510)
T PRK15439 74 PCAR 77 (510)
T ss_pred ECCC
Confidence 7753
No 310
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=5.5e-07 Score=83.93 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=54.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC--CCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF--PSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~--~~eIIs~Ds~qvy~ 98 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++... |. ....|++ .+.
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i-~~~ 70 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDF----------YPNEITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSI-VYN 70 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceE-EEC
Confidence 4678899999874 24899999998 8899999999999999999999998742 21 1125777 477
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 71 g~~~~ 75 (252)
T PRK14239 71 GHNIY 75 (252)
T ss_pred CEECc
Confidence 77664
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.34 E-value=8e-07 Score=101.87 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=59.0
Q ss_pred cceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..+++.+|+|.|+.++ ..+|+++++++ ++|++++|+||||||||||++.|++.++|. .|++.+-.
T Consensus 381 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i----------~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~----~G~I~i~~ 446 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTRKDVEIYKDLNFTL----------TEGKTYAFVGESGCGKSTILKLIERLYDPT----EGDIIIND 446 (1466)
T ss_pred CcEEEEEEEEEcCCCCCCceeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHHHhccCC----CCeEEEeC
Confidence 4799999999998643 24899999998 899999999999999999999999999865 68884324
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 447 g~~i~ 451 (1466)
T PTZ00265 447 SHNLK 451 (1466)
T ss_pred Ccchh
Confidence 56664
No 312
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=7.5e-07 Score=86.04 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=55.8
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~ 98 (343)
..+.+.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++...+.. -...|++. +.
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i----------~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~-i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDI----------PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE-LD 110 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-EC
Confidence 45788999998874 34899999998 8999999999999999999999999874100 01267774 67
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 111 g~~i~ 115 (305)
T PRK14264 111 GQDIY 115 (305)
T ss_pred CEEcc
Confidence 77664
No 313
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.33 E-value=2.8e-07 Score=77.53 Aligned_cols=51 Identities=31% Similarity=0.494 Sum_probs=42.5
Q ss_pred cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
|+++++++ .+|++++|+|+||||||||++.|++...+. .|.+ .+.|.++..
T Consensus 1 L~~v~~~i----------~~g~~~~i~G~nGsGKStLl~~l~g~~~~~----~G~i-~~~~~~~~~ 51 (137)
T PF00005_consen 1 LKNVSLEI----------KPGEIVAIVGPNGSGKSTLLKALAGLLPPD----SGSI-LINGKDISD 51 (137)
T ss_dssp EEEEEEEE----------ETTSEEEEEESTTSSHHHHHHHHTTSSHES----EEEE-EETTEEGTT
T ss_pred CCceEEEE----------cCCCEEEEEccCCCccccceeeeccccccc----cccc-ccccccccc
Confidence 56788887 889999999999999999999999988742 5777 367777754
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.6e-07 Score=92.44 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=56.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g~ 66 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDC----------RAGQVHALMGENGAGKSTLLKILSGNYQPD----AGSI-LIDGQ 66 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCE
Confidence 4778899998864 24899999998 899999999999999999999999998754 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 67 ~i~ 69 (501)
T PRK11288 67 EMR 69 (501)
T ss_pred ECC
Confidence 774
No 315
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=7.7e-07 Score=83.82 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=54.3
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC--ceecCCceE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS--EIINSDKMQ 95 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~--eIIs~Ds~q 95 (343)
.+..+.+.++++.|.. +..++++++++ .+|++++|+||||||||||++.|++...|. +|.-.|.+
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~- 73 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKI----------PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV- 73 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE-
Confidence 3455778888888863 34899999998 889999999999999999999999987642 23223444
Q ss_pred EEecccc
Q 019312 96 VYKGLDI 102 (343)
Q Consensus 96 vy~gl~I 102 (343)
.+.|.++
T Consensus 74 ~~~g~~~ 80 (257)
T PRK14246 74 LYFGKDI 80 (257)
T ss_pred EECCccc
Confidence 2445444
No 316
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=3.8e-06 Score=73.71 Aligned_cols=143 Identities=14% Similarity=0.243 Sum_probs=90.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccc-ccccCccccccccCCCcccChhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHK-RHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e-~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+-+++|+|++||||||+++.|+..+. .++|..|.++- ..+.+. .+|+|-. |- +--.|..
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~-~~F~dgDd~Hp---------~~NveKM~~GipLn-----D~-----DR~pWL~ 71 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG-LKFIDGDDLHP---------PANVEKMTQGIPLN-----DD-----DRWPWLK 71 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC-CcccccccCCC---------HHHHHHHhcCCCCC-----cc-----cccHHHH
Confidence 45999999999999999999999999 88888888741 001111 2344321 11 2234554
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchh--hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSNS--FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV 215 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~l--Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv 215 (343)
.....+..-.+.|.. +|+.+|.| -++.++.+. ++. + ++.. .+...+.|++|..+.|++-+|+.+|-
T Consensus 72 ~i~~~~~~~l~~~q~-vVlACSaLKk~YRdILr~s-l~~------g---k~~~-~~~~~l~fi~l~~s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 72 KIAVELRKALASGQG-VVLACSALKKKYRDILRHS-LKD------G---KPGK-CPESQLHFILLSASFEVILKRLKKRK 139 (191)
T ss_pred HHHHHHHHHhhcCCe-EEEEhHHHHHHHHHHHHhh-ccc------C---CccC-CccceEEEeeeeccHHHHHHHHhhcc
Confidence 444444443445664 55566665 223444321 110 0 1111 11234678899999999999999999
Q ss_pred HHHHhccHHHHHHHHHhc
Q 019312 216 DDMLESGMFEELAEFFDS 233 (343)
Q Consensus 216 ~~Ml~~GlleEv~~l~~~ 233 (343)
.+.+..-|++---+.++.
T Consensus 140 gHFMp~~lleSQf~~LE~ 157 (191)
T KOG3354|consen 140 GHFMPADLLESQFATLEA 157 (191)
T ss_pred cccCCHHHHHHHHHhccC
Confidence 999999999887676654
No 317
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.32 E-value=6e-07 Score=92.83 Aligned_cols=73 Identities=11% Similarity=0.202 Sum_probs=57.9
Q ss_pred ceeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEE
Q 019312 21 HYSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVY 97 (343)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy 97 (343)
-+++.++++.|+.+ ...+++++++++ .+|++++|+||||||||||++.|++.++|.. ...+|++. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i----------~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~ 73 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQI----------EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR-F 73 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEE----------eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE-E
Confidence 37888999998642 234899999998 8899999999999999999999999987411 12368884 7
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 74 ~g~~i~~ 80 (529)
T PRK15134 74 HGESLLH 80 (529)
T ss_pred CCEeccc
Confidence 7887753
No 318
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.32 E-value=8.1e-07 Score=82.10 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=42.9
Q ss_pred cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
++++++++ .+|++++|+||||||||||++.|++..+|. .|++. +.|.++..
T Consensus 1 l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~~~~~ 51 (230)
T TIGR01184 1 LKGVNLTI----------QQGEFISLIGHSGCGKSTLLNLISGLAQPT----SGGVI-LEGKQITE 51 (230)
T ss_pred CCceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-ECCEECCC
Confidence 35678887 889999999999999999999999998754 78884 77877754
No 319
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.31 E-value=8.9e-07 Score=92.17 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+.+.|+|+|+.||||||+++.||+.++ .++|+.|.. +- +..|. ++-+..+ .+....|++
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~-~~fiD~D~~-ie-------------~~~g~-----si~eif~-~~Ge~~FR~ 63 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMR-LPFADADVE-IE-------------REIGM-----SIPSYFE-EYGEPAFRE 63 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhC-CCEEEchHH-HH-------------HHHCc-----CHHHHHH-HHHHHHHHH
Confidence 456899999999999999999999999 888888876 11 11111 1112222 456788998
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD 217 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~ 217 (343)
...+++.++.......|-+||.... +|+.. .-+...++....++||+.+.+.+.+|+..+-.+
T Consensus 64 ~E~~~l~~~~~~~~~VIs~GGG~v~---------~~~n~--------~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~R 126 (542)
T PRK14021 64 VEADVVADMLEDFDGIFSLGGGAPM---------TPSTQ--------HALASYIAHGGRVVYLDADPKEAMERANRGGGR 126 (542)
T ss_pred HHHHHHHHHHhcCCeEEECCCchhC---------CHHHH--------HHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCC
Confidence 8889999887655544557775322 22110 000000112346899999999999998643111
Q ss_pred -HHhccHHHHHHHHHhc
Q 019312 218 -MLESGMFEELAEFFDS 233 (343)
Q Consensus 218 -Ml~~GlleEv~~l~~~ 233 (343)
++...-.+++++|++.
T Consensus 127 Pll~~~~~~~~~~l~~~ 143 (542)
T PRK14021 127 PMLNGDANKRWKKLFKQ 143 (542)
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 2322224566666654
No 320
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=5.8e-07 Score=92.44 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=56.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.+++.. ..|++. +.|.
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~-~~g~ 69 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKV----------RAGEIVSLCGENGAGKSTLMKVLSGVYPHGT--YEGEII-FEGE 69 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEE----------eCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--CCeEEE-ECCE
Confidence 3788899999863 34899999998 8899999999999999999999999887410 268884 7888
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 70 ~~~~ 73 (506)
T PRK13549 70 ELQA 73 (506)
T ss_pred ECCC
Confidence 7753
No 321
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.31 E-value=7.1e-07 Score=82.81 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=44.7
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|.++.
T Consensus 34 ~~il~~vs~~i----------~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~----~G~i~-~~g~~~~ 86 (236)
T cd03267 34 VEALKGISFTI----------EKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVR-VAGLVPW 86 (236)
T ss_pred eeeeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ceEEE-ECCEEcc
Confidence 45899999998 889999999999999999999999988754 68774 6666543
No 322
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.30 E-value=9.5e-07 Score=90.60 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=56.3
Q ss_pred cceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEE
Q 019312 20 QHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVY 97 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy 97 (343)
.-+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++..+| . .|++ .+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~----~G~i-~~ 320 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSL----------RRGEILGVAGLVGAGRTELVQALFGAYPGKF----EGNV-FI 320 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEE----------eCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC----CeEE-EE
Confidence 358899999887532 234899999998 89999999999999999999999999863 3 5778 47
Q ss_pred eccccc
Q 019312 98 KGLDIT 103 (343)
Q Consensus 98 ~gl~I~ 103 (343)
.|.++.
T Consensus 321 ~g~~~~ 326 (500)
T TIGR02633 321 NGKPVD 326 (500)
T ss_pred CCEECC
Confidence 787774
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.30 E-value=7.3e-07 Score=92.84 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=51.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
-+++.++++.|... ..+++++++++ .+|.+++|+||||||||||++.|++.++|. .|++.
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i----------~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~----~G~i~ 65 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSF----------FPGAKIGVLGLNGAGKSTLLRIMAGVDKEF----EGEAR 65 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE
Confidence 47888999999633 34899999998 899999999999999999999999998754 56664
No 324
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.30 E-value=1.1e-06 Score=84.11 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312 14 YHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK 93 (343)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds 93 (343)
.++-....+++.++++. . ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|+
T Consensus 32 ~~~~~~~~l~i~nls~~---~-~~vL~~vs~~i----------~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~----~G~ 93 (282)
T cd03291 32 KHSSDDNNLFFSNLCLV---G-APVLKNINLKI----------EKGEMLAITGSTGSGKTSLLMLILGELEPS----EGK 93 (282)
T ss_pred ccCCCCCeEEEEEEEEe---c-ccceeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcE
Confidence 34444467899999985 2 34899999998 899999999999999999999999998754 566
Q ss_pred eE
Q 019312 94 MQ 95 (343)
Q Consensus 94 ~q 95 (343)
+.
T Consensus 94 I~ 95 (282)
T cd03291 94 IK 95 (282)
T ss_pred EE
Confidence 63
No 325
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=8.2e-07 Score=77.00 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=50.5
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+.+++|.|+.. ..++++++++ .++++++|+||||||||||++.|++.+++. .+.+. +.|.++.
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i----------~~g~~~~i~G~nGsGKStll~~l~g~~~~~----~G~i~-~~~~~~~ 64 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTL----------KAGEIVALVGPNGSGKSTLLRAIAGLLKPT----SGEIL-IDGKDIA 64 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ccEEE-ECCEEcc
Confidence 34566777643 4899999998 889999999999999999999999988743 67773 6676654
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.29 E-value=1.1e-06 Score=77.66 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=30.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+||+||||||++..|++.++ ..+||.|.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-FTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CeEEECChH
Confidence 578999999999999999999998 889998877
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=9.6e-07 Score=93.57 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=51.5
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
...+++.++++.|.. ..+++++++++ .+|.+++|+||||||||||++.|++..+|. .|++.
T Consensus 310 ~~~l~~~~l~~~y~~--~~il~~isl~i----------~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~----~G~i~ 370 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--RIILDSIKLNL----------VPGSRIGLLGRNGAGKSTLIKLLAGELAPV----SGEIG 370 (638)
T ss_pred CceEEEEeeEEEeCC--eeeeccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCeEE
Confidence 346889999998863 34899999998 899999999999999999999999998754 56663
No 328
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=9.7e-07 Score=82.28 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=53.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEecc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKGL 100 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~gl 100 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..++.+ ..+.|++. +.|.
T Consensus 4 l~~~~v~~~~~~--~~~l~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~ 70 (250)
T PRK14266 4 IEVENLNTYFDD--AHILKNVNLDI----------PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY-LDGV 70 (250)
T ss_pred EEEEeEEEEeCC--eEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE-ECCE
Confidence 567888888863 23899999998 8899999999999999999999998753111 01367773 6676
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 71 ~i~ 73 (250)
T PRK14266 71 DIY 73 (250)
T ss_pred Ecc
Confidence 654
No 329
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.28 E-value=8.6e-07 Score=85.40 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=46.2
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
.+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++..
T Consensus 7 ~~l~~vs~~i----------~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~~~ 59 (302)
T TIGR01188 7 KAVDGVNFKV----------REGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTA-RVAGYDVVR 59 (302)
T ss_pred eEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEccc
Confidence 4799999998 899999999999999999999999998754 6888 477887753
No 330
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=1.5e-06 Score=75.52 Aligned_cols=130 Identities=17% Similarity=0.292 Sum_probs=89.4
Q ss_pred EcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccc-cccCccccccccCCCcccChhhhhhhhhHHH
Q 019312 65 MGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR-HNVPHHLLGEFVPDDVEFTPDDFRLQADNAI 143 (343)
Q Consensus 65 ~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~-~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i 143 (343)
||.+||||||++..||..++ .+.|..|+++--. +| +.+ .|+|- .|- +-.-|.+.....+
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~fidGDdlHp~a--Ni-------~KM~~GiPL-----~Dd-----DR~pWL~~l~~~~ 60 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKFIDGDDLHPPA--NI-------EKMSAGIPL-----NDD-----DRWPWLEALGDAA 60 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-CceecccccCCHH--HH-------HHHhCCCCC-----Ccc-----hhhHHHHHHHHHH
Confidence 69999999999999999999 9999999885111 11 111 23331 122 2356777777777
Q ss_pred HHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccH
Q 019312 144 SDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGM 223 (343)
Q Consensus 144 ~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~Gl 223 (343)
....+.|+. +|+.+|.| -..+.|- ++.. .-.+.|+||+.+.+.+.+|+..|-.+.|...|
T Consensus 61 ~~~~~~~~~-~vi~CSAL-----Kr~YRD~----LR~~----------~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~l 120 (161)
T COG3265 61 ASLAQKNKH-VVIACSAL-----KRSYRDL----LREA----------NPGLRFVYLDGDFDLILERMKARKGHFMPASL 120 (161)
T ss_pred HHhhcCCCc-eEEecHHH-----HHHHHHH----Hhcc----------CCCeEEEEecCCHHHHHHHHHhcccCCCCHHH
Confidence 777777775 56666654 2221211 2211 11367999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 019312 224 FEELAEFFDSD 234 (343)
Q Consensus 224 leEv~~l~~~~ 234 (343)
++---+.++..
T Consensus 121 l~SQfa~LE~P 131 (161)
T COG3265 121 LDSQFATLEEP 131 (161)
T ss_pred HHHHHHHhcCC
Confidence 99876666553
No 331
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1.5e-06 Score=89.39 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=54.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|. .+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~----~G~I-~~~g~ 325 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSV----------CRGEILGFAGLVGSGRTELMNCLFGVDKRA----GGEI-RLNGK 325 (510)
T ss_pred EEEEeCccccCC----CcccceeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCcCC----CCeE-EECCE
Confidence 488889998652 2799999998 899999999999999999999999998754 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 326 ~~~ 328 (510)
T PRK09700 326 DIS 328 (510)
T ss_pred ECC
Confidence 764
No 332
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1.3e-06 Score=89.55 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=56.1
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
.+..+++.++++.+ ..+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+
T Consensus 247 ~~~~i~~~~l~~~~----~~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~ 307 (491)
T PRK10982 247 GEVILEVRNLTSLR----QPSIRDVSFDL----------HKGEILGIAGLVGAKRTDIVETLFGIREKS----AGTI-TL 307 (491)
T ss_pred CCcEEEEeCccccc----CcccceeeEEE----------eCCcEEEEecCCCCCHHHHHHHHcCCCcCC----ccEE-EE
Confidence 34468889999874 23899999998 899999999999999999999999998754 6777 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 308 ~g~~i~~ 314 (491)
T PRK10982 308 HGKKINN 314 (491)
T ss_pred CCEECCC
Confidence 7777753
No 333
>PRK08233 hypothetical protein; Provisional
Probab=98.28 E-value=6.7e-06 Score=72.22 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=28.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|.|++|||||||+..|++.++...++..|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 579999999999999999999999863334434433
No 334
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.28 E-value=9e-07 Score=93.50 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=57.9
Q ss_pred ceeecccCCcCCcc---------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312 21 HYSSFYSPFLHPKR---------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS 91 (343)
Q Consensus 21 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~ 91 (343)
-+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++.++|. .
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i----------~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~----~ 378 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL----------WPGETLSLVGESGSGKSTTGRALLRLVESQ----G 378 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----C
Confidence 47888999888631 124789999998 899999999999999999999999998754 7
Q ss_pred CceEEEecccccCC
Q 019312 92 DKMQVYKGLDITTN 105 (343)
Q Consensus 92 Ds~qvy~gl~I~T~ 105 (343)
|++ .|.|.++...
T Consensus 379 G~I-~~~g~~i~~~ 391 (623)
T PRK10261 379 GEI-IFNGQRIDTL 391 (623)
T ss_pred cEE-EECCEECCcC
Confidence 888 4888887643
No 335
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.27 E-value=8e-07 Score=91.16 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=54.4
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..+|. ...|++ .+.|.+
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i----------~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~--~~~G~i-~~~g~~ 66 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEV----------RPGECVGLCGENGAGKSTLMKILSGVYPHG--TWDGEI-YWSGSP 66 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEE-EECCEE
Confidence 467788888853 34899999998 899999999999999999999999987641 026777 477877
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 67 ~~~ 69 (500)
T TIGR02633 67 LKA 69 (500)
T ss_pred CCC
Confidence 753
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.27 E-value=1.5e-06 Score=90.03 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 16 HQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
..+...+++.++++.|... ...+.++++.+ .++..|+|+||||+|||||++.|++...+. +|++.
T Consensus 316 ~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i----------~~g~riaiiG~NG~GKSTLlk~l~g~~~~~----~G~v~ 380 (530)
T COG0488 316 RLGKLVLEFENVSKGYDGG-RLLLKDLSFRI----------DRGDRIAIVGPNGAGKSTLLKLLAGELGPL----SGTVK 380 (530)
T ss_pred cCCCeeEEEeccccccCCC-ceeecCceEEe----------cCCCEEEEECCCCCCHHHHHHHHhhhcccC----CceEE
Confidence 4455778999999999876 44889999998 899999999999999999999999988754 67775
Q ss_pred EEeccccc
Q 019312 96 VYKGLDIT 103 (343)
Q Consensus 96 vy~gl~I~ 103 (343)
+-.++.|+
T Consensus 381 ~g~~v~ig 388 (530)
T COG0488 381 VGETVKIG 388 (530)
T ss_pred eCCceEEE
Confidence 44444443
No 337
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.27 E-value=1.4e-06 Score=81.85 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=45.8
Q ss_pred CcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 29 FLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
|.||.... .+.++++.+-+ ..+.+|++++|+||||||||||++.|++..+|. .|++. +.|
T Consensus 1 ~~y~~~~~-~~~~~~l~~~~-----~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~----~G~i~-~~g 60 (246)
T cd03237 1 YTYPTMKK-TLGEFTLEVEG-----GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD----EGDIE-IEL 60 (246)
T ss_pred CCCccccc-ccCcEEEEEec-----CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CCeEE-ECC
Confidence 56665544 77888888722 235689999999999999999999999998754 57663 444
No 338
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.27 E-value=1e-06 Score=81.32 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=43.5
Q ss_pred cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
++++++++ .+|++++|+||||||||||++.|++..+|....+.|++ .+.|.++.
T Consensus 2 l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~ 55 (230)
T TIGR02770 2 VQDLNLSL----------KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLL 55 (230)
T ss_pred ccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEech
Confidence 57888887 89999999999999999999999999875111136888 47787764
No 339
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=75.67 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=58.3
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.+|+.+-+.+ ..|.++++++ .+|+++.||||||||||||.--+++.+. ..+-..+++ ...+.+
T Consensus 3 l~l~nvsl~l~g~--cLLa~~n~Ti----------a~GeivtlMGPSGcGKSTLls~~~G~La-~~F~~~G~~-~l~~~~ 68 (213)
T COG4136 3 LCLKNVSLRLPGS--CLLANVNFTI----------AKGEIVTLMGPSGCGKSTLLSWMIGALA-GQFSCTGEL-WLNEQR 68 (213)
T ss_pred eeeeeeeecCCCc--eEEEeeeEEe----------cCCcEEEEECCCCccHHHHHHHHHhhcc-cCcceeeEE-EECCee
Confidence 4677888776643 4678899997 8999999999999999999999999887 445456777 466666
Q ss_pred ccCCCCCccccccc
Q 019312 102 ITTNKIPSHKRHNV 115 (343)
Q Consensus 102 I~T~kp~~~e~~~i 115 (343)
+.+ -|......||
T Consensus 69 l~~-lPa~qRq~Gi 81 (213)
T COG4136 69 LDM-LPAAQRQIGI 81 (213)
T ss_pred ccc-cchhhhheee
Confidence 653 3433333444
No 340
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.26 E-value=1.1e-06 Score=87.10 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=47.8
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN 105 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~ 105 (343)
.+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++...
T Consensus 7 ~~l~~vs~~i----------~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~----~G~I-~i~G~~i~~~ 60 (363)
T TIGR01186 7 KGVNDADLAI----------AKGEIFVIMGLSGSGKSTTVRMLNRLIEPT----AGQI-FIDGENIMKQ 60 (363)
T ss_pred eeEEeeEEEE----------cCCCEEEEECCCCChHHHHHHHHhCCCCCC----ceEE-EECCEECCcC
Confidence 3789999998 899999999999999999999999999865 7888 5889888643
No 341
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.26 E-value=1.4e-06 Score=92.11 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=53.4
Q ss_pred ceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
-+++.++++.|.... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v----------~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~----~G~i~-~~ 76 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSL----------QRGETLAIVGESGSGKSVTALALMRLLEQA----GGLVQ-CD 76 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCC----CeEEE-EC
Confidence 578889998886432 34899999998 889999999999999999999999998753 56662 55
Q ss_pred ccc
Q 019312 99 GLD 101 (343)
Q Consensus 99 gl~ 101 (343)
|.+
T Consensus 77 g~~ 79 (623)
T PRK10261 77 KML 79 (623)
T ss_pred CEE
Confidence 543
No 342
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=1e-06 Score=91.06 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=48.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+++.++++.|+. ..+++++++++ .+|.+++|+||||||||||++.|++.++|. .|++
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i----------~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~----~G~i 58 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKF----------GGGNRYGLIGANGCGKSTFMKILGGDLEPS----AGNV 58 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE
Confidence 467788888863 24899999998 899999999999999999999999988753 5666
No 343
>PRK08118 topology modulation protein; Reviewed
Probab=98.25 E-value=9.2e-06 Score=71.88 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=31.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.|+|+||+||||||||+.|++.++ .++++.|.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~-~~~~~lD~l 35 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN-IPVHHLDAL 35 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCceecchh
Confidence 4689999999999999999999999 888888877
No 344
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.24 E-value=4.2e-06 Score=79.93 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=67.8
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
.+|+++|++||||||+++.|++.++...+||.|.+. ..+. ... ..... . ..... ........
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r--~~~~-~~~-----~~~~~-----~-~~~~~----~~~~~~~~ 64 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLR--QSLF-GHG-----EWGEY-----K-FTKEK----EDLVTKAQ 64 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHH--HHhc-CCC-----ccccc-----c-cChHH----HHHHHHHH
Confidence 688999999999999999999999337888888762 1110 000 00000 0 00000 01111222
Q ss_pred hHHHHHHHhcCCeeEEEcCchh---hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 140 DNAISDIISRKKTPLLVGGSNS---FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~l---Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
...+.+..+.|.. +|+.+|.+ +.+.+.. +.....+.+.++++.++.+++.+|+.+|-.
T Consensus 65 ~~~~~~~l~~g~~-vIid~~~~~~~~~~~~~~------------------la~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 125 (300)
T PHA02530 65 EAAALAALKSGKS-VIISDTNLNPERRRKWKE------------------LAKELGAEFEEKVFDVPVEELVKRNRKRGE 125 (300)
T ss_pred HHHHHHHHHcCCe-EEEeCCCCCHHHHHHHHH------------------HHHHcCCeEEEEEeCCCHHHHHHHHHccCc
Confidence 3344555556765 55555544 2221110 001123456678999999999999999943
No 345
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.2e-06 Score=84.36 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=50.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++.+.+++..++..+ ++.++++.+ +.|++++++||||||||||++.+|+...|. +|.+ ++.|.
T Consensus 2 ~i~i~~~~~~~~~~~--a~~di~l~i----------~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~----~G~I-~~~~~ 64 (345)
T COG1118 2 SIRINNVKKRFGAFG--ALDDISLDI----------KSGELVALLGPSGAGKSTLLRIIAGLETPD----AGRI-RLNGR 64 (345)
T ss_pred ceeehhhhhhccccc--ccccceeee----------cCCcEEEEECCCCCcHHHHHHHHhCcCCCC----CceE-EECCE
Confidence 345566666666443 466889987 889999999999999999999999998865 6777 57777
No 346
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.7e-06 Score=78.91 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=54.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.+|+-.|... .++.++++.+ ++|++..|+||||+|||||.-.+++.++.. +|++ .++|++
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i----------~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d----~G~i-~i~g~~ 64 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDI----------PKGGITSIIGPNGAGKSTLLSMMSRLLKKD----SGEI-TIDGLE 64 (252)
T ss_pred eeehhhhHhhCCE--Eeeccceeee----------cCCceeEEECCCCccHHHHHHHHHHhcccc----CceE-EEeeee
Confidence 4566777777643 3788999997 899999999999999999999999999833 7888 589999
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
++.-
T Consensus 65 ~~~~ 68 (252)
T COG4604 65 LTST 68 (252)
T ss_pred cccC
Confidence 8643
No 347
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.24 E-value=7.9e-07 Score=91.05 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=51.7
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
.++++.|+. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.++..
T Consensus 2 ~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~~~ 64 (491)
T PRK10982 2 SNISKSFPG--VKALDNVNLKV----------RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSI-LFQGKEIDF 64 (491)
T ss_pred CceEEEeCC--EEeeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----ceEE-EECCEECCC
Confidence 356666753 34899999998 899999999999999999999999998754 6888 477877743
No 348
>PRK14530 adenylate kinase; Provisional
Probab=98.23 E-value=2.9e-06 Score=77.63 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=32.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
++.|+|+||+||||||+++.|++.++ ...|+.|.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~-~~~i~~g~~ 37 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG-VEHVTTGDA 37 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CeEEeccHH
Confidence 45799999999999999999999998 888888887
No 349
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.23 E-value=1.3e-06 Score=90.85 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=50.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
-+++.++++.|+... .+++++++++ .+|.+++|+||||||||||++.|++...|. .|++
T Consensus 4 ~i~~~nls~~~~~~~-~il~~is~~i----------~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~----~G~i 62 (552)
T TIGR03719 4 IYTMNRVSKVVPPKK-EILKDISLSF----------FPGAKIGVLGLNGAGKSTLLRIMAGVDKEF----NGEA 62 (552)
T ss_pred EEEEeeEEEecCCCC-eeecCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE
Confidence 477889999997333 4899999998 899999999999999999999999998753 5666
No 350
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=1.4e-06 Score=79.37 Aligned_cols=58 Identities=24% Similarity=0.207 Sum_probs=47.0
Q ss_pred ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+++..|... .. ++++++ .+ ++++|+||||||||||++.|++.++|. .|++ .+.|.++.
T Consensus 5 ~l~~~~~~~---~~-~vsl~i----------~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~~ 62 (214)
T cd03297 5 DIEKRLPDF---TL-KIDFDL----------NE-EVTGIFGASGAGKSTLLRCIAGLEKPD----GGTI-VLNGTVLF 62 (214)
T ss_pred eeeEecCCe---ee-CceEEE----------cc-eeEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEecc
Confidence 677777653 23 999997 88 999999999999999999999998754 6888 46776654
No 351
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.22 E-value=1.4e-06 Score=81.53 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=48.3
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+.++++. ..++++++++ .+|++++|+||||||||||++.|++..+ . .|++ .+.|.++.
T Consensus 3 ~~~l~~~------~~l~~vsl~i----------~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~----~G~i-~~~g~~i~ 60 (248)
T PRK03695 3 LNDVAVS------TRLGPLSAEV----------RAGEILHLVGPNGAGKSTLLARMAGLLP-G----SGSI-QFAGQPLE 60 (248)
T ss_pred ccccchh------ceecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCC-C----CeEE-EECCEecC
Confidence 4556664 2689999998 8999999999999999999999999875 3 5888 47887775
Q ss_pred C
Q 019312 104 T 104 (343)
Q Consensus 104 T 104 (343)
.
T Consensus 61 ~ 61 (248)
T PRK03695 61 A 61 (248)
T ss_pred c
Confidence 3
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=98.22 E-value=1.6e-06 Score=93.07 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=51.5
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.-+++.++++.|+... .+++++++++ .+|.+++|+||||||||||++.|++.++|. .|++
T Consensus 507 ~~L~~~~ls~~y~~~~-~il~~vsl~i----------~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~----~G~I 566 (718)
T PLN03073 507 PIISFSDASFGYPGGP-LLFKNLNFGI----------DLDSRIAMVGPNGIGKSTILKLISGELQPS----SGTV 566 (718)
T ss_pred ceEEEEeeEEEeCCCC-eeEeccEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CceE
Confidence 4588999999996433 3899999998 899999999999999999999999998754 5666
No 353
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.22 E-value=1.4e-06 Score=89.22 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=54.3
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++..++. ..|++ .+.|
T Consensus 259 ~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~---~~G~i-~~~g 322 (490)
T PRK10938 259 PRIVLNNGVVSYND--RPILHNLSWQV----------NPGEHWQIVGPNGAGKSTLLSLITGDHPQG---YSNDL-TLFG 322 (490)
T ss_pred ceEEEeceEEEECC--eeEEeeceEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCcc---cCCeE-EEec
Confidence 35788899988864 24899999998 899999999999999999999999976521 15777 4677
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 323 ~~~~ 326 (490)
T PRK10938 323 RRRG 326 (490)
T ss_pred ccCC
Confidence 6553
No 354
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.22 E-value=1.6e-06 Score=89.59 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred ceeecccCCcCCcc---------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312 21 HYSSFYSPFLHPKR---------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS 91 (343)
Q Consensus 21 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~ 91 (343)
-+++.++++.|+.. ...+++++++++ .+|++++|+||||||||||++.|++.++ . .
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~----~ 339 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL----------RPGETLGLVGESGSGKSTTGLALLRLIN-S----Q 339 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHhCcCC-C----C
Confidence 47889999988631 234899999998 8999999999999999999999999875 3 6
Q ss_pred CceEEEecccccC
Q 019312 92 DKMQVYKGLDITT 104 (343)
Q Consensus 92 Ds~qvy~gl~I~T 104 (343)
|++ .+.|.++..
T Consensus 340 G~i-~~~g~~i~~ 351 (529)
T PRK15134 340 GEI-WFDGQPLHN 351 (529)
T ss_pred cEE-EECCEEccc
Confidence 888 478877753
No 355
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.22 E-value=1.7e-06 Score=79.25 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=37.8
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+++++++++ .+|++++|+||||||||||++.|++..+|. .|++
T Consensus 2 vl~~vs~~i----------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~----sG~i 44 (213)
T PRK15177 2 VLDKTDFVM----------GYHEHIGILAAPGSGKTTLTRLLCGLDAPD----EGDF 44 (213)
T ss_pred eeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCccCC----CCCE
Confidence 478899997 899999999999999999999999987644 5666
No 356
>PRK03839 putative kinase; Provisional
Probab=98.21 E-value=5.7e-06 Score=73.29 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+|++||||||+++.||+.++ ..+|+.|.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~-~~~id~d~~ 34 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG-YEYVDLTEF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEehhhh
Confidence 589999999999999999999998 889998876
No 357
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.21 E-value=1.4e-06 Score=89.64 Aligned_cols=128 Identities=17% Similarity=0.301 Sum_probs=80.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD 140 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~ 140 (343)
.|+|+|+.||||||+++.||+.++ .++|+.|.. +.+ ..+. ...+..+ .+....|++...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg-~~~id~D~~-i~~-------------~~g~-----~i~~i~~-~~Ge~~fr~~E~ 60 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD-LQFIDMDEE-IER-------------REGR-----SVRRIFE-EDGEEYFRLKEK 60 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CeEEECcHH-HHH-------------HcCC-----CHHHHHH-HhhhHHHHHHHH
Confidence 478999999999999999999998 889988876 111 1111 0111112 345577887777
Q ss_pred HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 019312 141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLE 220 (343)
Q Consensus 141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~ 220 (343)
+.++++....+..|-+||.... |+... ..+ + ...++||+++.+.+.+|+..|-.-++.
T Consensus 61 ~~l~~l~~~~~~Vis~Gggvv~---------~~~~r--------~~l----~-~~~vI~L~as~e~l~~Rl~~~~RPLl~ 118 (488)
T PRK13951 61 ELLRELVERDNVVVATGGGVVI---------DPENR--------ELL----K-KEKTLFLYAPPEVLMERVTTENRPLLR 118 (488)
T ss_pred HHHHHHhhcCCEEEECCCcccc---------ChHHH--------HHH----h-cCeEEEEECCHHHHHHHhccCCCCCcc
Confidence 8888887666654446664321 22110 000 1 123789999999999999875333333
Q ss_pred ccHHHHHHHHHh
Q 019312 221 SGMFEELAEFFD 232 (343)
Q Consensus 221 ~GlleEv~~l~~ 232 (343)
.+ .++++++++
T Consensus 119 ~~-~e~l~~L~~ 129 (488)
T PRK13951 119 EG-KERIREIWE 129 (488)
T ss_pred cc-HHHHHHHHH
Confidence 22 456666654
No 358
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.3e-06 Score=92.53 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=48.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+++.++++.|.. ..+++++++++ .+|.+++|+||||||||||++.|++...|. .|++.
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i----------~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd----~G~I~ 59 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATI----------NPGQKVGLVGKNGCGKSTLLALLKNEISAD----GGSYT 59 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE
Confidence 467788888853 34899999998 899999999999999999999999987643 56664
No 359
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.21 E-value=6.7e-06 Score=74.39 Aligned_cols=127 Identities=22% Similarity=0.318 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC-cccChh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD-VEFTPD 133 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~-~~~s~~ 133 (343)
..+.+++|.|++||||||++..+...+ +...+||+|.+. .-+ |...+. ... .+.+ ...+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r--~~~------p~~~~~-------~~~-~~~~~~~~~~~ 76 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR--QFH------PDYDEL-------LKA-DPDEASELTQK 76 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG--GGS------TTHHHH-------HHH-HCCCTHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH--Hhc------cchhhh-------hhh-hhhhhHHHHHH
Confidence 567899999999999999999999887 335567777662 111 111111 011 1111 012222
Q ss_pred hhhhhhhHHHHHHHhcCCeeEEEcCchh---hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312 134 DFRLQADNAISDIISRKKTPLLVGGSNS---FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY 210 (343)
Q Consensus 134 ~f~~~a~~~i~~i~~~g~~pIlvGGT~l---Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R 210 (343)
.-...+..+++.+.+++. .|++-||.. ++..++.. +. ...|.+.++++.++.+.-..|
T Consensus 77 ~a~~~~~~~~~~a~~~~~-nii~E~tl~~~~~~~~~~~~--------~k----------~~GY~v~l~~v~~~~e~s~~r 137 (199)
T PF06414_consen 77 EASRLAEKLIEYAIENRY-NIIFEGTLSNPSKLRKLIRE--------AK----------AAGYKVELYYVAVPPELSIER 137 (199)
T ss_dssp HHHHHHHHHHHHHHHCT---EEEE--TTSSHHHHHHHHH--------HH----------CTT-EEEEEEE---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CEEEecCCCChhHHHHHHHH--------HH----------cCCceEEEEEEECCHHHHHHH
Confidence 333455566777776666 566666643 22222221 11 124778888888899999999
Q ss_pred HHHHHHHH
Q 019312 211 LNKRVDDM 218 (343)
Q Consensus 211 I~~Rv~~M 218 (343)
+..|+.+=
T Consensus 138 v~~R~~~~ 145 (199)
T PF06414_consen 138 VRQRYEEG 145 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 99998544
No 360
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.19 E-value=1.5e-06 Score=82.08 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=42.6
Q ss_pred ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
++++.|+... .++++++ .+ .+|++++|+||||||||||++.|++.++|. .|++
T Consensus 5 ~~~~~y~~~~-~~l~~i~-~i----------~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~----~G~I 57 (255)
T cd03236 5 EPVHRYGPNS-FKLHRLP-VP----------REGQVLGLVGPNGIGKSTALKILAGKLKPN----LGKF 57 (255)
T ss_pred CcceeecCcc-hhhhcCC-CC----------CCCCEEEEECCCCCCHHHHHHHHhCCcCCC----CceE
Confidence 5777776433 3778887 34 789999999999999999999999998754 5665
No 361
>PRK14527 adenylate kinase; Provisional
Probab=98.19 E-value=2.8e-06 Score=76.19 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++++|+|+||+||||||+++.|+..++ ...++.|.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~-~~~is~gd~ 40 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG-LKKLSTGDI 40 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-CCCCCccHH
Confidence 4578999999999999999999999998 888888887
No 362
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.19 E-value=1.8e-06 Score=89.00 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=52.3
Q ss_pred cceeecccCCcCCc---ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 20 QHYSSFYSPFLHPK---RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 20 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.-+++.++++.|+. +...+++++++++ .+|++++|+||||||||||++.|++.++|. .|++.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~----~G~i~ 342 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEV----------KEGEIFGIVGTSGAGKTTLSKIIAGVLEPT----SGEVN 342 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE
Confidence 35889999999863 2234899999998 899999999999999999999999998754 67774
No 363
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.19 E-value=6.1e-06 Score=74.65 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=31.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|.|++||||||+++.|++.++...+|+.|..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence 5899999999999999999999855889999988
No 364
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.18 E-value=1.8e-06 Score=91.85 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=49.5
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
..+++.+++|.|+.+. .+++++++++ ++|++++|+||||||||||++.|++..++
T Consensus 450 ~~i~~~nv~~~~~~~~-~il~~isl~i----------~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~ 504 (659)
T TIGR00954 450 NGIKFENIPLVTPNGD-VLIESLSFEV----------PSGNHLLICGPNGCGKSSLFRILGELWPV 504 (659)
T ss_pred CeEEEEeeEEECCCCC-eeeecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4699999999998554 4899999998 89999999999999999999999998874
No 365
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.18 E-value=1.7e-06 Score=77.44 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
.++++++|+||||||||||++.|++...|. .|++. +.|.++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~~i 63 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN----GDNDE-WDGITP 63 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC----CcEEE-ECCEEE
Confidence 789999999999999999999999998754 67773 666543
No 366
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.17 E-value=4.1e-06 Score=86.40 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=53.4
Q ss_pred ceeecccCCcCCc---------ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312 21 HYSSFYSPFLHPK---------RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS 91 (343)
Q Consensus 21 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~ 91 (343)
-++..+++-.|.. +...+++++++.+ .+|++++|+|.||||||||++.|++...|. +
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l----------~~GE~lglVGeSGsGKSTlar~i~gL~~P~----~ 345 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL----------REGETLGLVGESGSGKSTLARILAGLLPPS----S 345 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEe----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----C
Confidence 3445666666663 2345789999998 999999999999999999999999999864 7
Q ss_pred CceEEEeccc
Q 019312 92 DKMQVYKGLD 101 (343)
Q Consensus 92 Ds~qvy~gl~ 101 (343)
|++ +|.|.+
T Consensus 346 G~i-~~~g~~ 354 (539)
T COG1123 346 GSI-IFDGQD 354 (539)
T ss_pred ceE-EEeCcc
Confidence 888 588876
No 367
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.17 E-value=2.5e-06 Score=88.12 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCCCCccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312 14 YHHQQQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92 (343)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D 92 (343)
|...-...+++.+++|.|..+. ..+|+++++++ .+|.+++|+||||||||||++.|++..+|. .|
T Consensus 14 y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI----------~~GEivgIiGpNGSGKSTLLkiLaGLl~P~----sG 79 (549)
T PRK13545 14 YKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEV----------PEGEIVGIIGLNGSGKSTLSNLIAGVTMPN----KG 79 (549)
T ss_pred ccccccceeEEEEEEEecCCCccceEEeeeEEEE----------eCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----ce
Confidence 3444445678888888887753 24899999998 899999999999999999999999998754 56
Q ss_pred ceEEEecc
Q 019312 93 KMQVYKGL 100 (343)
Q Consensus 93 s~qvy~gl 100 (343)
.+. +.|.
T Consensus 80 eI~-I~G~ 86 (549)
T PRK13545 80 TVD-IKGS 86 (549)
T ss_pred EEE-ECCE
Confidence 663 4453
No 368
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.3e-06 Score=85.84 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=55.9
Q ss_pred cccCCCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 5 LFSPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
-|.+|.|..-.|| .+-+.+|+|.||...| .+.++++-+ .-...|+|+||||+|||||++.|.+.+.
T Consensus 573 kF~FPep~~L~PP---vLGlH~VtFgy~gqkp-LFkkldFGi----------DmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 573 KFQFPEPTKLNPP---VLGLHDVTFGYPGQKP-LFKKLDFGI----------DMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred EEecCCCCCCCCC---eeecccccccCCCCCc-hhhcccccc----------cccceeEEECCCCccHHHHHHHHhcCCC
Confidence 4778888888887 4568899999998776 667777665 4456899999999999999999999887
Q ss_pred CC
Q 019312 85 PS 86 (343)
Q Consensus 85 ~~ 86 (343)
|.
T Consensus 639 P~ 640 (807)
T KOG0066|consen 639 PN 640 (807)
T ss_pred CC
Confidence 64
No 369
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.16 E-value=3.6e-06 Score=86.73 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=51.5
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.-+++.+++. ..++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|
T Consensus 267 ~~l~~~~l~~-------~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~----~G~i~-~~g 324 (510)
T PRK15439 267 PVLTVEDLTG-------EGFRNISLEV----------RAGEILGLAGVVGAGRTELAETLYGLRPAR----GGRIM-LNG 324 (510)
T ss_pred ceEEEeCCCC-------CCccceeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CcEEE-ECC
Confidence 3477778873 1589999998 889999999999999999999999988754 67784 777
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 325 ~~i~~ 329 (510)
T PRK15439 325 KEINA 329 (510)
T ss_pred EECCC
Confidence 77753
No 370
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.16 E-value=9.9e-07 Score=72.56 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=30.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CeEEEecce
Confidence 589999999999999999999998 888888874
No 371
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.7e-06 Score=87.40 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=51.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++. .+++++++++ .+|++++|+||||||||||++.|++..+|. .|++ .|.|.
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i----------~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~----~G~i-~~~g~ 315 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSV----------RAGEIVGLFGLVGAGRSELMKLLYGATRRT----AGQV-YLDGK 315 (501)
T ss_pred EEEEeccccC------CcccceeEEE----------eCCcEEEEEcCCCCCHHHHHHHHcCCCcCC----CceE-EECCE
Confidence 4667777642 3789999998 899999999999999999999999998754 6888 47777
Q ss_pred cccC
Q 019312 101 DITT 104 (343)
Q Consensus 101 ~I~T 104 (343)
++..
T Consensus 316 ~~~~ 319 (501)
T PRK11288 316 PIDI 319 (501)
T ss_pred ECCC
Confidence 7643
No 372
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.16 E-value=2.4e-06 Score=80.97 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=41.3
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++++++++ .+|.+++|+||||||||||++.|++.++|. .|++. +.|
T Consensus 37 ~~il~~is~~i----------~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~----~G~I~-~~g 85 (264)
T PRK13546 37 FFALDDISLKA----------YEGDVIGLVGINGSGKSTLSNIIGGSLSPT----VGKVD-RNG 85 (264)
T ss_pred eEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ceEEE-ECC
Confidence 34889999998 899999999999999999999999998754 56663 444
No 373
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.15 E-value=4.3e-06 Score=82.99 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=57.5
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
=.++++.+|.|.|+... =.+--+++++ ++|+++.|+|-|||||||+++.|-+.+.|. +|.+ ...
T Consensus 320 ~~~lelrnvrfay~~~~-FhvgPiNl~i----------krGelvFliG~NGsGKST~~~LLtGL~~Pq----sG~I-~ld 383 (546)
T COG4615 320 WKTLELRNVRFAYQDNA-FHVGPINLTI----------KRGELVFLIGGNGSGKSTLAMLLTGLYQPQ----SGEI-LLD 383 (546)
T ss_pred ccceeeeeeeeccCccc-ceecceeeEE----------ecCcEEEEECCCCCcHHHHHHHHhcccCCC----CCce-eEC
Confidence 48999999999999654 2445677886 899999999999999999999999999865 6777 467
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.+|.
T Consensus 384 g~pV~ 388 (546)
T COG4615 384 GKPVS 388 (546)
T ss_pred CccCC
Confidence 77764
No 374
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=2.4e-06 Score=85.76 Aligned_cols=53 Identities=26% Similarity=0.437 Sum_probs=46.6
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN 105 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~ 105 (343)
+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.|.++...
T Consensus 43 ~L~~isl~i----------~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~----sG~I-~i~G~~i~~~ 95 (400)
T PRK10070 43 GVKDASLAI----------EEGEIFVIMGLSGSGKSTMVRLLNRLIEPT----RGQV-LIDGVDIAKI 95 (400)
T ss_pred EEEeEEEEE----------cCCCEEEEECCCCchHHHHHHHHHcCCCCC----CCEE-EECCEECCcC
Confidence 689999998 899999999999999999999999998754 7888 4888887643
No 375
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.15 E-value=3.1e-06 Score=77.35 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=49.4
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
..++=.|++ .-.+++++++++ .+|++++|+||||+||||+++.||..+.|. .|++ ...|.|+-
T Consensus 5 ~~l~K~y~~-~v~AvrdVSF~a----------e~Gei~GlLG~NGAGKTT~LRmiatlL~P~----~G~v-~idg~d~~ 67 (245)
T COG4555 5 TDLTKSYGS-KVQAVRDVSFEA----------EEGEITGLLGENGAGKTTLLRMIATLLIPD----SGKV-TIDGVDTV 67 (245)
T ss_pred eehhhhccC-HHhhhhheeEEe----------ccceEEEEEcCCCCCchhHHHHHHHhccCC----CceE-EEeecccc
Confidence 344444554 233789999998 999999999999999999999999999864 6777 35677653
No 376
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.4e-06 Score=88.39 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
-+++.++++.|.. ..+++++++++ .+|.+++|+||||||||||++.|++.+.|. .|++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~----~G~i 376 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLL----------EAGERLAIIGENGVGKTTLLRTLVGELEPD----SGTV 376 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE
Confidence 5888999998864 34899999998 899999999999999999999999988654 5666
No 377
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.14 E-value=2.2e-06 Score=88.45 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=47.1
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceE
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQ 95 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~q 95 (343)
++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.. .|. .|++.
T Consensus 2 ~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~----~G~i~ 60 (520)
T TIGR03269 2 EVKNLTKKFDG--KEVLKNISFTI----------EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT----SGRII 60 (520)
T ss_pred EEEEEEEEECC--eEeeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhhcccCCCC----ceEEE
Confidence 56778888853 34899999998 889999999999999999999999986 333 56664
No 378
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.14 E-value=2.2e-06 Score=90.74 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+++.++++.|.. ..++.++++++ .+|.+++|+||||||||||++.|++...|. .|++.
T Consensus 4 l~i~~ls~~~~~--~~il~~is~~i----------~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~----~G~I~ 61 (635)
T PRK11147 4 ISIHGAWLSFSD--APLLDNAELHI----------EDNERVCLVGRNGAGKSTLMKILNGEVLLD----DGRII 61 (635)
T ss_pred EEEeeEEEEeCC--ceeEeCcEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CeEEE
Confidence 677888888864 34899999998 889999999999999999999999987643 56663
No 379
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.13 E-value=3.2e-06 Score=89.48 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=50.5
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.-+++.++++.|.. ..+++++++++ .+|.+++|+||||||||||++.|++.+.|. .|++
T Consensus 318 ~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~----~G~i 376 (635)
T PRK11147 318 IVFEMENVNYQIDG--KQLVKDFSAQV----------QRGDKIALIGPNGCGKTTLLKLMLGQLQAD----SGRI 376 (635)
T ss_pred ceEEEeeeEEEECC--eEEEcCcEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEE
Confidence 45888999998864 34899999998 899999999999999999999999988754 5666
No 380
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.12 E-value=5.3e-06 Score=76.58 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCc---eecCCceEEEeccc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE---IINSDKMQVYKGLD 101 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e---IIs~Ds~qvy~gl~ 101 (343)
+..+|+|.|+|||||||+++.|...++ .+ +|+.|+. |++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~-~~~~~~I~~D~Y--Yk~~~ 50 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG-VEKVVVISLDDY--YKDQS 50 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC-cCcceEeecccc--ccchh
Confidence 357999999999999999999999998 44 8999999 88553
No 381
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=3.2e-06 Score=79.80 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=51.0
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEecccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKGLDI 102 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~gl~I 102 (343)
....++.|.. ..+++++++++ .+|++++|+|+||||||||++.|++.++|. .....|++ .+.|.++
T Consensus 11 ~~~~~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 77 (261)
T PRK14263 11 CKLDKIFYGN--FMAVRDSHVPI----------RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV-HFLGQDV 77 (261)
T ss_pred EEeEEEEeCC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE-EECCEec
Confidence 3444555542 33889999998 899999999999999999999999988641 11136888 4788777
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
..
T Consensus 78 ~~ 79 (261)
T PRK14263 78 YG 79 (261)
T ss_pred cc
Confidence 53
No 382
>PRK08356 hypothetical protein; Provisional
Probab=98.12 E-value=1.2e-05 Score=72.57 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+|+|+||+||||||++..|.+ ++ ..+|+.+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g-~~~is~~~~ 38 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KG-FCRVSCSDP 38 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CC-CcEEeCCCc
Confidence 35799999999999999999964 56 667777765
No 383
>PLN03130 ABC transporter C family member; Provisional
Probab=98.12 E-value=4.2e-06 Score=96.90 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=51.3
Q ss_pred ccceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 19 QQHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
...+++.+++|.|+.. .+.+|+++++++ ++|+.++|+||+|||||||++.|.+.+++.
T Consensus 612 ~~~I~~~nvsf~y~~~~~~~vL~~inl~i----------~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1622)
T PLN03130 612 LPAISIKNGYFSWDSKAERPTLSNINLDV----------PVGSLVAIVGSTGEGKTSLISAMLGELPPR 670 (1622)
T ss_pred CCceEEEeeEEEccCCCCCceeeceeEEe----------cCCCEEEEECCCCCCHHHHHHHHHHhhccC
Confidence 3579999999999864 244899999998 999999999999999999999999999854
No 384
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.11 E-value=2.5e-06 Score=84.11 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=47.3
Q ss_pred ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
++++.|... .+ ++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++..
T Consensus 4 ~l~~~~~~~---~~-~isl~i----------~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~----~G~I-~~~g~~i~~ 63 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTL----------PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD----EGEI-VLNGRTLFD 63 (354)
T ss_pred EEEEEECCE---EE-EEEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEECcc
Confidence 455555432 24 788887 889999999999999999999999998754 6888 477877753
No 385
>PRK04182 cytidylate kinase; Provisional
Probab=98.11 E-value=4.5e-06 Score=73.05 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=29.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+|++||||||+++.|++.++ .++++.|.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg-~~~id~~~~ 34 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG-LKHVSAGEI 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CcEecHHHH
Confidence 689999999999999999999998 888876654
No 386
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.11 E-value=4.1e-06 Score=86.06 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=51.4
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.+++. ..++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i----------~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~----~G~I-~~~g~ 314 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTL----------RKGEILGVSGLMGAGRTELMKVLYGALPRT----SGYV-TLDGH 314 (501)
T ss_pred EEEEeCccc-------CCcccceEEE----------cCCcEEEEecCCCCCHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence 466777763 2589999998 889999999999999999999999998754 6888 47787
Q ss_pred cccCC
Q 019312 101 DITTN 105 (343)
Q Consensus 101 ~I~T~ 105 (343)
++...
T Consensus 315 ~i~~~ 319 (501)
T PRK10762 315 EVVTR 319 (501)
T ss_pred ECCCC
Confidence 77543
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.11 E-value=4.2e-06 Score=84.78 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=65.4
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.+++=.||. --+++++++++ .+|++.+|+|-||+|||||++.|.+.+.|. +|.+ +.+|.
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v----------~~GeIHaLLGENGAGKSTLm~iL~G~~~P~----~GeI-~v~G~ 66 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSV----------KKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEI-RVDGK 66 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeee----------cCCcEEEEeccCCCCHHHHHHHHhCcccCC----cceE-EECCE
Confidence 4677777777872 33678999998 999999999999999999999999999875 7888 58899
Q ss_pred cccCCCCCccccccc
Q 019312 101 DITTNKIPSHKRHNV 115 (343)
Q Consensus 101 ~I~T~kp~~~e~~~i 115 (343)
.+.-..|..+-+.||
T Consensus 67 ~v~~~sP~dA~~~GI 81 (501)
T COG3845 67 EVRIKSPRDAIRLGI 81 (501)
T ss_pred EeccCCHHHHHHcCC
Confidence 888788887777666
No 388
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.11 E-value=6.7e-06 Score=76.90 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=64.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCC----CceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFP----SEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~----~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
+|+|+|+.||||||+++.|++.+.. ..+++.|.+. + .+.... + .+ ...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr---------------~-------~~~~~~--~-~~-e~~~~ 54 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR---------------E-------SFPVWK--E-KY-EEFIR 54 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH---------------H-------HhHHhh--H-Hh-HHHHH
Confidence 4789999999999999999998741 1223333220 0 000000 0 01 11223
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
......+....++|.. ||+.|+++| +...... +. +.......+++++++++.+.+.+|...|-+
T Consensus 55 ~~~~~~i~~~l~~~~~-VI~D~~~~~-~~~r~~l-------~~-------~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~ 118 (249)
T TIGR03574 55 DSTLYLIKTALKNKYS-VIVDDTNYY-NSMRRDL-------IN-------IAKEYNKNYIIIYLKAPLDTLLRRNIERGE 118 (249)
T ss_pred HHHHHHHHHHHhCCCe-EEEeccchH-HHHHHHH-------HH-------HHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence 3334566677777765 666666544 3222110 00 000112457789999999999999988853
No 389
>PLN03232 ABC transporter C family member; Provisional
Probab=98.10 E-value=4.6e-06 Score=96.03 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=50.8
Q ss_pred cceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 20 QHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
..+++.+++|.|+.. ...+|+++++++ ++|+.++|+||+|||||||++.|.+.+++.
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i----------~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEI----------PVGSLVAIVGGTGEGKTSLISAMLGELSHA 670 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 479999999999864 244899999998 999999999999999999999999998853
No 390
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.10 E-value=3.3e-06 Score=83.28 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=46.7
Q ss_pred ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
+++..|... . .++++++ .+|++++|+||||||||||++.|++..+|. .|++ .+.|.++.
T Consensus 5 ~l~k~~~~~---~-~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~----~G~I-~~~g~~~~ 63 (352)
T PRK11144 5 NFKQQLGDL---C-LTVNLTL----------PAQGITAIFGRSGAGKTSLINAISGLTRPQ----KGRI-VLNGRVLF 63 (352)
T ss_pred EEEEEeCCE---E-EEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEcc
Confidence 556666432 1 2788887 889999999999999999999999998754 6888 47787764
No 391
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.09 E-value=3.8e-06 Score=77.68 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=27.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCC------CceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFP------SEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~------~eIIs~Ds~ 94 (343)
+++|.||||||||||++.|+..+.+ ..+|+.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5899999999999999999998841 345667776
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.09 E-value=4.2e-06 Score=85.65 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=65.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.+++=+|+.- .+|+++++++ .+|++.+++|-||+|||||++.|++.++|. .|.+ .+.|.
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v----------~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~----~G~I-~~~G~ 70 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTV----------RPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEI-LIDGK 70 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEE----------eCceEEEEecCCCCCHHHHHHHHhCcccCC----CceE-EECCE
Confidence 45677888777754 4799999998 999999999999999999999999999865 7888 58898
Q ss_pred cccCCCCCccccccc
Q 019312 101 DITTNKIPSHKRHNV 115 (343)
Q Consensus 101 ~I~T~kp~~~e~~~i 115 (343)
.+.-..|...+..||
T Consensus 71 ~~~~~sp~~A~~~GI 85 (500)
T COG1129 71 PVAFSSPRDALAAGI 85 (500)
T ss_pred EccCCCHHHHHhCCc
Confidence 887777777777776
No 393
>PRK12338 hypothetical protein; Provisional
Probab=98.08 E-value=3.3e-05 Score=75.35 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee-cCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII-NSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII-s~Ds~ 94 (343)
++.+|+|.|++||||||+|..||+.++ ...+ +.|.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~-~~~~~~tD~~ 39 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN-IKHLIETDFI 39 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC-CeEEccChHH
Confidence 357999999999999999999999998 5544 66655
No 394
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.08 E-value=3.4e-06 Score=87.73 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=50.9
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.-+++.++++.|.. ..+++++++++ .+|.+++|+||||||||||++.|++.++|. .|++.
T Consensus 321 ~~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~----~G~i~ 380 (552)
T TIGR03719 321 KVIEAENLSKGFGD--KLLIDDLSFKL----------PPGGIVGVIGPNGAGKSTLFRMITGQEQPD----SGTIK 380 (552)
T ss_pred eEEEEeeEEEEECC--eeeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CeEEE
Confidence 35888899998864 24899999998 899999999999999999999999988754 56663
No 395
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=4.4e-06 Score=78.12 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=39.6
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+++++++ .+|..++|+|+||||||||++.||+.++|. .|++
T Consensus 42 aL~disf~i----------~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt----~G~v 84 (249)
T COG1134 42 ALKDISFEI----------YKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKV 84 (249)
T ss_pred EecCceEEE----------eCCCEEEEECCCCCcHHHHHHHHhCccCCC----CceE
Confidence 899999998 999999999999999999999999999875 5655
No 396
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.07 E-value=4.9e-06 Score=88.37 Aligned_cols=71 Identities=23% Similarity=0.170 Sum_probs=59.7
Q ss_pred ceeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 21 HYSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
-+++.++++.|+.+ ....|+++++++ .+|++++|+||||||||||++.|++..++. .|++ .|.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~ 68 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDI----------YAGEMVAIVGASGSGKSTLMNILGCLDKPT----SGTY-RVA 68 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EEC
Confidence 36788999999743 245899999998 899999999999999999999999998754 7888 588
Q ss_pred cccccCCC
Q 019312 99 GLDITTNK 106 (343)
Q Consensus 99 gl~I~T~k 106 (343)
|.++....
T Consensus 69 g~~i~~~~ 76 (648)
T PRK10535 69 GQDVATLD 76 (648)
T ss_pred CEEcCcCC
Confidence 88886543
No 397
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.07 E-value=3.8e-06 Score=87.51 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=51.1
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.-+++.++++.|... .+++++++++ .+|.+++|+||||||||||++.|++..+|. .|++.
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~----~G~i~ 382 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSL----------PPGGIVGIIGPNGAGKSTLFKMITGQEQPD----SGTIK 382 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE
Confidence 358889999988642 4899999998 899999999999999999999999988754 56663
No 398
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.06 E-value=5.3e-06 Score=75.35 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC--CceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP--SEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~--~eIIs~Ds~ 94 (343)
.++.+|+|+|++|||||||+..|++.++. ..+|+.|..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 56789999999999999999999999842 346777776
No 399
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.05 E-value=2.9e-06 Score=77.61 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=30.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+|+|+|+.||||||++..|.. ++ ..++++|.+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g-~~v~d~D~i 38 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MG-CELFEADRV 38 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CC-CeEEeccHH
Confidence 46899999999999999999997 56 788999866
No 400
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.04 E-value=9.1e-06 Score=84.34 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=53.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|. ....+.++++++ .+|..|+|+|+||+|||||++.|++...|. .|++...+++
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~----------~~G~riGLvG~NGaGKSTLLkilaG~~~~~----~G~i~~~~~~ 66 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTL----------NPGERIGLVGRNGAGKSTLLKILAGELEPD----SGEVTRPKGL 66 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCccee----------CCCCEEEEECCCCCCHHHHHHHHcCCCcCC----CCeEeecCCc
Confidence 467788888883 334889999998 899999999999999999999999998754 5766555554
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
.|+
T Consensus 67 ~v~ 69 (530)
T COG0488 67 RVG 69 (530)
T ss_pred eEE
Confidence 443
No 401
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.04 E-value=4.4e-05 Score=70.63 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|+||||||||||+..|++.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999999987
No 402
>PLN02200 adenylate kinase family protein
Probab=98.03 E-value=9.8e-06 Score=75.69 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+.+|+|+||+||||||++..|++.++ ...|+.|.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g-~~his~gdl 77 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG-FKHLSAGDL 77 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC-CeEEEccHH
Confidence 456889999999999999999999998 888888887
No 403
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.01 E-value=1e-05 Score=73.72 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=30.0
Q ss_pred EEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
|+|+||+||||||++..|++.++ ..+||.|.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g-~~~is~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG-LPHISTGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-CCeeehhHH
Confidence 78999999999999999999998 889999887
No 404
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.01 E-value=9e-06 Score=76.14 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=56.8
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.=+++.+|+..|..+ ..|.+++.++ ++++-++|+||||||||||++.++...+|. ++.+. .-|
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V----------~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps----sg~~~-~~G 92 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQV----------NPGEHWAIVGPNGAGKTTLLSLLTGEHPPS----SGDVT-LLG 92 (257)
T ss_pred ceEEecceEEEECCE--eeccccceee----------cCCCcEEEECCCCCCHHHHHHHHhcccCCC----CCcee-eee
Confidence 448899999998844 4799999998 999999999999999999999999998864 45554 346
Q ss_pred ccccCCCC
Q 019312 100 LDITTNKI 107 (343)
Q Consensus 100 l~I~T~kp 107 (343)
...+....
T Consensus 93 ~~~G~~~~ 100 (257)
T COG1119 93 RRFGKGET 100 (257)
T ss_pred eeccCCcc
Confidence 66654443
No 405
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.01 E-value=2.9e-05 Score=80.53 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
..+.+|+++|++||||||+++.++...+ ..+||.|.+. + +
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g-~~~vn~D~lg--------~------------------------------~- 406 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAG-YKHVNADTLG--------S------------------------------T- 406 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcC-CeEECcHHHH--------H------------------------------H-
Confidence 4578999999999999999999999877 7888888541 0 1
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV 215 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv 215 (343)
..+...+.+..++|+ +||+..|.+.-..-. .+ ..+.....+.+.+++++++.+++.+|+..|-
T Consensus 407 ~~~~~~a~~~L~~G~-sVVIDaTn~~~~~R~---------~~------i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 407 QNCLTACERALDQGK-RCAIDNTNPDAASRA---------KF------LQCARAAGIPCRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred HHHHHHHHHHHhCCC-cEEEECCCCCHHHHH---------HH------HHHHHHcCCeEEEEEeCCCHHHHHHHHHhhc
Confidence 112334555666777 577777765311100 00 0111223467888999999999999999884
No 406
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.00 E-value=6.8e-06 Score=84.76 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=58.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
++-..++|....+.-.+++++++.+ .+|++++|+|-|||||||++..|.+.+++..-+..|++ .|+|.+
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v----------~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~d 76 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEV----------EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRD 76 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEe----------cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcc
Confidence 3344555665544435889999998 99999999999999999999999999985436667999 699988
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 77 l~~l 80 (539)
T COG1123 77 LLGL 80 (539)
T ss_pred hhcC
Confidence 7543
No 407
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=8.8e-06 Score=81.28 Aligned_cols=71 Identities=24% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
...+.+.+.+|+|.|-+.+| .|.++++.. +.++.++|+||+|+||||+++.|.+.+++ ++|++.
T Consensus 258 ~~~g~v~F~~V~F~y~~~r~-iL~~isf~i----------~~g~tvAiVg~SG~gKsTI~rllfRFyD~----~sG~I~- 321 (497)
T COG5265 258 VRLGAVAFINVSFAYDPRRP-ILNGISFTI----------PLGKTVAIVGESGAGKSTILRLLFRFYDV----NSGSIT- 321 (497)
T ss_pred cccceEEEEEEEeeccccch-hhcCccccc----------cCccEEEEEeCCCCcHHHHHHHHHHHhCC----cCceEE-
Confidence 44577999999999998888 889999997 88999999999999999999999999983 489985
Q ss_pred Eeccccc
Q 019312 97 YKGLDIT 103 (343)
Q Consensus 97 y~gl~I~ 103 (343)
..|.||-
T Consensus 322 id~qdir 328 (497)
T COG5265 322 IDGQDIR 328 (497)
T ss_pred EcchhHH
Confidence 6777763
No 408
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.00 E-value=6.7e-06 Score=82.15 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=42.4
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.|.
T Consensus 39 ~l~~vsf~i----------~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~----~G~I-~idG~ 86 (382)
T TIGR03415 39 GVANASLDI----------EEGEICVLMGLSGSGKSSLLRAVNGLNPVS----RGSV-LVKDG 86 (382)
T ss_pred EEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEE-EECCE
Confidence 688999998 899999999999999999999999998754 7888 46664
No 409
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.99 E-value=3.4e-06 Score=73.63 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=68.6
Q ss_pred CcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHHHHH
Q 019312 68 TGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDII 147 (343)
Q Consensus 68 TGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~~i~ 147 (343)
.||||||+++.||+.++ .++|+.|... - +..+. +.-+... ..+...|++...+++.++.
T Consensus 1 ~GsGKStvg~~lA~~L~-~~fiD~D~~i-~-------------~~~g~-----si~~i~~-~~G~~~fr~~E~~~l~~l~ 59 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-RPFIDLDDEI-E-------------ERTGM-----SISEIFA-EEGEEAFRELESEALRELL 59 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-SEEEEHHHHH-H-------------HHHTS-----HHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhC-CCccccCHHH-H-------------HHhCC-----cHHHHHH-cCChHHHHHHHHHHHHHHh
Confidence 49999999999999999 8888888761 1 11110 0011111 3456788888889999999
Q ss_pred hcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 148 SRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 148 ~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
......|.+||....-.... +.. .-...+|||+.+.+.+.+|+..+-.
T Consensus 60 ~~~~~VIa~GGG~~~~~~~~--------~~L-------------~~~g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 60 KENNCVIACGGGIVLKEENR--------ELL-------------KENGLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp CSSSEEEEE-TTGGGSHHHH--------HHH-------------HHHSEEEEEE--HHHHHHHHHHHCT
T ss_pred ccCcEEEeCCCCCcCcHHHH--------HHH-------------HhCCEEEEEeCCHHHHHHHHhCCCC
Confidence 88777777877644211110 001 1134689999999999999977654
No 410
>PRK01184 hypothetical protein; Provisional
Probab=97.99 E-value=1.4e-05 Score=71.01 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=28.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+||.||||||+++ +++.++ ..+|+.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g-~~~i~~~d~ 34 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG-IPVVVMGDV 34 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC-CcEEEhhHH
Confidence 589999999999999987 778888 888887665
No 411
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.99 E-value=6.2e-06 Score=73.84 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=31.3
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la 80 (343)
.+++++++++ .+|.+++|+||||||||||++.+.
T Consensus 9 ~~l~~isl~i----------~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 9 HNLQNLDVSI----------PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHh
Confidence 3789999998 899999999999999999999885
No 412
>PLN03073 ABC transporter F family; Provisional
Probab=97.99 E-value=6.4e-06 Score=88.45 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=46.9
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
....+.+.++++.|.. .+ .+.++++++ .+|..++|+||||||||||++.|++..
T Consensus 174 ~~~~I~i~nls~~y~~-~~-ll~~isl~i----------~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 174 AIKDIHMENFSISVGG-RD-LIVDASVTL----------AFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred CceeEEEceEEEEeCC-CE-EEECCEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3466889999999963 33 899999998 899999999999999999999999753
No 413
>PRK14532 adenylate kinase; Provisional
Probab=97.98 E-value=1e-05 Score=72.06 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=30.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+||.||||||+++.||+.++ ..+|+.|.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-~~~is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-MVQLSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CeEEeCcHH
Confidence 378999999999999999999998 889999877
No 414
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.98 E-value=7.3e-06 Score=94.59 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=53.6
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+++.+++|.|+...+.+++++++++ ++|++++|+||||||||||++.|++.+++. .|++
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i----------~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~----~G~i 695 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSI----------PEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHV 695 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCccC----CcEE
Confidence 379999999999865555899999998 899999999999999999999999998753 4665
No 415
>PRK14531 adenylate kinase; Provisional
Probab=97.97 E-value=1.4e-05 Score=71.38 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=31.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..|+|+||.||||||++..|++.++ ...||.|.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g-~~~is~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG-LRHLSTGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCeEecccH
Confidence 4688999999999999999999998 889999877
No 416
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.96 E-value=2.8e-05 Score=72.54 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=31.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..|+|+||.||||||+++.||+.++ ..+||.|.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g-~~~is~gdl 40 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN-LKHINMGNI 40 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CcEEECChH
Confidence 4589999999999999999999999 899999998
No 417
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.3e-05 Score=72.45 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=45.9
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
...+.+++++. .+|+.+.|.||||||||||.+.||+.+.|. +|.+ .|++.+|.+
T Consensus 15 ~~lf~~L~f~l----------~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~----~G~v-~~~~~~i~~ 68 (209)
T COG4133 15 RTLFSDLSFTL----------NAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEV-YWQGEPIQN 68 (209)
T ss_pred ceeecceeEEE----------cCCCEEEEECCCCCcHHHHHHHHHcccCCC----CCeE-EecCCCCcc
Confidence 44677888887 889999999999999999999999999865 7888 477777754
No 418
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.95 E-value=1.9e-05 Score=68.67 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=30.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|.|++||||||+++.|++.++ .++++.|.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg-~~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-LKLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CceecHHHH
Confidence 689999999999999999999998 888888765
No 419
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.94 E-value=4.5e-05 Score=73.59 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC------CCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF------PSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~------~~eIIs~Ds~ 94 (343)
+.+.+|+|.|||||||||+++.|...+. ...+|+.|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4467999999999999999999887764 1335666665
No 420
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.93 E-value=8e-05 Score=65.63 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++++++|+|++||||||+++.|++.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999884
No 421
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.93 E-value=1.1e-05 Score=92.49 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=55.4
Q ss_pred eeecccCCcCC--cccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHP--KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.++ .+.+.+|+++++++ .+|++++|+||||||||||++.|++..+++ .+..|++ .+.|
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i----------~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g-~~~~G~I-~i~G 827 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWV----------KPGTLTALMGASGAGKTTLLNVLAERVTTG-VITGGDR-LVNG 827 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEE----------ECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CcceeEE-EECC
Confidence 56777777765 33456899999998 899999999999999999999999987622 2345888 4788
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 828 ~~~~ 831 (1394)
T TIGR00956 828 RPLD 831 (1394)
T ss_pred EECC
Confidence 7763
No 422
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.92 E-value=1.7e-05 Score=70.47 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=29.9
Q ss_pred EEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
|+|+||.||||||++..|++.++ ..+|+.|.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~-~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG-LPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-CeEEECcHH
Confidence 78999999999999999999998 888998877
No 423
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.92 E-value=1.2e-05 Score=72.29 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=28.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC--CCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF--PSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~--~~eIIs~Ds~ 94 (343)
+|+|+||+|||||||++.|++.++ ...+++.|..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 589999999999999999999873 2456777765
No 424
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=6.7e-05 Score=69.10 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=35.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+|+|=||+||||||+++.||+.++ ...++.|.| ||-+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg-~~yldTGam--YRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG-FHYLDTGAM--YRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC-CCeecccHH--HHHH
Confidence 6889999999999999999999999 999999999 8755
No 425
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.92 E-value=1.3e-05 Score=94.07 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=59.4
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.+++..|+.+...+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I----------~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt----sG~I-~i~G 991 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITF----------YENQITAFLGHNGAGKTTTLSILTGLLPPT----SGTV-LVGG 991 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEE----------cCCcEEEEECCCCChHHHHHHHHhcCCCCC----ceEE-EECC
Confidence 468888999999643345899999998 899999999999999999999999998755 6888 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++.+
T Consensus 992 ~dI~~ 996 (2272)
T TIGR01257 992 KDIET 996 (2272)
T ss_pred EECcc
Confidence 88753
No 426
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.91 E-value=1.3e-05 Score=65.78 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.9
Q ss_pred EEEEcCCcccHHHHHHHHHhhc
Q 019312 62 VVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~ 83 (343)
|+|.|++||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999996
No 427
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.91 E-value=1.2e-05 Score=74.07 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
+.+|++++|+||||||||||++.|++..++. .|++ .+.|.++
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~ 44 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPA----KGTV-KVAGASP 44 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCccc
Confidence 4689999999999999999999999988754 6777 4677654
No 428
>PRK06696 uridine kinase; Validated
Probab=97.91 E-value=1.7e-05 Score=73.07 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~ 94 (343)
..+.+|+|.|++||||||||..|+..++ +..+++.|.+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 4567999999999999999999999984 1234567777
No 429
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.91 E-value=1.1e-05 Score=78.05 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNK 106 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~k 106 (343)
..|++++|+|-||||||||.+++.+...|. +|++ .++|.||....
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept----~G~i-lv~g~di~~~~ 96 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPT----RGEI-LVDGKDIAKLS 96 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCC----CceE-EECCcchhcCC
Confidence 889999999999999999999999998865 8999 69999997544
No 430
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.91 E-value=6.4e-05 Score=68.53 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=28.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~ 94 (343)
+.+++|.|++||||||++..|+..++ .. +++.|.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~-~~~~~~~D~~ 38 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA-IDIVLSGDYL 38 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CeEEehhHHH
Confidence 56999999999999999999999987 44 4444433
No 431
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.89 E-value=7.4e-05 Score=69.31 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=34.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+|+|.||+||||||+++.|++.++ ..+++.|.+ |+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~-~~~~~~~~~--~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG-FHYLDTGAM--YRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-CCcccCchh--HHH
Confidence 46899999999999999999999999 888999987 664
No 432
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.88 E-value=2e-05 Score=70.62 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=47.0
Q ss_pred cCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 30 LHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
......-.+|+++++.+ .+++-++|+||||||||||+..||+.-.+. ++.+. .-|.+..
T Consensus 17 g~~~~~l~IL~~V~L~v----------~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s----sGeV~-l~G~~L~ 75 (228)
T COG4181 17 GQGEGELSILKGVELVV----------KRGETVAIVGPSGSGKSTLLAVLAGLDDPS----SGEVR-LLGQPLH 75 (228)
T ss_pred cCCCcceeEeecceEEe----------cCCceEEEEcCCCCcHHhHHHHHhcCCCCC----CceEE-EcCcchh
Confidence 34444456899999998 899999999999999999999999987643 67773 5566654
No 433
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.88 E-value=3.1e-06 Score=77.32 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=61.8
Q ss_pred cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccc
Q 019312 35 RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHN 114 (343)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~ 114 (343)
.+.+.+++++.+ .+|++++++||||+||||.-.++.+...|. +|++ ..++.||+....-...+.|
T Consensus 16 kr~Vv~~Vsl~v----------~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d----~G~i-~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 16 KRKVVNDVSLEV----------NSGEIVGLLGPNGAGKTTTFYMIVGLVRPD----SGKI-LLDDEDITKLPMHKRARLG 80 (243)
T ss_pred CeeeeeeeeEEE----------cCCcEEEEECCCCCCceeEEEEEEEEEecC----CceE-EECCcccccCChHHHhhcC
Confidence 455889999998 899999999999999999988888887754 7888 5889999865444444455
Q ss_pred cCccccccccCCCcccChhhhhh
Q 019312 115 VPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 115 i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
+-| |-+.-+... .+|+.+-..
T Consensus 81 igY-LpQE~SIFr-~LtV~dNi~ 101 (243)
T COG1137 81 IGY-LPQEASIFR-KLTVEDNIM 101 (243)
T ss_pred ccc-ccccchHhh-cCcHHHHHH
Confidence 533 333334444 455554443
No 434
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.88 E-value=1.2e-05 Score=66.48 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.1
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la 80 (343)
+++++++.+ .++++++|+||||||||||+..+.
T Consensus 4 aL~~vsl~i----------~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDV----------YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEE----------cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 678888887 788999999999999999999986
No 435
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.86 E-value=6.5e-05 Score=80.09 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=35.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
..+|+|.||+||||||+++.||+.++ .++++.|.+ |+.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~-~~~~~~~~~--~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG-YHYLDSGAL--YRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC-CeEecHHHh--hhHH
Confidence 45899999999999999999999999 999999988 8876
No 436
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.85 E-value=1.3e-05 Score=72.84 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC--CceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP--SEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~--~eIIs~Ds~ 94 (343)
+++.+++|+||||||||||++.|++.++. ..+++.|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 56889999999999999999999998862 345666665
No 437
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.85 E-value=1.9e-05 Score=92.70 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=59.4
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+.-+++.+++..|......+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I----------~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt----sG~I-~i~ 1999 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGV----------RPGECFGLLGVNGAGKTTTFKMLTGDTTVT----SGDA-TVA 1999 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEE----------cCCcEEEEECCCCCcHHHHHHHHhCCCCCC----ccEE-EEC
Confidence 4457888999888653344899999998 899999999999999999999999998754 7888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++.+
T Consensus 2000 G~~i~~ 2005 (2272)
T TIGR01257 2000 GKSILT 2005 (2272)
T ss_pred CEECcc
Confidence 888753
No 438
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.85 E-value=8.1e-05 Score=67.26 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=26.2
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..++.+++|+|++|||||||++.|++.+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36788999999999999999999999874
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=97.84 E-value=1.6e-05 Score=83.58 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=47.9
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.-+++.++++.|... .++.+++++ .+|++++|+||||||||||++.|++.+.|. .|++.
T Consensus 339 ~~l~~~~ls~~~~~~---~l~~~s~~i----------~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~----~G~I~ 397 (590)
T PRK13409 339 TLVEYPDLTKKLGDF---SLEVEGGEI----------YEGEVIGIVGPNGIGKTTFAKLLAGVLKPD----EGEVD 397 (590)
T ss_pred eEEEEcceEEEECCE---EEEecceEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE
Confidence 347888888877532 377888887 889999999999999999999999998754 56663
No 440
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.84 E-value=6.2e-06 Score=75.12 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=65.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec-c
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG-L 100 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g-l 100 (343)
+.+.+++-....+. +++++++++ .+|.+-+|+||||+||||++-.+.+..+|. .|+++ |.| .
T Consensus 6 L~~~~vsVsF~GF~--Aln~ls~~v----------~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~----~G~v~-f~g~~ 68 (249)
T COG4674 6 LYLDGVSVSFGGFK--ALNDLSFSV----------DPGELRVLIGPNGAGKTTLMDVITGKTRPQ----EGEVL-FDGDT 68 (249)
T ss_pred EEEeceEEEEccee--eeeeeEEEe----------cCCeEEEEECCCCCCceeeeeeecccCCCC----cceEE-EcCch
Confidence 34444443333332 588999998 899999999999999999999999998865 69996 555 8
Q ss_pred cccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312 101 DITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD 140 (343)
Q Consensus 101 ~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~ 140 (343)
|+....--.-.+.||-..| ..-...+ ..++.+-.+.|.
T Consensus 69 dl~~~~e~~IAr~GIGRKF-Q~PtVfe-~ltV~eNLelA~ 106 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKF-QKPTVFE-NLTVRENLELAL 106 (249)
T ss_pred hhccCCHHHHHHhccCccc-cCCeehh-hccHHHHHHHHh
Confidence 8864332222344554432 2223334 566666655553
No 441
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.83 E-value=3.4e-05 Score=67.39 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
...+-|.|.|..|+|||||+..||..++ .+.|+.+.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~-~~~i~isd~ 41 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTG-LEYIEISDL 41 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhC-CceEehhhH
Confidence 3456788999999999999999999998 777776655
No 442
>PRK13808 adenylate kinase; Provisional
Probab=97.83 E-value=2.7e-05 Score=76.35 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=30.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+||+||||||++..|++.++ ..+||.|.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg-l~~is~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG-IVQLSTGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CceecccHH
Confidence 378999999999999999999998 889999888
No 443
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.81 E-value=2.6e-05 Score=69.43 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=59.5
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccc-cccCccccccccCCCccc-Chhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR-HNVPHHLLGEFVPDDVEF-TPDDFRL 137 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~-~~i~h~li~~~~~~~~~~-s~~~f~~ 137 (343)
.+++|+|++|||||++|..++..++ .. + +| |.|+++..+|+ .+++||...- +. .| +...+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~-~~------~-~~----iat~~~~~~e~~~ri~~h~~~R--~~--~w~t~E~~~~ 65 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG-LQ------V-LY----IATAQPFDDEMAARIAHHRQRR--PA--HWQTVEEPLD 65 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC-CC------c-Ee----CcCCCCChHHHHHHHHHHHhcC--CC--CCeEeccccc
Confidence 4789999999999999999998865 22 1 23 66777877665 5788886543 22 23 3333332
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHh
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLV 168 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~ 168 (343)
..+.+......+. .|++.+...|+..++.
T Consensus 66 -l~~~i~~~~~~~~-~VlID~Lt~~~~n~l~ 94 (170)
T PRK05800 66 -LAELLRADAAPGR-CVLVDCLTTWVTNLLF 94 (170)
T ss_pred -HHHHHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence 3334555333444 5888888888776664
No 444
>PLN03211 ABC transporter G-25; Provisional
Probab=97.81 E-value=2e-05 Score=83.94 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=45.0
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
..+|+++++++ .+|++++|+||||||||||++.|++...+.. ..|++ .+.|.++.
T Consensus 81 ~~iL~~vs~~i----------~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~--~sG~I-~inG~~~~ 135 (659)
T PLN03211 81 RTILNGVTGMA----------SPGEILAVLGPSGSGKSTLLNALAGRIQGNN--FTGTI-LANNRKPT 135 (659)
T ss_pred CeeeeCCEEEE----------ECCEEEEEECCCCCCHHHHHHHHhCCCCCCc--eeEEE-EECCEECc
Confidence 34889999998 8999999999999999999999999876421 25777 47787763
No 445
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.81 E-value=6.5e-05 Score=67.26 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.+|+|.|+.||||||++..|++.+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999875
No 446
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.81 E-value=2.5e-05 Score=71.14 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=35.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
--+|+|.|.|-|||||||+.|.+.|+.+.+|+.|.. |+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF--yK 41 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF--YK 41 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccc--cC
Confidence 358999999999999999999999998999999999 76
No 447
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=97.81 E-value=3.9e-05 Score=79.18 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=61.7
Q ss_pred cCCCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 7 SPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
++|....--.|.|--+++..|++.-|+..+-...++++.+ +.|.-+.|+||||||||+|.+.|++..+-.
T Consensus 419 ~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V----------~~g~~LLItG~sG~GKtSLlRvlggLWp~~ 488 (659)
T KOG0060|consen 419 SLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEV----------PSGQNLLITGPSGCGKTSLLRVLGGLWPST 488 (659)
T ss_pred CCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEe----------cCCCeEEEECCCCCchhHHHHHHhcccccC
Confidence 3444455566888999999999999997555667799997 889999999999999999999999998732
Q ss_pred ceecCCceE
Q 019312 87 EIINSDKMQ 95 (343)
Q Consensus 87 eIIs~Ds~q 95 (343)
.|+++
T Consensus 489 ----~G~l~ 493 (659)
T KOG0060|consen 489 ----GGKLT 493 (659)
T ss_pred ----CCeEE
Confidence 56664
No 448
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.78 E-value=0.00019 Score=62.18 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=22.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+++|+|++||||||+++.|++.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999883
No 449
>PRK14528 adenylate kinase; Provisional
Probab=97.76 E-value=4.3e-05 Score=68.62 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.5
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.++|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~-~~~is~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS-IPQISTGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCeeeCCHH
Confidence 4688999999999999999999998 889999988
No 450
>PTZ00301 uridine kinase; Provisional
Probab=97.76 E-value=2.6e-05 Score=71.76 Aligned_cols=38 Identities=34% Similarity=0.648 Sum_probs=29.7
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC----C--CceecCCceEEEec
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF----P--SEIINSDKMQVYKG 99 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~----~--~eIIs~Ds~qvy~g 99 (343)
.+|+|.|||||||||||..|++.+. + ..+++.|.. |+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y--y~~ 47 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY--YRD 47 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC--ccC
Confidence 6899999999999999998876652 1 236777877 653
No 451
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.75 E-value=4.5e-05 Score=88.02 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=38.7
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+|+++++++ ++|++++|+||||||||||++.|++.+++. .|++.
T Consensus 441 ~l~~i~l~i----------~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~----~G~i~ 484 (1490)
T TIGR01271 441 VLKNISFKL----------EKGQLLAVAGSTGSGKSSLLMMIMGELEPS----EGKIK 484 (1490)
T ss_pred ceeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE
Confidence 788999997 899999999999999999999999998754 56663
No 452
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.74 E-value=3.4e-05 Score=71.34 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=46.5
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
..+++++++.+ .++.++.|+|-||+|||||+..+++.+.+. +|.+ ...|.||+
T Consensus 19 k~~l~~~sL~I----------~~g~FvtViGsNGAGKSTlln~iaG~l~~t----~G~I-~Idg~dVt 71 (263)
T COG1101 19 KRALNGLSLEI----------AEGDFVTVIGSNGAGKSTLLNAIAGDLKPT----SGQI-LIDGVDVT 71 (263)
T ss_pred HHHHhcCceee----------cCCceEEEEcCCCccHHHHHHHhhCccccC----CceE-EECceecc
Confidence 44899999998 899999999999999999999999998754 7777 57888885
No 453
>PLN02348 phosphoribulokinase
Probab=97.74 E-value=5.6e-05 Score=75.52 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++-+|+|.|++|||||||++.|+..++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999999986
No 454
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.73 E-value=3.6e-05 Score=69.22 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
+...|.++-++||||+|||||...+|+.++ + +|++| +.|.++..
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~----sGsi~-~~G~~l~~ 64 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTS-G----SGSIQ-FAGQPLEA 64 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCCC-C----CceEE-ECCcchhH
Confidence 446799999999999999999999999998 6 79996 88988753
No 455
>PRK13409 putative ATPase RIL; Provisional
Probab=97.73 E-value=2.3e-05 Score=82.44 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=39.1
Q ss_pred cCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 27 SPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
++.+|... .-+|++++ +. .+|++++|+||||||||||++.|++.+.|. .|.+
T Consensus 79 ~~~~yg~~-~~~L~~l~-~i----------~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~----~G~i 130 (590)
T PRK13409 79 PVHRYGVN-GFKLYGLP-IP----------KEGKVTGILGPNGIGKTTAVKILSGELIPN----LGDY 130 (590)
T ss_pred ceEEecCC-ceeEecCC-cC----------CCCCEEEEECCCCCCHHHHHHHHhCCccCC----Cccc
Confidence 44455421 12677776 44 889999999999999999999999998753 4555
No 456
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=4.3e-05 Score=69.17 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=40.1
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
+.+.++++. .++..++|+|.||||||||++.|++..+|. +|.+ .+.|.
T Consensus 28 AV~~vSFtL----------~~~QTlaiIG~NGSGKSTLakMlaGmi~PT----sG~i-l~n~~ 75 (267)
T COG4167 28 AVKPVSFTL----------REGQTLAIIGENGSGKSTLAKMLAGMIEPT----SGEI-LINDH 75 (267)
T ss_pred cccceEEEe----------cCCcEEEEEccCCCcHhHHHHHHhcccCCC----CceE-EECCc
Confidence 567888887 889999999999999999999999999875 5655 34443
No 457
>PRK02496 adk adenylate kinase; Provisional
Probab=97.73 E-value=3.7e-05 Score=68.32 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++|+||+||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~-~~~i~~~~~ 35 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH-IPHISTGDI 35 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEEhHHH
Confidence 588999999999999999999998 888888877
No 458
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.72 E-value=5.8e-05 Score=68.25 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+|+.||||||++..|+. ++ ..+|++|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g-~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LG-APVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC-CEEEEecHH
Confidence 5799999999999999999998 77 899999988
No 459
>PLN03140 ABC transporter G family member; Provisional
Probab=97.72 E-value=3.4e-05 Score=88.63 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=53.2
Q ss_pred ceeecccCCcCCc-----------ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 21 HYSSFYSPFLHPK-----------RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 21 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
++++.+|++..+. ++..+|+++++.+ .+|++++|+||||||||||++.|++...++. +
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i----------~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~-~ 935 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF----------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-I 935 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE----------ECCeEEEEECCCCCCHHHHHHHHcCCCCCCc-c
Confidence 6778888877643 2234788999997 8999999999999999999999999875332 2
Q ss_pred cCCceEEEecccc
Q 019312 90 NSDKMQVYKGLDI 102 (343)
Q Consensus 90 s~Ds~qvy~gl~I 102 (343)
.|.+. +.|.++
T Consensus 936 -~G~I~-inG~~~ 946 (1470)
T PLN03140 936 -EGDIR-ISGFPK 946 (1470)
T ss_pred -cceEE-ECCccC
Confidence 47773 777664
No 460
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.72 E-value=3e-05 Score=69.41 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=30.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+|..||||||++..|+...+ ..+|++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~-~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH-FPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-CeEEeCCHH
Confidence 489999999999999999999876 889999988
No 461
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.72 E-value=0.00036 Score=62.01 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..++.+++|+|++||||||+++.|++.+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999874
No 462
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.71 E-value=2.8e-05 Score=65.67 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=28.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~D 92 (343)
+|+|+|++||||||+++.|++.++ .++++.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~-~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG-LPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-Cceeccc
Confidence 589999999999999999999998 8888887
No 463
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.69 E-value=4.1e-05 Score=80.91 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=46.5
Q ss_pred cccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 33 KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.+...+|+++++.+ ++|++++|+||+|||||||++.|++...+. ....|++ .+.|.++.
T Consensus 35 ~~~~~iL~~vs~~i----------~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~-~~~~G~i-~~~g~~~~ 93 (617)
T TIGR00955 35 RPRKHLLKNVSGVA----------KPGELLAVMGSSGAGKTTLMNALAFRSPKG-VKGSGSV-LLNGMPID 93 (617)
T ss_pred cCccccccCCEEEE----------eCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcceeEE-EECCEECC
Confidence 33455899999998 899999999999999999999999987632 1124667 47787663
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.68 E-value=6.4e-05 Score=75.40 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=46.0
Q ss_pred ccceeecccCCcCCcccccccc-----------cceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWR-----------KTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
...+.|.+++|.||..+. +|. ++.+.+ .+|+.++|+||+|+|||||+..+++.+.
T Consensus 128 ~~ri~Fe~LTf~YP~er~-~Le~~~~~~~~R~id~~~pi----------g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 128 KNRVLFENLTPLYPNERL-RLETSTEDLSTRVLDLFAPI----------GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCeEEEEeeecCCCccc-eeecCccccceeeeeeEEEe----------CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 467999999999998763 563 444444 8999999999999999999999999865
No 465
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.67 E-value=0.00017 Score=75.67 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+|++||||||+++.|++.+.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 5678999999999999999999999987
No 466
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=6.9e-05 Score=67.69 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
++..++.=+|- .-.+|++++++. .+|.+|.|+|.|||||||+++++.-.-.|. +|.+ ...|..
T Consensus 7 l~v~dlHK~~G--~~eVLKGvSL~A----------~~GdVisIIGsSGSGKSTfLRCiN~LE~P~----~G~I-~v~gee 69 (256)
T COG4598 7 LEVEDLHKRYG--EHEVLKGVSLQA----------NAGDVISIIGSSGSGKSTFLRCINFLEKPS----AGSI-RVNGEE 69 (256)
T ss_pred eehhHHHhhcc--cchhhcceeeec----------CCCCEEEEecCCCCchhHHHHHHHhhcCCC----CceE-EECCeE
Confidence 34444444444 345899999998 899999999999999999999998776654 5666 344544
Q ss_pred c
Q 019312 102 I 102 (343)
Q Consensus 102 I 102 (343)
|
T Consensus 70 i 70 (256)
T COG4598 70 I 70 (256)
T ss_pred E
Confidence 4
No 467
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.64 E-value=3.4e-05 Score=69.24 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=30.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+||+||||||+|+.|++.++ ...||.|.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHH
Confidence 578999999999999999999988 888888887
No 468
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.63 E-value=5.7e-05 Score=70.99 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=53.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.+|+=.+.. ..+++++++.+ ++|++++++||||+||||..+.+.+.+.|. .|.+. ++|-+
T Consensus 3 L~ie~vtK~Fg~--k~av~~isf~v----------~~G~i~GllG~NGAGKTTtfRmILglle~~----~G~I~-~~g~~ 65 (300)
T COG4152 3 LEIEGVTKSFGD--KKAVDNISFEV----------PPGEIFGLLGPNGAGKTTTFRMILGLLEPT----EGEIT-WNGGP 65 (300)
T ss_pred eEEecchhccCc--eeeecceeeee----------cCCeEEEeecCCCCCccchHHHHhccCCcc----CceEE-EcCcc
Confidence 456666555543 34689999998 899999999999999999999999999865 68885 78877
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (300)
T COG4152 66 LSQ 68 (300)
T ss_pred hhh
Confidence 754
No 469
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.63 E-value=5.2e-05 Score=77.38 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=39.5
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
+|+++++++ .+|++++|+||||||||||++ +....+. +.+.+ .+.|.++..
T Consensus 21 vL~~Vsl~i----------~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I-~ldg~~~~~ 71 (504)
T TIGR03238 21 ILVKFNKEL----------PSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEF-FLDATHSFS 71 (504)
T ss_pred HHhCCceee----------cCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEE-EECCEECCC
Confidence 688999997 889999999999999999999 3333322 23357 478888864
No 470
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=7.6e-05 Score=66.87 Aligned_cols=56 Identities=23% Similarity=0.429 Sum_probs=45.0
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec----ccccCCCC
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG----LDITTNKI 107 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g----l~I~T~kp 107 (343)
++++++++++ +.|+.+++-||||+|||||++.|...+.+. .|++. .+. +|+.++.|
T Consensus 25 pV~~~vslsV----------~aGECvvL~G~SG~GKStllr~LYaNY~~d----~G~I~-v~H~g~~vdl~~a~p 84 (235)
T COG4778 25 PVLRNVSLSV----------NAGECVVLHGPSGSGKSTLLRSLYANYLPD----EGQIL-VRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeeceeEEe----------cCccEEEeeCCCCCcHHHHHHHHHhccCCC----CceEE-EEeCcchhhhhccCh
Confidence 3889999998 889999999999999999999999887644 67775 333 25555554
No 471
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00019 Score=66.69 Aligned_cols=127 Identities=19% Similarity=0.226 Sum_probs=79.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc--cCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI--TTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I--~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.+.++|.||+|+||+|++..|...++ + .. ++.+ +|..|...|..+..||+.+.-+... ...-..|+
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~-~------~~----~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s-~i~~~~fi 104 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELG-G------MF----GFSVSHTTRTPRAGEVHGKHYHFSTTEEFLS-MIKNNEFI 104 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcC-C------cc----eEEecCCCCCCCcccccCCcceeccHHHHHH-Hhhhhhhh
Confidence 47899999999999999999999987 3 11 4433 5667888888999999877655554 44445555
Q ss_pred hhhh----------HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEE-eCCHH
Q 019312 137 LQAD----------NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWV-DSSLQ 205 (343)
Q Consensus 137 ~~a~----------~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L-~~~re 205 (343)
+.+. .+++++...|+..|+- +...+ ..++.. ...+.+++++ +++-.
T Consensus 105 E~a~~~gn~yGtsi~av~~~~~~gk~~ild--------------------Id~qg--~~~i~~-~~~~~i~i~~~pps~~ 161 (231)
T KOG0707|consen 105 EFATFSGNKYGTSIAAVQRLMLSGKVCILD--------------------IDLQG--VQPIRA-TSLDAIYIFIKPPSIK 161 (231)
T ss_pred hhhhhhcccCCchHHHHHHHHhcCCcceee--------------------hhhcC--ceeeec-CCCceEEEEecCCcch
Confidence 4432 3444444444433221 11110 011111 1345555554 57789
Q ss_pred HHHHHHHHHHHHHHh
Q 019312 206 LLYDYLNKRVDDMLE 220 (343)
Q Consensus 206 ~L~~RI~~Rv~~Ml~ 220 (343)
.+.+|+.+|.-+|-.
T Consensus 162 ~~e~rl~~rgte~~~ 176 (231)
T KOG0707|consen 162 ILEERLRARGTETEE 176 (231)
T ss_pred hHHHHhhccCcchHH
Confidence 999999999766653
No 472
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.0012 Score=58.66 Aligned_cols=116 Identities=19% Similarity=0.314 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
.|.+|+||||||+||-||+-.....+. .. ..+.+.+ .+.|.... -.+-.|.- .+..+|..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~-~~----~r~~fvr--RvITRpa~---ag~EdH~a----------vs~~eF~~ 63 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLA-GR----PRLHFVR--RVITRPAD---AGGEDHDA----------LSEAEFNT 63 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhc-cC----CceEEEE--EEecccCC---CCcccccc----------cCHHHHHH
Confidence 589999999999999999988887776 31 1232221 22222111 11123322 22333332
Q ss_pred hhh------------------HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCC-ceEEE
Q 019312 138 QAD------------------NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRY-NCCFL 198 (343)
Q Consensus 138 ~a~------------------~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~-~~~~i 198 (343)
.+. ..|.+-.++|- .+|+-||--|+-..- .+| +..++
T Consensus 64 ~a~~g~FAlsWqAhGL~Ygip~eId~wl~~G~-vvl~NgSRa~Lp~ar-----------------------rry~~Llvv 119 (192)
T COG3709 64 RAGQGAFALSWQAHGLSYGIPAEIDLWLAAGD-VVLVNGSRAVLPQAR-----------------------RRYPQLLVV 119 (192)
T ss_pred HhhcCceeEEehhcCccccCchhHHHHHhCCC-EEEEeccHhhhHHHH-----------------------HhhhcceeE
Confidence 221 23555555666 467777765532221 123 34567
Q ss_pred EEeCCHHHHHHHHHHHHHH
Q 019312 199 WVDSSLQLLYDYLNKRVDD 217 (343)
Q Consensus 199 ~L~~~re~L~~RI~~Rv~~ 217 (343)
.+..+.++|.+|+..|-.+
T Consensus 120 ~ita~p~VLaqRL~~RGRE 138 (192)
T COG3709 120 CITASPEVLAQRLAERGRE 138 (192)
T ss_pred EEecCHHHHHHHHHHhccC
Confidence 8889999999999999754
No 473
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.62 E-value=8.6e-05 Score=67.89 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=30.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+||.||||||+++.||+.++ ..+||.|.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~-~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG-IPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEECCcc
Confidence 488999999999999999999999 899998877
No 474
>PRK07429 phosphoribulokinase; Provisional
Probab=97.61 E-value=0.00011 Score=71.97 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC--CceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP--SEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~--~eIIs~Ds~ 94 (343)
.+.-+|+|+|++||||||+++.|++.+++ ..+|+.|.+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 45679999999999999999999999873 235556654
No 475
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.61 E-value=4.2e-05 Score=70.73 Aligned_cols=31 Identities=35% Similarity=0.603 Sum_probs=28.3
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI 77 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~ 77 (343)
.+++++++++ .+|++++|+||||||||||+.
T Consensus 9 ~~l~~vsl~i----------~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 9 HNLKNVDVDI----------PRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred hccccceeec----------CCCcEEEEEcCCCCCHHHHHH
Confidence 3789999997 899999999999999999973
No 476
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=8.2e-05 Score=66.91 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=46.5
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.+++-.|. ....++++++.. .+|++++|+|.+|||||||..+|+..+.|. ++.+ .|+-
T Consensus 10 ~~lsk~Yg--~~~gc~~vsF~l----------~PGeVLgiVGESGSGKtTLL~~is~rl~p~----~G~v-~Y~~ 67 (258)
T COG4107 10 SGLSKLYG--PGKGCRDVSFDL----------YPGEVLGIVGESGSGKTTLLKCISGRLTPD----AGTV-TYRM 67 (258)
T ss_pred hhhhhhhC--CCcCccccceee----------cCCcEEEEEecCCCcHHhHHHHHhcccCCC----CCeE-EEEc
Confidence 34444444 234688999997 999999999999999999999999999865 6777 4764
No 477
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.60 E-value=0.00019 Score=64.22 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=62.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCc--eecCCceEEEecccccCCCCCcccccccCccccccc-cCCCccc--Chh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSE--IINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEF-VPDDVEF--TPD 133 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~e--IIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~-~~~~~~~--s~~ 133 (343)
+++|+|-|+|.||||||++.|...++ .+ .++.|++ ++.++-.... +..+.. .++.... ...
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f--~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~ 66 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTF--VDMMPPGRYR-----------PGDGLEPAGDRPDGGPLFR 66 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHH--HHHS-GGGGT-----------STTSEEEETTSEEE-HHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChH--HhhcCccccc-----------CCccccccccCCchhHHHH
Confidence 47899999999999999999999987 32 3444444 2212111000 000100 0000000 111
Q ss_pred hhhhhhhHHHHHHHhcCCeeEEEcCch---hhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312 134 DFRLQADNAISDIISRKKTPLLVGGSN---SFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY 210 (343)
Q Consensus 134 ~f~~~a~~~i~~i~~~g~~pIlvGGT~---lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R 210 (343)
.+.......|....+.|.. ||+.+-- ..++..+.. .+ ..+++.++++.||.++|.+|
T Consensus 67 ~~~~~~~~~iaa~a~aG~~-VIvD~v~~~~~~l~d~l~~-------~L------------~~~~vl~VgV~Cpleil~~R 126 (174)
T PF07931_consen 67 RLYAAMHAAIAAMARAGNN-VIVDDVFLGPRWLQDCLRR-------LL------------AGLPVLFVGVRCPLEILERR 126 (174)
T ss_dssp HHHHHHHHHHHHHHHTT-E-EEEEE--TTTHHHHHHHHH-------HH------------TTS-EEEEEEE--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-EEEecCccCcHHHHHHHHH-------Hh------------CCCceEEEEEECCHHHHHHH
Confidence 2223334566666666664 4544210 001111100 00 14678999999999999999
Q ss_pred HHHHHHHHH
Q 019312 211 LNKRVDDML 219 (343)
Q Consensus 211 I~~Rv~~Ml 219 (343)
=..|-|+..
T Consensus 127 E~~RgDR~~ 135 (174)
T PF07931_consen 127 ERARGDRPI 135 (174)
T ss_dssp HHHHTSSST
T ss_pred HHhcCCcch
Confidence 999998643
No 478
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.59 E-value=0.00015 Score=72.56 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCccceee--cccCCcCCccc---------ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHH
Q 019312 7 SPPTPACYHHQQQQHYSS--FYSPFLHPKRR---------RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGL 75 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStl 75 (343)
+-|..++++.|.++.+-+ .++.-.||... -.+.++++++. .+|+.++|+|.||||||||
T Consensus 260 aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L----------~~gqTlGlVGESGSGKsTl 329 (534)
T COG4172 260 AEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL----------RRGQTLGLVGESGSGKSTL 329 (534)
T ss_pred cCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEe----------cCCCeEEEEecCCCCcchH
Confidence 445555566666544333 34443333331 12456777776 8899999999999999999
Q ss_pred HHHHHhhcCCCceecCCceEEEecccccC
Q 019312 76 SIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 76 a~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
.++|.+.++ . .|.+ .|.|.+|..
T Consensus 330 G~allrL~~-s----~G~I-~F~G~~i~~ 352 (534)
T COG4172 330 GLALLRLIP-S----QGEI-RFDGQDIDG 352 (534)
T ss_pred HHHHHhhcC-c----CceE-EECCccccc
Confidence 999999998 3 5777 599998864
No 479
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.55 E-value=0.00028 Score=62.27 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=23.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+|+|.|+.||||||+++.|++.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999985
No 480
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.54 E-value=0.00012 Score=76.58 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+|+|.||||||||||++.|++.++...+|+.|..
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 469999999999999999999999864567777775
No 481
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.53 E-value=8.3e-05 Score=85.31 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=45.1
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
..+|+++++.+ .+|++++|+||||||||||++.|++...+......|++ .|.|.++.
T Consensus 74 ~~iL~~vs~~i----------~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I-~~~G~~~~ 130 (1394)
T TIGR00956 74 FDILKPMDGLI----------KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI-TYDGITPE 130 (1394)
T ss_pred ceeeeCCEEEE----------ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE-EECCEehH
Confidence 34788888887 89999999999999999999999998631111236888 48888774
No 482
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.53 E-value=0.00051 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=23.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
|.+|-|+|.+||||||||..|.+.+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999885
No 483
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.52 E-value=0.00014 Score=76.11 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=52.4
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
+..+++.+++...|.+. ..++..++.+ ++|.-+.|.|+||||||||.++||+.-|-+
T Consensus 390 ~~~i~~~nl~l~~p~~~-~ll~~l~~~v----------~~G~~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TLLSELNFEV----------RPGERLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred cceeEEeeeeEECCCCC-eeeccceeee----------CCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence 68999999999999988 4889999997 899999999999999999999999998843
No 484
>PRK14526 adenylate kinase; Provisional
Probab=97.52 E-value=0.00026 Score=65.20 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=31.9
Q ss_pred EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++|+||.||||||++..|++.++ ...||.|.+ +..++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~-~~~is~G~l-lr~~~ 39 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN-YYHISTGDL-FRENI 39 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CceeecChH-HHHhc
Confidence 77999999999999999999998 888999988 34444
No 485
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.51 E-value=8.5e-05 Score=70.80 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=40.5
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+..++++.+ ++|.+++++||||+||||+++.|.+.+.|. +|.+. ..|.+
T Consensus 39 AVqdisf~I----------P~G~ivgflGaNGAGKSTtLKmLTGll~p~----~G~v~-V~G~~ 87 (325)
T COG4586 39 AVQDISFEI----------PKGEIVGFLGANGAGKSTTLKMLTGLLLPT----SGKVR-VNGKD 87 (325)
T ss_pred hhheeeeec----------CCCcEEEEEcCCCCcchhhHHHHhCccccC----CCeEE-ecCcC
Confidence 567888886 899999999999999999999999998765 67774 44543
No 486
>PLN03140 ABC transporter G family member; Provisional
Probab=97.51 E-value=8.2e-05 Score=85.62 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=46.9
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN 105 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~ 105 (343)
..+|+++++.+ ++|++++|+||||||||||++.|++.+++. .-..|++ .|.|.++...
T Consensus 178 ~~IL~~vs~~i----------~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~-~~~~G~I-~~nG~~~~~~ 235 (1470)
T PLN03140 178 LTILKDASGII----------KPSRMTLLLGPPSSGKTTLLLALAGKLDPS-LKVSGEI-TYNGYRLNEF 235 (1470)
T ss_pred ceeccCCeEEE----------eCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-CcceeEE-EECCEechhh
Confidence 34788888887 899999999999999999999999998742 1125778 4888887543
No 487
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.50 E-value=0.00062 Score=73.25 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=35.8
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
.+|+|.||+||||||+++.||+.++ ...++.|.+ |+.+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~-~~~~~~g~~--~r~~~ 40 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG-YAYLDTGAM--YRACA 40 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CcEeecCcE--eHHHH
Confidence 3789999999999999999999999 899999998 88765
No 488
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.00018 Score=81.51 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCccceeecccCCcCCc-ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPK-RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+.+..+++.+.+|.... ..+..|+++++.+ ++|++++|+||+|||||+|+.++.+.++.. .|++.
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i----------~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~----sG~v~ 579 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEI----------KKGQLVAVVGPVGSGKSSLLSAILGEMPKL----SGSVA 579 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEe----------cCCCEEEEECCCCCCHHHHHHHHhcCcccc----cceEE
Confidence 44567889999998765 3344999999998 999999999999999999999999998843 56665
Q ss_pred EEe
Q 019312 96 VYK 98 (343)
Q Consensus 96 vy~ 98 (343)
+..
T Consensus 580 v~g 582 (1381)
T KOG0054|consen 580 VNG 582 (1381)
T ss_pred EcC
Confidence 443
No 489
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.00013 Score=77.23 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=52.2
Q ss_pred CCCccceeecccCCcCCcc---cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312 16 HQQQQHYSSFYSPFLHPKR---RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92 (343)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D 92 (343)
......+.+.+++...+.. ....|++++-.. .+|++.+|+||+|||||||+..||+..+.+-.+ .|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~----------~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~-~G 88 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTA----------KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKL-SG 88 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEE----------ecCeEEEEECCCCCCHHHHHHHHhccccCCCcc-eE
Confidence 3334555666666666555 356889999887 889999999999999999999999998732111 45
Q ss_pred ceEEEec
Q 019312 93 KMQVYKG 99 (343)
Q Consensus 93 s~qvy~g 99 (343)
++ .+.|
T Consensus 89 ~i-lvNG 94 (613)
T KOG0061|consen 89 EI-LLNG 94 (613)
T ss_pred EE-EECC
Confidence 55 3555
No 490
>PRK07667 uridine kinase; Provisional
Probab=97.47 E-value=0.00016 Score=65.25 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=30.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~ 94 (343)
..+|+|.|++||||||++..|+..+. +..+++.|..
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 47999999999999999999999874 2447777776
No 491
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.47 E-value=0.00023 Score=71.19 Aligned_cols=88 Identities=13% Similarity=0.228 Sum_probs=68.7
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~g 99 (343)
++.-..|.|....+...+++++++.+ ..|+.++|+|.||||||-.+..+.+.++. +.+--++++ .|.|
T Consensus 8 ~v~nLsV~f~~~~~~~~aVk~isf~i----------~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G 76 (534)
T COG4172 8 SIRNLSVAFHQEGGTVEAVKGISFDI----------EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDG 76 (534)
T ss_pred eeeccEEEEecCCcceEeeccceeee----------cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcC
Confidence 34556788888888888999999998 99999999999999999999999999972 234446788 5999
Q ss_pred ccccCCCCCcccccccCccccc
Q 019312 100 LDITTNKIPSHKRHNVPHHLLG 121 (343)
Q Consensus 100 l~I~T~kp~~~e~~~i~h~li~ 121 (343)
.|+.... +.++.++...-++
T Consensus 77 ~dll~~s--e~~lr~iRG~~I~ 96 (534)
T COG4172 77 EDLLAAS--ERQLRGVRGNKIG 96 (534)
T ss_pred hhhhcCC--HHHHhhhcccceE
Confidence 9987543 4556666544443
No 492
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.47 E-value=0.00057 Score=69.78 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce-EEEecc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM-QVYKGL 100 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~-qvy~gl 100 (343)
++.+|+|+|+|||||||++..||..++...||+.|.+ ++++++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 4789999999999999999999999983348899985 444444
No 493
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.46 E-value=0.00011 Score=59.38 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=24.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..++|+||+||||||+++.++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 56899999999999999999999987
No 494
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.45 E-value=0.00015 Score=66.96 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=60.8
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
..++-|.-+.++-.+.++|+++. +.|++-+++|.+|||||-+|+.+.+.....=+|.+|.+. +.+.+..
T Consensus 8 nL~IE~~TsqG~vK~VD~v~ltl----------nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~R-f~~idLL 76 (330)
T COG4170 8 NLTIEFKTSQGWVKAVDRVSMTL----------NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMR-FDDIDLL 76 (330)
T ss_pred ceEEEEecCCCceEeeeeeeeee----------ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcc-cccchhh
Confidence 34445556666667889999998 889999999999999999999999988755688899994 7777775
Q ss_pred CCCCCccccccc
Q 019312 104 TNKIPSHKRHNV 115 (343)
Q Consensus 104 T~kp~~~e~~~i 115 (343)
...| .+++.+
T Consensus 77 ~L~P--r~RRk~ 86 (330)
T COG4170 77 RLSP--RERRKL 86 (330)
T ss_pred cCCh--HHhhhh
Confidence 4433 344433
No 495
>PLN02459 probable adenylate kinase
Probab=97.43 E-value=0.00044 Score=65.74 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=31.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..++|+||.||||||++..|++.++ ...||.|.+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~-~~~is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG-VPHIATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CcEEeCcHH
Confidence 4578899999999999999999998 889999988
No 496
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.39 E-value=0.00014 Score=65.89 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++ +++|+||||||||||+.+|+..++
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence 567 999999999999999999998875
No 497
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.38 E-value=0.00013 Score=65.30 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
..+..++|+|||||||||+++.|++.+++
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 56899999999999999999999998874
No 498
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=97.37 E-value=0.00023 Score=65.60 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
....++.|+..+..|.|+..-| .+...++.. +.+....++|.||+|||||++.|++..-
T Consensus 7 ~~~~~~aievsgl~f~y~~~dP-~~~Dfnldl----------p~gsRcLlVGaNGaGKtTlLKiLsGKhm 65 (291)
T KOG2355|consen 7 EAVSDFAIEVSGLQFKYKVSDP-IFFDFNLDL----------PAGSRCLLVGANGAGKTTLLKILSGKHM 65 (291)
T ss_pred hhcccceEEEeccEEecccCCc-eEEEEeecc----------CCCceEEEEecCCCchhhhHHHhcCccc
Confidence 4456889999999999999887 556788886 7788999999999999999999998753
No 499
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.36 E-value=0.00013 Score=65.60 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=23.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+|+|.||+||||||||..|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999997
No 500
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.36 E-value=0.00019 Score=73.81 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=47.8
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
.+-+.+|+|+|...+ -.+.++++.+ ..+..++++||||+|||||++.+...+.|.
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgi----------d~~srvAlVGPNG~GKsTLlKl~~gdl~p~ 443 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGI----------DLDSRVALVGPNGAGKSTLLKLITGDLQPT 443 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhccc----------CcccceeEecCCCCchhhhHHHHhhccccc
Confidence 567889999999876 5778888886 778999999999999999999999888754
Done!