Query 019312
Match_columns 343
No_of_seqs 322 out of 2940
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a8t_A Adenylate isopentenyltr 100.0 5.9E-63 2E-67 479.3 24.5 284 57-343 38-339 (339)
2 3eph_A TRNA isopentenyltransfe 100.0 1.1E-61 3.9E-66 479.7 19.7 266 59-343 2-329 (409)
3 3exa_A TRNA delta(2)-isopenten 100.0 2.9E-57 1E-61 435.3 23.0 230 59-309 3-291 (322)
4 3foz_A TRNA delta(2)-isopenten 100.0 6.5E-57 2.2E-61 432.2 20.8 233 58-310 9-300 (316)
5 3crm_A TRNA delta(2)-isopenten 100.0 1.6E-50 5.3E-55 390.7 22.6 231 59-309 5-305 (323)
6 3d3q_A TRNA delta(2)-isopenten 100.0 2E-47 6.7E-52 371.2 21.0 227 60-307 8-295 (340)
7 2ze6_A Isopentenyl transferase 100.0 1.4E-28 4.9E-33 228.8 18.6 208 60-294 2-219 (253)
8 2qmh_A HPR kinase/phosphorylas 99.3 6E-13 2E-17 120.1 2.6 75 57-140 32-113 (205)
9 3tau_A Guanylate kinase, GMP k 99.2 1.2E-12 4E-17 117.3 1.7 124 57-215 6-142 (208)
10 1ex7_A Guanylate kinase; subst 99.2 6.3E-12 2.1E-16 112.1 5.8 124 60-215 2-136 (186)
11 3ney_A 55 kDa erythrocyte memb 99.2 1.9E-11 6.4E-16 110.0 7.9 91 57-157 17-117 (197)
12 3vaa_A Shikimate kinase, SK; s 99.0 9.3E-11 3.2E-15 103.8 3.1 123 38-212 14-136 (199)
13 3tr0_A Guanylate kinase, GMP k 99.0 4.5E-10 1.5E-14 98.7 6.8 125 57-214 5-139 (205)
14 3nh6_A ATP-binding cassette SU 99.0 3.3E-10 1.1E-14 108.3 6.0 72 18-105 50-121 (306)
15 3lnc_A Guanylate kinase, GMP k 99.0 2E-10 7E-15 103.8 3.0 63 39-121 17-80 (231)
16 2ff7_A Alpha-hemolysin translo 98.9 5.3E-10 1.8E-14 103.4 4.4 70 19-103 5-74 (247)
17 2ixe_A Antigen peptide transpo 98.9 9.6E-10 3.3E-14 103.1 6.1 71 19-104 14-85 (271)
18 3nwj_A ATSK2; P loop, shikimat 98.9 4.8E-10 1.6E-14 104.2 3.2 140 21-213 17-161 (250)
19 2qor_A Guanylate kinase; phosp 98.9 3.2E-09 1.1E-13 94.2 7.6 128 57-215 10-148 (204)
20 3a00_A Guanylate kinase, GMP k 98.9 6.3E-10 2.2E-14 97.5 2.8 127 59-216 1-137 (186)
21 1kgd_A CASK, peripheral plasma 98.9 1.4E-09 4.8E-14 94.9 4.6 91 57-157 3-103 (180)
22 1mv5_A LMRA, multidrug resista 98.8 2.9E-09 1E-13 97.9 6.5 67 22-104 2-68 (243)
23 3tif_A Uncharacterized ABC tra 98.8 1.2E-09 4E-14 100.3 3.6 69 22-105 2-72 (235)
24 3gfo_A Cobalt import ATP-bindi 98.8 1.5E-09 5.2E-14 102.1 4.4 67 21-103 7-73 (275)
25 4f4c_A Multidrug resistance pr 98.8 2E-09 6.9E-14 120.5 5.7 76 15-105 1070-1146(1321)
26 3trf_A Shikimate kinase, SK; a 98.8 2.4E-09 8.2E-14 92.8 4.7 112 58-211 4-115 (185)
27 1sgw_A Putative ABC transporte 98.8 1.8E-09 6.1E-14 98.0 3.9 71 15-103 4-74 (214)
28 1z47_A CYSA, putative ABC-tran 98.8 2.8E-09 9.7E-14 103.8 5.6 77 12-104 5-81 (355)
29 3qf4_A ABC transporter, ATP-bi 98.8 3.2E-09 1.1E-13 109.5 5.6 74 17-105 337-410 (587)
30 4a82_A Cystic fibrosis transme 98.8 3.4E-09 1.1E-13 109.1 5.2 73 17-104 335-407 (578)
31 2olj_A Amino acid ABC transpor 98.8 4E-09 1.4E-13 98.5 4.7 66 21-103 24-89 (263)
32 1s96_A Guanylate kinase, GMP k 98.8 5.9E-09 2E-13 94.7 5.6 129 56-214 13-150 (219)
33 4g1u_C Hemin import ATP-bindin 98.8 4.1E-09 1.4E-13 98.5 4.6 68 21-105 11-78 (266)
34 1vpl_A ABC transporter, ATP-bi 98.8 3.9E-09 1.3E-13 98.2 4.3 67 20-103 14-80 (256)
35 2pze_A Cystic fibrosis transme 98.8 4.9E-09 1.7E-13 95.7 4.8 64 21-99 6-69 (229)
36 2pcj_A ABC transporter, lipopr 98.8 3.4E-09 1.2E-13 96.4 3.7 66 22-104 5-70 (224)
37 3tui_C Methionine import ATP-b 98.7 4.5E-09 1.5E-13 102.8 4.6 72 20-106 23-96 (366)
38 3fvq_A Fe(3+) IONS import ATP- 98.7 9.2E-09 3.1E-13 100.4 6.7 66 21-103 4-69 (359)
39 1b0u_A Histidine permease; ABC 98.7 4.5E-09 1.5E-13 97.9 4.2 66 21-103 6-71 (262)
40 3qf4_B Uncharacterized ABC tra 98.7 6.9E-09 2.4E-13 107.2 5.8 73 17-105 350-422 (598)
41 3b5x_A Lipid A export ATP-bind 98.7 1.1E-08 3.8E-13 105.2 7.1 71 19-104 339-409 (582)
42 1ji0_A ABC transporter; ATP bi 98.7 5.1E-09 1.8E-13 96.2 3.8 66 21-103 6-71 (240)
43 3gd7_A Fusion complex of cysti 98.7 8.1E-09 2.8E-13 101.8 5.0 73 17-105 15-87 (390)
44 2cbz_A Multidrug resistance-as 98.7 5.3E-09 1.8E-13 96.0 3.5 64 21-99 3-66 (237)
45 2yz2_A Putative ABC transporte 98.7 7.3E-09 2.5E-13 96.7 4.3 67 22-103 3-72 (266)
46 3b60_A Lipid A export ATP-bind 98.7 1.3E-08 4.4E-13 104.8 6.6 71 19-104 339-409 (582)
47 1g6h_A High-affinity branched- 98.7 5.5E-09 1.9E-13 96.9 3.5 66 21-103 7-72 (257)
48 2ghi_A Transport protein; mult 98.7 1.1E-08 3.9E-13 95.1 5.0 68 20-103 16-84 (260)
49 1knq_A Gluconate kinase; ALFA/ 98.7 5E-08 1.7E-12 83.7 8.5 37 57-94 6-42 (175)
50 2ihy_A ABC transporter, ATP-bi 98.7 9.2E-09 3.2E-13 96.8 4.0 66 21-103 21-86 (279)
51 3rlf_A Maltose/maltodextrin im 98.7 1.3E-08 4.4E-13 100.1 5.1 70 21-107 3-72 (381)
52 2onk_A Molybdate/tungstate ABC 98.7 1.9E-08 6.5E-13 92.7 5.8 63 22-104 2-64 (240)
53 4f4c_A Multidrug resistance pr 98.7 1.9E-08 6.3E-13 112.7 6.8 74 17-105 411-485 (1321)
54 2it1_A 362AA long hypothetical 98.6 1.8E-08 6.1E-13 98.4 5.5 67 22-105 4-70 (362)
55 2yl4_A ATP-binding cassette SU 98.6 1.5E-08 5.1E-13 104.6 5.0 71 19-104 338-410 (595)
56 3t61_A Gluconokinase; PSI-biol 98.6 9.5E-08 3.2E-12 84.1 9.4 36 58-94 17-52 (202)
57 2zu0_C Probable ATP-dependent 98.6 1E-08 3.4E-13 95.9 2.9 70 20-104 19-88 (267)
58 2yyz_A Sugar ABC transporter, 98.6 2.1E-08 7E-13 97.9 5.0 67 22-105 4-70 (359)
59 2d2e_A SUFC protein; ABC-ATPas 98.6 1.2E-08 4.3E-13 94.2 3.1 66 22-104 4-71 (250)
60 3d31_A Sulfate/molybdate ABC t 98.6 2.3E-08 7.9E-13 97.1 4.7 65 22-104 2-66 (348)
61 1v43_A Sugar-binding transport 98.6 2.3E-08 8E-13 97.9 4.7 68 21-105 11-78 (372)
62 1z6g_A Guanylate kinase; struc 98.6 4.4E-08 1.5E-12 88.3 5.7 64 37-119 11-74 (218)
63 4eun_A Thermoresistant glucoki 98.6 9.2E-08 3.1E-12 84.4 7.4 37 57-94 27-63 (200)
64 1oxx_K GLCV, glucose, ABC tran 98.6 2.5E-08 8.4E-13 97.1 3.9 68 22-104 4-71 (353)
65 3zvl_A Bifunctional polynucleo 98.6 3E-07 1E-11 90.9 11.7 104 57-216 256-359 (416)
66 1g29_1 MALK, maltose transport 98.6 2.8E-08 9.5E-13 97.3 4.1 66 22-104 4-69 (372)
67 3g5u_A MCG1178, multidrug resi 98.6 4.6E-08 1.6E-12 109.3 6.2 73 18-105 384-457 (1284)
68 2j41_A Guanylate kinase; GMP, 98.5 1.5E-07 5E-12 82.4 8.0 29 56-84 3-31 (207)
69 1ly1_A Polynucleotide kinase; 98.5 1.2E-07 4.1E-12 80.9 6.3 116 60-216 3-128 (181)
70 2nq2_C Hypothetical ABC transp 98.5 4E-08 1.4E-12 91.1 3.5 58 22-94 5-62 (253)
71 3g5u_A MCG1178, multidrug resi 98.5 8.1E-08 2.8E-12 107.3 6.6 74 17-105 1026-1100(1284)
72 2qt1_A Nicotinamide riboside k 98.5 5.2E-07 1.8E-11 79.7 10.2 42 53-94 15-56 (207)
73 2pjz_A Hypothetical protein ST 98.5 4.6E-08 1.6E-12 91.3 3.3 65 22-103 2-68 (263)
74 1qhx_A CPT, protein (chloramph 98.5 6.1E-07 2.1E-11 76.8 10.2 26 59-84 3-28 (178)
75 2c95_A Adenylate kinase 1; tra 98.5 1.6E-07 5.6E-12 81.4 6.3 37 57-94 7-43 (196)
76 4e22_A Cytidylate kinase; P-lo 98.5 3.7E-07 1.3E-11 83.9 8.9 37 57-94 25-61 (252)
77 1lvg_A Guanylate kinase, GMP k 98.5 2.5E-07 8.7E-12 81.9 7.5 56 57-121 2-57 (198)
78 1ukz_A Uridylate kinase; trans 98.5 6E-07 2E-11 78.8 9.8 37 57-94 13-49 (203)
79 2rhm_A Putative kinase; P-loop 98.5 2.2E-07 7.4E-12 80.4 6.8 37 57-94 3-39 (193)
80 2p5t_B PEZT; postsegregational 98.4 6.2E-07 2.1E-11 82.3 9.8 130 57-219 30-162 (253)
81 3iij_A Coilin-interacting nucl 98.4 2E-07 7E-12 80.4 5.7 37 57-94 9-45 (180)
82 2v9p_A Replication protein E1; 98.4 3.7E-08 1.3E-12 94.1 0.6 56 20-89 100-155 (305)
83 3a4m_A L-seryl-tRNA(SEC) kinas 98.4 9.1E-07 3.1E-11 81.6 9.5 114 58-215 3-121 (260)
84 2bbs_A Cystic fibrosis transme 98.4 1E-07 3.6E-12 90.2 3.1 58 19-94 38-95 (290)
85 1gvn_B Zeta; postsegregational 98.4 5.6E-07 1.9E-11 84.7 8.0 38 57-94 31-69 (287)
86 3uie_A Adenylyl-sulfate kinase 98.4 9.6E-07 3.3E-11 77.8 8.8 28 57-84 23-50 (200)
87 1zuh_A Shikimate kinase; alpha 98.4 5E-07 1.7E-11 77.0 6.3 111 59-214 7-117 (168)
88 2qi9_C Vitamin B12 import ATP- 98.4 2.1E-07 7.3E-12 86.1 4.1 60 22-103 5-64 (249)
89 1znw_A Guanylate kinase, GMP k 98.3 4E-07 1.4E-11 80.8 5.5 29 56-84 17-45 (207)
90 1via_A Shikimate kinase; struc 98.3 1.1E-07 3.9E-12 81.7 1.6 34 60-94 5-38 (175)
91 2iw3_A Elongation factor 3A; a 98.3 3.7E-07 1.3E-11 99.1 5.3 62 20-95 670-731 (986)
92 3lw7_A Adenylate kinase relate 98.3 2.7E-07 9.2E-12 77.7 3.3 33 60-94 2-34 (179)
93 2iyv_A Shikimate kinase, SK; t 98.3 2.3E-07 7.8E-12 80.2 2.9 34 60-94 3-36 (184)
94 2vli_A Antibiotic resistance p 98.3 1.5E-06 5E-11 74.6 7.9 32 57-89 3-34 (183)
95 1uj2_A Uridine-cytidine kinase 98.3 1.5E-06 5E-11 79.6 8.1 39 58-99 21-69 (252)
96 2jeo_A Uridine-cytidine kinase 98.3 3.1E-07 1.1E-11 83.7 3.5 39 36-84 12-50 (245)
97 1tev_A UMP-CMP kinase; ploop, 98.3 1.7E-06 5.9E-11 74.5 8.0 35 59-94 3-37 (196)
98 1e6c_A Shikimate kinase; phosp 98.3 3.2E-07 1.1E-11 78.1 3.2 34 60-94 3-36 (173)
99 2yvu_A Probable adenylyl-sulfa 98.3 6.5E-06 2.2E-10 71.3 11.3 28 57-84 11-38 (186)
100 2gza_A Type IV secretion syste 98.3 3.4E-07 1.2E-11 88.9 3.4 58 23-94 137-206 (361)
101 2pt5_A Shikimate kinase, SK; a 98.2 4E-07 1.4E-11 77.3 2.6 33 61-94 2-34 (168)
102 3fdi_A Uncharacterized protein 98.2 4E-06 1.4E-10 74.8 9.2 35 58-94 5-39 (201)
103 1htw_A HI0065; nucleotide-bind 98.2 5.8E-07 2E-11 77.6 2.9 51 37-103 21-71 (158)
104 1ltq_A Polynucleotide kinase; 98.2 2.5E-06 8.5E-11 79.5 7.4 119 60-215 3-127 (301)
105 2bwj_A Adenylate kinase 5; pho 98.2 1.9E-06 6.6E-11 74.8 6.0 36 58-94 11-46 (199)
106 3umf_A Adenylate kinase; rossm 98.1 1.9E-06 6.4E-11 78.3 4.2 39 55-94 25-63 (217)
107 2pt7_A CAG-ALFA; ATPase, prote 98.1 1.1E-06 3.7E-11 84.5 2.8 57 24-100 151-207 (330)
108 2bdt_A BH3686; alpha-beta prot 98.1 4E-06 1.4E-10 72.7 5.7 26 59-84 2-27 (189)
109 2pez_A Bifunctional 3'-phospho 98.1 7E-06 2.4E-10 70.6 7.1 27 57-83 3-29 (179)
110 1kjw_A Postsynaptic density pr 98.0 5.3E-06 1.8E-10 78.6 6.5 88 57-157 103-201 (295)
111 2f6r_A COA synthase, bifunctio 98.0 8E-06 2.7E-10 76.4 7.7 36 57-94 73-108 (281)
112 1kht_A Adenylate kinase; phosp 98.0 1E-05 3.5E-10 69.4 7.7 26 59-84 3-28 (192)
113 4eaq_A DTMP kinase, thymidylat 98.0 8.4E-06 2.9E-10 74.0 6.6 28 57-84 24-51 (229)
114 1zp6_A Hypothetical protein AT 98.0 3.4E-06 1.2E-10 72.9 3.6 29 56-84 6-34 (191)
115 1kag_A SKI, shikimate kinase I 98.0 2.2E-06 7.7E-11 72.9 2.4 35 59-94 4-38 (173)
116 1nks_A Adenylate kinase; therm 97.9 4.4E-06 1.5E-10 71.7 3.5 25 60-84 2-26 (194)
117 3asz_A Uridine kinase; cytidin 97.9 3.1E-06 1.1E-10 74.6 2.5 38 57-94 4-42 (211)
118 3euj_A Chromosome partition pr 97.9 9E-06 3.1E-10 82.1 5.9 51 38-104 19-69 (483)
119 4gp7_A Metallophosphoesterase; 97.9 6E-06 2E-10 71.2 3.8 24 57-80 7-30 (171)
120 1cke_A CK, MSSA, protein (cyti 97.9 4E-06 1.4E-10 74.5 2.7 35 59-94 5-39 (227)
121 3r20_A Cytidylate kinase; stru 97.9 2.8E-05 9.7E-10 71.3 8.3 40 58-100 8-47 (233)
122 3tvt_A Disks large 1 tumor sup 97.9 3.4E-06 1.2E-10 80.0 2.2 124 57-215 98-232 (292)
123 2dpy_A FLII, flagellum-specifi 97.9 6.9E-06 2.4E-10 81.9 4.4 54 20-85 130-183 (438)
124 3kb2_A SPBC2 prophage-derived 97.9 7.9E-06 2.7E-10 69.0 4.0 34 60-94 2-35 (173)
125 1yqt_A RNAse L inhibitor; ATP- 97.9 8.2E-06 2.8E-10 83.4 4.6 49 25-85 25-73 (538)
126 3hdt_A Putative kinase; struct 97.9 2.8E-05 9.5E-10 70.7 7.7 35 58-93 13-47 (223)
127 2eyu_A Twitching motility prot 97.8 6.7E-06 2.3E-10 76.4 3.4 58 23-102 7-64 (261)
128 3aez_A Pantothenate kinase; tr 97.8 2.2E-06 7.4E-11 81.8 -0.0 62 20-85 42-116 (312)
129 3bk7_A ABC transporter ATP-bin 97.8 1E-05 3.5E-10 83.8 5.1 49 25-85 95-143 (607)
130 1y63_A LMAJ004144AAA protein; 97.8 5.9E-06 2E-10 71.8 2.3 37 57-94 8-45 (184)
131 1sq5_A Pantothenate kinase; P- 97.8 3.9E-06 1.3E-10 79.4 0.8 61 20-84 36-105 (308)
132 3c8u_A Fructokinase; YP_612366 97.8 8.9E-06 3.1E-10 72.0 2.9 28 57-84 20-47 (208)
133 3cm0_A Adenylate kinase; ATP-b 97.8 6.4E-06 2.2E-10 70.8 1.9 36 58-94 3-38 (186)
134 3b9q_A Chloroplast SRP recepto 97.8 1.2E-05 4.1E-10 76.3 3.9 42 57-103 98-139 (302)
135 2bbw_A Adenylate kinase 4, AK4 97.8 8.9E-06 3E-10 73.8 2.7 42 58-101 26-67 (246)
136 3ozx_A RNAse L inhibitor; ATP 97.7 1.8E-05 6.1E-10 80.9 4.4 34 57-94 292-325 (538)
137 3bk7_A ABC transporter ATP-bin 97.7 2.2E-05 7.5E-10 81.4 4.9 58 20-94 356-413 (607)
138 1yqt_A RNAse L inhibitor; ATP- 97.7 2E-05 7E-10 80.4 4.5 57 21-94 287-343 (538)
139 2obl_A ESCN; ATPase, hydrolase 97.7 1.9E-05 6.4E-10 76.5 3.7 53 21-85 45-97 (347)
140 2if2_A Dephospho-COA kinase; a 97.7 1.3E-05 4.4E-10 70.2 2.3 33 60-94 2-34 (204)
141 1rj9_A FTSY, signal recognitio 97.7 3.3E-05 1.1E-09 73.3 5.3 42 57-103 100-141 (304)
142 1jjv_A Dephospho-COA kinase; P 97.7 1.3E-05 4.6E-10 70.3 2.2 33 60-94 3-35 (206)
143 1uf9_A TT1252 protein; P-loop, 97.7 1.6E-05 5.4E-10 69.1 2.5 36 57-94 6-41 (203)
144 2axn_A 6-phosphofructo-2-kinas 97.6 9.9E-05 3.4E-09 75.1 8.5 38 57-94 33-74 (520)
145 2og2_A Putative signal recogni 97.6 2.5E-05 8.7E-10 76.0 3.8 42 56-102 154-195 (359)
146 2kjq_A DNAA-related protein; s 97.6 0.00018 6.1E-09 60.9 8.6 27 58-84 35-61 (149)
147 3j16_B RLI1P; ribosome recycli 97.6 2.9E-05 1E-09 80.5 4.3 56 25-86 350-405 (608)
148 2cdn_A Adenylate kinase; phosp 97.6 2.4E-05 8.3E-10 68.4 3.0 37 57-94 18-54 (201)
149 2yhs_A FTSY, cell division pro 97.6 2.9E-05 9.8E-10 78.7 3.9 41 57-102 291-331 (503)
150 1qf9_A UMP/CMP kinase, protein 97.6 2.2E-05 7.5E-10 67.3 2.5 35 59-94 6-40 (194)
151 1zd8_A GTP:AMP phosphotransfer 97.6 2E-05 6.8E-10 70.5 2.4 37 57-94 5-41 (227)
152 2iw3_A Elongation factor 3A; a 97.6 2.8E-05 9.5E-10 84.5 3.8 50 20-81 434-483 (986)
153 1aky_A Adenylate kinase; ATP:A 97.6 2.3E-05 7.9E-10 69.7 2.7 37 57-94 2-38 (220)
154 2ehv_A Hypothetical protein PH 97.6 2.9E-05 1E-09 69.4 3.3 25 56-80 27-51 (251)
155 1p9r_A General secretion pathw 97.6 3E-05 1E-09 76.9 3.3 41 57-102 165-205 (418)
156 3j16_B RLI1P; ribosome recycli 97.6 4.2E-05 1.4E-09 79.3 4.4 30 57-86 101-130 (608)
157 2grj_A Dephospho-COA kinase; T 97.6 2.4E-05 8.2E-10 69.4 2.2 35 59-94 12-46 (192)
158 4a74_A DNA repair and recombin 97.5 2.9E-05 1E-09 68.5 2.7 29 56-84 22-50 (231)
159 2xkx_A Disks large homolog 4; 97.5 0.00018 6E-09 75.9 9.1 123 57-215 529-662 (721)
160 1zak_A Adenylate kinase; ATP:A 97.5 2.4E-05 8.2E-10 69.7 2.1 36 58-94 4-39 (222)
161 1vht_A Dephospho-COA kinase; s 97.5 3E-05 1E-09 68.8 2.6 34 59-94 4-37 (218)
162 2qag_B Septin-6, protein NEDD5 97.5 2.6E-05 9E-10 77.6 2.5 50 20-83 15-66 (427)
163 3e70_C DPA, signal recognition 97.5 4.1E-05 1.4E-09 73.5 3.7 42 57-103 127-168 (328)
164 3ake_A Cytidylate kinase; CMP 97.5 3.1E-05 1.1E-09 67.5 2.6 33 61-94 4-36 (208)
165 2npi_A Protein CLP1; CLP1-PCF1 97.5 8.6E-06 2.9E-10 81.8 -1.2 45 22-84 119-163 (460)
166 1q3t_A Cytidylate kinase; nucl 97.5 3.8E-05 1.3E-09 69.3 2.8 37 57-94 14-50 (236)
167 1cr0_A DNA primase/helicase; R 97.5 5.1E-05 1.8E-09 70.6 3.7 37 38-84 24-60 (296)
168 3fb4_A Adenylate kinase; psych 97.5 3.5E-05 1.2E-09 68.0 2.3 33 61-94 2-34 (216)
169 3tlx_A Adenylate kinase 2; str 97.5 3.8E-05 1.3E-09 70.0 2.6 37 57-94 27-63 (243)
170 3ozx_A RNAse L inhibitor; ATP 97.5 5.7E-05 2E-09 77.2 4.1 29 57-85 23-51 (538)
171 3ux8_A Excinuclease ABC, A sub 97.5 3.8E-05 1.3E-09 80.1 2.7 31 36-76 31-61 (670)
172 3dl0_A Adenylate kinase; phosp 97.5 3.8E-05 1.3E-09 67.9 2.3 33 61-94 2-34 (216)
173 3b85_A Phosphate starvation-in 97.5 4.3E-05 1.5E-09 68.6 2.6 33 57-94 20-52 (208)
174 3jvv_A Twitching mobility prot 97.5 2.9E-05 9.9E-10 75.4 1.5 28 57-84 121-148 (356)
175 3gmt_A Adenylate kinase; ssgci 97.5 6.5E-05 2.2E-09 68.8 3.7 34 60-94 9-42 (230)
176 1ye8_A Protein THEP1, hypothet 97.4 6.1E-05 2.1E-09 65.8 3.4 24 61-84 2-25 (178)
177 1rz3_A Hypothetical protein rb 97.4 6.7E-05 2.3E-09 66.1 3.7 28 57-84 20-47 (201)
178 1x6v_B Bifunctional 3'-phospho 97.4 0.00034 1.1E-08 72.8 9.4 26 58-83 51-76 (630)
179 3tsz_A Tight junction protein 97.4 0.00039 1.3E-08 68.3 9.2 101 57-214 230-330 (391)
180 2qm8_A GTPase/ATPase; G protei 97.4 5.3E-05 1.8E-09 72.8 2.8 65 23-104 31-95 (337)
181 1svm_A Large T antigen; AAA+ f 97.4 6.2E-05 2.1E-09 73.7 3.3 43 37-90 157-199 (377)
182 3ec2_A DNA replication protein 97.4 5.8E-05 2E-09 64.9 2.7 28 57-84 36-63 (180)
183 1lw7_A Transcriptional regulat 97.4 6.7E-05 2.3E-09 72.3 3.4 30 56-85 165-196 (365)
184 3ux8_A Excinuclease ABC, A sub 97.4 9.8E-05 3.4E-09 77.0 4.8 33 37-79 336-368 (670)
185 3be4_A Adenylate kinase; malar 97.4 5E-05 1.7E-09 67.6 2.1 36 58-94 4-39 (217)
186 1a7j_A Phosphoribulokinase; tr 97.4 2.7E-05 9.1E-10 73.3 0.2 38 57-94 3-44 (290)
187 1tq4_A IIGP1, interferon-induc 97.4 3.7E-05 1.3E-09 76.2 1.0 50 37-101 37-106 (413)
188 1pui_A ENGB, probable GTP-bind 97.4 3.5E-05 1.2E-09 67.1 0.7 47 22-83 4-50 (210)
189 2x8a_A Nuclear valosin-contain 97.3 5.2E-05 1.8E-09 70.6 1.8 39 34-84 31-69 (274)
190 3sr0_A Adenylate kinase; phosp 97.3 6.3E-05 2.2E-09 67.4 2.2 33 61-94 2-34 (206)
191 1ak2_A Adenylate kinase isoenz 97.3 8E-05 2.7E-09 67.0 2.8 37 57-94 14-50 (233)
192 2i3b_A HCR-ntpase, human cance 97.3 9.3E-05 3.2E-09 65.4 3.1 26 59-84 1-26 (189)
193 3sop_A Neuronal-specific septi 97.3 9.3E-05 3.2E-09 68.9 3.2 37 61-102 4-40 (270)
194 1tf7_A KAIC; homohexamer, hexa 97.3 7.5E-05 2.6E-09 75.7 2.7 37 38-84 27-66 (525)
195 3lv8_A DTMP kinase, thymidylat 97.3 0.00043 1.5E-08 63.4 7.6 28 57-84 25-52 (236)
196 3tqc_A Pantothenate kinase; bi 97.3 0.00011 3.8E-09 70.4 3.6 28 57-84 90-117 (321)
197 2wwf_A Thymidilate kinase, put 97.3 7.3E-05 2.5E-09 65.4 2.1 34 57-91 8-41 (212)
198 3ice_A Transcription terminati 97.3 0.00012 4.1E-09 72.2 3.7 54 19-83 131-198 (422)
199 2pbr_A DTMP kinase, thymidylat 97.3 0.00012 4E-09 62.8 3.3 31 61-92 2-35 (195)
200 3kta_A Chromosome segregation 97.3 0.00017 5.9E-09 61.7 4.3 27 57-84 25-51 (182)
201 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00013 4.4E-09 64.1 3.3 29 56-84 20-48 (235)
202 1c9k_A COBU, adenosylcobinamid 97.3 7.7E-05 2.6E-09 65.8 1.8 91 61-169 1-92 (180)
203 1e4v_A Adenylate kinase; trans 97.3 8.6E-05 3E-09 65.7 2.1 33 61-94 2-34 (214)
204 2jaq_A Deoxyguanosine kinase; 97.3 0.00017 6E-09 62.2 4.0 24 61-84 2-25 (205)
205 2xb4_A Adenylate kinase; ATP-b 97.2 9.6E-05 3.3E-09 66.2 2.3 33 61-94 2-34 (223)
206 4tmk_A Protein (thymidylate ki 97.2 0.00046 1.6E-08 62.1 6.8 27 58-84 2-28 (213)
207 2oap_1 GSPE-2, type II secreti 97.2 8E-05 2.7E-09 75.6 1.9 30 57-86 258-287 (511)
208 2v54_A DTMP kinase, thymidylat 97.2 0.00018 6.1E-09 62.5 3.9 27 58-84 3-29 (204)
209 1u0l_A Probable GTPase ENGC; p 97.2 0.00018 6E-09 67.8 4.0 43 57-104 167-212 (301)
210 2vp4_A Deoxynucleoside kinase; 97.2 0.00011 3.9E-09 66.0 2.6 26 57-82 18-43 (230)
211 2h92_A Cytidylate kinase; ross 97.2 0.0001 3.5E-09 65.1 2.2 35 59-94 3-37 (219)
212 2plr_A DTMP kinase, probable t 97.2 0.00018 6.1E-09 62.6 3.5 27 58-84 3-29 (213)
213 1ixz_A ATP-dependent metallopr 97.2 0.00014 4.8E-09 65.9 2.8 23 62-84 52-74 (254)
214 2yv5_A YJEQ protein; hydrolase 97.2 0.00026 9E-09 66.8 4.6 42 57-104 163-207 (302)
215 3szr_A Interferon-induced GTP- 97.2 4.6E-05 1.6E-09 78.9 -0.7 75 20-102 9-84 (608)
216 2ewv_A Twitching motility prot 97.2 0.00017 5.9E-09 70.1 3.4 29 56-84 133-161 (372)
217 1odf_A YGR205W, hypothetical 3 97.2 0.00021 7.2E-09 67.3 3.7 38 57-94 29-73 (290)
218 2f1r_A Molybdopterin-guanine d 97.1 0.00017 5.8E-09 62.8 2.7 25 60-84 3-27 (171)
219 3cr8_A Sulfate adenylyltranfer 97.1 0.00019 6.7E-09 73.5 3.4 30 56-85 366-395 (552)
220 4aby_A DNA repair protein RECN 97.1 0.00015 5.2E-09 70.4 2.5 36 38-84 50-85 (415)
221 2cvh_A DNA repair and recombin 97.1 0.00029 1E-08 61.6 3.9 26 56-81 17-42 (220)
222 1m7g_A Adenylylsulfate kinase; 97.1 0.00025 8.7E-09 62.6 3.5 28 57-84 23-50 (211)
223 1iy2_A ATP-dependent metallopr 97.1 0.00019 6.7E-09 66.1 2.8 23 62-84 76-98 (278)
224 3shw_A Tight junction protein 97.1 0.001 3.5E-08 66.8 8.2 98 57-210 222-319 (468)
225 1nn5_A Similar to deoxythymidy 97.1 0.00029 9.8E-09 61.6 3.6 28 57-84 7-34 (215)
226 1n0w_A DNA repair protein RAD5 97.0 0.00029 9.9E-09 62.6 3.2 27 56-82 21-47 (243)
227 4i1u_A Dephospho-COA kinase; s 97.0 0.0008 2.7E-08 60.7 6.1 34 59-94 9-42 (210)
228 1qhl_A Protein (cell division 97.0 7.1E-05 2.4E-09 68.3 -0.9 39 60-103 28-66 (227)
229 1t9h_A YLOQ, probable GTPase E 97.0 0.00019 6.6E-09 68.3 1.9 44 56-104 170-216 (307)
230 2z0h_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 59.6 3.8 23 61-83 2-24 (197)
231 3bos_A Putative DNA replicatio 97.0 0.0014 4.9E-08 57.5 7.2 27 58-84 51-77 (242)
232 1gtv_A TMK, thymidylate kinase 97.0 0.00024 8.2E-09 62.1 2.1 25 60-84 1-25 (214)
233 1m8p_A Sulfate adenylyltransfe 96.9 0.0034 1.2E-07 64.5 9.9 28 57-84 394-421 (573)
234 2o8b_B DNA mismatch repair pro 96.9 0.00069 2.3E-08 74.2 4.8 58 21-83 750-812 (1022)
235 1nlf_A Regulatory protein REPA 96.8 0.00046 1.6E-08 63.6 3.0 29 56-84 27-55 (279)
236 3thx_B DNA mismatch repair pro 96.8 0.00056 1.9E-08 74.0 3.8 37 36-82 660-696 (918)
237 2px0_A Flagellar biosynthesis 96.8 0.00061 2.1E-08 64.2 3.5 28 57-84 103-130 (296)
238 1vma_A Cell division protein F 96.8 0.00065 2.2E-08 64.5 3.7 28 57-84 102-129 (306)
239 2r6f_A Excinuclease ABC subuni 96.8 0.0006 2.1E-08 73.9 3.8 43 20-79 628-670 (972)
240 1zu4_A FTSY; GTPase, signal re 96.8 0.00062 2.1E-08 64.9 3.4 28 57-84 103-130 (320)
241 1lv7_A FTSH; alpha/beta domain 96.8 0.00089 3.1E-08 60.6 4.3 26 59-84 45-70 (257)
242 2vf7_A UVRA2, excinuclease ABC 96.8 0.00029 9.8E-09 75.6 1.1 47 20-83 501-548 (842)
243 1wb9_A DNA mismatch repair pro 96.8 0.00091 3.1E-08 71.4 4.9 36 37-83 596-631 (800)
244 2ygr_A Uvrabc system protein A 96.8 0.00091 3.1E-08 72.7 4.9 43 20-79 646-688 (993)
245 3cf0_A Transitional endoplasmi 96.8 0.00098 3.3E-08 62.3 4.5 32 57-89 47-78 (301)
246 2qag_C Septin-7; cell cycle, c 96.8 0.00077 2.6E-08 66.8 3.9 47 20-84 10-56 (418)
247 2rcn_A Probable GTPase ENGC; Y 96.7 0.00084 2.9E-08 65.2 4.0 27 58-84 214-240 (358)
248 1ewq_A DNA mismatch repair pro 96.7 0.0011 3.8E-08 70.4 5.3 49 20-83 549-600 (765)
249 1in4_A RUVB, holliday junction 96.7 0.00074 2.5E-08 64.2 3.4 48 34-84 29-76 (334)
250 1nij_A Hypothetical protein YJ 96.7 0.0007 2.4E-08 64.2 3.0 25 59-83 4-28 (318)
251 1p5z_B DCK, deoxycytidine kina 96.7 0.00059 2E-08 62.4 2.3 28 57-84 22-49 (263)
252 2dr3_A UPF0273 protein PH0284; 96.7 0.0008 2.7E-08 59.7 3.0 28 56-83 20-47 (247)
253 3tqf_A HPR(Ser) kinase; transf 96.7 0.00061 2.1E-08 60.0 2.1 41 57-99 14-54 (181)
254 3thx_A DNA mismatch repair pro 96.6 0.00097 3.3E-08 72.3 3.9 34 37-80 650-683 (934)
255 3t15_A Ribulose bisphosphate c 96.6 0.0015 5E-08 61.1 4.3 31 57-88 34-64 (293)
256 1jbk_A CLPB protein; beta barr 96.6 0.0014 4.9E-08 54.8 3.7 26 59-84 43-68 (195)
257 1xjc_A MOBB protein homolog; s 96.5 0.0013 4.6E-08 57.2 3.5 27 58-84 3-29 (169)
258 1pzn_A RAD51, DNA repair and r 96.5 0.00098 3.4E-08 64.2 2.9 29 55-83 127-155 (349)
259 1np6_A Molybdopterin-guanine d 96.5 0.0015 5E-08 57.0 3.7 26 59-84 6-31 (174)
260 2p65_A Hypothetical protein PF 96.5 0.0015 5.1E-08 54.9 3.5 26 59-84 43-68 (187)
261 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0013 4.5E-08 63.6 3.6 26 57-83 22-47 (365)
262 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0014 4.9E-08 55.2 3.3 25 59-83 23-47 (149)
263 3b9p_A CG5977-PA, isoform A; A 96.5 0.0019 6.5E-08 59.5 4.4 27 58-84 53-79 (297)
264 3h4m_A Proteasome-activating n 96.5 0.0021 7.3E-08 58.7 4.6 29 58-87 50-78 (285)
265 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0022 7.4E-08 57.6 4.5 27 58-84 38-64 (262)
266 2o5v_A DNA replication and rep 96.4 0.0016 5.6E-08 63.1 3.6 33 39-82 17-49 (359)
267 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00075 2.6E-08 65.6 0.9 35 196-233 291-328 (359)
268 1oix_A RAS-related protein RAB 96.4 0.0017 5.8E-08 56.0 3.1 25 60-84 30-54 (191)
269 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0019 6.6E-08 65.3 3.9 23 62-84 67-89 (499)
270 2w58_A DNAI, primosome compone 96.3 0.002 7E-08 55.8 3.5 25 60-84 55-79 (202)
271 1ls1_A Signal recognition part 96.3 0.002 6.8E-08 60.6 3.4 27 58-84 97-123 (295)
272 1tue_A Replication protein E1; 96.3 0.0033 1.1E-07 56.7 4.7 33 57-90 56-88 (212)
273 3ld9_A DTMP kinase, thymidylat 96.3 0.0022 7.4E-08 58.2 3.4 30 55-84 17-46 (223)
274 2f9l_A RAB11B, member RAS onco 96.3 0.0019 6.6E-08 55.8 3.0 24 60-83 6-29 (199)
275 4edh_A DTMP kinase, thymidylat 96.3 0.0022 7.4E-08 57.6 3.3 28 57-84 4-31 (213)
276 3hws_A ATP-dependent CLP prote 96.3 0.0022 7.4E-08 61.4 3.4 31 58-89 50-80 (363)
277 1g8f_A Sulfate adenylyltransfe 96.3 0.0023 7.9E-08 65.0 3.8 28 57-84 393-420 (511)
278 1w1w_A Structural maintenance 96.2 0.0026 9.1E-08 62.4 4.1 28 57-84 24-51 (430)
279 2ocp_A DGK, deoxyguanosine kin 96.2 0.0024 8.2E-08 57.4 3.4 26 59-84 2-27 (241)
280 3pih_A Uvrabc system protein A 96.2 0.0031 1.1E-07 68.2 4.6 29 38-76 599-627 (916)
281 3m6a_A ATP-dependent protease 96.2 0.0024 8.4E-08 65.0 3.7 27 58-84 107-133 (543)
282 3v9p_A DTMP kinase, thymidylat 96.2 0.0022 7.4E-08 58.3 3.0 28 57-84 23-50 (227)
283 1sxj_C Activator 1 40 kDa subu 96.2 0.001 3.4E-08 63.1 0.6 40 35-84 30-71 (340)
284 3k1j_A LON protease, ATP-depen 96.2 0.0013 4.3E-08 67.8 1.3 41 35-85 46-86 (604)
285 1d2n_A N-ethylmaleimide-sensit 96.1 0.0032 1.1E-07 57.5 3.7 27 58-84 63-89 (272)
286 1njg_A DNA polymerase III subu 96.1 0.0034 1.2E-07 54.3 3.5 26 59-84 45-70 (250)
287 3lda_A DNA repair protein RAD5 96.1 0.0025 8.6E-08 62.7 2.9 26 55-80 174-199 (400)
288 1e69_A Chromosome segregation 96.1 0.0026 8.7E-08 60.2 2.8 27 57-84 23-49 (322)
289 2r62_A Cell division protease 96.1 0.002 6.9E-08 58.4 2.0 25 60-84 45-69 (268)
290 1ofh_A ATP-dependent HSL prote 96.1 0.0038 1.3E-07 57.2 3.9 26 59-84 50-75 (310)
291 1um8_A ATP-dependent CLP prote 96.0 0.0033 1.1E-07 60.3 3.4 29 59-88 72-100 (376)
292 4fcw_A Chaperone protein CLPB; 96.0 0.0034 1.2E-07 57.9 3.5 26 59-84 47-72 (311)
293 2p67_A LAO/AO transport system 96.0 0.0025 8.5E-08 60.9 2.5 28 57-84 54-81 (341)
294 1f6b_A SAR1; gtpases, N-termin 96.0 0.0017 5.8E-08 56.4 1.2 43 27-81 5-47 (198)
295 1udx_A The GTP-binding protein 96.0 0.0034 1.2E-07 62.1 3.4 35 39-83 147-181 (416)
296 1tf7_A KAIC; homohexamer, hexa 96.0 0.003 1E-07 63.9 3.1 30 55-84 277-306 (525)
297 2vf7_A UVRA2, excinuclease ABC 96.0 0.003 1E-07 67.7 3.3 30 38-77 25-54 (842)
298 3n70_A Transport activator; si 96.0 0.0041 1.4E-07 51.6 3.3 26 59-84 24-49 (145)
299 3eie_A Vacuolar protein sortin 96.0 0.0052 1.8E-07 57.8 4.5 30 58-88 50-79 (322)
300 3syl_A Protein CBBX; photosynt 95.9 0.0042 1.4E-07 57.3 3.6 27 58-84 66-92 (309)
301 3tmk_A Thymidylate kinase; pho 95.9 0.0047 1.6E-07 55.7 3.7 28 57-84 3-30 (216)
302 3qks_A DNA double-strand break 95.9 0.0044 1.5E-07 54.8 3.3 26 59-84 23-48 (203)
303 2gj8_A MNME, tRNA modification 95.9 0.0041 1.4E-07 52.6 2.9 26 58-83 3-28 (172)
304 1ko7_A HPR kinase/phosphatase; 95.9 0.003 1E-07 60.2 2.3 39 58-98 143-181 (314)
305 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0063 2.1E-07 57.6 4.5 28 57-84 43-70 (322)
306 2wji_A Ferrous iron transport 95.8 0.0043 1.5E-07 51.9 3.0 23 60-82 4-26 (165)
307 2chg_A Replication factor C sm 95.8 0.0047 1.6E-07 52.9 3.2 24 61-84 40-63 (226)
308 2ygr_A Uvrabc system protein A 95.8 0.0037 1.3E-07 67.9 3.1 31 38-78 35-65 (993)
309 2r6f_A Excinuclease ABC subuni 95.8 0.0038 1.3E-07 67.7 3.1 32 37-78 32-63 (972)
310 3pqc_A Probable GTP-binding pr 95.8 0.0086 3E-07 50.5 4.8 26 58-83 22-47 (195)
311 1sxj_E Activator 1 40 kDa subu 95.8 0.0042 1.4E-07 58.5 3.0 22 62-83 39-60 (354)
312 2www_A Methylmalonic aciduria 95.8 0.0057 1.9E-07 58.7 4.0 27 58-84 73-99 (349)
313 4b4t_K 26S protease regulatory 95.8 0.0066 2.3E-07 60.3 4.6 33 57-90 204-236 (428)
314 3d8b_A Fidgetin-like protein 1 95.8 0.0067 2.3E-07 58.1 4.4 29 58-87 116-144 (357)
315 2wjg_A FEOB, ferrous iron tran 95.8 0.0054 1.9E-07 51.8 3.4 24 59-82 7-30 (188)
316 3pfi_A Holliday junction ATP-d 95.8 0.0062 2.1E-07 57.1 4.0 26 59-84 55-80 (338)
317 1ypw_A Transitional endoplasmi 95.8 0.0055 1.9E-07 65.3 4.1 29 56-84 235-263 (806)
318 2qby_A CDC6 homolog 1, cell di 95.7 0.0047 1.6E-07 58.0 3.2 27 57-83 43-69 (386)
319 3pih_A Uvrabc system protein A 95.7 0.0032 1.1E-07 68.1 2.2 31 38-78 13-43 (916)
320 3qkt_A DNA double-strand break 95.7 0.005 1.7E-07 58.6 3.3 23 59-81 23-45 (339)
321 3hr8_A Protein RECA; alpha and 95.7 0.0041 1.4E-07 60.3 2.7 29 55-83 57-85 (356)
322 4b4t_L 26S protease subunit RP 95.7 0.0074 2.5E-07 60.1 4.5 32 57-89 213-244 (437)
323 1l8q_A Chromosomal replication 95.7 0.0049 1.7E-07 57.7 3.1 26 58-83 36-61 (324)
324 1g41_A Heat shock protein HSLU 95.7 0.0051 1.7E-07 61.4 3.3 30 59-89 50-79 (444)
325 4b4t_M 26S protease regulatory 95.7 0.0077 2.6E-07 59.9 4.5 32 57-89 213-244 (434)
326 3co5_A Putative two-component 95.7 0.0024 8.4E-08 52.9 0.8 26 59-84 27-52 (143)
327 2zej_A Dardarin, leucine-rich 95.7 0.0044 1.5E-07 52.7 2.5 22 61-82 4-25 (184)
328 3kl4_A SRP54, signal recogniti 95.7 0.0047 1.6E-07 61.5 2.8 27 58-84 96-122 (433)
329 2qp9_X Vacuolar protein sortin 95.6 0.0075 2.6E-07 57.8 4.1 30 58-88 83-112 (355)
330 2qnr_A Septin-2, protein NEDD5 95.6 0.004 1.4E-07 58.5 2.1 21 62-82 21-41 (301)
331 2orw_A Thymidine kinase; TMTK, 95.6 0.0068 2.3E-07 52.8 3.4 25 59-83 3-27 (184)
332 1fnn_A CDC6P, cell division co 95.6 0.0072 2.5E-07 57.1 3.9 25 60-84 45-69 (389)
333 3vfd_A Spastin; ATPase, microt 95.6 0.0085 2.9E-07 57.8 4.3 29 59-88 148-176 (389)
334 1m2o_B GTP-binding protein SAR 95.6 0.0067 2.3E-07 52.1 3.2 25 58-82 22-46 (190)
335 4b4t_J 26S protease regulatory 95.5 0.0082 2.8E-07 59.2 4.1 33 57-90 180-212 (405)
336 3uk6_A RUVB-like 2; hexameric 95.5 0.0068 2.3E-07 57.3 3.4 26 59-84 70-95 (368)
337 2ce7_A Cell division protein F 95.5 0.0099 3.4E-07 59.7 4.6 28 60-88 50-77 (476)
338 2h57_A ADP-ribosylation factor 95.5 0.0048 1.7E-07 52.5 2.0 26 58-83 20-45 (190)
339 1sxj_A Activator 1 95 kDa subu 95.4 0.0094 3.2E-07 60.0 4.2 31 58-89 76-106 (516)
340 2zr9_A Protein RECA, recombina 95.4 0.0067 2.3E-07 58.4 3.0 29 55-83 57-85 (349)
341 2ged_A SR-beta, signal recogni 95.4 0.01 3.5E-07 50.4 3.8 27 57-83 46-72 (193)
342 2zts_A Putative uncharacterize 95.4 0.0077 2.6E-07 53.3 3.1 26 56-81 27-52 (251)
343 3llm_A ATP-dependent RNA helic 95.4 0.0092 3.1E-07 53.4 3.5 24 57-80 74-97 (235)
344 1ni3_A YCHF GTPase, YCHF GTP-b 95.3 0.0098 3.3E-07 58.4 3.9 27 56-82 17-43 (392)
345 2v1u_A Cell division control p 95.3 0.0078 2.7E-07 56.6 3.1 27 57-83 42-68 (387)
346 2qgz_A Helicase loader, putati 95.3 0.0093 3.2E-07 56.2 3.6 25 59-83 152-176 (308)
347 2dyk_A GTP-binding protein; GT 95.3 0.009 3.1E-07 48.8 3.1 24 60-83 2-25 (161)
348 4b4t_H 26S protease regulatory 95.3 0.01 3.6E-07 59.4 4.0 32 57-89 241-272 (467)
349 1hqc_A RUVB; extended AAA-ATPa 95.3 0.0071 2.4E-07 56.0 2.6 26 59-84 38-63 (324)
350 2lkc_A Translation initiation 95.3 0.012 4.2E-07 48.9 3.9 26 57-82 6-31 (178)
351 1v5w_A DMC1, meiotic recombina 95.3 0.0093 3.2E-07 57.0 3.4 28 55-82 118-145 (343)
352 2ffh_A Protein (FFH); SRP54, s 95.3 0.0087 3E-07 59.3 3.3 27 58-84 97-123 (425)
353 1z2a_A RAS-related protein RAB 95.3 0.0094 3.2E-07 48.9 3.0 23 60-82 6-28 (168)
354 2bjv_A PSP operon transcriptio 95.2 0.011 3.8E-07 53.5 3.7 26 59-84 29-54 (265)
355 2ce2_X GTPase HRAS; signaling 95.2 0.0093 3.2E-07 48.5 2.8 23 61-83 5-27 (166)
356 2h17_A ADP-ribosylation factor 95.2 0.0079 2.7E-07 50.8 2.5 26 57-82 19-44 (181)
357 1bif_A 6-phosphofructo-2-kinas 95.2 0.0056 1.9E-07 60.9 1.7 28 57-84 37-64 (469)
358 1zd9_A ADP-ribosylation factor 95.2 0.0093 3.2E-07 50.8 2.9 24 59-82 22-45 (188)
359 2gf9_A RAS-related protein RAB 95.2 0.013 4.3E-07 49.8 3.7 24 60-83 23-46 (189)
360 2r6a_A DNAB helicase, replicat 95.2 0.012 4.1E-07 58.3 3.9 29 56-84 200-228 (454)
361 1svi_A GTP-binding protein YSX 95.2 0.015 5.1E-07 49.3 4.1 25 58-82 22-46 (195)
362 1nrj_B SR-beta, signal recogni 95.2 0.013 4.5E-07 50.9 3.8 26 58-83 11-36 (218)
363 1kao_A RAP2A; GTP-binding prot 95.1 0.011 3.9E-07 48.1 3.1 23 60-82 4-26 (167)
364 1z0f_A RAB14, member RAS oncog 95.1 0.0099 3.4E-07 49.3 2.7 25 59-83 15-39 (179)
365 4b4t_I 26S protease regulatory 95.1 0.016 5.4E-07 57.7 4.5 32 57-89 214-245 (437)
366 1j8m_F SRP54, signal recogniti 95.1 0.0074 2.5E-07 56.8 2.1 26 59-84 98-123 (297)
367 2zan_A Vacuolar protein sortin 95.1 0.014 4.8E-07 57.7 4.2 28 57-84 165-192 (444)
368 2ius_A DNA translocase FTSK; n 95.1 0.048 1.7E-06 55.3 8.2 57 57-119 165-222 (512)
369 2qby_B CDC6 homolog 3, cell di 95.1 0.012 4.2E-07 55.6 3.6 26 58-83 44-69 (384)
370 1sxj_D Activator 1 41 kDa subu 95.1 0.011 3.8E-07 55.2 3.2 24 61-84 60-83 (353)
371 1u8z_A RAS-related protein RAL 95.0 0.012 4.1E-07 48.0 3.0 23 60-82 5-27 (168)
372 2wsm_A Hydrogenase expression/ 95.0 0.012 4.1E-07 51.3 3.2 27 58-84 29-55 (221)
373 3dm5_A SRP54, signal recogniti 95.0 0.011 3.8E-07 58.9 3.3 27 58-84 99-125 (443)
374 1z0j_A RAB-22, RAS-related pro 95.0 0.012 4.2E-07 48.3 3.1 24 60-83 7-30 (170)
375 3lxx_A GTPase IMAP family memb 95.0 0.011 3.8E-07 52.8 3.0 25 59-83 29-53 (239)
376 1ky3_A GTP-binding protein YPT 95.0 0.012 4.2E-07 48.9 3.1 25 59-83 8-32 (182)
377 2erx_A GTP-binding protein DI- 95.0 0.012 4.1E-07 48.3 3.0 23 60-82 4-26 (172)
378 1ek0_A Protein (GTP-binding pr 95.0 0.012 4.2E-07 48.1 3.0 23 61-83 5-27 (170)
379 2r44_A Uncharacterized protein 95.0 0.013 4.5E-07 54.8 3.5 26 59-84 46-71 (331)
380 3kkq_A RAS-related protein M-R 95.0 0.013 4.5E-07 49.1 3.2 24 59-82 18-41 (183)
381 2z43_A DNA repair and recombin 95.0 0.011 3.8E-07 55.8 3.0 29 55-83 103-131 (324)
382 1g16_A RAS-related protein SEC 95.0 0.012 4.1E-07 48.4 2.8 22 61-82 5-26 (170)
383 3bh0_A DNAB-like replicative h 95.0 0.014 4.9E-07 54.9 3.7 28 56-83 65-92 (315)
384 2fv8_A H6, RHO-related GTP-bin 95.0 0.009 3.1E-07 51.8 2.1 24 59-82 25-48 (207)
385 1ega_A Protein (GTP-binding pr 95.0 0.0094 3.2E-07 55.9 2.3 24 59-82 8-31 (301)
386 3t34_A Dynamin-related protein 94.9 0.016 5.6E-07 55.3 4.0 32 38-82 26-57 (360)
387 1z08_A RAS-related protein RAB 94.9 0.014 4.7E-07 48.1 3.1 23 60-82 7-29 (170)
388 1c1y_A RAS-related protein RAP 94.9 0.014 4.8E-07 47.8 3.0 22 61-82 5-26 (167)
389 4ad8_A DNA repair protein RECN 94.9 0.01 3.6E-07 59.7 2.6 27 57-84 59-85 (517)
390 2nzj_A GTP-binding protein REM 94.9 0.013 4.4E-07 48.5 2.8 23 60-82 5-27 (175)
391 2c9o_A RUVB-like 1; hexameric 94.9 0.017 5.7E-07 57.2 4.1 27 58-84 62-88 (456)
392 3pvs_A Replication-associated 94.9 0.016 5.6E-07 57.5 4.0 25 60-84 51-75 (447)
393 2a9k_A RAS-related protein RAL 94.9 0.013 4.5E-07 48.9 2.9 24 59-82 18-41 (187)
394 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.014 4.9E-07 48.4 3.1 23 60-82 8-30 (177)
395 3q85_A GTP-binding protein REM 94.9 0.013 4.5E-07 48.3 2.7 22 61-82 4-25 (169)
396 1xx6_A Thymidine kinase; NESG, 94.8 0.018 6E-07 50.8 3.7 27 57-83 6-32 (191)
397 1r2q_A RAS-related protein RAB 94.8 0.015 5.1E-07 47.6 3.0 23 60-82 7-29 (170)
398 2fn4_A P23, RAS-related protei 94.8 0.014 4.8E-07 48.4 2.9 24 59-82 9-32 (181)
399 2z4s_A Chromosomal replication 94.8 0.013 4.4E-07 57.9 3.0 25 59-83 130-154 (440)
400 2b8t_A Thymidine kinase; deoxy 94.8 0.016 5.6E-07 52.4 3.3 28 57-84 10-37 (223)
401 1upt_A ARL1, ADP-ribosylation 94.8 0.02 6.9E-07 47.1 3.7 25 58-82 6-30 (171)
402 1ypw_A Transitional endoplasmi 94.7 0.0098 3.4E-07 63.4 2.1 28 57-84 509-536 (806)
403 1g8p_A Magnesium-chelatase 38 94.7 0.01 3.6E-07 55.4 2.0 24 61-84 47-70 (350)
404 3hu3_A Transitional endoplasmi 94.7 0.022 7.5E-07 57.3 4.5 31 57-88 236-266 (489)
405 2hf9_A Probable hydrogenase ni 94.7 0.017 5.9E-07 50.5 3.2 27 58-84 37-63 (226)
406 4dsu_A GTPase KRAS, isoform 2B 94.7 0.017 5.9E-07 48.3 3.1 24 60-83 5-28 (189)
407 1w4r_A Thymidine kinase; type 94.7 0.027 9.2E-07 50.1 4.4 25 57-81 18-43 (195)
408 3bc1_A RAS-related protein RAB 94.7 0.017 5.9E-07 48.4 3.0 24 59-82 11-34 (195)
409 2i1q_A DNA repair and recombin 94.6 0.014 4.7E-07 54.8 2.6 28 55-82 94-121 (322)
410 3con_A GTPase NRAS; structural 94.6 0.017 5.9E-07 48.8 3.0 23 60-82 22-44 (190)
411 3clv_A RAB5 protein, putative; 94.6 0.018 6E-07 48.5 3.1 24 59-82 7-30 (208)
412 3tw8_B RAS-related protein RAB 94.6 0.014 4.7E-07 48.5 2.3 23 60-82 10-32 (181)
413 3pxg_A Negative regulator of g 94.6 0.02 7E-07 56.9 3.9 26 59-84 201-226 (468)
414 2y8e_A RAB-protein 6, GH09086P 94.6 0.017 5.7E-07 47.9 2.8 23 60-82 15-37 (179)
415 1r8s_A ADP-ribosylation factor 94.6 0.018 6.3E-07 47.1 3.0 22 61-82 2-23 (164)
416 1knx_A Probable HPR(Ser) kinas 94.6 0.02 7E-07 54.5 3.7 40 57-98 145-184 (312)
417 1z06_A RAS-related protein RAB 94.6 0.02 6.7E-07 48.6 3.3 23 60-82 21-43 (189)
418 3c5c_A RAS-like protein 12; GD 94.6 0.017 5.9E-07 49.2 2.9 24 59-82 21-44 (187)
419 3q72_A GTP-binding protein RAD 94.6 0.016 5.4E-07 47.6 2.6 23 60-82 3-25 (166)
420 2oil_A CATX-8, RAS-related pro 94.6 0.018 6.2E-07 48.9 3.0 24 60-83 26-49 (193)
421 3p32_A Probable GTPase RV1496/ 94.6 0.053 1.8E-06 51.8 6.6 27 57-83 77-103 (355)
422 3t1o_A Gliding protein MGLA; G 94.6 0.02 6.8E-07 48.2 3.2 25 60-84 15-39 (198)
423 3te6_A Regulatory protein SIR3 94.6 0.02 6.8E-07 54.6 3.5 28 57-84 43-70 (318)
424 2hxs_A RAB-26, RAS-related pro 94.6 0.019 6.6E-07 47.6 3.1 25 59-83 6-30 (178)
425 4ag6_A VIRB4 ATPase, type IV s 94.5 0.019 6.6E-07 55.3 3.5 26 58-83 34-59 (392)
426 3auy_A DNA double-strand break 94.5 0.017 5.8E-07 55.6 3.1 23 59-81 25-47 (371)
427 1ojl_A Transcriptional regulat 94.5 0.028 9.5E-07 52.7 4.5 26 59-84 25-50 (304)
428 2v3c_C SRP54, signal recogniti 94.5 0.013 4.5E-07 58.1 2.3 35 58-92 98-136 (432)
429 2bov_A RAla, RAS-related prote 94.5 0.02 6.7E-07 48.9 3.1 24 59-82 14-37 (206)
430 2cxx_A Probable GTP-binding pr 94.5 0.016 5.5E-07 48.7 2.4 22 61-82 3-24 (190)
431 2orv_A Thymidine kinase; TP4A 94.5 0.038 1.3E-06 50.5 5.0 27 57-83 17-43 (234)
432 1jr3_A DNA polymerase III subu 94.5 0.023 7.7E-07 53.5 3.6 26 59-84 38-63 (373)
433 2efe_B Small GTP-binding prote 94.4 0.021 7.2E-07 47.5 3.1 23 60-82 13-35 (181)
434 2j9r_A Thymidine kinase; TK1, 94.4 0.039 1.3E-06 49.8 4.9 27 57-83 26-52 (214)
435 2gks_A Bifunctional SAT/APS ki 94.4 0.021 7.2E-07 58.3 3.5 27 58-84 371-397 (546)
436 2bme_A RAB4A, RAS-related prot 94.4 0.02 6.9E-07 48.0 2.8 25 59-83 10-34 (186)
437 4bas_A ADP-ribosylation factor 94.4 0.016 5.5E-07 49.1 2.2 26 57-82 15-40 (199)
438 2g6b_A RAS-related protein RAB 94.3 0.022 7.6E-07 47.3 3.0 25 59-83 10-34 (180)
439 4hlc_A DTMP kinase, thymidylat 94.3 0.023 7.9E-07 50.4 3.2 26 59-84 2-27 (205)
440 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.023 7.8E-07 47.4 3.0 23 60-82 6-28 (186)
441 4dhe_A Probable GTP-binding pr 94.3 0.021 7E-07 49.7 2.8 26 58-83 28-53 (223)
442 2il1_A RAB12; G-protein, GDP, 94.3 0.019 6.4E-07 49.1 2.4 23 60-82 27-49 (192)
443 2gco_A H9, RHO-related GTP-bin 94.3 0.032 1.1E-06 48.0 3.9 24 60-83 26-49 (201)
444 1m7b_A RND3/RHOE small GTP-bin 94.3 0.022 7.6E-07 48.1 2.8 24 59-82 7-30 (184)
445 1gwn_A RHO-related GTP-binding 94.3 0.02 7E-07 49.9 2.7 24 59-82 28-51 (205)
446 1vg8_A RAS-related protein RAB 94.2 0.024 8.3E-07 48.4 3.1 25 59-83 8-32 (207)
447 1iqp_A RFCS; clamp loader, ext 94.2 0.029 1E-06 51.5 3.8 25 60-84 47-71 (327)
448 1dek_A Deoxynucleoside monopho 94.2 0.026 8.9E-07 51.7 3.4 34 60-94 2-35 (241)
449 3tkl_A RAS-related protein RAB 94.2 0.024 8.4E-07 47.9 3.0 24 60-83 17-40 (196)
450 3ihw_A Centg3; RAS, centaurin, 94.2 0.027 9.1E-07 48.0 3.3 24 59-82 20-43 (184)
451 1u94_A RECA protein, recombina 94.2 0.023 7.9E-07 54.8 3.2 28 56-83 60-87 (356)
452 1yrb_A ATP(GTP)binding protein 94.2 0.032 1.1E-06 50.0 3.9 27 57-83 12-38 (262)
453 1fzq_A ADP-ribosylation factor 94.2 0.021 7.2E-07 48.4 2.5 25 58-82 15-39 (181)
454 3u61_B DNA polymerase accessor 94.1 0.026 9E-07 52.5 3.3 26 59-84 48-73 (324)
455 1moz_A ARL1, ADP-ribosylation 94.1 0.018 6.3E-07 48.1 2.0 23 58-80 17-39 (183)
456 2gf0_A GTP-binding protein DI- 94.1 0.025 8.5E-07 47.9 2.9 24 59-82 8-31 (199)
457 2fg5_A RAB-22B, RAS-related pr 94.1 0.025 8.6E-07 48.2 2.9 24 60-83 24-47 (192)
458 2iwr_A Centaurin gamma 1; ANK 94.1 0.025 8.7E-07 47.1 2.9 23 60-82 8-30 (178)
459 3k53_A Ferrous iron transport 94.1 0.026 9E-07 51.5 3.2 23 60-82 4-26 (271)
460 3llu_A RAS-related GTP-binding 94.1 0.029 1E-06 48.0 3.3 28 57-84 18-45 (196)
461 3dz8_A RAS-related protein RAB 94.1 0.023 7.8E-07 48.3 2.5 25 59-83 23-47 (191)
462 3kfv_A Tight junction protein 94.1 0.13 4.3E-06 48.9 7.9 97 57-214 143-239 (308)
463 3t5g_A GTP-binding protein RHE 94.1 0.026 8.9E-07 47.2 2.8 23 59-81 6-28 (181)
464 2xxa_A Signal recognition part 94.1 0.027 9.2E-07 55.8 3.4 26 58-83 99-124 (433)
465 2q6t_A DNAB replication FORK h 94.0 0.031 1.1E-06 55.1 3.7 28 56-83 197-224 (444)
466 2a5j_A RAS-related protein RAB 94.0 0.028 9.6E-07 47.8 3.0 23 60-82 22-44 (191)
467 3bwd_D RAC-like GTP-binding pr 94.0 0.036 1.2E-06 46.1 3.7 24 59-82 8-31 (182)
468 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.02 7E-07 54.9 2.3 27 56-82 120-146 (331)
469 1ksh_A ARF-like protein 2; sma 94.0 0.028 9.6E-07 47.3 2.9 25 58-82 17-41 (186)
470 2atv_A RERG, RAS-like estrogen 94.0 0.029 1E-06 47.8 3.1 24 59-82 28-51 (196)
471 2p5s_A RAS and EF-hand domain 94.0 0.029 9.9E-07 48.1 3.0 26 58-83 27-52 (199)
472 1x3s_A RAS-related protein RAB 93.9 0.022 7.7E-07 48.0 2.2 24 60-83 16-39 (195)
473 2qu8_A Putative nucleolar GTP- 93.9 0.034 1.1E-06 49.0 3.5 24 59-82 29-52 (228)
474 1zbd_A Rabphilin-3A; G protein 93.9 0.029 9.9E-07 48.0 2.9 23 60-82 9-31 (203)
475 3oes_A GTPase rhebl1; small GT 93.9 0.028 9.7E-07 48.2 2.8 25 59-83 24-48 (201)
476 4gzl_A RAS-related C3 botulinu 93.9 0.03 1E-06 48.4 3.0 25 58-82 29-53 (204)
477 2bcg_Y Protein YP2, GTP-bindin 93.9 0.028 9.7E-07 48.2 2.8 23 60-82 9-31 (206)
478 2chq_A Replication factor C sm 93.9 0.031 1.1E-06 51.1 3.3 23 61-83 40-62 (319)
479 3cf2_A TER ATPase, transitiona 93.9 0.034 1.2E-06 59.3 3.9 32 57-89 236-267 (806)
480 2fh5_B SR-beta, signal recogni 93.9 0.035 1.2E-06 48.0 3.4 26 58-83 6-31 (214)
481 2qtf_A Protein HFLX, GTP-bindi 93.8 0.026 9E-07 54.5 2.8 24 60-83 180-203 (364)
482 4a1f_A DNAB helicase, replicat 93.8 0.036 1.2E-06 53.2 3.6 28 56-83 43-70 (338)
483 3cph_A RAS-related protein SEC 93.8 0.033 1.1E-06 47.8 3.0 25 58-82 19-43 (213)
484 2xtp_A GTPase IMAP family memb 93.8 0.033 1.1E-06 50.2 3.1 25 58-82 21-45 (260)
485 3lxw_A GTPase IMAP family memb 93.8 0.029 9.9E-07 50.8 2.7 25 59-83 21-45 (247)
486 1sxj_B Activator 1 37 kDa subu 93.7 0.036 1.2E-06 50.8 3.3 24 61-84 44-67 (323)
487 1zj6_A ADP-ribosylation factor 93.7 0.037 1.3E-06 46.7 3.1 25 58-82 15-39 (187)
488 2ew1_A RAS-related protein RAB 93.7 0.032 1.1E-06 48.5 2.8 23 60-82 27-49 (201)
489 3pxi_A Negative regulator of g 93.7 0.039 1.3E-06 58.0 3.9 26 59-84 201-226 (758)
490 3reg_A RHO-like small GTPase; 93.7 0.036 1.2E-06 47.1 3.0 24 59-82 23-46 (194)
491 2cjw_A GTP-binding protein GEM 93.7 0.035 1.2E-06 47.7 3.0 23 60-82 7-29 (192)
492 2qen_A Walker-type ATPase; unk 93.7 0.041 1.4E-06 50.9 3.6 26 59-84 31-56 (350)
493 2o52_A RAS-related protein RAB 93.6 0.031 1.1E-06 48.1 2.6 23 60-82 26-48 (200)
494 3cbq_A GTP-binding protein REM 93.6 0.027 9.2E-07 48.6 2.1 24 59-82 23-46 (195)
495 2j37_W Signal recognition part 93.5 0.035 1.2E-06 56.2 3.2 27 57-83 99-125 (504)
496 2fna_A Conserved hypothetical 93.5 0.039 1.3E-06 51.0 3.3 25 60-84 31-55 (357)
497 1mky_A Probable GTP-binding pr 93.5 0.034 1.2E-06 54.7 2.9 25 59-83 180-204 (439)
498 2atx_A Small GTP binding prote 93.4 0.039 1.3E-06 46.8 2.9 23 60-82 19-41 (194)
499 2e87_A Hypothetical protein PH 93.4 0.036 1.2E-06 52.9 2.9 26 58-83 166-191 (357)
500 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.039 1.3E-06 55.7 3.2 26 59-84 41-66 (500)
No 1
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=5.9e-63 Score=479.33 Aligned_cols=284 Identities=56% Similarity=0.933 Sum_probs=233.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccC-CCcccChhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVP-DDVEFTPDDF 135 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~-~~~~~s~~~f 135 (343)
.++++|+|+||||||||||++.||+.++ ++|||+|++|+|+|++|+|+||+.+|+.++||||+++.++ .+ .|++.+|
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e-~~s~~~F 115 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARG-ELTPADF 115 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGC-CCCHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccC-ccCHHHH
Confidence 4567999999999999999999999999 9999999999999999999999999999999999999999 78 9999999
Q ss_pred hhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcc-cccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 136 RLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRG-LSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 136 ~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~-~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
++.+.++|++|.++|++||+|||||+|+++++.+.++|. .++.... +..+++..+++++++|||++++++|++||++|
T Consensus 116 ~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~-~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 194 (339)
T 3a8t_A 116 RSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEG-SHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194 (339)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC--------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhc-ccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence 999999999999999999999999999999998865443 2211110 00133334578899999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCC-------Cc--cCcCChHHHHHHHHHH
Q 019312 215 VDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-------SV--EVKGEWDPVRRGVYQE 285 (343)
Q Consensus 215 v~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~-------~~--~~~~~~d~~~~~~~~~ 285 (343)
++.|+++||++||++|++.+......+.+...+++|+|||||+++||+++.+. .+ +.+.+++++++.+..+
T Consensus 195 ~~~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~ 274 (339)
T 3a8t_A 195 VDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKEN 274 (339)
T ss_dssp HHHHHHHTHHHHHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhhccHHHHHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhcCHHHHHHHHHHH
Confidence 99999999999999999765421000111248999999999999999974221 00 0123467888888999
Q ss_pred HHHHHHHH--hhhh---CCCCeeEecchhhHHHhhc--CCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312 286 ARQIDKIL--KLER---AGWDLRRLDATTAFRMLVN--GDQEWRCVWERQVVEPSVKIVKRFLDE 343 (343)
Q Consensus 286 tRQ~ak~q--~l~~---~gw~i~~ld~t~~~~~~~~--~~~~~~~~W~~~V~~pa~~iv~~fl~~ 343 (343)
||||||+| |+++ .+|++||+|+|+++++... ++.++++.|+++|++||++||++||+|
T Consensus 275 TR~yAKRQ~tWfr~~~~~~w~i~~lDat~~~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~~ 339 (339)
T 3a8t_A 275 TCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRFLDE 339 (339)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCEEEEECHHHHHHHHSTTTTHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCceeeeccccchhhhhhccccchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 98888877 5554 4799999999999865554 567788999999999999999999986
No 2
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=1.1e-61 Score=479.71 Aligned_cols=266 Identities=31% Similarity=0.526 Sum_probs=222.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
.++|+|+||||||||||+..|++.++ ++|||+|++|+|++++|+|+||+.+|+.+++|||++..++.+ .|++++|.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~-~~s~~~F~~~ 79 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSE-EYYSHRFETE 79 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTS-CCCHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHh-HhhHHHHHHH
Confidence 46899999999999999999999999 899999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCccc--------------------------------c----------
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGL--------------------------------S---------- 176 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~--------------------------------~---------- 176 (343)
|..+|++|.++|++||||||||||++||+.+.+++.. +
T Consensus 80 a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~R 159 (409)
T 3eph_A 80 CMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRR 159 (409)
T ss_dssp HHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHhccCHHHHHHHHHHhCHHHHHhcCcccHHH
Confidence 9999999999999999999999999999987542210 0
Q ss_pred ------cccccCCCccccc-------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCc
Q 019312 177 ------VFDDRFDSDSVSS-------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVS 243 (343)
Q Consensus 177 ------~~~~~~~~~~~~~-------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~ 243 (343)
++.. ++++++. .++|++++|||+++|++|++||++||+.|+++||+|||+.|++.+........+
T Consensus 160 i~RALEV~~~--TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~ 237 (409)
T 3eph_A 160 VQRMLEIYYK--TGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQ 237 (409)
T ss_dssp HHHHHHHHHH--HCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGG
T ss_pred HHHHHHHHHH--HCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccccccccc
Confidence 1111 1233331 257899999999999999999999999999999999999999864221001101
Q ss_pred cccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhC-----CCCeeEecchhhHHHhhc
Q 019312 244 LGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERA-----GWDLRRLDATTAFRMLVN 316 (343)
Q Consensus 244 ~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~-----gw~i~~ld~t~~~~~~~~ 316 (343)
.+.+++|+||||||++||++... +.+.+++++++.+..+||||||+| |+++. ++++||+|+|++
T Consensus 238 ~~~~~~~aIGYkE~~~yL~g~~~---~~e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~------ 308 (409)
T 3eph_A 238 CENGVWQVIGFKEFLPWLTGKTD---DNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL------ 308 (409)
T ss_dssp TTSGGGGSTTTGGGGGGGC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCT------
T ss_pred ccccchhcccHHHHHHHHcCCCc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCCh------
Confidence 24689999999999999985211 012568999999999999999987 56653 467999999998
Q ss_pred CCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312 317 GDQEWRCVWERQVVEPSVKIVKRFLDE 343 (343)
Q Consensus 317 ~~~~~~~~W~~~V~~pa~~iv~~fl~~ 343 (343)
+.|+++|++||++||++||++
T Consensus 309 ------~~W~~~V~~pa~~iv~~fl~~ 329 (409)
T 3eph_A 309 ------SQWDTNASQRAIAISNDFISN 329 (409)
T ss_dssp ------TTCTTTTHHHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999974
No 3
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=2.9e-57 Score=435.28 Aligned_cols=230 Identities=30% Similarity=0.489 Sum_probs=200.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
+++|+|+||||||||||+..||+.++ ++|||+||+|+|++++|+|+||+.+|+.+++|||++..+|.+ .|++++|.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e-~~s~~~F~~~ 80 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSE-SFSVADFQDL 80 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTS-CCCHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhh-hccHHHHHHH
Confidence 56899999999999999999999998 999999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCccc---------------------------------c---------
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGL---------------------------------S--------- 176 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~---------------------------------~--------- 176 (343)
|...|++|.++|++||||||||||++||++|...+.. +
T Consensus 81 a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~ 160 (322)
T 3exa_A 81 ATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYR 160 (322)
T ss_dssp HHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHH
T ss_pred HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHH
Confidence 9999999999999999999999999999987432211 0
Q ss_pred -------cccccCCCccccc--------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCC
Q 019312 177 -------VFDDRFDSDSVSS--------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNS 241 (343)
Q Consensus 177 -------~~~~~~~~~~~~~--------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~ 241 (343)
++.. ++++++. .++|++++|+|+++|++|++||++||+.|+++||+|||+.|++.+ .
T Consensus 161 Ri~RALEV~~~--TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~-~----- 232 (322)
T 3exa_A 161 RVIRALEIIKL--TGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRG-I----- 232 (322)
T ss_dssp HHHHHHHHHHH--TC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-C-----
T ss_pred HHHHHHHHHHH--HCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC-C-----
Confidence 1111 1234432 246889999999999999999999999999999999999999876 3
Q ss_pred CccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchh
Q 019312 242 VSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATT 309 (343)
Q Consensus 242 ~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~ 309 (343)
++.+++|+|||||+++||++ +.+++++++.+..+|||||||| |+++ ..+++|+|+.+
T Consensus 233 --~~~~a~~aIGYkE~~~yL~G--------~~sl~eaie~i~~~TR~yAKRQ~TWfR~-~~~~~w~~~~~ 291 (322)
T 3exa_A 233 --RDCQSVQAIGYKEMYDYLDG--------NVTLEEAIDTLKRNSRRYAKRQLTWFRN-KANVTWFDMTD 291 (322)
T ss_dssp --CSSTGGGSTTTHHHHHHHHT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEECTT
T ss_pred --CcCccceeeeHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCeEeCCCC
Confidence 26789999999999999985 5679999999999999999988 5664 34699999754
No 4
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=6.5e-57 Score=432.21 Aligned_cols=233 Identities=27% Similarity=0.378 Sum_probs=203.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
.+++++|+||||||||||+..||+.++ ++|||+||+|+|++++|+|+||+.+|+.+++|||++..++.+ .|++++|.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e-~~s~~~f~~ 86 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-VELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFRR 86 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccc-cccHHHHHH
Confidence 457999999999999999999999998 999999999999999999999999999999999999999999 999999999
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc---------
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS--------- 176 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~--------- 176 (343)
+|.+.|++|+++|++||||||||||++||++|.. ||.++
T Consensus 87 ~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~ 166 (316)
T 3foz_A 87 DALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQ 166 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHH
Confidence 9999999999999999999999999999998742 22211
Q ss_pred -------cccccCCCccccc-------ccCCceEEEEEeC-CHHHHHHHHHHHHHHHHhccHHHHHHHHHhcc-ccccCC
Q 019312 177 -------VFDDRFDSDSVSS-------SLRYNCCFLWVDS-SLQLLYDYLNKRVDDMLESGMFEELAEFFDSD-RMRNNN 240 (343)
Q Consensus 177 -------~~~~~~~~~~~~~-------~~~~~~~~i~L~~-~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~-~~~~~~ 240 (343)
++..+ +++++. .++|++++|+|.+ +|++|++||++||+.|+++||+|||+.|++.+ +.
T Consensus 167 Ri~RALEV~~~T--G~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~~---- 240 (316)
T 3foz_A 167 RLSRALEVFFIS--GKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLH---- 240 (316)
T ss_dssp HHHHHHHHHHHH--SSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHH--CCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCC----
Confidence 12111 233331 2568899999998 99999999999999999999999999999875 32
Q ss_pred CCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchhh
Q 019312 241 SVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATTA 310 (343)
Q Consensus 241 ~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~~ 310 (343)
.+.+++|+|||||+++||++ +.+++++++.+..+|||||||| |+++ ..+++|+|+++.
T Consensus 241 ---~~~~~~~aIGYkE~~~yL~G--------~~s~~eai~~~~~~TR~yAKRQ~TWfR~-~~~~~w~~~~~~ 300 (316)
T 3foz_A 241 ---TDLPSIRCVGYRQMWSYLEG--------EISYDEMVYRGVCATRQLAKRQITWLRG-WEGVHWLDSEKP 300 (316)
T ss_dssp ---TTSTTTTSTTHHHHHHHHHT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCEEEETTCH
T ss_pred ---ccCccceeeehhhHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEeCCcCh
Confidence 36789999999999999985 5679999999999999999988 6664 236999998765
No 5
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=1.6e-50 Score=390.67 Aligned_cols=231 Identities=26% Similarity=0.381 Sum_probs=194.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
+++|+|+||||||||||+..||+.++ .++||.|++|+|+|++|+|+||+.+|+.+++|||+++.++.+ .+++..|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~-~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~-~~~~~~F~~~ 82 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP-CELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAE-SYSAAEFRAD 82 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-EEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-CcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCccc-ccCHHHHHHH
Confidence 35899999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhh--------------------------------cCcccc----------
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQE--------------------------------YDRGLS---------- 176 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~--------------------------------~dp~~~---------- 176 (343)
+.+.|.++.++|+.||+||||++|++||+++. +||.++
T Consensus 83 a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~R 162 (323)
T 3crm_A 83 ALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQR 162 (323)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC------------------------------------------------
T ss_pred HHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHH
Confidence 99999999999999999999999999999863 133221
Q ss_pred ------cccccCCCccccc------------------ccCCceEEEEEeCC-HHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 019312 177 ------VFDDRFDSDSVSS------------------SLRYNCCFLWVDSS-LQLLYDYLNKRVDDMLESGMFEELAEFF 231 (343)
Q Consensus 177 ------~~~~~~~~~~~~~------------------~~~~~~~~i~L~~~-re~L~~RI~~Rv~~Ml~~GlleEv~~l~ 231 (343)
++..+ +++++. .++|++++|+|+++ |++|++||++||++|+++||+|||+.|+
T Consensus 163 i~RALEv~~~t--G~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~ 240 (323)
T 3crm_A 163 LMRALEVYRLG--GVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALH 240 (323)
T ss_dssp ---------------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 12211 233321 13578899999986 9999999999999999999999999999
Q ss_pred hcc-ccccCCCCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecch
Q 019312 232 DSD-RMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDAT 308 (343)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t 308 (343)
+.+ +. .+.+++|+|||||+++||++ +.+++++++.+..+||||||+| |+++ ..+++|+|++
T Consensus 241 ~~~~~~-------~~~~~~~aIGyke~~~yl~g--------~~~~~eai~~~~~~Tr~yAKRQ~TWfr~-~~~~~w~~~~ 304 (323)
T 3crm_A 241 ARSDLH-------AGLPSIRAVGYRQVWDYLDG--------KLSYAEMTERGIIATRQLAKRQFTWLRS-WSHLHWMDSL 304 (323)
T ss_dssp TCTTCC-------TTSSGGGSTTHHHHHHHHTT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCEEEETT
T ss_pred hcCCCC-------CCCcchheecHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEecCC
Confidence 765 22 26789999999999999985 5678999999999999999988 5664 2369999864
Q ss_pred h
Q 019312 309 T 309 (343)
Q Consensus 309 ~ 309 (343)
+
T Consensus 305 ~ 305 (323)
T 3crm_A 305 A 305 (323)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=2e-47 Score=371.21 Aligned_cols=227 Identities=31% Similarity=0.493 Sum_probs=197.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
.+|+|+||||||||||+..|++.++ ++|||.|++|+|++++|+|+||+.+|+.+++|||++..++.+ .+++.+|.+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~a 85 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKRA 85 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-CceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHHH
Confidence 5899999999999999999999999 899999999999999999999999999999999999999999 99999999999
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhh------cCcc----c--------c-------------------------
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQE------YDRG----L--------S------------------------- 176 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~------~dp~----~--------~------------------------- 176 (343)
...+.++.++|+.||+|||+++|+++++.+. .|++ . +
T Consensus 86 ~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d 165 (340)
T 3d3q_A 86 EKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNN 165 (340)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTTC
T ss_pred HHHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhCcHHHhhcCccC
Confidence 9999999999999999999999999998764 1222 0 0
Q ss_pred ---------cccccCCCccccc-------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCC
Q 019312 177 ---------VFDDRFDSDSVSS-------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNN 240 (343)
Q Consensus 177 ---------~~~~~~~~~~~~~-------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~ 240 (343)
++.. ++++++. ..+|++++|+|+++|++|++||++||+.|+++||+|||+.|++.+..
T Consensus 166 ~~Ri~RALEv~~~--tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~---- 239 (340)
T 3d3q_A 166 RKRVLRAIEYYLK--TKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFE---- 239 (340)
T ss_dssp HHHHHHHHHHHHH--HCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCT----
T ss_pred chhhhhHHHHHHH--hCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCC----
Confidence 0111 1234432 13589999999999999999999999999999999999999987531
Q ss_pred CCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecc
Q 019312 241 SVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDA 307 (343)
Q Consensus 241 ~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~ 307 (343)
+.+++|+|||||+++||++ +.+++++++.+..+||||||+| |+++ ..+++|+|+
T Consensus 240 ----~~~~~~aIGyke~~~yl~g--------~~~~~ea~~~~~~~Tr~yAKRQ~TWfr~-~~~~~w~~~ 295 (340)
T 3d3q_A 240 ----ASQSMQAIGYKELVPVIKG--------NISMENAVEKLKQHSRQYAKRQLTWFKN-KMNVHWLNK 295 (340)
T ss_dssp ----TSSGGGSTTTTTHHHHHHT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEET
T ss_pred ----cchhhhhccHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCeeecC
Confidence 4678999999999999985 5679999999999999999988 6765 235899986
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.96 E-value=1.4e-28 Score=228.82 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=169.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
++++|+||||||||||++.||+.++ .++||.|++++|+|++++|++|+.+++.+++||+++..++.++.++...|.+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH
Confidence 4789999999999999999999998 899999999889999999999999999999999999888765568999999999
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCH-HHHHHHHHHHHHHH
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSL-QLLYDYLNKRVDDM 218 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~r-e~L~~RI~~Rv~~M 218 (343)
...+ ++.++|+.+|++||++.|+++++.+.. .. ..++++++||+++. +.+.+|+.+|.++|
T Consensus 81 ~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~-------~~----------~~~~~~~i~l~~~~~e~l~~Rl~~R~~~m 142 (253)
T 2ze6_A 81 IFEV-DWRKSEEGLILEGGSISLLNCMAKSPF-------WR----------SGFQWHVKRLRLGDSDAFLTRAKQRVAEM 142 (253)
T ss_dssp HHHH-HTTTTSSEEEEEECCHHHHHHHHHCTT-------TT----------SSCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhCCCCeEEeccHHHHHHHHHhccc-------cc----------ccCceEEEEecchhHHHHHHHHHHHHHHH
Confidence 9999 888999999999999999999875310 00 13456789999885 99999999999999
Q ss_pred Hhc-----cHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCc----cCcCChHHHHHHHHHHHHHH
Q 019312 219 LES-----GMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASV----EVKGEWDPVRRGVYQEARQI 289 (343)
Q Consensus 219 l~~-----GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~----~~~~~~d~~~~~~~~~tRQ~ 289 (343)
+.. |+++|+..+++.... ...+...+||+|+++|+.......+ ..+...+++.+.....++||
T Consensus 143 l~~~~~~~~~l~e~~~~~~~p~~--------~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 214 (253)
T 2ze6_A 143 FAIREDRPSLLEELAELWNYPAA--------RPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANEYLEH 214 (253)
T ss_dssp HCCCSSSCCHHHHHHHHHTSTTH--------HHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHHHHHH
T ss_pred HhcCcccchHHHHHHHhcCCcch--------HHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 887 999999999875321 2345568999999999974221111 01222456667777777888
Q ss_pred HHHHh
Q 019312 290 DKILK 294 (343)
Q Consensus 290 ak~q~ 294 (343)
||+|.
T Consensus 215 a~~q~ 219 (253)
T 2ze6_A 215 ALSQE 219 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.29 E-value=6e-13 Score=120.10 Aligned_cols=75 Identities=25% Similarity=0.344 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc---ccCCCCCcccccccCccc----cccccCCCcc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD---ITTNKIPSHKRHNVPHHL----LGEFVPDDVE 129 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~---I~T~kp~~~e~~~i~h~l----i~~~~~~~~~ 129 (343)
..+..++|+||||||||||+..|++... ++||.|++|+|++++ |+|++|+ ++||| ++++++.+ .
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~-~ 102 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH--RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMN-L 102 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHH-H
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccc-c
Confidence 3578899999999999999999999875 999999999999999 8999885 89999 99999999 9
Q ss_pred cChhhhhhhhh
Q 019312 130 FTPDDFRLQAD 140 (343)
Q Consensus 130 ~s~~~f~~~a~ 140 (343)
|++..|+..+.
T Consensus 103 f~~~~f~~~a~ 113 (205)
T 2qmh_A 103 FGAGAVREDTT 113 (205)
T ss_dssp HCTTSBCSCCB
T ss_pred CCHHHHHhcCc
Confidence 99999987764
No 9
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=1.2e-12 Score=117.31 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
++|++++|+||||||||||++.|++.+++. ++...+.+|.+|...+..|+.||+++...+.. .+....|.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~---------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~-~~~~~~~l 75 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETS---------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQ-AIKDGKML 75 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCC---------CEECCCEESSCCCTTCCBTTTBEECCHHHHHH-HHHTTCEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCc---------EEEEEecccccCcCcccCCceeEEecHHHHHH-HHhcCcEE
Confidence 568999999999999999999999988621 24566778899988889999999877554443 33233333
Q ss_pred hh----------hhHHHHHHHhcCCeeEEEc---CchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCC
Q 019312 137 LQ----------ADNAISDIISRKKTPLLVG---GSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSS 203 (343)
Q Consensus 137 ~~----------a~~~i~~i~~~g~~pIlvG---GT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~ 203 (343)
+. ....+.++.+.|+.+|+.+ |... +... .+....+|+++++
T Consensus 76 e~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~----~~~~---------------------~~~~~~i~i~~ps 130 (208)
T 3tau_A 76 EYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQ----VRKA---------------------MPEGIFIFLTPPD 130 (208)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHH----HHHH---------------------CTTSEEEEEECTT
T ss_pred EEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHH----HHHh---------------------CCCeEEEEEeCCC
Confidence 22 2356788888999888743 3211 1100 0112345555666
Q ss_pred HHHHHHHHHHHH
Q 019312 204 LQLLYDYLNKRV 215 (343)
Q Consensus 204 re~L~~RI~~Rv 215 (343)
.++|.+|+.+|-
T Consensus 131 ~~~l~~Rl~~R~ 142 (208)
T 3tau_A 131 LSELKNRIIGRG 142 (208)
T ss_dssp TTTSSCC-----
T ss_pred HHHHHHHHHhcC
Confidence 889999988884
No 10
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.23 E-value=6.3e-12 Score=112.06 Aligned_cols=124 Identities=19% Similarity=0.125 Sum_probs=88.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
+.|+|+||||||||||++.|...++ +.+ ..-.+.+|.+|.+.|..|+.||+++.-.+.. ....+.|.+.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~-------~~~--~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~-~i~~g~flE~~ 71 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP-------DSF--GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS-MIKNNEFIEWA 71 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT-------TTE--EECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC-------CCe--EEEEEEeccCCCCCCcCCceeEeecHHHHHH-HHHcCCEEEEE
Confidence 4589999999999999999988876 233 3356778999999999999999998776665 55555555543
Q ss_pred ----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCc-eEEEEEeCCHHHHH
Q 019312 140 ----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYN-CCFLWVDSSLQLLY 208 (343)
Q Consensus 140 ----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~~re~L~ 208 (343)
...+.++.+.|+.+|+.+ .--.++.+-. ..+.+ ..+|.++++.++|.
T Consensus 72 ~~~g~~YGt~~~~v~~~l~~g~~vil~i-d~~g~~~~k~---------------------~~~~~~~~Ifi~pps~e~L~ 129 (186)
T 1ex7_A 72 QFSGNYYGSTVASVKQVSKSGKTCILDI-DMQGVKSVKA---------------------IPELNARFLFIAPPSVEDLK 129 (186)
T ss_dssp EETTEEEEEEHHHHHHHHHHTSEEEEEC-CHHHHHHHHT---------------------CGGGCCEEEEEECSCHHHHH
T ss_pred EEcCceeeeecceeeehhhCCCEEEecC-CHHHHHHHHH---------------------hcccCceEEEEeCCCHHHHH
Confidence 466788888898776654 2222222211 11122 34566788999999
Q ss_pred HHHHHHH
Q 019312 209 DYLNKRV 215 (343)
Q Consensus 209 ~RI~~Rv 215 (343)
+||.+|-
T Consensus 130 ~RL~~Rg 136 (186)
T 1ex7_A 130 KRLEGRG 136 (186)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999994
No 11
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.21 E-value=1.9e-11 Score=109.99 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.++++++|+||||||||||++.|++.++ .. +....+.+|.+|...|..|++||+++...+.. .+....|.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~-~~--------~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~-~i~~~~fl 86 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP-EK--------FVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR-NISANEFL 86 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT-TT--------EECCCCEECSCCCTTCCTTSSCEECCHHHHHH-HHHTTCEE
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC-cc--------EEeeecccccCCcCCeeccccceeccHHHhhh-hhhhhhhh
Confidence 4689999999999999999999999876 21 23455678999999999999999988666555 44444554
Q ss_pred hhh----------hHHHHHHHhcCCeeEEEc
Q 019312 137 LQA----------DNAISDIISRKKTPLLVG 157 (343)
Q Consensus 137 ~~a----------~~~i~~i~~~g~~pIlvG 157 (343)
+.+ ...++++.++|+.+|+..
T Consensus 87 e~~~~~~n~YGt~~~~v~~~l~~G~~vildi 117 (197)
T 3ney_A 87 EFGSYQGNMFGTKFETVHQIHKQNKIAILDI 117 (197)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhhceecccchhhHHHHHhcCCeEEEEE
Confidence 433 466888999999888864
No 12
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=9.3e-11 Score=103.80 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=70.7
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCc
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h 117 (343)
.++++++++ .++++|+|+||+||||||+++.|++.++ ..+++.|.+. . +..+..
T Consensus 14 ~~~~~~~~~----------~~~~~i~l~G~~GsGKsTl~~~La~~l~-~~~i~~d~~~-~-------------~~~g~~- 67 (199)
T 3vaa_A 14 GTENLYFQS----------NAMVRIFLTGYMGAGKTTLGKAFARKLN-VPFIDLDWYI-E-------------ERFHKT- 67 (199)
T ss_dssp --------------------CCCEEEEECCTTSCHHHHHHHHHHHHT-CCEEEHHHHH-H-------------HHHTSC-
T ss_pred CCCceeEec----------CCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcchHHH-H-------------HHhCCc-
Confidence 567888886 6788999999999999999999999998 7777777651 1 000100
Q ss_pred cccccccCCCcccChhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEE
Q 019312 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF 197 (343)
Q Consensus 118 ~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~ 197 (343)
..+... ......|.....+.+.++...+...|.+||.... ++.. . ..+.....+
T Consensus 68 ----i~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~---------~~~~--~----------~~l~~~~~v 121 (199)
T 3vaa_A 68 ----VGELFT-ERGEAGFRELERNMLHEVAEFENVVISTGGGAPC---------FYDN--M----------EFMNRTGKT 121 (199)
T ss_dssp ----HHHHHH-HHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGG---------STTH--H----------HHHHHHSEE
T ss_pred ----HHHHHH-hcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEc---------cHHH--H----------HHHHcCCEE
Confidence 000111 2233456666667777777666655555653221 1110 0 000112467
Q ss_pred EEEeCCHHHHHHHHH
Q 019312 198 LWVDSSLQLLYDYLN 212 (343)
Q Consensus 198 i~L~~~re~L~~RI~ 212 (343)
+||+++.+++.+|+.
T Consensus 122 i~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 122 VFLNVHPDVLFRRLR 136 (199)
T ss_dssp EEEECCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHh
Confidence 899999999999997
No 13
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.00 E-value=4.5e-10 Score=98.70 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccCh----
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTP---- 132 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~---- 132 (343)
.+|.+++|+||||||||||++.|++.++ . + +......+..+...+..++.+++.+...... ....
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 73 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA-E-------I--KISISHTTRPKRPGDQEGVDYFFIDETRFQA-MVKEGAFL 73 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS-S-------E--EECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHHTCEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC-C-------e--EEeceeccCCCchhHhcCceEEeccHHHHHH-HHhcCcEE
Confidence 5689999999999999999999999864 2 2 2222333444544555666655443221111 0000
Q ss_pred ------hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312 133 ------DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL 206 (343)
Q Consensus 133 ------~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~ 206 (343)
..+.......+.++.+.|+.+|+.+ .-..+..+... ......++.++++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~-~~~~~~~~~~~---------------------~~~~~~v~~~~~~~e~ 131 (205)
T 3tr0_A 74 EHATIYERHYGTEKDWVLRQLKAGRDVLLEI-DWQGARQIREL---------------------FPPALSIFILPPSIEA 131 (205)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHHHH---------------------CTTCEEEEEECSCHHH
T ss_pred eeeeeecccccchHHHHHHHHHcCCeEEEEE-CHHHHHHHHHh---------------------CCCcEEEEEECcCHHH
Confidence 0011122346677777888766654 21111111110 0111234445567999
Q ss_pred HHHHHHHH
Q 019312 207 LYDYLNKR 214 (343)
Q Consensus 207 L~~RI~~R 214 (343)
|.+|+.+|
T Consensus 132 l~~Rl~~R 139 (205)
T 3tr0_A 132 LRERLIKR 139 (205)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99999888
No 14
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.99 E-value=3.3e-10 Score=108.30 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=62.4
Q ss_pred CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
....+++.+|+|.|+... .+|+++++++ ++|++++|+||||||||||++.|++.+.|. .|++ .+
T Consensus 50 ~~~~i~~~~vs~~y~~~~-~vL~~isl~i----------~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~----~G~I-~i 113 (306)
T 3nh6_A 50 QKGRIEFENVHFSYADGR-ETLQDVSFTV----------MPGQTLALVGPSGAGKSTILRLLFRFYDIS----SGCI-RI 113 (306)
T ss_dssp SSCCEEEEEEEEESSTTC-EEEEEEEEEE----------CTTCEEEEESSSCHHHHHHHHHHTTSSCCS----EEEE-EE
T ss_pred CCCeEEEEEEEEEcCCCC-ceeeeeeEEE----------cCCCEEEEECCCCchHHHHHHHHHcCCCCC----CcEE-EE
Confidence 456899999999998654 4899999998 899999999999999999999999999865 6888 48
Q ss_pred ecccccCC
Q 019312 98 KGLDITTN 105 (343)
Q Consensus 98 ~gl~I~T~ 105 (343)
.|.++...
T Consensus 114 ~G~~i~~~ 121 (306)
T 3nh6_A 114 DGQDISQV 121 (306)
T ss_dssp TTEETTSB
T ss_pred CCEEcccC
Confidence 89888643
No 15
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.95 E-value=2e-10 Score=103.78 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=39.9
Q ss_pred cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH-hhcCCCceecCCceEEEecccccCCCCCcccccccCc
Q 019312 39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA-TRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la-~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h 117 (343)
...+++++ .+|++++|+||||||||||++.|+ +.++ . ++.+.++++.+|...+..++.+
T Consensus 17 ~~~~sl~v----------~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~-~---------~~~~~~~~~~~~~~g~~~g~~~ 76 (231)
T 3lnc_A 17 QGPGSMLK----------SVGVILVLSSPSGCGKTTVANKLLEKQKN-N---------IVKSVSVTTRAARKGEKEGKDY 76 (231)
T ss_dssp -----CCE----------ECCCEEEEECSCC----CHHHHHHC-----C---------EEECCCEESSCCCTTCCBTTTB
T ss_pred cCCCCccc----------CCCCEEEEECCCCCCHHHHHHHHHhcCCC-C---------cccccccCCCCCCccccCCCeE
Confidence 34677776 789999999999999999999999 8875 2 3667788888887777777766
Q ss_pred cccc
Q 019312 118 HLLG 121 (343)
Q Consensus 118 ~li~ 121 (343)
++.+
T Consensus 77 ~~~~ 80 (231)
T 3lnc_A 77 YFVD 80 (231)
T ss_dssp EECC
T ss_pred EEec
Confidence 5543
No 16
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.92 E-value=5.3e-10 Score=103.42 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=59.5
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..++++.++++.|+.....+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~I-~i~ 69 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSI----------KQGEVIGIVGRSGSGKSTLTKLIQRFYIPE----NGQV-LID 69 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EET
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EEC
Confidence 4578999999999532345899999998 899999999999999999999999998854 6888 477
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 70 g~~~~ 74 (247)
T 2ff7_A 70 GHDLA 74 (247)
T ss_dssp TEETT
T ss_pred CEEhh
Confidence 88775
No 17
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.92 E-value=9.6e-10 Score=103.07 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=60.0
Q ss_pred ccceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 19 QQHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
...+++.+++|.|... ...+|+++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~----~G~I-~~ 78 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTL----------YPGKVTALVGPNGSGKSTVAALLQNLYQPT----GGKV-LL 78 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EE
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CCEE-EE
Confidence 3569999999999752 234899999998 899999999999999999999999998854 6888 47
Q ss_pred ecccccC
Q 019312 98 KGLDITT 104 (343)
Q Consensus 98 ~gl~I~T 104 (343)
.|.++..
T Consensus 79 ~g~~i~~ 85 (271)
T 2ixe_A 79 DGEPLVQ 85 (271)
T ss_dssp TTEEGGG
T ss_pred CCEEccc
Confidence 8888753
No 18
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.90 E-value=4.8e-10 Score=104.15 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=81.0
Q ss_pred ceeeccc-CCcCCcccccccccceeeeccCCCCCCCCCC---CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 21 HYSSFYS-PFLHPKRRRSRWRKTVMASTSHTPAPAHSKK---DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
.+++.++ +|.|.. ...+++++++++ .+ +++|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i----------~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg-~~~~d~d~~-- 82 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEV----------KPYLNGRSMYLVGMMGSGKTTVGKIMARSLG-YTFFDCDTL-- 82 (250)
T ss_dssp ----------------CHHHHHHHHTT----------HHHHTTCCEEEECSTTSCHHHHHHHHHHHHT-CEEEEHHHH--
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhh----------hhhcCCCEEEEECCCCCCHHHHHHHHHHhcC-CcEEeCcHH--
Confidence 5788888 888832 344899999997 66 89999999999999999999999998 777777665
Q ss_pred EecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHHHHHhc-CCeeEEEcCchhhHHHHHhhhcCccc
Q 019312 97 YKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISR-KKTPLLVGGSNSFIYSLLVQEYDRGL 175 (343)
Q Consensus 97 y~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~-g~~pIlvGGT~lY~~aLl~~~~dp~~ 175 (343)
+.... .+.. .....+ .++...|++...+.+.++.+. ....|.+||. ..+ ++..
T Consensus 83 ~~~~~-----------~g~~-----i~~i~~-~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG-~v~--------~~~~ 136 (250)
T 3nwj_A 83 IEQAM-----------KGTS-----VAEIFE-HFGESVFREKETEALKKLSLMYHQVVVSTGGG-AVI--------RPIN 136 (250)
T ss_dssp HHHHS-----------TTSC-----HHHHHH-HHCHHHHHHHHHHHHHHHHHHCSSEEEECCGG-GGG--------SHHH
T ss_pred HHHHh-----------cCcc-----HHHHHH-HhCcHHHHHHHHHHHHHHHhhcCCcEEecCCC-eec--------CHHH
Confidence 21110 0000 000011 334556776666777777766 5555556652 211 1111
Q ss_pred ccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312 176 SVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK 213 (343)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 213 (343)
. .. +. ...+|||+++.++|.+|+.+
T Consensus 137 ~--------~~----l~-~~~vV~L~a~~e~l~~Rl~~ 161 (250)
T 3nwj_A 137 W--------KY----MH-KGISIWLDVPLEALAHRIAA 161 (250)
T ss_dssp H--------HH----HT-TSEEEEEECCHHHHHHHHHC
T ss_pred H--------HH----Hh-CCcEEEEECCHHHHHHHHhh
Confidence 0 00 01 13579999999999999975
No 19
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.87 E-value=3.2e-09 Score=94.23 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhh-
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDF- 135 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f- 135 (343)
.++.+|+|+||+|||||||++.|++.++ . .+ +.....+|.+|...+..+..+++++.-.... ....+.|
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~-~------~~--~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~-~~~~~~~~ 79 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP-S------RF--RFSISCTTRNKREKETNGVDYYFVDKDDFER-KLKEGQFL 79 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT-T------TE--EECCEEECSCCCTTCCBTTTEEECCHHHHHH-HHHTTCEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc-c------ce--eeeeeecCCCCCCCCCCCcceeeCCHHHHHH-HHHcCCCE
Confidence 5789999999999999999999999875 2 12 3334556777777777777777664322211 0000111
Q ss_pred ---------hhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEe-CCHH
Q 019312 136 ---------RLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVD-SSLQ 205 (343)
Q Consensus 136 ---------~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~-~~re 205 (343)
.......+.++.+.|+..|+.+.. --...+... + ...+..+++|. ++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~-~~~~~l~~~--------~------------~~~~~~~i~l~~~s~e 138 (204)
T 2qor_A 80 EFDKYANNFYGTLKSEYDLAVGEGKICLFEMNI-NGVKQLKES--------K------------HIQDGIYIFVKPPSID 138 (204)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEECCH-HHHHHHHHC--------S------------SCSCCEEEEEECSCHH
T ss_pred EeHHhCCCeecCCHHHHHHHHHcCCeEEEEECH-HHHHHHHHh--------c------------CCCCeEEEEEcCCCHH
Confidence 111224567777788876665421 111222100 0 00134678887 8999
Q ss_pred HHHHHHHHHH
Q 019312 206 LLYDYLNKRV 215 (343)
Q Consensus 206 ~L~~RI~~Rv 215 (343)
+|.+|+.+|-
T Consensus 139 ~l~~Rl~~R~ 148 (204)
T 2qor_A 139 ILLGRLKNRN 148 (204)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHHHcC
Confidence 9999998774
No 20
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.86 E-value=6.3e-10 Score=97.48 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC----ccc--C-
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD----VEF--T- 131 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~----~~~--s- 131 (343)
+++++|+||||||||||++.|++.+++. . ......+|..|+..+..++.+++.+...... ..+ .
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~-------~--~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~ 71 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS-------F--GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWA 71 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG-------E--ECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc-------c--eEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEE
Confidence 4689999999999999999999987621 1 2233446666776666777666543221111 000 0
Q ss_pred --hhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeC-CHHHHH
Q 019312 132 --PDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDS-SLQLLY 208 (343)
Q Consensus 132 --~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~-~re~L~ 208 (343)
.+.+.....+.++++.+.|+..|+. ..-.=.+.+.. ....+..++++.+ +.+.|.
T Consensus 72 ~~~~~~yg~~~~~i~~~l~~g~~~il~-~~~~g~~~l~~---------------------~~~~~~~~i~i~~p~~~~l~ 129 (186)
T 3a00_A 72 QFSGNYYGSTVASVKQVSKSGKTCILD-IDMQGVKSVKA---------------------IPELNARFLFIAPPSVEDLK 129 (186)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEE-CCHHHHHHHHT---------------------CGGGCCEEEEEECSCC----
T ss_pred EEeceeccCcHHHHHHHHHcCCeEEEE-EcHHHHHHHHH---------------------hcCCCeEEEEEECcCHHHHH
Confidence 0011112235677778888866553 11100111110 0011233455655 569999
Q ss_pred HHHHHHHH
Q 019312 209 DYLNKRVD 216 (343)
Q Consensus 209 ~RI~~Rv~ 216 (343)
+|+.+|-.
T Consensus 130 ~Rl~~Rg~ 137 (186)
T 3a00_A 130 KRLEGRGT 137 (186)
T ss_dssp --------
T ss_pred HHHHhcCC
Confidence 99998853
No 21
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.85 E-value=1.4e-09 Score=94.87 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
.++++++|+||||||||||++.|++.+++. .+..+..+|.+|...+..++.|++++...... .+....|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~---------~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~-~~~~~~~l 72 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR---------FAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ-DISNNEYL 72 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT---------EECCCCEECSCC---CCBTTTBEECCHHHHHH-HHHTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc---------EEEeeeccCCCCCccccCCCeeEEeCHHHHHH-HHHcCCce
Confidence 457899999999999999999999987521 13344567888887788888888765433222 11111222
Q ss_pred h----------hhhHHHHHHHhcCCeeEEEc
Q 019312 137 L----------QADNAISDIISRKKTPLLVG 157 (343)
Q Consensus 137 ~----------~a~~~i~~i~~~g~~pIlvG 157 (343)
. .....+.++.+.|+.+|+..
T Consensus 73 ~~~~~~~n~yg~~~~~i~~~l~~g~~vil~i 103 (180)
T 1kgd_A 73 EYGSHEDAMYGTKLETIRKIHEQGLIAILDV 103 (180)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEcCccccccHHHHHHHHHCCCeEEEEE
Confidence 1 12356778888999888863
No 22
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.84 E-value=2.9e-09 Score=97.92 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.+++|.|+.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 65 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEA----------QPNSIIAFAGPSGGGKSTIFSLLERFYQPT----AGEI-TIDGQP 65 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEE----------CTTEEEEEECCTTSSHHHHHHHHTTSSCCS----BSCE-EETTEE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECCEE
Confidence 5678899999533 34899999998 899999999999999999999999998854 7888 478888
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 66 ~~~ 68 (243)
T 1mv5_A 66 IDN 68 (243)
T ss_dssp STT
T ss_pred hhh
Confidence 754
No 23
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.84 E-value=1.2e-09 Score=100.25 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=57.9
Q ss_pred eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|+.+. ..+|+++++++ .+|++++|+||||||||||++.|++.+.|. .|++ .+.|
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i----------~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g 66 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNI----------KEGEFVSIMGPSGSGKSTMLNIIGCLDKPT----EGEV-YIDN 66 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ceEE-EECC
Confidence 56788999887543 24899999998 899999999999999999999999998864 6888 4788
Q ss_pred ccccCC
Q 019312 100 LDITTN 105 (343)
Q Consensus 100 l~I~T~ 105 (343)
.++...
T Consensus 67 ~~~~~~ 72 (235)
T 3tif_A 67 IKTNDL 72 (235)
T ss_dssp EECTTC
T ss_pred EEcccC
Confidence 887543
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.84 E-value=1.5e-09 Score=102.09 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=58.5
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|+...+ +|+++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 7 ~l~i~~ls~~y~~~~~-~L~~isl~i----------~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~----~G~I-~~~G~ 70 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTH-ALKGINMNI----------KRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRI-LFDNK 70 (275)
T ss_dssp EEEEEEEEEECTTSCE-EEEEEEEEE----------ETTSEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred EEEEEEEEEEECCCCe-EEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CeEE-EECCE
Confidence 5789999999975543 899999998 899999999999999999999999998864 6888 47888
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 71 ~i~ 73 (275)
T 3gfo_A 71 PID 73 (275)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 25
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.82 E-value=2e-09 Score=120.46 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCccceeecccCCcCCcccc-cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312 15 HHQQQQHYSSFYSPFLHPKRRR-SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK 93 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds 93 (343)
..|..+.|++.+|+|.||.+.. ++|+++++++ ++|+.++|+||||||||||+..|.+.++|. .|+
T Consensus 1070 ~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I----------~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~----~G~ 1135 (1321)
T 4f4c_A 1070 KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSV----------EPGQTLALVGPSGCGKSTVVALLERFYDTL----GGE 1135 (1321)
T ss_dssp CCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEE----------CTTCEEEEECSTTSSTTSHHHHHTTSSCCS----SSE
T ss_pred CCCCCCeEEEEEEEEeCCCCCCCccccceeEEE----------CCCCEEEEECCCCChHHHHHHHHhcCccCC----CCE
Confidence 3455689999999999997653 5999999998 999999999999999999999999999865 788
Q ss_pred eEEEecccccCC
Q 019312 94 MQVYKGLDITTN 105 (343)
Q Consensus 94 ~qvy~gl~I~T~ 105 (343)
+ .+.|.||.+-
T Consensus 1136 I-~iDG~di~~i 1146 (1321)
T 4f4c_A 1136 I-FIDGSEIKTL 1146 (1321)
T ss_dssp E-EETTEETTTB
T ss_pred E-EECCEEhhhC
Confidence 8 5899998643
No 26
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.81 E-value=2.4e-09 Score=92.79 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~ 137 (343)
.++.|+|+||+||||||+++.|++.++ ..+|+.|.+ .. +..+.+ ..+..+ .+....|..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~-~~~i~~d~~--~~------------~~~g~~-----~~~~~~-~~g~~~~~~ 62 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-RILYDSDKE--IE------------KRTGAD-----IAWIFE-MEGEAGFRR 62 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHH--HH------------HHHTSC-----HHHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHH--HH------------HHcCCC-----hhhHHH-HhCHHHHHH
Confidence 357899999999999999999999998 888888877 11 111111 001111 233456777
Q ss_pred hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHH
Q 019312 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYL 211 (343)
Q Consensus 138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI 211 (343)
...+.+.++.+.....|.+||+..+ ++.. .. .+.-...+++|++|.+++.+|+
T Consensus 63 ~~~~~~~~~~~~~~~vi~~gg~~~~---------~~~~---~~---------~l~~~~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 63 REREMIEALCKLDNIILATGGGVVL---------DEKN---RQ---------QISETGVVIYLTASIDTQLKRI 115 (185)
T ss_dssp HHHHHHHHHHHSSSCEEECCTTGGG---------SHHH---HH---------HHHHHEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEecCCceec---------CHHH---HH---------HHHhCCcEEEEECCHHHHHHHH
Confidence 7777888887777777777775433 1110 00 0011236789999999999999
No 27
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.81 E-value=1.8e-09 Score=97.99 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=57.4
Q ss_pred CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
|+-...-+++.++++.|.. .+++++++++ .+|++++|+||||||||||++.|++.++|. .|++
T Consensus 4 ~~~~~~~l~~~~ls~~y~~---~il~~vsl~i----------~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~----~G~I 66 (214)
T 1sgw_A 4 HHHHGSKLEIRDLSVGYDK---PVLERITMTI----------EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEI 66 (214)
T ss_dssp -----CEEEEEEEEEESSS---EEEEEEEEEE----------ETTCCEEEECCTTSSHHHHHHHHTTSSCCS----EEEE
T ss_pred ccCCCceEEEEEEEEEeCC---eEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE
Confidence 3334457889999999964 5899999998 899999999999999999999999998754 6888
Q ss_pred EEEeccccc
Q 019312 95 QVYKGLDIT 103 (343)
Q Consensus 95 qvy~gl~I~ 103 (343)
. +.|.++.
T Consensus 67 ~-~~g~~~~ 74 (214)
T 1sgw_A 67 I-YNGVPIT 74 (214)
T ss_dssp E-ETTEEGG
T ss_pred E-ECCEEhh
Confidence 4 7777764
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.81 E-value=2.8e-09 Score=103.84 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=60.7
Q ss_pred CCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312 12 ACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS 91 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~ 91 (343)
.|.|+-....+++.++++.|+.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .
T Consensus 5 ~~~~~~~~~~l~~~~l~~~y~g~-~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~ 69 (355)
T 1z47_A 5 HHHHHHGSMTIEFVGVEKIYPGG-ARSVRGVSFQI----------REGEMVGLLGPSGSGKTTILRLIAGLERPT----K 69 (355)
T ss_dssp ------CCEEEEEEEEEECCTTS-TTCEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTSSCCS----E
T ss_pred cccccCCCceEEEEEEEEEEcCC-CEEEeeeEEEE----------CCCCEEEEECCCCCcHHHHHHHHhCCCCCC----c
Confidence 34455566789999999999522 34899999998 899999999999999999999999998854 6
Q ss_pred CceEEEecccccC
Q 019312 92 DKMQVYKGLDITT 104 (343)
Q Consensus 92 Ds~qvy~gl~I~T 104 (343)
|++ .+.|.++..
T Consensus 70 G~I-~i~g~~i~~ 81 (355)
T 1z47_A 70 GDV-WIGGKRVTD 81 (355)
T ss_dssp EEE-EETTEECTT
T ss_pred cEE-EECCEECCc
Confidence 888 478888754
No 29
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.79 E-value=3.2e-09 Score=109.51 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
+....+++.+|+|.|+.+.+.+|+++++++ ++|++++|+||||||||||++.|++.++|. .|++ .
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i----------~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~----~G~i-~ 401 (587)
T 3qf4_A 337 NVEGSVSFENVEFRYFENTDPVLSGVNFSV----------KPGSLVAVLGETGSGKSTLMNLIPRLIDPE----RGRV-E 401 (587)
T ss_dssp CCCCCEEEEEEEECSSSSSCCSEEEEEEEE----------CTTCEEEEECSSSSSHHHHHHTTTTSSCCS----EEEE-E
T ss_pred CCCCcEEEEEEEEEcCCCCCcceeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCccCC----CcEE-E
Confidence 345789999999999877667999999998 899999999999999999999999999865 6888 4
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.|+...
T Consensus 402 i~g~~i~~~ 410 (587)
T 3qf4_A 402 VDELDVRTV 410 (587)
T ss_dssp ESSSBGGGB
T ss_pred ECCEEcccC
Confidence 788888643
No 30
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.78 E-value=3.4e-09 Score=109.11 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
+....+++.+|+|.|+...+.+|+++++++ ++|++++|+||||||||||++.|++.++|. .|++ .
T Consensus 335 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i----------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i-~ 399 (578)
T 4a82_A 335 IKQGRIDIDHVSFQYNDNEAPILKDINLSI----------EKGETVAFVGMSGGGKSTLINLIPRFYDVT----SGQI-L 399 (578)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHTTTTTSSCCS----EEEE-E
T ss_pred CCCCeEEEEEEEEEcCCCCCcceeeeEEEE----------CCCCEEEEECCCCChHHHHHHHHhcCCCCC----CcEE-E
Confidence 345789999999999976666999999998 899999999999999999999999999865 6888 4
Q ss_pred EecccccC
Q 019312 97 YKGLDITT 104 (343)
Q Consensus 97 y~gl~I~T 104 (343)
+.|.++..
T Consensus 400 ~~g~~~~~ 407 (578)
T 4a82_A 400 IDGHNIKD 407 (578)
T ss_dssp ETTEEGGG
T ss_pred ECCEEhhh
Confidence 88888854
No 31
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.76 E-value=4e-09 Score=98.55 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=57.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i----------~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~----~G~I-~~~g~ 86 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHI----------REGEVVVVIGPSGSGKSTFLRCLNLLEDFD----EGEI-IIDGI 86 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEE----------cCCCEEEEEcCCCCcHHHHHHHHHcCCCCC----CcEE-EECCE
Confidence 3889999999953 34899999998 899999999999999999999999998854 6888 47888
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 87 ~i~ 89 (263)
T 2olj_A 87 NLK 89 (263)
T ss_dssp ESS
T ss_pred ECC
Confidence 874
No 32
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.76 E-value=5.9e-09 Score=94.72 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC-------c
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD-------V 128 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~-------~ 128 (343)
.++|++++|+||||||||||++.|++.+++ +.+ .....++|..+...++.++.|++.+...+.. .
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p------~~~--~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL------YDT--QVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT------TTE--EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC------Cce--EEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHH
Confidence 378999999999999999999999998863 111 2244555555555566677766554221111 0
Q ss_pred -ccCh-hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312 129 -EFTP-DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL 206 (343)
Q Consensus 129 -~~s~-~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~ 206 (343)
.... ..+.....+.+.++.+.|++.|+- +|+.... .+....+....+|++..+.++
T Consensus 85 E~~~~~~~~yg~~~~~v~~~l~~G~illLD--------------LD~~~~~--------~i~~~l~~~~tI~i~th~~~~ 142 (219)
T 1s96_A 85 EHAEVFGNYYGTSREAIEQVLATGVDVFLD--------------IDWQGAQ--------QIRQKMPHARSIFILPPSKIE 142 (219)
T ss_dssp EEEEETTEEEEEEHHHHHHHHTTTCEEEEE--------------CCHHHHH--------HHHHHCTTCEEEEEECSSHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHhcCCeEEEE--------------ECHHHHH--------HHHHHccCCEEEEEECCCHHH
Confidence 0000 111111234567777778765554 2443210 000011123456777888999
Q ss_pred HHHHHHHH
Q 019312 207 LYDYLNKR 214 (343)
Q Consensus 207 L~~RI~~R 214 (343)
|.+||..|
T Consensus 143 l~~Rl~~r 150 (219)
T 1s96_A 143 LDRRLRGR 150 (219)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 98877433
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.76 E-value=4.1e-09 Score=98.54 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=59.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+|+++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i----------~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g~ 73 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHI----------ASGEMVAIIGPNGAGKSTLLRLLTGYLSPS----HGEC-HLLGQ 73 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECCTTSCHHHHHHHHTSSSCCS----SCEE-EETTE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence 5788999999863 34899999998 899999999999999999999999999865 7888 48898
Q ss_pred cccCC
Q 019312 101 DITTN 105 (343)
Q Consensus 101 ~I~T~ 105 (343)
++...
T Consensus 74 ~~~~~ 78 (266)
T 4g1u_C 74 NLNSW 78 (266)
T ss_dssp ETTTS
T ss_pred ECCcC
Confidence 88644
No 34
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.76 E-value=3.9e-09 Score=98.19 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=57.8
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
..+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i----------~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~----~G~I-~~~g 76 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEI----------EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIV-TVFG 76 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECC
Confidence 56889999999953 34899999998 899999999999999999999999998754 6888 4778
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 77 ~~~~ 80 (256)
T 1vpl_A 77 KNVV 80 (256)
T ss_dssp EETT
T ss_pred EECC
Confidence 7775
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.75 E-value=4.9e-09 Score=95.71 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=54.2
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.+++.++++.|+.+...+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g 69 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKI----------ERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIK-HSG 69 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEE----------ETTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEEE-ECS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC----ccEEE-ECC
Confidence 57899999999754445899999998 899999999999999999999999998854 56663 444
No 36
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.75 E-value=3.4e-09 Score=96.39 Aligned_cols=66 Identities=23% Similarity=0.251 Sum_probs=56.4
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.+
T Consensus 5 l~~~~l~~~y~~--~~~l~~vsl~i----------~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 67 (224)
T 2pcj_A 5 LRAENIKKVIRG--YEILKGISLSV----------KKGEFVSIIGASGSGKSTLLYILGLLDAPT----EGKV-FLEGKE 67 (224)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEEECTTSCHHHHHHHHTTSSCCS----EEEE-EETTEE
T ss_pred EEEEeEEEEECC--EeeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEE
Confidence 678899998864 34899999998 899999999999999999999999998854 6888 477887
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 68 ~~~ 70 (224)
T 2pcj_A 68 VDY 70 (224)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 37
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.75 E-value=4.5e-09 Score=102.81 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=61.1
Q ss_pred cceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312 20 QHYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY 97 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy 97 (343)
.-+++.++++.|.... ..+|+++++++ .+|++++|+||||||||||++.|++...|. .|++ .+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i----------~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~----~G~I-~i 87 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHV----------PAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSV-LV 87 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EE
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEE----------cCCCEEEEEcCCCchHHHHHHHHhcCCCCC----ceEE-EE
Confidence 4588999999997532 34899999998 899999999999999999999999998864 6888 58
Q ss_pred ecccccCCC
Q 019312 98 KGLDITTNK 106 (343)
Q Consensus 98 ~gl~I~T~k 106 (343)
.|.++....
T Consensus 88 ~G~~i~~~~ 96 (366)
T 3tui_C 88 DGQELTTLS 96 (366)
T ss_dssp TTEECSSCC
T ss_pred CCEECCcCC
Confidence 899986543
No 38
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.74 E-value=9.2e-09 Score=100.37 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=57.2
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+|+++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~----~G~I-~i~G~ 66 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSL----------DPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEI-SLSGK 66 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEE----------cCCCEEEEECCCCchHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence 4788899999853 34899999998 899999999999999999999999998864 6888 48888
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 67 ~i~ 69 (359)
T 3fvq_A 67 TIF 69 (359)
T ss_dssp EEE
T ss_pred ECc
Confidence 884
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.74 E-value=4.5e-09 Score=97.93 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=56.7
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~----~G~i-~~~g~ 68 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQA----------RAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAI-IVNGQ 68 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence 4788999999953 34899999998 899999999999999999999999998854 6888 47788
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 69 ~~~ 71 (262)
T 1b0u_A 69 NIN 71 (262)
T ss_dssp ECC
T ss_pred Ecc
Confidence 774
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.73 E-value=6.9e-09 Score=107.22 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=62.8
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
+...++++.+|+|.|+...+ +++++++++ ++|++++|+||||||||||++.|++.++|. .|++ .
T Consensus 350 ~~~~~i~~~~v~~~y~~~~~-~l~~isl~i----------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i-~ 413 (598)
T 3qf4_B 350 EVRGEIEFKNVWFSYDKKKP-VLKDITFHI----------KPGQKVALVGPTGSGKTTIVNLLMRFYDVD----RGQI-L 413 (598)
T ss_dssp SCCCCEEEEEEECCSSSSSC-SCCSEEEEC----------CTTCEEEEECCTTSSTTHHHHHHTTSSCCS----EEEE-E
T ss_pred CCCCeEEEEEEEEECCCCCc-cccceEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCcCCC----CeEE-E
Confidence 34578999999999986544 899999998 899999999999999999999999999865 6888 4
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.|+...
T Consensus 414 ~~g~~i~~~ 422 (598)
T 3qf4_B 414 VDGIDIRKI 422 (598)
T ss_dssp ETTEEGGGS
T ss_pred ECCEEhhhC
Confidence 888888643
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.73 E-value=1.1e-08 Score=105.24 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=61.7
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+.+...+++++++++ ++|++++|+||||||||||++.|++.++|. .|++ .+.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i----------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i-~~~ 403 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSI----------PQGKTVALVGRSGSGKSTIANLFTRFYDVD----SGSI-CLD 403 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CCEE-EEC
Confidence 4679999999999864345899999998 899999999999999999999999999865 6888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 404 g~~~~~ 409 (582)
T 3b5x_A 404 GHDVRD 409 (582)
T ss_pred CEEhhh
Confidence 888754
No 42
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.72 E-value=5.1e-09 Score=96.21 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=56.7
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~ 68 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKV----------PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ----KGKI-IFNGQ 68 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCE
Confidence 3788999999964 34899999998 899999999999999999999999998754 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 69 ~~~ 71 (240)
T 1ji0_A 69 DIT 71 (240)
T ss_dssp ECT
T ss_pred ECC
Confidence 774
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.70 E-value=8.1e-09 Score=101.80 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=62.6
Q ss_pred CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
|....+++.++++.|+.+...+|+++++++ .+|++++|+||||||||||++.|++..+ . .|++ .
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~----~G~I-~ 78 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSI----------SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T----EGEI-Q 78 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHHTCSE-E----EEEE-E
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEE----------cCCCEEEEECCCCChHHHHHHHHhCCCC-C----CeEE-E
Confidence 445789999999999865556899999998 8999999999999999999999999865 3 6888 4
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.++...
T Consensus 79 i~G~~i~~~ 87 (390)
T 3gd7_A 79 IDGVSWDSI 87 (390)
T ss_dssp ESSCBTTSS
T ss_pred ECCEECCcC
Confidence 889888644
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.70 E-value=5.3e-09 Score=95.99 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=52.9
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.+++.++++.|......+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~I~-~~g 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSI----------PEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVA-IKG 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTCSEEE----EEEEE-ECS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceEE-ECC
Confidence 37888999999743345899999998 899999999999999999999999988743 56663 444
No 45
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.70 E-value=7.3e-09 Score=96.67 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=55.6
Q ss_pred eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
+++.++++.|.... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++. +.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i----------~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~----~G~I~-~~ 67 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVI----------NEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVL-YD 67 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEEE-ET
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEEE-EC
Confidence 57788999886222 34899999998 899999999999999999999999998754 67884 77
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 68 g~~~~ 72 (266)
T 2yz2_A 68 GERKK 72 (266)
T ss_dssp TEECC
T ss_pred CEECc
Confidence 77764
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.70 E-value=1.3e-08 Score=104.78 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=61.1
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
...+++.+|+|.|+.+...+++++++++ ++|++++|+||||||||||++.|++.++|. .|++ .+.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i----------~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~----~G~i-~~~ 403 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKI----------PAGKTVALVGRSGSGKSTIASLITRFYDID----EGHI-LMD 403 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEE----------CTTCEEEEEECTTSSHHHHHHHHTTTTCCS----EEEE-EET
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhhccCCC----CCeE-EEC
Confidence 4679999999999854344899999998 899999999999999999999999998865 6888 478
Q ss_pred cccccC
Q 019312 99 GLDITT 104 (343)
Q Consensus 99 gl~I~T 104 (343)
|.++..
T Consensus 404 g~~~~~ 409 (582)
T 3b60_A 404 GHDLRE 409 (582)
T ss_dssp TEETTT
T ss_pred CEEccc
Confidence 888753
No 47
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.70 E-value=5.5e-09 Score=96.93 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=56.6
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~----~G~i-~~~g~ 69 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISV----------NKGDVTLIIGPNGSGKSTLINVITGFLKAD----EGRV-YFENK 69 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCE
Confidence 3788999999963 34899999998 899999999999999999999999998854 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 70 ~~~ 72 (257)
T 1g6h_A 70 DIT 72 (257)
T ss_dssp ECT
T ss_pred ECC
Confidence 774
No 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.68 E-value=1.1e-08 Score=95.11 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=57.6
Q ss_pred cceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
..+++.+++|.|.... ..+++++++++ .+|++++|+||||||||||++.|++.+++ .|++ .+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~G~I-~i~ 79 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFI----------PSGTTCALVGHTGSGKSTIAKLLYRFYDA-----EGDI-KIG 79 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCC-----EEEE-EET
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhccCCC-----CeEE-EEC
Confidence 3589999999997542 34899999998 89999999999999999999999998762 4888 478
Q ss_pred ccccc
Q 019312 99 GLDIT 103 (343)
Q Consensus 99 gl~I~ 103 (343)
|.++.
T Consensus 80 g~~i~ 84 (260)
T 2ghi_A 80 GKNVN 84 (260)
T ss_dssp TEEGG
T ss_pred CEEhh
Confidence 88774
No 49
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.67 E-value=5e-08 Score=83.72 Aligned_cols=37 Identities=24% Similarity=0.594 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+++|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g-~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT-CEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC-cEEEeCccc
Confidence 4578999999999999999999999887 666766655
No 50
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.67 E-value=9.2e-09 Score=96.83 Aligned_cols=66 Identities=15% Similarity=0.018 Sum_probs=57.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++ .+.|.
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i----------~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~----~G~I-~~~g~ 83 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQI----------AKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTV-NLFGK 83 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTB
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CeEE-EECCE
Confidence 4889999999964 34899999998 899999999999999999999999998864 6888 47787
Q ss_pred ccc
Q 019312 101 DIT 103 (343)
Q Consensus 101 ~I~ 103 (343)
++.
T Consensus 84 ~~~ 86 (279)
T 2ihy_A 84 MPG 86 (279)
T ss_dssp CCC
T ss_pred Ecc
Confidence 764
No 51
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.67 E-value=1.3e-08 Score=100.09 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=59.3
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+|+++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~----~G~I-~i~G~ 65 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDI----------HEGEFVVFVGPSGCGKSTLLRMIAGLETIT----SGDL-FIGEK 65 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEE----------CCCCEEEEEcCCCchHHHHHHHHHcCCCCC----CeEE-EECCE
Confidence 4788899999963 34899999998 899999999999999999999999999865 6888 47898
Q ss_pred cccCCCC
Q 019312 101 DITTNKI 107 (343)
Q Consensus 101 ~I~T~kp 107 (343)
++....+
T Consensus 66 ~~~~~~~ 72 (381)
T 3rlf_A 66 RMNDTPP 72 (381)
T ss_dssp ECTTCCG
T ss_pred ECCCCCH
Confidence 8865433
No 52
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.66 E-value=1.9e-08 Score=92.65 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=53.3
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. .++++++++ .+ ++++|+||||||||||++.|++.+.|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i----------~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~ 61 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEM----------GR-DYCVLLGPTGAGKSVFLELIAGIVKPD----RGEV-RLNGAD 61 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEE----------CS-SEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred EEEEEEEEEeCC----EEeeeEEEE----------CC-EEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence 467788888852 499999998 88 999999999999999999999998754 6888 478888
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 62 ~~~ 64 (240)
T 2onk_A 62 ITP 64 (240)
T ss_dssp CTT
T ss_pred CCc
Confidence 753
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.66 E-value=1.9e-08 Score=112.73 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=63.7
Q ss_pred CCccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+..+++++.+|+|.||... ..+|+++++++ ++|+.++|+||||||||||++.|.+.++|. .|++
T Consensus 411 ~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i----------~~G~~vaivG~sGsGKSTll~ll~~~~~~~----~G~I- 475 (1321)
T 4f4c_A 411 KIKGDITVENVHFTYPSRPDVPILRGMNLRV----------NAGQTVALVGSSGCGKSTIISLLLRYYDVL----KGKI- 475 (1321)
T ss_dssp CCCCCEEEEEEEECCSSSTTSCSEEEEEEEE----------CTTCEEEEEECSSSCHHHHHHHHTTSSCCS----EEEE-
T ss_pred CCCCcEEEEEeeeeCCCCCCCceeeceEEee----------cCCcEEEEEecCCCcHHHHHHHhccccccc----cCcc-
Confidence 4457899999999999754 45899999998 899999999999999999999999999865 6888
Q ss_pred EEecccccCC
Q 019312 96 VYKGLDITTN 105 (343)
Q Consensus 96 vy~gl~I~T~ 105 (343)
.+.|.||..-
T Consensus 476 ~idG~~i~~~ 485 (1321)
T 4f4c_A 476 TIDGVDVRDI 485 (1321)
T ss_dssp EETTEETTTS
T ss_pred cCCCccchhc
Confidence 4788887543
No 54
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.65 E-value=1.8e-08 Score=98.41 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=57.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.+
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~ 66 (362)
T 2it1_A 4 IKLENIVKKFGN--FTALNNINLKI----------KDGEFMALLGPSGSGKSTLLYTIAGIYKPT----SGKI-YFDEKD 66 (362)
T ss_dssp EEEEEEEEESSS--SEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred EEEEeEEEEECC--EEEEEeeEEEE----------CCCCEEEEECCCCchHHHHHHHHhcCCCCC----ceEE-EECCEE
Confidence 678899999853 34899999998 899999999999999999999999998854 6888 478888
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 67 i~~~ 70 (362)
T 2it1_A 67 VTEL 70 (362)
T ss_dssp CTTS
T ss_pred CCcC
Confidence 8643
No 55
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.64 E-value=1.5e-08 Score=104.59 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=61.1
Q ss_pred ccc-eeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 19 QQH-YSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 19 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
..+ +++.+|+|.|+... ..+++++++++ ++|++++|+||||||||||++.|++.++|. .|++ .
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~vl~~isl~i----------~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~----~G~i-~ 402 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPARPEVPIFQDFSLSI----------PSGSVTALVGPSGSGKSTVLSLLLRLYDPA----SGTI-S 402 (595)
T ss_dssp CCCCEEEEEEEEECSSCTTSEEEEEEEEEE----------CTTCEEEEECCTTSSSTHHHHHHTTSSCCS----EEEE-E
T ss_pred CCCeEEEEEEEEEeCCCCCCccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CcEE-E
Confidence 456 99999999998642 34899999998 899999999999999999999999998865 6888 4
Q ss_pred EecccccC
Q 019312 97 YKGLDITT 104 (343)
Q Consensus 97 y~gl~I~T 104 (343)
+.|.++..
T Consensus 403 ~~g~~i~~ 410 (595)
T 2yl4_A 403 LDGHDIRQ 410 (595)
T ss_dssp ETTEETTT
T ss_pred ECCEEhhh
Confidence 78888754
No 56
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.64 E-value=9.5e-08 Score=84.13 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg-~~~i~~d~~ 52 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACG-YPFIEGDAL 52 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHT-CCEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CEEEeCCcC
Confidence 357999999999999999999999998 788888776
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.63 E-value=1e-08 Score=95.85 Aligned_cols=70 Identities=24% Similarity=0.251 Sum_probs=56.0
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
.-+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++... . -.+.|++ .+.|
T Consensus 19 ~~l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~-~p~~G~I-~~~g 83 (267)
T 2zu0_C 19 HMLSIKDLHVSVED--KAILRGLSLDV----------HPGEVHAIMGPNGSGKSTLSATLAGRED-Y-EVTGGTV-EFKG 83 (267)
T ss_dssp -CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTCTT-C-EEEEEEE-EETT
T ss_pred ceEEEEeEEEEECC--EEEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCC-C-CCCCeEE-EECC
Confidence 45899999999953 34899999998 8999999999999999999999999742 0 0126778 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 84 ~~i~~ 88 (267)
T 2zu0_C 84 KDLLA 88 (267)
T ss_dssp EEGGG
T ss_pred EECCc
Confidence 87754
No 58
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.62 E-value=2.1e-08 Score=97.87 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=57.1
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.+
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~ 66 (359)
T 2yyz_A 4 IRVVNLKKYFGK--VKAVDGVSFEV----------KDGEFVALLGPSGCGKTTTLLMLAGIYKPT----SGEI-YFDDVL 66 (359)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred EEEEEEEEEECC--EEEEeeeEEEE----------cCCCEEEEEcCCCchHHHHHHHHHCCCCCC----ccEE-EECCEE
Confidence 678889988853 34899999998 899999999999999999999999998854 6888 488888
Q ss_pred ccCC
Q 019312 102 ITTN 105 (343)
Q Consensus 102 I~T~ 105 (343)
+...
T Consensus 67 i~~~ 70 (359)
T 2yyz_A 67 VNDI 70 (359)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8543
No 59
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.61 E-value=1.2e-08 Score=94.17 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=54.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh--cCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR--FFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~--~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++. +.| +.|++ .+.|
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p----~~G~I-~~~g 66 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVV----------PKGEVHALMGPNGAGKSTLGKILAGDPEYTV----ERGEI-LLDG 66 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTCTTCEE----EEEEE-EETT
T ss_pred EEEEeEEEEECC--EEEEeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC----CceEE-EECC
Confidence 678899999964 34899999998 89999999999999999999999997 332 26788 4778
Q ss_pred ccccC
Q 019312 100 LDITT 104 (343)
Q Consensus 100 l~I~T 104 (343)
.++..
T Consensus 67 ~~~~~ 71 (250)
T 2d2e_A 67 ENILE 71 (250)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 88753
No 60
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.60 E-value=2.3e-08 Score=97.13 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=55.7
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. . +++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.+
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~~~g~~ 63 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKV----------ESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRI-LLDGKD 63 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEE----------CTTCEEEEECCCTHHHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEE----------cCCCEEEEECCCCccHHHHHHHHHcCCCCC----CcEE-EECCEE
Confidence 567888888853 3 899999998 899999999999999999999999998854 6888 478888
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 64 i~~ 66 (348)
T 3d31_A 64 VTD 66 (348)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 61
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.60 E-value=2.3e-08 Score=97.92 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=58.0
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
.+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~ 73 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTI----------KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRI-YFGDR 73 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCC----ceEE-EECCE
Confidence 4788999999953 34899999998 899999999999999999999999998854 6888 47888
Q ss_pred cccCC
Q 019312 101 DITTN 105 (343)
Q Consensus 101 ~I~T~ 105 (343)
++...
T Consensus 74 ~i~~~ 78 (372)
T 1v43_A 74 DVTYL 78 (372)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 88543
No 62
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.58 E-value=4.4e-08 Score=88.26 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=40.3
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccC
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~ 116 (343)
+.|+++++++ .+|++++|+||||||||||++.|++.++ |.+. + |.++.+..+...++.++.
T Consensus 11 ~~l~~isl~i----------~~G~~~~lvGpsGsGKSTLl~~L~g~~p-------G~i~-~-g~~~~~~~~~~~~~~~i~ 71 (218)
T 1z6g_A 11 SSGLVPRGSM----------NNIYPLVICGPSGVGKGTLIKKLLNEFP-------NYFY-F-SVSCTTRKKREKEKEGVD 71 (218)
T ss_dssp ---------------------CCCCEEEECSTTSSHHHHHHHHHHHST-------TTEE-E-CCCEECSCCCSSCCBTTT
T ss_pred ccccCCceec----------CCCCEEEEECCCCCCHHHHHHHHHhhCC-------CcEE-E-eecccCCCCCcccccCCe
Confidence 4678999997 8899999999999999999999999873 4553 4 777777655544555655
Q ss_pred ccc
Q 019312 117 HHL 119 (343)
Q Consensus 117 h~l 119 (343)
+.+
T Consensus 72 ~~~ 74 (218)
T 1z6g_A 72 YYF 74 (218)
T ss_dssp BEE
T ss_pred EEE
Confidence 443
No 63
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.57 E-value=9.2e-08 Score=84.43 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++++++|+||+|||||||++.|++.++ ..+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG-LEFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC-CEEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC-CeEEccccc
Confidence 5689999999999999999999999986 555555544
No 64
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.57 E-value=2.5e-08 Score=97.07 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=56.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|......+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.+
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINI----------ENGERFGILGPSGAGKTTFMRIIAGLDVPS----TGEL-YFDDRL 68 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEE----------CTTCEEEEECSCHHHHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred EEEEeEEEEECCEeeeeEeceEEEE----------CCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence 6788899888532111899999998 899999999999999999999999998854 6888 478888
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 69 i~~ 71 (353)
T 1oxx_K 69 VAS 71 (353)
T ss_dssp EEE
T ss_pred Ccc
Confidence 754
No 65
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.56 E-value=3e-07 Score=90.86 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
..+.+|+|+|++||||||+++.|++.++ ..+|+.|.+. .|.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~--------------------------------------~~~ 296 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG-YVHVNRDTLG--------------------------------------SWQ 296 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT-CEECCGGGSC--------------------------------------SHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC-cEEEccchHH--------------------------------------HHH
Confidence 5578999999999999999999999987 7777776541 011
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~ 216 (343)
. ....+.+....|+. ||+.+++........ +. .+.....+.+.+++|+++.+++.+|+..|..
T Consensus 297 ~-~~~~~~~~l~~g~~-vIiD~~~~~~~~r~~---------~~------~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 297 R-CVSSCQAALRQGKR-VVIDNTNPDVPSRAR---------YI------QCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp H-HHHHHHHHHHTTCC-EEEESCCCSHHHHHH---------HH------HHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhcCCc-EEEeCCCCCHHHHHH---------HH------HHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 1 22233344455664 556666543211100 00 0000113456789999999999999999975
No 66
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.56 E-value=2.8e-08 Score=97.34 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=56.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++...|. .|++ .+.|.+
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~ 66 (372)
T 1g29_1 4 VRLVDVWKVFGE--VTAVREMSLEV----------KDGEFMILLGPSGCGKTTTLRMIAGLEEPS----RGQI-YIGDKL 66 (372)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred EEEEeEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCcHHHHHHHHHHcCCCCC----ccEE-EECCEE
Confidence 678889988853 34899999998 899999999999999999999999998854 6888 478888
Q ss_pred ccC
Q 019312 102 ITT 104 (343)
Q Consensus 102 I~T 104 (343)
+..
T Consensus 67 ~~~ 69 (372)
T 1g29_1 67 VAD 69 (372)
T ss_dssp EEE
T ss_pred Ccc
Confidence 754
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.56 E-value=4.6e-08 Score=109.28 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=63.1
Q ss_pred CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
..+.+++.+|+|.|+.+. ..+|+++++++ ++|++++|+||||||||||++.|++.++|. .|++ .
T Consensus 384 ~~g~i~~~~v~~~y~~~~~~~vL~~isl~i----------~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~----~G~i-~ 448 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKV----------KSGQTVALVGNSGCGKSTTVQLMQRLYDPL----DGMV-S 448 (1284)
T ss_dssp CCCCEEEEEEEECCSSTTSCCSEEEEEEEE----------CTTCEEEEECCSSSSHHHHHHHTTTSSCCS----EEEE-E
T ss_pred CCCeEEEEEEEEEcCCCCCCcceecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-E
Confidence 457899999999998653 45999999998 899999999999999999999999999864 6888 4
Q ss_pred EecccccCC
Q 019312 97 YKGLDITTN 105 (343)
Q Consensus 97 y~gl~I~T~ 105 (343)
+.|.|+...
T Consensus 449 i~g~~i~~~ 457 (1284)
T 3g5u_A 449 IDGQDIRTI 457 (1284)
T ss_dssp ETTEEGGGS
T ss_pred ECCEEHHhC
Confidence 788888654
No 68
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.55 E-value=1.5e-07 Score=82.43 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|.+++|+||+||||||+++.|++.+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36789999999999999999999999884
No 69
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.51 E-value=1.2e-07 Score=80.94 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=66.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHh-hcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccC---hhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLAT-RFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFT---PDDF 135 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~-~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s---~~~f 135 (343)
.+|+|+|++||||||+++.|++ .++ ..+|+.|.+ ...+. ..+ .. .. . .|+ ...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~-~~~i~~d~~--r~~~~---~~~-~~--------~~------~-~~~~~~~~~~ 60 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDY--RQSIM---AHE-ER--------DE------Y-KYTKKKEGIV 60 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT-EEEECHHHH--HHHHT---TSC-CG--------GG------C-CCCHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC-cEEecHHHH--HHHhh---CCC-cc--------ch------h-hhchhhhhHH
Confidence 5899999999999999999998 565 667776644 11110 000 00 00 0 111 1223
Q ss_pred hhhhhHHHHHHH---hcCCeeEEEcCchh---hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHH
Q 019312 136 RLQADNAISDII---SRKKTPLLVGGSNS---FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYD 209 (343)
Q Consensus 136 ~~~a~~~i~~i~---~~g~~pIlvGGT~l---Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~ 209 (343)
.......+.... +.|+ .+|+.|+.+ |.+.+..- + ....+++.+++|+++.+++.+
T Consensus 61 ~~~~~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~~--------~----------~~~~~~~~~i~l~~~~~~~~~ 121 (181)
T 1ly1_A 61 TGMQFDTAKSILYGGDSVK-GVIISDTNLNPERRLAWETF--------A----------KEYGWKVEHKVFDVPWTELVK 121 (181)
T ss_dssp HHHHHHHHHHHHTSCSSCC-EEEECSCCCSHHHHHHHHHH--------H----------HHHTCEEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCC-eEEEeCCCCCHHHHHHHHHH--------H----------HHcCCCEEEEEEeCCHHHHHH
Confidence 333445566665 5665 566666543 22222110 0 001245568899999999999
Q ss_pred HHHHHHH
Q 019312 210 YLNKRVD 216 (343)
Q Consensus 210 RI~~Rv~ 216 (343)
|+.+|-.
T Consensus 122 R~~~R~~ 128 (181)
T 1ly1_A 122 RNSKRGT 128 (181)
T ss_dssp HHTTCGG
T ss_pred HHhcccc
Confidence 9988863
No 70
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.51 E-value=4e-08 Score=91.12 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=49.6
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+++.++++.|... ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++
T Consensus 5 l~i~~l~~~y~~~-~~vl~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~I 62 (253)
T 2nq2_C 5 LSVENLGFYYQAE-NFLFQQLNFDL----------NKGDILAVLGQNGCGKSTLLDLLLGIHRPI----QGKI 62 (253)
T ss_dssp EEEEEEEEEETTT-TEEEEEEEEEE----------ETTCEEEEECCSSSSHHHHHHHHTTSSCCS----EEEE
T ss_pred EEEeeEEEEeCCC-CeEEEEEEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence 6788999998622 34899999998 899999999999999999999999998754 4665
No 71
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.51 E-value=8.1e-08 Score=107.32 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 17 QQQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
+..+.+++.+|+|.|+.+. ..+|+++++++ ++|++++|+||||||||||++.|++..+|. .|++
T Consensus 1026 ~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i----------~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~----~G~I- 1090 (1284)
T 3g5u_A 1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEV----------KKGQTLALVGSSGCGKSTVVQLLERFYDPM----AGSV- 1090 (1284)
T ss_dssp TTSCCEEEEEEEBCCSCGGGCCSBSSCCEEE----------CSSSEEEEECSSSTTHHHHHHHHTTSSCCS----EEEE-
T ss_pred CCCCcEEEEEEEEECCCCCCCeeecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-
Confidence 3457899999999998653 35899999998 999999999999999999999999998865 6888
Q ss_pred EEecccccCC
Q 019312 96 VYKGLDITTN 105 (343)
Q Consensus 96 vy~gl~I~T~ 105 (343)
.+.|.|+...
T Consensus 1091 ~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1091 FLDGKEIKQL 1100 (1284)
T ss_dssp ESSSSCTTSS
T ss_pred EECCEEcccC
Confidence 4888888643
No 72
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.49 E-value=5.2e-07 Score=79.66 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=36.3
Q ss_pred CCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 53 PAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 53 ~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+..+.++.+++|+|++||||||+++.|++.++...+|+.|.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence 345678899999999999999999999998833788999987
No 73
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.49 E-value=4.6e-08 Score=91.31 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=53.9
Q ss_pred eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
+++.++++.|... ...+++++++++ . |++++|+||||||||||++.|++.+ |. .|++ .+.|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i----------~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~----~G~I-~~~g 64 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEV----------N-GEKVIILGPNGSGKTTLLRAISGLL-PY----SGNI-FING 64 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEE----------C-SSEEEEECCTTSSHHHHHHHHTTSS-CC----EEEE-EETT
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEE----------C-CEEEEEECCCCCCHHHHHHHHhCCC-CC----CcEE-EECC
Confidence 4677888888642 134899999998 8 9999999999999999999999988 65 6888 4778
Q ss_pred cccc
Q 019312 100 LDIT 103 (343)
Q Consensus 100 l~I~ 103 (343)
.++.
T Consensus 65 ~~~~ 68 (263)
T 2pjz_A 65 MEVR 68 (263)
T ss_dssp EEGG
T ss_pred EECc
Confidence 7775
No 74
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.49 E-value=6.1e-07 Score=76.82 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|+|+|++||||||+++.|++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999999987
No 75
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.48 E-value=1.6e-07 Score=81.44 Aligned_cols=37 Identities=16% Similarity=0.438 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~ 43 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG-YTHLSTGDL 43 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHH
Confidence 4567999999999999999999999998 788888776
No 76
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.47 E-value=3.7e-07 Score=83.92 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+||+||||||+++.|++.++ ...++.|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg-~~~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN-WRLLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC-CCcCCCCce
Confidence 4578999999999999999999999988 778888888
No 77
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.47 E-value=2.5e-07 Score=81.92 Aligned_cols=56 Identities=21% Similarity=0.164 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLG 121 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~ 121 (343)
+++++++|+||||||||||++.|++.++ . .. ......+|.+|...+..++.+++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~-~------~~--~~~v~~ttr~~~~g~~~g~~~~~~~ 57 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS-S------IF--GFSVSHTTRNPRPGEEDGKDYYFVT 57 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT-T------TE--EECCCEECSCCCTTCCBTTTBEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-h------hc--eeeeeeeccCCCCcccCCceEEEcc
Confidence 3578999999999999999999999875 2 11 1122234555555556666555443
No 78
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.47 E-value=6e-07 Score=78.76 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g-~~~i~~d~~ 49 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAGDL 49 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEeHHHH
Confidence 4567899999999999999999999998 888888865
No 79
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.46 E-value=2.2e-07 Score=80.43 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~i~~D~~ 39 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-LPLLSKDAF 39 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-CeEecHHHH
Confidence 3567999999999999999999999987 777776654
No 80
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.45 E-value=6.2e-07 Score=82.33 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDF 135 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f 135 (343)
..+.+|+|+|++||||||+++.|++.++. ..+++.|.+ ...+ +...++. .........+....+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~--r~~~------~~~~~i~-------~~~g~~~~~~~~~~~ 94 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF--RSQH------PHYLELQ-------QEYGKDSVEYTKDFA 94 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG--GTTS------TTHHHHH-------TTCSSTTHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH--HHhc------hhHHHHH-------HHcCchHHHHhhHHH
Confidence 55789999999999999999999999862 234454443 1111 1000000 000000001111112
Q ss_pred hhhhhHHHHHHHhcCCeeEEEcCchh--hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312 136 RLQADNAISDIISRKKTPLLVGGSNS--FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK 213 (343)
Q Consensus 136 ~~~a~~~i~~i~~~g~~pIlvGGT~l--Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 213 (343)
.+.....+..+.+.|...|+.|+-+- +...+..- +. ...+.+.++++.++.+++.+|+..
T Consensus 95 ~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~--------l~----------~~g~~v~lv~l~~~~e~~~~R~~~ 156 (253)
T 2p5t_B 95 GKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL--------LK----------NKGYEVQLALIATKPELSYLSTLI 156 (253)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH--------HH----------HTTCEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHH--------HH----------HCCCcEEEEEEeCCHHHHHHHHHH
Confidence 33445566666666765555554221 11222110 11 012456667889999999999999
Q ss_pred HHHHHH
Q 019312 214 RVDDML 219 (343)
Q Consensus 214 Rv~~Ml 219 (343)
|..++.
T Consensus 157 R~~~~~ 162 (253)
T 2p5t_B 157 RYEELY 162 (253)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987654
No 81
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.43 E-value=2e-07 Score=80.36 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++++|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~-~~~~~~d~~ 45 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG-LKYINVGDL 45 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC-CeEEEHHHH
Confidence 4567899999999999999999999998 777777765
No 82
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.41 E-value=3.7e-08 Score=94.06 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=49.4
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
..+++.+|+|.|+ ..+|+++++++ ++|++++|+||||||||||++.|++.+. +.|+
T Consensus 100 ~~i~~~~vs~~y~---~~vL~~vsl~i----------~~Ge~vaIvGpsGsGKSTLl~lL~gl~~-G~I~ 155 (305)
T 2v9p_A 100 TFFNYQNIELITF---INALKLWLKGI----------PKKNCLAFIGPPNTGKSMLCNSLIHFLG-GSVL 155 (305)
T ss_dssp HHHHHTTCCHHHH---HHHHHHHHHTC----------TTCSEEEEECSSSSSHHHHHHHHHHHHT-CEEE
T ss_pred CeEEEEEEEEEcC---hhhhccceEEe----------cCCCEEEEECCCCCcHHHHHHHHhhhcC-ceEE
Confidence 4588999999997 35899999997 8999999999999999999999999984 6553
No 83
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.39 E-value=9.1e-07 Score=81.59 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc---CCCcee--cCCceEEEecccccCCCCCcccccccCccccccccCCCcccCh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF---FPSEII--NSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTP 132 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~---~~~eII--s~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~ 132 (343)
++.+|+|+|++||||||+++.|++.+ + ..++ +.|.+. +.+.+ .. ....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~--------------~~l~~--------~~----~~~e 55 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIR--------------ESFPV--------WK----EKYE 55 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHH--------------TTSSS--------CC----GGGH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHH--------------HHHhh--------hh----HHHH
Confidence 35799999999999999999999973 3 3333 444330 00101 01 1112
Q ss_pred hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH
Q 019312 133 DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN 212 (343)
Q Consensus 133 ~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~ 212 (343)
..+.......+....+. ..||+.|+.+|- ..... +. .+.....+..++++|+++.+.+.+|+.
T Consensus 56 ~~~~~~~~~~i~~~l~~--~~vIiD~~~~~~-~~~~~--------l~------~~a~~~~~~~~vi~l~~~~e~~~~R~~ 118 (260)
T 3a4m_A 56 EFIKKSTYRLIDSALKN--YWVIVDDTNYYN-SMRRD--------LI------NIAKKYNKNYAIIYLKASLDVLIRRNI 118 (260)
T ss_dssp HHHHHHHHHHHHHHHTT--SEEEECSCCCSH-HHHHH--------HH------HHHHHTTCEEEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC--CEEEEeCCcccH-HHHHH--------HH------HHHHHcCCCEEEEEEeCCHHHHHHHHH
Confidence 22333334555665544 467777765542 11110 00 000011245678999999999999999
Q ss_pred HHH
Q 019312 213 KRV 215 (343)
Q Consensus 213 ~Rv 215 (343)
+|-
T Consensus 119 ~R~ 121 (260)
T 3a4m_A 119 ERG 121 (260)
T ss_dssp HTT
T ss_pred hCC
Confidence 885
No 84
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.39 E-value=1e-07 Score=90.18 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=40.1
Q ss_pred ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+..+++.+++|.+ ..+++++++++ .+|++++|+||||||||||++.|++.++|. .|++
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i----------~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~----~G~I 95 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKI----------ERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKI 95 (290)
T ss_dssp ------------C----CCSEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHTTSSCEE----EEEE
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE
Confidence 3568889999863 34899999998 899999999999999999999999998743 5666
No 85
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.38 E-value=5.6e-07 Score=84.65 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC-CCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF-PSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~-~~eIIs~Ds~ 94 (343)
..+.+|+|+||+||||||+++.|++.++ ...+||.|.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4578999999999999999999999884 2566776654
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.38 E-value=9.6e-07 Score=77.82 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+||+||||||+++.|++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999885
No 87
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.36 E-value=5e-07 Score=76.99 Aligned_cols=111 Identities=19% Similarity=0.355 Sum_probs=66.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ 138 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~ 138 (343)
..+|+|+|+.||||||+++.|++.++ .++|+.|.+ ++.. .+ .+ ..+ ++ . .+....|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg-~~~id~D~~--~~~~-~g--~~-~~~-------~~------~-~~g~~~~~~~ 65 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK-LEVLDTDMI--ISER-VG--LS-VRE-------IF------E-ELGEDNFRMF 65 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT-CCEEEHHHH--HHHH-HT--SC-HHH-------HH------H-HTCHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHH--HHHH-hC--CC-HHH-------HH------H-HhCHHHHHHH
Confidence 57999999999999999999999998 888888776 2211 01 00 000 00 0 1223344444
Q ss_pred hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
..+.+..+.+.+...|+++|.++-+ + .. + +....+++|++|.+.+.+|+.+|
T Consensus 66 ~~~~l~~~~~~~~~~Vi~~g~g~~~--------~-~~--l-------------~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 66 EKNLIDELKTLKTPHVISTGGGIVM--------H-EN--L-------------KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp HHHHHHHHHTCSSCCEEECCGGGGG--------C-GG--G-------------TTSEEEEEEECCHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCCEEEECCCCEec--------h-hH--H-------------hcCCEEEEEECCHHHHHHHHhcc
Confidence 4455666665554315554433211 1 00 1 11235789999999999999877
No 88
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.35 E-value=2.1e-07 Score=86.08 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=51.2
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
+++.++++. .+++++++++ .+|++++|+||||||||||++.|++.++| + |++. +.|.+
T Consensus 5 l~~~~l~~~------~vl~~vsl~i----------~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p----~-G~i~-~~g~~ 62 (249)
T 2qi9_C 5 MQLQDVAES------TRLGPLSGEV----------RAGEILHLVGPNGAGKSTLLARMAGMTSG----K-GSIQ-FAGQP 62 (249)
T ss_dssp EEEEEEEET------TTEEEEEEEE----------ETTCEEEEECCTTSSHHHHHHHHTTSSCC----E-EEEE-ETTEE
T ss_pred EEEEceEEE------EEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCC----C-eEEE-ECCEE
Confidence 677788877 3899999998 89999999999999999999999999873 3 7774 77877
Q ss_pred cc
Q 019312 102 IT 103 (343)
Q Consensus 102 I~ 103 (343)
+.
T Consensus 63 ~~ 64 (249)
T 2qi9_C 63 LE 64 (249)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 89
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.34 E-value=4e-07 Score=80.84 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|++++|+||||||||||++.|++.++
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 48899999999999999999999999885
No 90
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.33 E-value=1.1e-07 Score=81.71 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=30.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~-~~~~d~d~~ 38 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD-LVFLDSDFL 38 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcccHH
Confidence 4689999999999999999999998 788887766
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.31 E-value=3.7e-07 Score=99.12 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=52.9
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ 95 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q 95 (343)
.-+++.+++|.|+.....+++++++++ .+|++++|+||||||||||++.|++.+.|. .|++.
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I----------~~GeivaIiGpNGSGKSTLLklLaGll~P~----sG~I~ 731 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQC----------SLSSRIAVIGPNGAGKSTLINVLTGELLPT----SGEVY 731 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEE----------ETTCEEEECSCCCHHHHHHHHHHTTSSCCS----EEEEE
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE
Confidence 358899999999754345899999998 899999999999999999999999998754 56663
No 92
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.30 E-value=2.7e-07 Score=77.68 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=28.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+||+||||||+++.| +.++ ..+++.|..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g-~~~i~~~~~ 34 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG-AKVIVMSDV 34 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT-CEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC-CcEEEHhHH
Confidence 48999999999999999999 7777 777776554
No 93
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.30 E-value=2.3e-07 Score=80.20 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=31.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCEEeCchH
Confidence 4699999999999999999999998 888888876
No 94
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.30 E-value=1.5e-06 Score=74.61 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
.++.+|+|+|+.||||||+++.|++.++ ..++
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i 34 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP-GSFV 34 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST-TCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC-CCEE
Confidence 3567999999999999999999999987 5544
No 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.29 E-value=1.5e-06 Score=79.57 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCc----------eecCCceEEEec
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE----------IINSDKMQVYKG 99 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e----------IIs~Ds~qvy~g 99 (343)
++.+|+|+|++||||||+++.|++.++ .. +|+.|.+ |+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg-~~~~d~~~~~~~~i~~D~~--~~~ 69 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSF--YRV 69 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-GGGSCGGGCSEEEEEGGGG--BCC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh-hhcccccCCceEEEecCcc--ccc
Confidence 456899999999999999999999887 55 6888887 553
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.28 E-value=3.1e-07 Score=83.74 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=26.5
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+|+++++++ .++.+++|+||||||||||++.|++.++
T Consensus 12 ~~~l~~isl~i----------~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 12 DLGTENLYFQS----------MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---------------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceeecceeccC----------CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34789999997 7889999999999999999999999875
No 97
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.28 E-value=1.7e-06 Score=74.48 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=31.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG-YTHLSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHH
Confidence 57899999999999999999999998 888888876
No 98
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.28 E-value=3.2e-07 Score=78.12 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=30.7
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CcEEcccHH
Confidence 5799999999999999999999998 788887766
No 99
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.26 E-value=6.5e-06 Score=71.26 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+|++||||||+++.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999875
No 100
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.26 E-value=3.4e-07 Score=88.90 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=47.8
Q ss_pred eecccCCc---CCccccccc---------ccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312 23 SSFYSPFL---HPKRRRSRW---------RKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN 90 (343)
Q Consensus 23 ~~~~~~~~---~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs 90 (343)
++.+|+|. |+...+.+| +.+++++ .++.+++|+||||||||||++.|++.+++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i----------~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---- 202 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAV----------QLERVIVVAGETGSGKTTLMKALMQEIPFD---- 202 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHH----------HTTCCEEEEESSSSCHHHHHHHHHTTSCTT----
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHH----------hcCCEEEEECCCCCCHHHHHHHHHhcCCCC----
Confidence 77889998 875333455 8888887 889999999999999999999999998853
Q ss_pred CCce
Q 019312 91 SDKM 94 (343)
Q Consensus 91 ~Ds~ 94 (343)
.+.+
T Consensus 203 ~g~I 206 (361)
T 2gza_A 203 QRLI 206 (361)
T ss_dssp SCEE
T ss_pred ceEE
Confidence 4666
No 101
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.22 E-value=4e-07 Score=77.27 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCEEECcHH
Confidence 689999999999999999999998 778877766
No 102
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.22 E-value=4e-06 Score=74.76 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+..+|+|.|+.||||||+++.||+.++ .++++ +.+
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg-~~~~D-~~~ 39 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYN-IPLYS-KEL 39 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTT-CCEEC-HHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhC-cCEEC-HHH
Confidence 356999999999999999999999999 88776 544
No 103
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.19 E-value=5.8e-07 Score=77.55 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=41.6
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.++..+++++ .+|.+++|+||||||||||++.|++.+ |. .|.+. +.|.++.
T Consensus 21 ~~l~~vsl~i----------~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~----~G~V~-~~g~~i~ 71 (158)
T 1htw_A 21 FAEILLKLHT----------EKAIMVYLNGDLGAGKTTLTRGMLQGI-GH----QGNVK-SPTYTLV 71 (158)
T ss_dssp HHHHHHHHCC----------SSCEEEEEECSTTSSHHHHHHHHHHHT-TC----CSCCC-CCTTTCE
T ss_pred HHHhcccccc----------CCCCEEEEECCCCCCHHHHHHHHHHhC-CC----CCeEE-ECCEeee
Confidence 4678889987 889999999999999999999999998 44 56663 5566553
No 104
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.18 E-value=2.5e-06 Score=79.46 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=66.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
.+|+|+|++||||||+++.|++.+....+|+.|.+ ...+. .. +. +.. +..... ....+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~--r~~~~--~~--~~----g~~----~~~~~~----~~~~~~~~~ 64 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY--RQSIM--AH--EE----RDE----YKYTKK----KEGIVTGMQ 64 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH--HHHHT--TS--CC----CC-------CCHH----HHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH--HHHhc--cC--Cc----ccc----cccchh----hhhHHHHHH
Confidence 58999999999999999999997532677877743 11111 00 00 000 000000 011122333
Q ss_pred hHHHHHHH---hcCCeeEEEcCchhh---HHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312 140 DNAISDII---SRKKTPLLVGGSNSF---IYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK 213 (343)
Q Consensus 140 ~~~i~~i~---~~g~~pIlvGGT~lY---~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~ 213 (343)
.+.+.... +.|+ .+|+.|+.+. .+.+.. +.....++..+++|+++.+++.+|+.+
T Consensus 65 ~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~------------------~~~~~~~~~~~i~l~~~~e~~~~R~~~ 125 (301)
T 1ltq_A 65 FDTAKSILYGGDSVK-GVIISDTNLNPERRLAWET------------------FAKEYGWKVEHKVFDVPWTELVKRNSK 125 (301)
T ss_dssp HHHHHHHTTSCTTCC-EEEECSCCCCHHHHHHHHH------------------HHHHTTCEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCC-EEEEeCCCCCHHHHHHHHH------------------HHHHcCCcEEEEEEECCHHHHHHHHHh
Confidence 44555555 5555 5677776542 111110 000112456789999999999999998
Q ss_pred HH
Q 019312 214 RV 215 (343)
Q Consensus 214 Rv 215 (343)
|-
T Consensus 126 R~ 127 (301)
T 1ltq_A 126 RG 127 (301)
T ss_dssp CG
T ss_pred cc
Confidence 86
No 105
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.18 E-value=1.9e-06 Score=74.75 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~ 46 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG-FTHLSTGEL 46 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHH
Confidence 457999999999999999999999998 888888876
No 106
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.08 E-value=1.9e-06 Score=78.31 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
...++++|+|+||.||||+|++..|++.++ ...||.|.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g-~~hIstGdl 63 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH-FNHLSSGDL 63 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC-CEEECHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC-CceEcHHHH
Confidence 346788999999999999999999999999 888998887
No 107
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.08 E-value=1.1e-06 Score=84.47 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=45.6
Q ss_pred ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
+.+++| | ..+++.+++++ .++++++|+||||||||||++.|++.+++. .+.+. +.|.
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i----------~~g~~v~i~G~~GsGKTTll~~l~g~~~~~----~g~i~-i~~~ 207 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGI----------AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE----ERIIS-IEDT 207 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHH----------HHTCCEEEEESTTSCHHHHHHHGGGGSCTT----SCEEE-EESS
T ss_pred cCchhh-H----HHHHhhhhhhc----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcEEE-ECCe
Confidence 667777 5 34788889887 788999999999999999999999998853 56663 4443
No 108
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.06 E-value=4e-06 Score=72.70 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+++|+||||||||||++.|++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC
Confidence 46899999999999999999998654
No 109
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.05 E-value=7e-06 Score=70.61 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++.+|+|+|++||||||+++.|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999987
No 110
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.04 E-value=5.3e-06 Score=78.61 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccc-ccccCCCcccChhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL-GEFVPDDVEFTPDDF 135 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li-~~~~~~~~~~s~~~f 135 (343)
..+++++|+|| ||+||...|...++ +.+ ..-.+.+|..|.+.|..|+.||++ +.-.+.. ....+.|
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~-------~~~--~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~-~i~~g~f 169 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP-------DKF--GSCVPHTTRPKREYEIDGRDYHFVSSREKMEK-DIQAHKF 169 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT-------TTE--ECCCCEECSCCCTTCCBTTTBEECSCHHHHHH-HHHTTCE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc-------cce--eeeeeecccCCCCccccCceeEecCCHHHHHH-HHHCCCc
Confidence 45689999999 79999999998765 222 334567899999999999999998 5444433 3334444
Q ss_pred hhh----------hhHHHHHHHhcCCeeEEEc
Q 019312 136 RLQ----------ADNAISDIISRKKTPLLVG 157 (343)
Q Consensus 136 ~~~----------a~~~i~~i~~~g~~pIlvG 157 (343)
.+. ..+.|.++.++|+.+|+-.
T Consensus 170 lE~~~~~g~~YGt~~~~V~~~~~~G~~vildi 201 (295)
T 1kjw_A 170 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDV 201 (295)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred EEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence 443 4567888899999877753
No 111
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.04 E-value=8e-06 Score=76.36 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+.+|+|+|++||||||+++.|+ .++ ..+|+.|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg-~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLG-AYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHT-CEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCC-CcEEehhHH
Confidence 456789999999999999999999 467 788888877
No 112
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.03 E-value=1e-05 Score=69.41 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=24.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|+|+|++||||||+++.|++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 113
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.99 E-value=8.4e-06 Score=74.04 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|.||+||||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999987
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.98 E-value=3.4e-06 Score=72.93 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=26.2
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|.+++|+||||||||||++.|++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 46789999999999999999999999854
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.97 E-value=2.2e-06 Score=72.90 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=30.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~-~~~id~d~~ 38 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQE 38 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC-CCEEeccHH
Confidence 57899999999999999999999988 666666554
No 116
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.93 E-value=4.4e-06 Score=71.72 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=23.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+|+|+|++||||||+++.|++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999886
No 117
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.93 E-value=3.1e-06 Score=74.56 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~ 94 (343)
.++.+++|+||||||||||++.|++.+++ ..+|+.|..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 56889999999999999999999998763 345666655
No 118
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.91 E-value=9e-06 Score=82.14 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=42.9
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT 104 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T 104 (343)
+++++++++ .+ .+++|+||||||||||++.|++.+.|. .|++. +.|.++..
T Consensus 19 ~l~~vsl~i----------~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~I~-~~g~~~~~ 69 (483)
T 3euj_A 19 GFFARTFDF----------DE-LVTTLSGGNGAGKSTTMAGFVTALIPD----LTLLN-FRNTTEAG 69 (483)
T ss_dssp TEEEEEEEC----------CS-SEEEEECCTTSSHHHHHHHHHHHHCCC----TTTCC-CCCTTSCS
T ss_pred cccceEEEE----------cc-ceEEEECCCCCcHHHHHHHHhcCCCCC----CCEEE-ECCEEccc
Confidence 578999997 77 999999999999999999999998754 67773 67777654
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.90 E-value=6e-06 Score=71.21 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHH
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la 80 (343)
.+|++++|+||||||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 789999999999999999999854
No 120
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.90 E-value=4e-06 Score=74.50 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=32.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g-~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ-WHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCcce
Confidence 46899999999999999999999998 888999988
No 121
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.89 E-value=2.8e-05 Score=71.27 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL 100 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl 100 (343)
++.+|+|+||+||||||+++.|++.++ ..+++.|.+ |+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg-~~~~d~g~~--~r~~ 47 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG-ARYLDTGAM--YRIA 47 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCCcH--HHHH
Confidence 457999999999999999999999998 888999988 7664
No 122
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.89 E-value=3.4e-06 Score=79.97 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccccccc-CCCcccChhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFV-PDDVEFTPDDF 135 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~-~~~~~~s~~~f 135 (343)
...+.|+|+|| ||+||...|...++ |.+ ..-.+.+|.+|...|..|+.||++...+ ... ....+.|
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p-------~~f--~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~-~i~~~~f 164 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYP-------DKF--GSCVPHTTRPKREYEVDGRDYHFVSSREQMER-DIQNHLF 164 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCT-------TTE--ECCCCEECSCCCTTCCBTTTBEECSCHHHHHH-HHHTTCE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhCh-------hhc--cccccCCccCCcCCccCCccccccCCHHHHHH-HHhcCce
Confidence 45678999999 49999999999876 322 3346678999999999999999984322 222 2222333
Q ss_pred hh----------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHH
Q 019312 136 RL----------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQ 205 (343)
Q Consensus 136 ~~----------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re 205 (343)
.+ ...+.|.++.++|+.+||.- |+... ..+.....+.+.+|..+++.+
T Consensus 165 lE~a~~~gn~YGT~~~~V~~~~~~gk~viLdi--------------d~qg~--------~~lk~~~~~pi~IFI~PpS~e 222 (292)
T 3tvt_A 165 IEAGQYNDNLYGTSVASVREVAEKGKHCILDV--------------SGNAI--------KRLQVAQLYPVAVFIKPKSVD 222 (292)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHTCEEEECC--------------CTHHH--------HHHHHTTCCCEEEEECCSCHH
T ss_pred EEEEEEccceeEEehHHHHHHHHcCCcEEEec--------------cchhh--------hhcccccccceEEEEECCCHH
Confidence 33 33567888889999877632 22210 001111123345566677899
Q ss_pred HHHHHHHHHH
Q 019312 206 LLYDYLNKRV 215 (343)
Q Consensus 206 ~L~~RI~~Rv 215 (343)
+|.+|+..|.
T Consensus 223 ~L~~r~~~r~ 232 (292)
T 3tvt_A 223 SVMEMNRRMT 232 (292)
T ss_dssp HHHHTCTTSC
T ss_pred HHHHHHhCCC
Confidence 9998876653
No 123
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.88 E-value=6.9e-06 Score=81.92 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=47.0
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
..+++.++++.|.++.+ +++++ +++ .+|.+++|+||||||||||++.|++..++
T Consensus 130 ~~l~~~~v~~~~~tg~~-vld~v-l~i----------~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR-AINAL-LTV----------GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CTTTSCCCCSBCCCSCH-HHHHH-SCC----------BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CceEEeccceecCCCce-EEeee-EEe----------cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45778899999876543 88999 887 89999999999999999999999999874
No 124
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.88 E-value=7.9e-06 Score=68.97 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-YPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-CCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CeeecCccc
Confidence 4799999999999999999999998 777777755
No 125
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.86 E-value=8.2e-06 Score=83.36 Aligned_cols=49 Identities=24% Similarity=0.153 Sum_probs=39.9
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
.++++.|... ..++.+++ ++ .+|++++|+||||||||||++.|++.+.|
T Consensus 25 ~~ls~~yg~~-~~~l~~vs-~i----------~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 25 EDCVHRYGVN-AFVLYRLP-VV----------KEGMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CCEEEECSTT-CCEEECCC-CC----------CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cCcEEEECCc-cccccCcC-cC----------CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3778888532 23677777 65 88999999999999999999999998864
No 126
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.86 E-value=2.8e-05 Score=70.70 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK 93 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds 93 (343)
+..+|+|.|+.||||||+++.||+.++ .++++.|-
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg-~~~~d~~~ 47 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG-IHFYDDDI 47 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT-CEEECHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC-CcEEcHHH
Confidence 356999999999999999999999998 88777543
No 127
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.85 E-value=6.7e-06 Score=76.35 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=42.2
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.+++|. .++++++ + .++.+++|+||||||||||++.|++.+++. ..+.+ ++.|.++
T Consensus 7 ~l~~l~~~------~vl~~i~--i----------~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~---~~G~I-~~~g~~i 64 (261)
T 2eyu_A 7 EFKKLGLP------DKVLELC--H----------RKMGLILVTGPTGSGKSTTIASMIDYINQT---KSYHI-ITIEDPI 64 (261)
T ss_dssp CGGGSSCC------THHHHGG--G----------CSSEEEEEECSTTCSHHHHHHHHHHHHHHH---CCCEE-EEEESSC
T ss_pred ChHHCCCH------HHHHHHh--h----------CCCCEEEEECCCCccHHHHHHHHHHhCCCC---CCCEE-EEcCCcc
Confidence 56666653 3788877 4 678999999999999999999999987631 03555 3455554
No 128
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.85 E-value=2.2e-06 Score=81.83 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=43.5
Q ss_pred cceeecccCCcCCcccccccccceeeecc-------------CCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTS-------------HTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
..|++.+|++.|. +.++.+++.... ..-+...+.++.+++|+||||||||||++.|++.+.+
T Consensus 42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 4588999999994 255555554100 0000012477899999999999999999999998864
No 129
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.85 E-value=1e-05 Score=83.85 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=40.0
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
.++++.|.... .++.+++ ++ .+|++++|+||||||||||++.|++.+.|
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i----------~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IV----------KDGMVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CC----------CTTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCeEEEECCCC-eeeCCCC-CC----------CCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 67788885321 2677777 65 88999999999999999999999998864
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.81 E-value=5.9e-06 Score=71.84 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhh-cCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATR-FFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~-~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++. ++ ..+|+.|.+
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g-~~~id~d~~ 45 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKL 45 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT-EEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC-CEEeeHHHH
Confidence 56789999999999999999999999 66 778888766
No 131
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.79 E-value=3.9e-06 Score=79.44 Aligned_cols=61 Identities=15% Similarity=0.023 Sum_probs=43.0
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCC---------CCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTP---------APAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+++.+|++.|. ++++.+++++..... +.....++.+++|+||||||||||++.|++.++
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577888888883 367777776410000 000125678999999999999999999999876
No 132
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.78 E-value=8.9e-06 Score=72.05 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|+||||||||||++.|++.++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999986
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.78 E-value=6.4e-06 Score=70.85 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~-~~~i~~d~~ 38 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG-FKKLSTGDI 38 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT-CEEECHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHH
Confidence 467899999999999999999999988 788888766
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.78 E-value=1.2e-05 Score=76.32 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.+|.+++|+|||||||||++..|++.+.+. .+++ .+.|.|+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~----~g~V-~l~g~d~~ 139 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE----GTKV-LMAAGDTF 139 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHT----TCCE-EEECCCCS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc----CCeE-EEEeeccc
Confidence 678999999999999999999999998633 5777 36666653
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.76 E-value=8.9e-06 Score=73.85 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~ 101 (343)
++.+++|+||+|||||||++.|++.++ ...++.|++ ++.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg-~~~~~~G~i-~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG-LQHLSSGHF-LRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC-CCCEEHHHH-HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHH-HHHHHh
Confidence 368999999999999999999998887 556667776 244443
No 136
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.72 E-value=1.8e-05 Score=80.94 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|++++|+||||||||||++.|++.+.|. .|++
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i 325 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITAD----EGSV 325 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS----BCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence 789999999999999999999999998854 5666
No 137
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.71 E-value=2.2e-05 Score=81.40 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=44.4
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+++.++++.|.. -.+..+++++ .+|++++|+||||||||||++.|++.+.|. .|++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v----------~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~----~G~I 413 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEI----------RKGEVIGIVGPNGIGKTTFVKMLAGVEEPT----EGKV 413 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEE----------ETTCEEEEECCTTSSHHHHHHHHHTSSCCS----BSCC
T ss_pred eEEEEeceEEEecc---eEEEeccccc----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE
Confidence 35667777776642 1355566665 789999999999999999999999998754 4665
No 138
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.70 E-value=2e-05 Score=80.40 Aligned_cols=57 Identities=21% Similarity=0.083 Sum_probs=43.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+++.++++.|.. ..+..+++++ .+|++++|+||||||||||++.|++.++|. .|++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i----------~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~----~G~i 343 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEI----------KKGEVIGIVGPNGIGKTTFVKMLAGVEEPT----EGKI 343 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEE----------ETTCEEEEECCTTSSHHHHHHHHHTSSCCS----BCCC
T ss_pred EEEEeeEEEEECC---EEEEeCcccc----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE
Confidence 4666677666532 1355555555 789999999999999999999999998754 5666
No 139
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.68 E-value=1.9e-05 Score=76.45 Aligned_cols=53 Identities=11% Similarity=-0.061 Sum_probs=44.1
Q ss_pred ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
-++..+++..|.++. .+++++ +++ .+|++++|+||||||||||++.|++...+
T Consensus 45 ~i~~~~l~~~~~tg~-~ald~l-l~i----------~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 45 PLLRQVIDQPFILGV-RAIDGL-LTC----------GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp STTCCCCCSEECCSC-HHHHHH-SCE----------ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CeeecccceecCCCC-EEEEee-eee----------cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 356667777776543 378888 887 89999999999999999999999999873
No 140
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.68 E-value=1.3e-05 Score=70.21 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=30.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+|++||||||+++.|++ ++ ..+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g-~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG-AYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT-CEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC-CEEEEccHH
Confidence 4799999999999999999999 77 888888877
No 141
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.68 E-value=3.3e-05 Score=73.33 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.++.+++|+|||||||||++..|++.+.+. .+++ .+.|.|+.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~----~g~V-~l~g~D~~ 141 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL----GKKV-MFCAGDTF 141 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTT----TCCE-EEECCCCS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc----CCEE-EEEeecCC
Confidence 368899999999999999999999998753 6777 46677764
No 142
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.67 E-value=1.3e-05 Score=70.29 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=29.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+||+||||||+++.|++ ++ ..+|+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-VPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-CCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-CcccchHHH
Confidence 4799999999999999999998 66 788888877
No 143
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.66 E-value=1.6e-05 Score=69.11 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++. + ..+|+.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g-~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-G-YPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-T-CCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-C-CEEEcccHH
Confidence 45679999999999999999999998 6 888988876
No 144
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.64 E-value=9.9e-05 Score=75.07 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~ 94 (343)
..+.+|+++|.+||||||+++.|++.++ ...++|.|.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3457899999999999999999999874 1334555543
No 145
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.63 E-value=2.5e-05 Score=75.98 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
+.++.+++|+|||||||||++..|++.+.+. .+++ .+.|.|+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~----~G~V-~l~g~D~ 195 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE----GTKV-LMAAGDT 195 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHT----TCCE-EEECCCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcccc----CCEE-EEecccc
Confidence 3678999999999999999999999998632 5777 3666665
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.63 E-value=0.00018 Score=60.90 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+++.++|+||+|||||||++.+++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999875
No 147
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.62 E-value=2.9e-05 Score=80.50 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=43.5
Q ss_pred cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
.++.|.|+... ..+.++++++ .+.++.+|++++|+||||||||||++.|++.+.|.
T Consensus 350 ~~~~~~y~~~~-~~l~~vsl~v-----~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 350 ASRAFSYPSLK-KTQGDFVLNV-----EEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp SSSCCEECCEE-EECSSCEEEE-----CCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred cceeEEecCcc-cccCceEEEE-----ecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 56778887543 3678899987 12234556899999999999999999999998753
No 148
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.61 E-value=2.4e-05 Score=68.45 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+.+|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CcEEehhHH
Confidence 3456899999999999999999999998 788887765
No 149
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.61 E-value=2.9e-05 Score=78.69 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
.+|.+++|+||||||||||++.|++.+.+. .+++. +.+.|+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~----~G~V~-l~g~D~ 331 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ----GKSVM-LAAGDT 331 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEE-EECCCT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc----CCeEE-EecCcc
Confidence 778999999999999999999999988632 56663 444444
No 150
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.60 E-value=2.2e-05 Score=67.31 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~ 40 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG-WVHLSAGDL 40 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CeEeeHHHH
Confidence 46899999999999999999999998 888888765
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.60 E-value=2e-05 Score=70.53 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE-LKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS-SEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC-CeEEechHH
Confidence 3467999999999999999999999998 788888776
No 152
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.60 E-value=2.8e-05 Score=84.54 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=42.8
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~ 81 (343)
..+...++++.|.. ..+++++++++ .+|++++|+||||||||||++.|++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I----------~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRL----------KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEeeEEEEECC--EEeEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35666688888853 34899999998 8999999999999999999999994
No 153
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.59 E-value=2.3e-05 Score=69.66 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH-AAHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEehhHH
Confidence 3567999999999999999999999998 888888776
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.58 E-value=2.9e-05 Score=69.41 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHH
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la 80 (343)
+++|++++|+||||||||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999999999998
No 155
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.56 E-value=3e-05 Score=76.91 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
.++.+++|+|||||||||+++.|++.+++. .+.+ ++.|-++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~----~g~I-~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS----ERNI-LTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT----TSCE-EEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC----CCEE-EEecccc
Confidence 467899999999999999999999998743 4556 3445444
No 156
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.56 E-value=4.2e-05 Score=79.35 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
.+|++++|+||||||||||++.|++.+.|.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 789999999999999999999999998753
No 157
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.56 E-value=2.4e-05 Score=69.37 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=32.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+|+|+|++||||||+++.|++.++ ..+|++|.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg-~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG-AHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CEEEECcHH
Confidence 46899999999999999999999988 899999988
No 158
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.55 E-value=2.9e-05 Score=68.51 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.++++++|+||||||||||++.|+....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999998543
No 159
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.55 E-value=0.00018 Score=75.94 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccc-ccccCCCcccChhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL-GEFVPDDVEFTPDDF 135 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li-~~~~~~~~~~s~~~f 135 (343)
..+++++|+||+ |+||...|...++ +.+ ..-...+|.+|...|..|+.|||+ +.-.+.. .+....|
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~-------~~~--~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~-~i~~~~f 595 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFP-------DKF--GSCVPHTTRPKREYEIDGRDYHFVSSREKMEK-DIRAHKF 595 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCc-------cce--eecccccccCCCCCccCCceeEEecCHHHHHH-HHhcCCc
Confidence 356899999994 9999999988765 222 234567899999999999999998 6555544 4445555
Q ss_pred hhh----------hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHH
Q 019312 136 RLQ----------ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQ 205 (343)
Q Consensus 136 ~~~----------a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re 205 (343)
.+. ..+.|+++.++|+.+||-. ..-.++.|-. ...|.+.+|...++.+
T Consensus 596 lE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi-~~~~~~~l~~---------------------~~~~p~~ifi~pps~~ 653 (721)
T 2xkx_A 596 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDV-SANAVRRLQA---------------------AHLHPIAIFIRPRSLE 653 (721)
T ss_pred eEEEEECCccceeeHHHHHHHHHCCCcEEEeC-CHHHHHHHHh---------------------cccCCEEEEEeCCcHH
Confidence 543 3567889999999888764 2222222211 0123445555567789
Q ss_pred HHHHHHHHHH
Q 019312 206 LLYDYLNKRV 215 (343)
Q Consensus 206 ~L~~RI~~Rv 215 (343)
+|.+ |..|.
T Consensus 654 ~L~~-l~~R~ 662 (721)
T 2xkx_A 654 NVLE-INKRI 662 (721)
T ss_pred HHHH-HhccC
Confidence 9988 76665
No 160
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.54 E-value=2.4e-05 Score=69.67 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+.+|+|+||+||||||+++.|++.++ ...++.|.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHH
Confidence 457899999999999999999999998 777777765
No 161
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.54 E-value=3e-05 Score=68.76 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=30.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|+|++||||||+++.|++ ++ ..+|+.|.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg-~~~id~D~~ 37 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG-INVIDADII 37 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC-CEEEEccHH
Confidence 56899999999999999999998 77 788888876
No 162
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.54 E-value=2.6e-05 Score=77.56 Aligned_cols=50 Identities=16% Similarity=-0.006 Sum_probs=36.8
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCE--EEEEcCCcccHHHHHHHHHhhc
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKL--VVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~I~GpTGsGKStla~~la~~~ 83 (343)
..+++.+ ++.|... + +.++++++ .+|.+ ++|+||||||||||++.|++..
T Consensus 15 ~~l~~~~-~~~y~~~-~--L~~vsl~i----------~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 15 RTVPLAG-HVGFDSL-P--DQLVNKSV----------SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --CCCCC-CC-CC---C--HHHHHHSC----------C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEEEee-EEEECCe-e--cCCCceEe----------cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444444 5666532 3 89999997 88999 9999999999999999999874
No 163
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.53 E-value=4.1e-05 Score=73.50 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.+|.+++|+|||||||||++..|++.+.+. .+++ .+.|.|+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~----~g~V-~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH----GFSV-VIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCE-EEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCEE-EEEeeccc
Confidence 568999999999999999999999988643 5677 46666654
No 164
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.53 E-value=3.1e-05 Score=67.49 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=31.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-VPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-CceeccchH
Confidence 899999999999999999999998 889999987
No 165
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.53 E-value=8.6e-06 Score=81.77 Aligned_cols=45 Identities=29% Similarity=0.343 Sum_probs=36.5
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+++.++++.|. ++++++ .+|++++|+||||||||||++.|++...
T Consensus 119 i~~~nl~~~y~--------~vsl~i----------~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 119 KYIYNLHFMLE--------KIRMSN----------FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHS----------SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred hhhhhhhehhh--------cCceEe----------CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 55556666553 566665 7899999999999999999999999875
No 166
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.50 E-value=3.8e-05 Score=69.31 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg-~~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG-FTYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-CceecCCCe
Confidence 5678999999999999999999999998 888999988
No 167
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.49 E-value=5.1e-05 Score=70.56 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=33.3
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.|++++..+ .+|.+++|+||||||||||++.++....
T Consensus 24 ~Ld~i~~~l----------~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 24 GINDKTLGA----------RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp THHHHHCSB----------CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCC----------CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 678888776 8899999999999999999999999875
No 168
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.48 E-value=3.5e-05 Score=67.97 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=29.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEeeHHHH
Confidence 578999999999999999999998 888888776
No 169
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.48 E-value=3.8e-05 Score=69.99 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.++.+|+|+||+||||||+++.|++.++ ..+||.|.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHH
Confidence 3567899999999999999999999998 888888776
No 170
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.48 E-value=5.7e-05 Score=77.16 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
.+|++++|+||||||||||++.|++.+.|
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 67999999999999999999999998865
No 171
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.47 E-value=3.8e-05 Score=80.13 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=28.7
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHH
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLS 76 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla 76 (343)
..+|+++++++ ++|++++|+||||||||||+
T Consensus 31 ~~~L~~vsl~i----------~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEI----------PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEE----------ETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEE----------CCCCEEEEECCCCCCHHHHh
Confidence 34799999998 89999999999999999997
No 172
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.47 E-value=3.8e-05 Score=67.89 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=29.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG-IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHH
Confidence 478999999999999999999998 888888776
No 173
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.46 E-value=4.3e-05 Score=68.58 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|++++|+||||||||||++.|++. .|. .|++
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~----~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ----SKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHH----TTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCc----CCee
Confidence 46899999999999999999999998 642 4555
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.45 E-value=2.9e-05 Score=75.40 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|+||||||||||++.|++.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4566999999999999999999999886
No 175
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.45 E-value=6.5e-05 Score=68.83 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
-.++|+||.||||||++..|++.++ ..+||.|.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g-~~~is~gdl 42 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG-IPQISTGDM 42 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT-CCEECHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC-CCeeechHH
Confidence 4789999999999999999999998 889998877
No 176
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.45 E-value=6.1e-05 Score=65.80 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=22.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++|+||||||||||++.|++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999985
No 177
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=6.7e-05 Score=66.07 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|+|++||||||+++.|++.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999874
No 178
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.44 E-value=0.00034 Score=72.80 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
++.+|+|+|++||||||+++.|++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999988
No 179
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.43 E-value=0.00039 Score=68.27 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
..+++|+|+||+| +||.+.|...++ . .. . .+|..|++.|..|+.|||+
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p-~------~~---~---~~tr~pR~gE~dG~~Y~Fv---------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEP-D------IY---Q---IAKSEPRDAGTDQRSSGII---------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCT-T------TE---E---ECCCCCCCSSSCCC--CCC----------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCc-c------cc---c---cccCCCCCcccCCccCCcC----------------
Confidence 4678999999998 899999988876 2 12 1 1466788889999999876
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
....|.++.++|+.+||- +|+... +.+.....+.+.+|.++++.++|.+| .+|
T Consensus 278 --~~~~V~~~~~~Gk~~iLd--------------Id~qg~--------~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 278 --RLHTIKQIIDQDKHALLD--------------VTPNAV--------DRLNYAQWYPIVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp --CHHHHHHHHTTTCEEEEC--------------CCHHHH--------HHHHHTTCCCEEEEEECCCHHHHHHH-HHH
T ss_pred --cHHHHHHHHHcCCEEEEE--------------eCHHHH--------HHHHhCCCCCEEEEEeCcCHHHHHHH-Hhc
Confidence 356788899999988773 233221 01111112346677788899999987 445
No 180
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.42 E-value=5.3e-05 Score=72.77 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=46.8
Q ss_pred eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
++.++++.|. ...+++++++++ .++.+++|+||+|||||||+..|++.+.+. .+++. +.+.++
T Consensus 31 e~~~~~~~~~--~~~~l~~i~~~~----------~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~----~g~v~-i~~~d~ 93 (337)
T 2qm8_A 31 ESRRADHRAA--VRDLIDAVLPQT----------GRAIRVGITGVPGVGKSTTIDALGSLLTAA----GHKVA-VLAVDP 93 (337)
T ss_dssp TCSSHHHHHH--HHHHHHHHGGGC----------CCSEEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEE-EEEECG
T ss_pred eeCCcccccC--hHHHHHhCCccc----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhC----CCEEE-EEEEcC
Confidence 3444444442 123678888876 789999999999999999999999987532 46663 556666
Q ss_pred cC
Q 019312 103 TT 104 (343)
Q Consensus 103 ~T 104 (343)
.+
T Consensus 94 ~~ 95 (337)
T 2qm8_A 94 SS 95 (337)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.42 E-value=6.2e-05 Score=73.70 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=35.9
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN 90 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs 90 (343)
.+++++++.+ +++.+++|+||+|||||||++.|++.+. +.+++
T Consensus 157 ~~l~~~~~~i----------~~~~~i~l~G~~GsGKSTl~~~l~~~~~-g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNI----------PKKRYWLFKGPIDSGKTTLAAALLELCG-GKALN 199 (377)
T ss_dssp HHHHHHHHCC----------TTCCEEEEECSTTSSHHHHHHHHHHHHC-CEEEC
T ss_pred HHHHhccccc----------CCCCEEEEECCCCCCHHHHHHHHHhhcC-CcEEE
Confidence 3667777776 7889999999999999999999999887 55443
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.41 E-value=5.8e-05 Score=64.85 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++..++|+||+|||||||++.+++.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999998873
No 183
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.40 E-value=6.7e-05 Score=72.34 Aligned_cols=30 Identities=37% Similarity=0.472 Sum_probs=27.3
Q ss_pred CCC--CCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 56 SKK--DKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 56 ~~~--~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
+.+ ++.++|+||||||||||++.|++.+++
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 366 899999999999999999999999874
No 184
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.40 E-value=9.8e-05 Score=76.99 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=30.0
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHH
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDL 79 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~l 79 (343)
.+|+++++++ .+|++++|+||||||||||++.+
T Consensus 336 ~~L~~vsl~I----------~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 336 HNLKNVSVKI----------PLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTCCSEEEEE----------ETTSEEEEECSTTSSHHHHHTTT
T ss_pred cccccceeEe----------cCCCEEEEEeeCCCCHHHHHHHH
Confidence 4789999998 89999999999999999999654
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.39 E-value=5e-05 Score=67.61 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
++..|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~l 39 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG-LAHLSTGDM 39 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-ceEEehhHH
Confidence 356899999999999999999999998 888888776
No 186
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.38 E-value=2.7e-05 Score=73.35 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC----CceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP----SEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~----~eIIs~Ds~ 94 (343)
.++.+|+|.||+||||||+++.|+..++. ..+|+.|.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 34679999999999999999999997651 478899988
No 187
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.36 E-value=3.7e-05 Score=76.16 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=38.6
Q ss_pred cccccceeeeccCCCCCCCCCCCC--------------------EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDK--------------------LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV 96 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv 96 (343)
.+++++++++ .+|. +++|+||||||||||++.|++..++. .+++.
T Consensus 37 ~~l~~is~~i----------~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~----~GsI~- 101 (413)
T 1tq4_A 37 EILNLIELRM----------RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE----EGAAK- 101 (413)
T ss_dssp HHHHHHHHHH----------HHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS----TTSCC-
T ss_pred HHhhhcccee----------cCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc----CceEE-
Confidence 3788899987 6777 99999999999999999999987743 45552
Q ss_pred Eeccc
Q 019312 97 YKGLD 101 (343)
Q Consensus 97 y~gl~ 101 (343)
+.|.+
T Consensus 102 ~~g~~ 106 (413)
T 1tq4_A 102 TGVVE 106 (413)
T ss_dssp CCC--
T ss_pred ECCee
Confidence 34443
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.35 E-value=3.5e-05 Score=67.07 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=30.9
Q ss_pred eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+++.+++|.|.. ..+.+ +.. .++..++|+|++|||||||++.|++..
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~----------~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPS----------DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -------CEEEE---SSGGG--SSC----------SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhhheeec---CCHhH--CCC----------CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567788888852 35555 443 668899999999999999999988765
No 189
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.35 E-value=5.2e-05 Score=70.59 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=31.8
Q ss_pred ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 34 RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+..+++++++. ++| ++|+||+|||||||++.|++.++
T Consensus 31 ~~~~~l~~~~l~~----------~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 31 RNPDQFKALGLVT----------PAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HSHHHHHHTTCCC----------CSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred hCHHHHHHcCCCC----------CCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 3455677777774 445 99999999999999999999987
No 190
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.35 E-value=6.3e-05 Score=67.41 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+||.||||+|++..|++.++ ...||.|.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-FVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CeEEcHHHH
Confidence 588999999999999999999999 889998887
No 191
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.34 E-value=8e-05 Score=67.00 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
..+..|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~l 50 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDM 50 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHH
Confidence 3457899999999999999999999998 888887765
No 192
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=9.3e-05 Score=65.39 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
|++++|+||||||||||++.|++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46899999999999999999999874
No 193
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.33 E-value=9.3e-05 Score=68.95 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=23.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI 102 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I 102 (343)
.++|+||||||||||++.|++...+. .+++. +.|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~----~G~i~-~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR----KASSW-NREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC----CCccc-cCCccc
Confidence 58899999999999999999988743 56663 566665
No 194
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.32 E-value=7.5e-05 Score=75.68 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=33.1
Q ss_pred cccccee-eeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH--HHhhcC
Q 019312 38 RWRKTVM-ASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID--LATRFF 84 (343)
Q Consensus 38 ~~~~~~~-~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~--la~~~~ 84 (343)
.|+++++ .+ ++|++++|+||||||||||++. +++..+
T Consensus 27 ~Ld~i~~G~i----------~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGL----------PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSE----------ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCC----------CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 7899998 87 8899999999999999999999 567665
No 195
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.32 E-value=0.00043 Score=63.37 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|.|+.||||||++..|++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999886
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.31 E-value=0.00011 Score=70.40 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+.+++|+||||||||||++.|++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456999999999999999999999875
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.31 E-value=7.3e-05 Score=65.38 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS 91 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~ 91 (343)
.++.+|+|+|+.||||||+++.|++.++ ...++.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~~~~ 41 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK-NNNVEV 41 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcE
Confidence 4578999999999999999999999876 444444
No 198
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.30 E-value=0.00012 Score=72.18 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=44.2
Q ss_pred ccceeecccCCcCCcccccccc--------------cceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 19 QQHYSSFYSPFLHPKRRRSRWR--------------KTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
...+.|.+++|.||..+. .+. ++.+.+ .+|+.++|+||+|+|||||+..|++..
T Consensus 131 ~~ri~Fe~ltp~yP~er~-~Le~~~~~~~~tGiraID~~~pi----------~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPI----------GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBC-CCCCTTCCTTHHHHHHHHHHSCC----------BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCcc-ccccCCCCcccccceeeeeeeee----------cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 367889999999998765 444 334443 889999999999999999999999875
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.29 E-value=0.00012 Score=62.83 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhc---CCCceecCC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRF---FPSEIINSD 92 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~---~~~eIIs~D 92 (343)
+|+|+|+.||||||+++.|++.+ + ..+|+.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g-~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG-YFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEe
Confidence 68999999999999999999987 4 5555543
No 200
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.29 E-value=0.00017 Score=61.74 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++ +.+|+||||||||||+.+|...+.
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 344 999999999999999999998876
No 201
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.27 E-value=0.00013 Score=64.14 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.8
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|.+++|+||||||||||++.++....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999997653
No 202
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.26 E-value=7.7e-05 Score=65.83 Aligned_cols=91 Identities=22% Similarity=0.382 Sum_probs=49.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccc-ccccCccccccccCCCcccChhhhhhhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHK-RHNVPHHLLGEFVPDDVEFTPDDFRLQA 139 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e-~~~i~h~li~~~~~~~~~~s~~~f~~~a 139 (343)
++.|+|++|||||++|..|+.. + .+ + +| |.|+.+..+| +..|.+|.... +.. -.+..... +.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~------~-~y----iaT~~~~d~e~~~rI~~h~~~R--~~~-w~tiE~p~-~l 63 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQ------V-LY----IATSQILDDEMAARIQHHKDGR--PAH-WRTAECWR-HL 63 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SS------E-EE----EECCCC------CHHHHHHHTS--CTT-EEEECCSS-CG
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CC------e-EE----EecCCCCCHHHHHHHHHHHhcC--CCC-cEEEEcHh-hH
Confidence 3789999999999999999976 4 22 2 35 4455443333 34465554331 111 01111111 12
Q ss_pred hHHHHHHHhcCCeeEEEcCchhhHHHHHhh
Q 019312 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQ 169 (343)
Q Consensus 140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~ 169 (343)
.+.+.+..+.+ -+||+.+-++|+..+++.
T Consensus 64 ~~~l~~~~~~~-~~VLvDclt~wl~n~l~~ 92 (180)
T 1c9k_A 64 DTLITADLAPD-DAILLECITTMVTNLLFA 92 (180)
T ss_dssp GGTSCTTSCTT-CEEEEECHHHHHHHHHHH
T ss_pred HHHHHhhcccC-CeEEEcCHHHHHHHHHhh
Confidence 22222222222 389999999999888853
No 203
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.26 E-value=8.6e-05 Score=65.72 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=29.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-IPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHH
Confidence 478999999999999999999998 888888776
No 204
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.26 E-value=0.00017 Score=62.25 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=23.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+|+|+|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999987
No 205
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.25 E-value=9.6e-05 Score=66.20 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=29.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-LAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CeEEchHHH
Confidence 689999999999999999999998 788888766
No 206
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.25 E-value=0.00046 Score=62.12 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+|.+|+|.|+.||||||++..|++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
No 207
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.24 E-value=8e-05 Score=75.64 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPS 86 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~ 86 (343)
..+..++|+|||||||||+++.|++.+++.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 678899999999999999999999998753
No 208
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00018 Score=62.46 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.+|+|+|+.||||||+++.|++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999999999883
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=0.00018 Score=67.81 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE---ecccccC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY---KGLDITT 104 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy---~gl~I~T 104 (343)
..+++++|+||||||||||++.|++...+. .+.+. + +|.++++
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~----~G~i~-~~~~~g~~~t~ 212 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLR----VSEVS-EKLQRGRHTTT 212 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------------------CCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccccc----cccee-cccCCCCCcee
Confidence 358899999999999999999999988743 56663 4 6666654
No 210
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.23 E-value=0.00011 Score=65.99 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.+|.+|+|.|++||||||+++.|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999999999987
No 211
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.23 E-value=0.0001 Score=65.09 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
+.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g-~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS-MIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CceecCChH
Confidence 46899999999999999999999998 888888887
No 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.00018 Score=62.58 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.+|+|.|+.||||||+++.|++.++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999999987
No 213
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.19 E-value=0.00014 Score=65.89 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEcCCcccHHHHHHHHHhhcC
Q 019312 62 VVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~ 84 (343)
++|+||+|||||||++.+++.++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 214
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.18 E-value=0.00026 Score=66.77 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE---ecccccC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY---KGLDITT 104 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy---~gl~I~T 104 (343)
..+++++|+||||||||||++.|+ ...+. .+.+. + +|.++++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~----~G~i~-~~~~~G~~~t~ 207 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR----TQEVS-EKTERGRHTTT 207 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC----CSCC----------CCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc----ccccc-cccCCCCCcee
Confidence 468899999999999999999999 77643 67774 4 6666654
No 215
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.18 E-value=4.6e-05 Score=78.90 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=35.3
Q ss_pred cceeecccCCcCCcccccccccceee-eccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMA-STSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
.++++.++++.|.......+..++.- .-+.. .. -.-+.++|+||||||||||++.|++.+.|. +.|.+. +.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~---~~-l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~---~sG~vt-~~ 80 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVE---QD-LALPAIAVIGDQSSGKSSVLEALSGVALPR---GSGIVT-RC 80 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCC---SS-CCCCCEECCCCTTSCHHHHHHHHHSCC----------CC-CS
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCC---Cc-ccCCeEEEECCCCChHHHHHHHHhCCCCCC---CCCeEE-Ec
Confidence 35778889999976554444433210 00000 00 112359999999999999999999987541 156663 66
Q ss_pred cccc
Q 019312 99 GLDI 102 (343)
Q Consensus 99 gl~I 102 (343)
|.++
T Consensus 81 g~~i 84 (608)
T 3szr_A 81 PLVL 84 (608)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7775
No 216
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.18 E-value=0.00017 Score=70.13 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.++.+++|+|||||||||+++.|++.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 36788999999999999999999999876
No 217
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.15 E-value=0.00021 Score=67.29 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCC------Ccee-cCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFP------SEII-NSDKM 94 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~------~eII-s~Ds~ 94 (343)
.++.+|+|+||+|||||||++.|++.+++ ..++ +.|+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45789999999999999999999998862 2233 77777
No 218
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00017 Score=62.76 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=23.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++++|+|+||||||||+..|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999999986
No 219
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.13 E-value=0.00019 Score=73.50 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=27.3
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
+.++.+++|+|+||||||||++.|++.+++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 457899999999999999999999999873
No 220
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.13 E-value=0.00015 Score=70.42 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=31.1
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++++++++ .+| +++|+||||||||||+.+|+..++
T Consensus 50 ~l~~v~l~~----------~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELEL----------GGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEEC----------CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEec----------CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 456777775 778 999999999999999999988776
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.11 E-value=0.00029 Score=61.62 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~ 81 (343)
+.++.+++|+||+|||||||+..++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999999998
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.11 E-value=0.00025 Score=62.60 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+|++||||||+++.|++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5688999999999999999999999875
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.10 E-value=0.00019 Score=66.08 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEcCCcccHHHHHHHHHhhcC
Q 019312 62 VVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~ 84 (343)
++|+||+|||||||++.|++.++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999999886
No 224
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.10 E-value=0.001 Score=66.82 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
..+++|+|+||+|+| |.+.|...++ . .. . . .+|. |.+.|..|+.|||
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p-~------~f---~-s-~~TR-pR~gE~dG~~Y~F----------------- 268 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEP-D------IY---Q-I-AKSE-PRDAGTDQRSSGI----------------- 268 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCT-T------TE---E-E-CCCB-C----------CB-----------------
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCC-C------ce---e-e-ecCC-CCCcccccccCCc-----------------
Confidence 567899999999999 8888887765 2 22 1 1 2355 8888999998876
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY 210 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R 210 (343)
.....|.++.++|+.+||- +|++.. +.+.....+.+.+|.++++.++|.++
T Consensus 269 -Ts~~~V~~vl~~Gk~~iLd--------------Id~qg~--------~~l~~~~~~p~~IFI~PPS~e~L~~~ 319 (468)
T 3shw_A 269 -IRLHTIKQIIDQDKHALLD--------------VTPNAV--------DRLNYAQWYPIVVFLNPDSKQGVKTM 319 (468)
T ss_dssp -CCHHHHHHHHTTTCEEEEC--------------CCHHHH--------HHHHHTTCCCEEEEEECSCHHHHHHH
T ss_pred -ccHHHHHHHHHCCCeEEEE--------------eCHHHH--------HHHHhcCCCCEEEEEeCcCHHHHHHH
Confidence 2456788889999988773 233220 01111112346677788899999874
No 225
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.08 E-value=0.00029 Score=61.55 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+|+.||||||+++.|++.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999875
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.04 E-value=0.00029 Score=62.60 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
++++.+++|+||+|||||||+..++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 578999999999999999999999984
No 227
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.03 E-value=0.0008 Score=60.66 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.-.|+|+|..||||||++..|++ ++ .++|++|.+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g-~~vidaD~i 42 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RG-ASLVDTDLI 42 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CC-CcEEECcHH
Confidence 45799999999999999999998 77 899999987
No 228
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.03 E-value=7.1e-05 Score=68.29 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=27.5
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~ 103 (343)
.+++|+||||||||||+.+|+..+.|. .+.+ .+.|.++.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~----~G~i-~~~g~~~~ 66 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPD----LTLL-HFRNTTEA 66 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCC----TTTC---------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccC----CCeE-EECCEEcc
Confidence 688999999999999999999998854 6777 47777763
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00019 Score=68.30 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE---ecccccC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY---KGLDITT 104 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy---~gl~I~T 104 (343)
+.++++++|+||||||||||++.|++...+. .+.+. + +|..+++
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~----~G~I~-~~~~~G~~tt~ 216 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR----TNEIS-EHLGRGKHTTR 216 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC------------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc----cccee-eecCCCccccc
Confidence 4578999999999999999999999877632 45553 3 5655544
No 230
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.99 E-value=0.00043 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=22.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhc
Q 019312 61 LVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~ 83 (343)
+|+|.|+.||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999998
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.98 E-value=0.0014 Score=57.46 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+..++|.||+|+|||+|++.+++.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 232
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.98 E-value=0.00024 Score=62.10 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=23.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+|+|+|++||||||++..|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999886
No 233
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.87 E-value=0.0034 Score=64.52 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|+|++||||||+++.|++.++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999875
No 234
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.86 E-value=0.00069 Score=74.16 Aligned_cols=58 Identities=12% Similarity=-0.038 Sum_probs=35.6
Q ss_pred ceeecc-----cCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 21 HYSSFY-----SPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+.+.+ +.+.|+.. ..++.+++++.... ......+.+++|+|||||||||+++.+ +.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~---~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGD-DFIPNDILIGCEEE---EQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CEEEEEECCCC------CC-CCCCEEEEESCCCS---CC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred eEEEEeccccEEEEEecCC-ceEeeeeeeccccc---cccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 467777 77766433 34788999886100 000123799999999999999999999 543
No 235
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.85 E-value=0.00046 Score=63.63 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.++.+++|+||+|||||||+..++....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999999998654
No 236
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.83 E-value=0.00056 Score=74.03 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=31.9
Q ss_pred ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..++.+++++. .++++++|+|||||||||+++.++..
T Consensus 660 ~~V~ndvsl~~----------~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDLSE----------DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEECT----------TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccccC----------CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34778888886 77899999999999999999998753
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.81 E-value=0.00061 Score=64.24 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|+|||||||||++..||..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998875
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.81 E-value=0.00065 Score=64.49 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++++++|+||+||||||++..||..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 5678999999999999999999999885
No 239
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.80 E-value=0.0006 Score=73.89 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=35.8
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHH
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDL 79 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~l 79 (343)
..+++.+++. ..|+++++++ +.|.+++|+|+||||||||++.+
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I----------~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKI----------PLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEE----------ESSSEEECCBCTTSSHHHHHTTT
T ss_pred eEEEEecCcc-------cccccceEEE----------cCCCEEEEEcCCCCCHHHHHHHH
Confidence 4566666653 2589999998 89999999999999999999875
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.78 E-value=0.00062 Score=64.95 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++++++|+||+|+||||++..||..+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6688999999999999999999999875
No 241
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.00089 Score=60.60 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.-++|+||+|+|||+|++.+++.++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999887
No 242
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.78 E-value=0.00029 Score=75.60 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=38.9
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH-HHhhc
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID-LATRF 83 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~-la~~~ 83 (343)
..+++.++++. .|+++++++ ++|.+++|+|+||||||||++. |++.+
T Consensus 501 ~~L~v~~l~~~-------~L~~vsl~i----------~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTRN-------NLDNLDVRF----------PLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEET-------TEEEEEEEE----------ESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeeec-------ccccceEEE----------cCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 45777777652 589999998 8999999999999999999996 66543
No 243
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.77 E-value=0.00091 Score=71.42 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=30.2
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++.+++++ .++++++|+|||||||||+++.++...
T Consensus 596 ~vlndisl~-----------~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 596 FIANPLNLS-----------PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCEEEEEC-----------SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeeccccc-----------CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 366777776 457899999999999999999999863
No 244
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.76 E-value=0.00091 Score=72.68 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=36.1
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHH
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDL 79 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~l 79 (343)
..+++.+++. ..|+++++++ +.|.+++|+|+||||||||++.+
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I----------~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSF----------PLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEE----------ESSSEEEEECSTTSSHHHHHTTT
T ss_pred ceEEEecCcc-------ccccCceEEE----------CCCCEEEEEcCCCCCHHHHHHHH
Confidence 3566777653 2589999998 89999999999999999999884
No 245
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.76 E-value=0.00098 Score=62.35 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
..+..+.|.||+|+|||+|++.++..++ ..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i 78 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFI 78 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC-CCEE
Confidence 4567899999999999999999999987 5443
No 246
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.75 E-value=0.00077 Score=66.75 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=33.5
Q ss_pred cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+.+.++++.|.. ..++++++++ |+|+|+||||||||++.|++...
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~----------------I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFT----------------LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEE----------------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECC--EEEecCCCEE----------------EEEECCCCCcHHHHHHHHhCCCC
Confidence 34788889988853 3467777776 38999999999999999998754
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.75 E-value=0.00084 Score=65.23 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++++++|+||||||||||++.|++...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 578999999999999999999998765
No 248
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.74 E-value=0.0011 Score=70.40 Aligned_cols=49 Identities=27% Similarity=0.186 Sum_probs=36.0
Q ss_pred cceeecccCCcCCc---ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 20 QHYSSFYSPFLHPK---RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 20 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..+.+.++ +||. ....++.+++++ +++++|+|||||||||+++.++...
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~-------------g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA-------------HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES-------------SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC-------------CcEEEEECCCCCChHHHHHHHHhhh
Confidence 44555554 5664 223466666665 6899999999999999999999864
No 249
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.72 E-value=0.00074 Score=64.17 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=33.1
Q ss_pred ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 34 RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++..++..+++.+.... ..-.....++|+||+|+|||||++.+++.++
T Consensus 29 g~~~~~~~l~~~i~~~~---~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 29 GQENVKKKLSLALEAAK---MRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SCHHHHHHHHHHHHHHH---HHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHH---hcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34456677776652110 0001236899999999999999999999986
No 250
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.69 E-value=0.0007 Score=64.16 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++++|+|++|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4699999999999999999999875
No 251
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.68 E-value=0.00059 Score=62.38 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|.|+.||||||+++.|++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999999985
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.0008 Score=59.74 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+.+|.+++|+||+|||||||+..++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998887654
No 253
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.66 E-value=0.00061 Score=60.01 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG 99 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g 99 (343)
-.+.-++|.|++|+||||++..|.+. + ..+|+.|.+.+.+.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G-~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-G-HQLVCDDVIDLKQE 54 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-T-CEEEESSEEEEEES
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-C-CeEecCCEEEEEEe
Confidence 45788999999999999999999885 4 78899898876654
No 254
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.63 E-value=0.00097 Score=72.30 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.8
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la 80 (343)
-++.+++++. .++++++|+|||||||||+++.++
T Consensus 650 ~v~ndisl~~----------~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 650 FIPNDVYFEK----------DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCEEEEEET----------TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eecccceeec----------CCCeEEEEECCCCCCHHHHHHHHH
Confidence 4677888885 678999999999999999999984
No 255
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.59 E-value=0.0015 Score=61.09 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=26.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
+.+..+.|.||+|+|||+|++.+|+.++ ..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~ 64 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG-INP 64 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT-CCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCE
Confidence 4467888889999999999999999987 443
No 256
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.55 E-value=0.0014 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..++|.||+|+|||++++.+++.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999874
No 257
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.54 E-value=0.0013 Score=57.18 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..++++|+|++|||||||+..|++.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 357999999999999999999998764
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.53 E-value=0.00098 Score=64.16 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=26.6
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+++|.++.|+||+|||||||+..++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999999999886
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.53 E-value=0.0015 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++++|+|++|||||||+..|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 47999999999999999999998764
No 260
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.51 E-value=0.0015 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
...++|.||+|+|||++++.+++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999874
No 261
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.51 E-value=0.0013 Score=63.63 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..+ +++|+||||||||||..+|+-.+
T Consensus 22 ~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 445 88899999999999998887554
No 262
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.49 E-value=0.0014 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+.+.+|+||||||||||+.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999987655
No 263
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.49 E-value=0.0019 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++..+.|.||+|+|||++++.+++.++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999887
No 264
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.47 E-value=0.0021 Score=58.72 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE 87 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e 87 (343)
.+..+.|.||+|+|||+|++.++..++ ..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~-~~ 78 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN-AT 78 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT-CE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC-CC
Confidence 456799999999999999999999987 44
No 265
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.46 E-value=0.0022 Score=57.60 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+..+.|.||+|+|||++++.+++.++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999887
No 266
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.41 E-value=0.0016 Score=63.11 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.4
Q ss_pred cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+.++++.. .++ +++|+||||||||||+.+++..
T Consensus 17 ~~~~~~~~----------~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 17 LAPGTLNF----------PEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEEC----------CSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeEEEE----------cCC-eEEEECCCCCChhHHHHHHHHh
Confidence 45677775 556 9999999999999999999863
No 267
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.37 E-value=0.00075 Score=65.60 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=27.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHhccH---HHHHHHHHhc
Q 019312 196 CFLWVDSSLQLLYDYLNKRVDDMLESGM---FEELAEFFDS 233 (343)
Q Consensus 196 ~~i~L~~~re~L~~RI~~Rv~~Ml~~Gl---leEv~~l~~~ 233 (343)
.+++++++.++..+|+-+|- ++.|+ .+|+.+.+..
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~---~~~Gl~~s~eea~~r~~~ 328 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRH---LQSGLVTTIAEGREKFRS 328 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHH---HHTTSCSSHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhh---hccCCCCCHHHHHHHHHh
Confidence 46788999999999988886 45898 7888776653
No 268
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.37 E-value=0.0017 Score=56.02 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..++|+|++|||||||++.+++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999998654
No 269
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.36 E-value=0.0019 Score=65.33 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEcCCcccHHHHHHHHHhhcC
Q 019312 62 VVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~~ 84 (343)
++|+||+|+|||+|++.+++..+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999886
No 270
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.34 E-value=0.002 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=23.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..++|.||+|+|||+|++.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998774
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.30 E-value=0.002 Score=60.57 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++++++|+|++|+||||++..||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999875
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.29 E-value=0.0033 Score=56.71 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN 90 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs 90 (343)
++...++|.||.|+|||+++.+|++.+. +.+++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~-g~i~~ 88 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ-GAVIS 88 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT-CEECC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC-CCeee
Confidence 4456799999999999999999999987 65544
No 273
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.29 E-value=0.0022 Score=58.22 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=26.1
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
...++.+|+|.|+.||||||++..|++.+.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 336789999999999999999999999886
No 274
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.29 E-value=0.0019 Score=55.75 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..++|+|++|||||||++.+++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 275
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.27 E-value=0.0022 Score=57.56 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+|+|.|+.||||||++..|++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999886
No 276
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.25 E-value=0.0022 Score=61.36 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
.+..++|.||+|+|||++|+.+++.++ .+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~-~~~~ 80 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD-VPFT 80 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-CCEE
Confidence 456789999999999999999999987 5443
No 277
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.25 E-value=0.0023 Score=64.96 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+.+|+|+|.+||||||+++.|++.++
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999997
No 278
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.24 E-value=0.0026 Score=62.43 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+.+++|+||||||||||+.+++..+.
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4478999999999999999999998876
No 279
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0024 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999985
No 280
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.20 E-value=0.0031 Score=68.23 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=27.2
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHH
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLS 76 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla 76 (343)
.|+++++++ +.|.+++|+||||||||||+
T Consensus 599 ~Lk~Vsl~I----------~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEI----------PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEE----------ESSSEEEEECSTTSSHHHHH
T ss_pred cccccceEE----------cCCcEEEEEccCCCChhhhH
Confidence 588999998 88999999999999999997
No 281
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.20 E-value=0.0024 Score=64.97 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++..++|+||+|||||||++.+++.++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999999999987
No 282
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.20 E-value=0.0022 Score=58.31 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+|.+|+|.||.||||||++..|++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999986
No 283
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.001 Score=63.05 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=29.9
Q ss_pred cccccccceeeeccCCCCCCCCCCCCE--EEEEcCCcccHHHHHHHHHhhcC
Q 019312 35 RRSRWRKTVMASTSHTPAPAHSKKDKL--VVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..++..+...+ ..+++ ++|.||+|+||||+++.+++.+.
T Consensus 30 ~~~~~~~L~~~i----------~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFV----------DEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHH----------HTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------hcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344555555554 33444 89999999999999999999875
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.16 E-value=0.0013 Score=67.79 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=33.6
Q ss_pred cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312 35 RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP 85 (343)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~ 85 (343)
+..+++.++..+ ..+..++|+||+|||||||++.|++.+++
T Consensus 46 ~~~~l~~l~~~i----------~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 46 QEHAVEVIKTAA----------NQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CHHHHHHHHHHH----------HTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred chhhHhhccccc----------cCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344556666665 66789999999999999999999999873
No 285
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.13 E-value=0.0032 Score=57.46 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
....+.|.||+|+|||++|+.+++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456789999999999999999999876
No 286
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.08 E-value=0.0034 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..++|.||+|+|||++++.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998775
No 287
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.07 E-value=0.0025 Score=62.68 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la 80 (343)
.+.++.+++|+||+|||||||+..++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 45789999999999999999999775
No 288
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.06 E-value=0.0026 Score=60.18 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++ +.+|+||||||||+|+.+|.-.++
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHHhC
Confidence 345 999999999999999999987653
No 289
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.06 E-value=0.002 Score=58.40 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.-+.|.||+|+|||+|++.+++.++
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3477999999999999999999886
No 290
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.06 E-value=0.0038 Score=57.20 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||++++.+++.++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999987
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.03 E-value=0.0033 Score=60.32 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
+..+.|.||+|+|||++++.+++.++ ..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~-~~~ 100 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD-IPI 100 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-CCE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC-CCE
Confidence 45788999999999999999999986 444
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.02 E-value=0.0034 Score=57.87 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.4
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
...+.|+||+|+|||++++.+++.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 34799999999999999999999875
No 293
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.02 E-value=0.0025 Score=60.93 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|+|++|+|||||+..|+..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999998763
No 294
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.01 E-value=0.0017 Score=56.36 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=26.5
Q ss_pred cCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312 27 SPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~ 81 (343)
.+|.|+...+ .++.++++. +..-|+|+|++|+|||||+..+..
T Consensus 5 ~~~~~~~~~~-~l~~~~~~~-----------~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 5 FDWIYSGFSS-VLQFLGLYK-----------KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CH-HHHHHTCTT-----------CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHH-HHHHhhccC-----------CCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455665543 666666652 334688999999999999998864
No 295
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.99 E-value=0.0034 Score=62.09 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=29.7
Q ss_pred cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
-+++++.+ +.+..++|+|+||||||||++.|+...
T Consensus 147 ~~~i~lel----------k~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLEL----------MLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEE----------CCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEE----------cCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 35677776 778899999999999999999998764
No 296
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.99 E-value=0.003 Score=63.86 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=27.2
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+.+|.+++|+||||||||||++.++....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999998875
No 297
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.98 E-value=0.003 Score=67.70 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=28.1
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI 77 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~ 77 (343)
-|+++++.+ +++++++|.|.||||||||+.
T Consensus 25 NLkni~v~i----------P~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 25 NLKDISVKV----------PRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TCCSEEEEE----------ESSSEEEEESSTTSSHHHHHT
T ss_pred CCCCeeEEe----------cCCCEEEEECCCCCCHHHHHH
Confidence 689999998 899999999999999999985
No 298
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.97 E-value=0.0041 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||++|+.++....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 45688999999999999999998763
No 299
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.97 E-value=0.0052 Score=57.83 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
++.-+.|.||+|+|||+|++.++..++ ..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~-~~~ 79 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN-STF 79 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT-CEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC-CCE
Confidence 456799999999999999999999987 544
No 300
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.93 E-value=0.0042 Score=57.29 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+..+.|.||+|+|||++++.+++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999998874
No 301
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.92 E-value=0.0047 Score=55.67 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+|.+|+|.|+.||||||++..|++.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588999999999999999999999997
No 302
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.86 E-value=0.0044 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=22.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+.+|+|||||||||++.+|.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35999999999999999999876665
No 303
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.85 E-value=0.0041 Score=52.65 Aligned_cols=26 Identities=42% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
++..++|+|++|+|||||+..|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998753
No 304
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.85 E-value=0.003 Score=60.25 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
.|.-++|+|++|+||||++..|.+. + ..+|+.|.+.+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g-~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-G-HRLVADDNVEIRE 181 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-T-CEEEESSEEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-C-CceecCCeEEEEE
Confidence 5788999999999999999999886 4 6788888886654
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.0063 Score=57.57 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+++-+.|.||+|+|||+|++.+|..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 3457899999999999999999999883
No 306
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.84 E-value=0.0043 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
..++|+|++|+|||||+..+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 307
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.81 E-value=0.0047 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++|.||+|+|||++++.+++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998763
No 308
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.81 E-value=0.0037 Score=67.94 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=28.4
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID 78 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~ 78 (343)
-|+++++.+ +++++++|.|+||||||+||..
T Consensus 35 NLkni~v~i----------P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 35 NLRSVDLDL----------PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp SCCSEEEEE----------ESSSEEEEEESTTSSHHHHHTT
T ss_pred ccCceeeec----------cCCCEEEEECCCCCcHHHHHHH
Confidence 688999998 8899999999999999999854
No 309
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.81 E-value=0.0038 Score=67.69 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=28.7
Q ss_pred cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH
Q 019312 37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID 78 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~ 78 (343)
--|+++++.+ +++++++|.|+||||||+||..
T Consensus 32 hNLkni~v~i----------P~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 32 HNLKNIDVEI----------PRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp SSCCSEEEEE----------ETTSEEEEEESTTSSHHHHHTT
T ss_pred ccCCceeeec----------cCCcEEEEECCCCCCHHHHHHH
Confidence 3688999998 8999999999999999999753
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.80 E-value=0.0086 Score=50.50 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
....|+|+|++|+|||||+..+...-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999987653
No 311
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.0042 Score=58.49 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEcCCcccHHHHHHHHHhhc
Q 019312 62 VVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~~ 83 (343)
++|+||+|+||||+++.+++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999954
No 312
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.80 E-value=0.0057 Score=58.73 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+.+++|+|++|||||||+..|.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999998763
No 313
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0066 Score=60.26 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN 90 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs 90 (343)
..++=+.+.||.|||||.||+++|..++ ..+++
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~ 236 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIR 236 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-CCeEE
Confidence 4566789999999999999999999998 55443
No 314
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.0067 Score=58.11 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE 87 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e 87 (343)
.+..+.|.||+|+|||+|++.++..++ ..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~-~~ 144 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG-AT 144 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT-CE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC-Ce
Confidence 467899999999999999999999886 44
No 315
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.77 E-value=0.0054 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
...++|+|++|+|||||+..|++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 316
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.76 E-value=0.0062 Score=57.07 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
...+.|.||+|+|||++++.++..++
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999887
No 317
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.76 E-value=0.0055 Score=65.31 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.++..++|+||+|||||||++.|++.++
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35678899999999999999999999887
No 318
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.0047 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..+..++|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999877
No 319
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.74 E-value=0.0032 Score=68.09 Aligned_cols=31 Identities=39% Similarity=0.693 Sum_probs=28.3
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID 78 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~ 78 (343)
-|+++++.+ +++++++|.|+||||||+||..
T Consensus 13 NLkni~~~i----------p~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 13 NLKNITVRI----------PKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp TCCSBCCEE----------ETTSEEEEEESTTSSSHHHHTT
T ss_pred ccCcceecc----------CCCcEEEEECCCCCcHHHHHHH
Confidence 589999998 8999999999999999999853
No 320
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.73 E-value=0.005 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~ 81 (343)
+.+.+|+||||||||||+.++.-
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998744
No 321
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.72 E-value=0.0041 Score=60.30 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=26.1
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+.++.++.|.||+|||||||+..++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999999999875
No 322
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0074 Score=60.07 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
.+++=+.+.||.|||||.||+++|..++ ..++
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~-~~~~ 244 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG-ANFI 244 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC-CCEE
Confidence 4567889999999999999999999998 5543
No 323
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.0049 Score=57.68 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+..++|.||+|+|||+|++.++..+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35678999999999999999999977
No 324
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.70 E-value=0.0051 Score=61.40 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=25.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
+.-++++||+|+|||++++.||+.++ ..++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~-~~~~ 79 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN-APFI 79 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC-CCce
Confidence 45688999999999999999999998 5443
No 325
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.0077 Score=59.92 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
+.++=+.+.||.|||||.||+++|..++ ..++
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~-~~f~ 244 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN-ATFL 244 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC-CCEE
Confidence 4567889999999999999999999998 5543
No 326
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.69 E-value=0.0024 Score=52.95 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=22.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||++|+.++....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 35688999999999999999887654
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.68 E-value=0.0044 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~ 82 (343)
-++|+|++|+|||||+..+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 328
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.66 E-value=0.0047 Score=61.45 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.+++++||+||||||++..||..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998764
No 329
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.63 E-value=0.0075 Score=57.83 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
.+.-+.|.||+|+|||+|++.++..++ ..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~-~~~ 112 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN-STF 112 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT-CEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC-CCE
Confidence 345688999999999999999999987 544
No 330
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.61 E-value=0.004 Score=58.53 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEcCCcccHHHHHHHHHhh
Q 019312 62 VVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 62 i~I~GpTGsGKStla~~la~~ 82 (343)
|+|+||||+|||||++.|++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 389999999999999998875
No 331
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.61 E-value=0.0068 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+.+++|.||.||||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997777654
No 332
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.61 E-value=0.0072 Score=57.13 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=23.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.++|.||+|+|||+|++.+++.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999999885
No 333
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.57 E-value=0.0085 Score=57.85 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
+.-++|.||+|+|||+|++.++..++ ..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~-~~~ 176 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN-ATF 176 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT-CEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc-CcE
Confidence 57899999999999999999999987 554
No 334
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.56 E-value=0.0067 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+...|+|+|++|+|||||+..+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 335
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0082 Score=59.22 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN 90 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs 90 (343)
.+++=+.+.||.|||||.||+++|..++ ..+++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~ 212 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD-CKFIR 212 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT-CEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC-CCceE
Confidence 4456688999999999999999999998 65443
No 336
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.54 E-value=0.0068 Score=57.32 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=24.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||++++.+++.++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999999986
No 337
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.50 E-value=0.0099 Score=59.74 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
+-+.|+||+|+|||+|++.+++..+ ..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~-~~f 77 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEAN-VPF 77 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHT-CCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCe
Confidence 4488999999999999999999887 443
No 338
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.48 E-value=0.0048 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+..-|+|+|++|+|||||+..+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999987654
No 339
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.0094 Score=60.03 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
....++|.||+|+|||++++.+++.++ ..++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~-~~~i 106 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG-YDIL 106 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT-CEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-CCEE
Confidence 357899999999999999999999987 5543
No 340
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.43 E-value=0.0067 Score=58.40 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++++.++.|.||+|||||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999998654
No 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.01 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+...|+|+|++|||||||+..|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 342
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.41 E-value=0.0077 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~ 81 (343)
+++|.++.|.|++|+|||+|+..++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 56799999999999999999998764
No 343
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.36 E-value=0.0092 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=19.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHH
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la 80 (343)
..++.++|+|||||||||+...+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 357899999999999998765543
No 344
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.34 E-value=0.0098 Score=58.35 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+..+..++|+|++|+|||||.+.|.+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 466889999999999999999999983
No 345
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.0078 Score=56.64 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..+..++|.||+|+|||++++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999877
No 346
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.33 E-value=0.0093 Score=56.19 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+..++|.||+|+|||+|+.+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999765
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.33 E-value=0.009 Score=48.75 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.-++|+|++|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998754
No 348
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.01 Score=59.44 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
.+++=+.+.||.|||||.||+++|..++ ..++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi 272 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD-ATFI 272 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT-CEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC-CCeE
Confidence 4567889999999999999999999998 5543
No 349
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.30 E-value=0.0071 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..++|.||+|+|||++++.++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999886
No 350
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.30 E-value=0.012 Score=48.89 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.+...|+|+|++|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999764
No 351
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.28 E-value=0.0093 Score=57.01 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.++++.++.|.||+|||||+|+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999986
No 352
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.27 E-value=0.0087 Score=59.34 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.+++|+|++||||||++..||..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999886
No 353
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.27 E-value=0.0094 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 354
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.24 E-value=0.011 Score=53.50 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||++++.++...+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45788999999999999999998875
No 355
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.23 E-value=0.0093 Score=48.47 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=20.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhc
Q 019312 61 LVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~ 83 (343)
-|+|+|++|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998653
No 356
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.22 E-value=0.0079 Score=50.81 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.+..-|+|+|++|+|||||+..+...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999754
No 357
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.21 E-value=0.0056 Score=60.94 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+.+|+++|.+||||||+++.|++.+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999999875
No 358
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.20 E-value=0.0093 Score=50.78 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.18 E-value=0.013 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.-|+|+|++|+|||||+..|...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999997653
No 360
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.18 E-value=0.012 Score=58.31 Aligned_cols=29 Identities=14% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+|.+++|.|++|+|||||+..++....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999998653
No 361
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.18 E-value=0.015 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
....|+|+|++|+|||||+..|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999865
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.17 E-value=0.013 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
....++|+|++|+|||||+..|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.12 E-value=0.011 Score=48.10 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988754
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.11 E-value=0.0099 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..-|+|+|++|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998653
No 365
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.016 Score=57.68 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
..++=+.+.||.|+|||.||+++|..++ ..++
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi 245 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS-ATFL 245 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT-CEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC-CCEE
Confidence 4567799999999999999999999988 5543
No 366
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.09 E-value=0.0074 Score=56.79 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+++|+|++|+||||++..||..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998875
No 367
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.09 E-value=0.014 Score=57.70 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.-+.|.||+|+|||+|++.+|..+.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999999883
No 368
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.09 E-value=0.048 Score=55.26 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc-CCCceecCCceEEEecccccCCCCCcccccccCccc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF-FPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~-~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~l 119 (343)
.++..++|+|+||||||++++.|...+ ... +.+.+++| .+|.... ......++||-+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~-liDpK~~--el~~~~~lPhl~ 222 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFI-MIDPKML--ELSVYEGIPHLL 222 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEE-EECCSSS--GGGGGTTCTTBS
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEE-EECCchh--hhhhhccCCccc
Confidence 457889999999999999999886522 101 25677655 4554321 122344667643
No 369
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.012 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+..++|.||+|+|||++++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 370
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.011 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+.|.||+|+|||++++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999864
No 371
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.05 E-value=0.012 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 372
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.04 E-value=0.012 Score=51.32 Aligned_cols=27 Identities=37% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+...++|+|++|||||||+..|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988754
No 373
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.04 E-value=0.011 Score=58.88 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.+|+|+|++||||||++..||..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998664
No 374
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.04 E-value=0.012 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
--|+|+|++|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.03 E-value=0.011 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
...|+|+|++|+|||||+..|.+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4578999999999999999998754
No 376
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.03 E-value=0.012 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..-|+|+|++|||||||+..+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999887643
No 377
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.012 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.01 E-value=0.012 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhc
Q 019312 61 LVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~ 83 (343)
-|+|+|++|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987643
No 379
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.01 E-value=0.013 Score=54.81 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||+|++.++..++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45788999999999999999999887
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.00 E-value=0.013 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998864
No 381
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.00 E-value=0.011 Score=55.82 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++++.++.|.||+|||||+|+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45789999999999999999999998764
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.99 E-value=0.012 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~ 82 (343)
-|+|+|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 383
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.98 E-value=0.014 Score=54.93 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+.+|.+++|.|++|+|||||+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999998654
No 384
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.009 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 385
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.96 E-value=0.0094 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
...++|+|++|+|||||+..|.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999864
No 386
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.93 E-value=0.016 Score=55.31 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=24.3
Q ss_pred ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.+++++++. +.|+|+|++|||||||+..|.+.
T Consensus 26 ~l~~i~~~l-------------p~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 26 ALPTLWDSL-------------PAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CC----CCC-------------CEEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccC-------------CEEEEECCCCCcHHHHHHHHhCC
Confidence 566776665 48999999999999999999983
No 387
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.93 E-value=0.014 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 388
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.90 E-value=0.014 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~ 82 (343)
-|+|+|++|+|||||+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 389
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.90 E-value=0.01 Score=59.72 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++ +.+|+|+||||||+|+.+|.-.+.
T Consensus 59 ~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 59 GGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp CCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred CCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344 999999999999999999977754
No 390
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.90 E-value=0.013 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998754
No 391
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.89 E-value=0.017 Score=57.20 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
++.-+.+.||+|+|||++|+.+|+.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 346788999999999999999999986
No 392
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.88 E-value=0.016 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=23.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..++|.||+|+|||||++.+++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999999987
No 393
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.87 E-value=0.013 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357899999999999999999864
No 394
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.87 E-value=0.014 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 395
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.86 E-value=0.013 Score=48.26 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~ 82 (343)
-|+|+|++|+|||||+..+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999998754
No 396
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.84 E-value=0.018 Score=50.82 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+++++++.||.||||||.+..++..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999988876
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.83 E-value=0.015 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 398
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.82 E-value=0.014 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999875
No 399
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.78 E-value=0.013 Score=57.94 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+..++|.||+|+|||+|++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999876
No 400
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.77 E-value=0.016 Score=52.40 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++.+++|.||+|+||||++..++..+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999998887663
No 401
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.76 E-value=0.02 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+...|+|+|++|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999999653
No 402
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.74 E-value=0.0098 Score=63.40 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++..++|+||+|+|||+|++.+|+.++
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999999999987
No 403
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.73 E-value=0.01 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=22.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+.|.||+|+|||++++.++..++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 488999999999999999999876
No 404
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.72 E-value=0.022 Score=57.31 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEI 88 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eI 88 (343)
..+.-+.|.||+|+|||++++.++..++ ..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~-~~f 266 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-AFF 266 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS-SEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC-CCE
Confidence 3456789999999999999999999886 443
No 405
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.70 E-value=0.017 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+...|+|+|.+|||||||+..++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346889999999999999999998753
No 406
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.67 E-value=0.017 Score=48.34 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=20.8
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
--|+|+|++|+|||||+..|....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 407
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.66 E-value=0.027 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.7
Q ss_pred CCCCEEEEEcCCcccHHH-HHHHHHh
Q 019312 57 KKDKLVVIMGATGTGKSG-LSIDLAT 81 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKSt-la~~la~ 81 (343)
..+++.+|.||.|||||| |++.+..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n 43 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRR 43 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999995 4444443
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.65 E-value=0.017 Score=48.39 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 409
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.64 E-value=0.014 Score=54.85 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 55 HSKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 55 ~~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.++++.++.|.||+|||||+|+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4577899999999999999999999875
No 410
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.64 E-value=0.017 Score=48.80 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=20.5
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 411
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.64 E-value=0.018 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..|.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 412
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.64 E-value=0.014 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.1
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988753
No 413
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.63 E-value=0.02 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..-++|+||+|+|||++++.+++.+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999874
No 414
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.62 E-value=0.017 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999754
No 415
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.60 E-value=0.018 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~ 82 (343)
-|+|+|++|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 416
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.60 E-value=0.02 Score=54.48 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK 98 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~ 98 (343)
-.|.-++|.|++|+||||++..|.+. + ..+|+.|.+.+.+
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~~-G-~~lv~DD~v~i~~ 184 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLINK-N-HLFVGDDAIEIYR 184 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTT-T-CEEEEEEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-C-CEEEeCCEEEEEE
Confidence 35778999999999999999998763 4 6788888886553
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.60 E-value=0.02 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998754
No 418
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.59 E-value=0.017 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=20.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 347899999999999999888764
No 419
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.59 E-value=0.016 Score=47.61 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=19.8
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 35899999999999999988654
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.58 E-value=0.018 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.-|+|+|++|+|||||+..|....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988743
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.58 E-value=0.053 Score=51.82 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+..+|+|+|+.|+|||||+..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998876
No 422
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.56 E-value=0.02 Score=48.21 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.8
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
--|+|+|++|+|||||++.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999999999988887665
No 423
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.02 Score=54.57 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++..+.|.||+|+|||++++.+++.+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999874
No 424
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.55 E-value=0.019 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.--|+|+|++|+|||||+..+....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468899999999999999998643
No 425
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.55 E-value=0.019 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+..++|+||||||||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
No 426
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.55 E-value=0.017 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~ 81 (343)
+.+.+|+|+||||||+|.-+|.=
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999888864
No 427
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.54 E-value=0.028 Score=52.67 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||++|+.++...+
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc
Confidence 45688999999999999999998653
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.53 E-value=0.013 Score=58.08 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSD 92 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~D 92 (343)
++.+|+|+|++|+||||++..||..+. ..-+|++|
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 356999999999999999999998763 13455555
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.50 E-value=0.02 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 430
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.47 E-value=0.016 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 019312 61 LVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~ 82 (343)
-|+|+|++|+|||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 431
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.038 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..+.+.++.||.||||||.+..++...
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999999998888777654
No 432
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.45 E-value=0.023 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||.|+|||++++.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999886
No 433
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.44 E-value=0.021 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 434
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.42 E-value=0.039 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++.+.++.||.||||||.+..++...
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999999999988765
No 435
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.39 E-value=0.021 Score=58.26 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+.+|+|+|++||||||+++.|++.++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999999875
No 436
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.39 E-value=0.02 Score=47.99 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..-|+|+|++|+|||||+..+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999987643
No 437
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.35 E-value=0.016 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.....|+|+|++|+|||||+..+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988754
No 438
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.022 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.--|+|+|++|+|||||+..+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987643
No 439
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.33 E-value=0.023 Score=50.39 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+++|+|=|+-||||||++..|++.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999999885
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.31 E-value=0.023 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.2
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 441
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.30 E-value=0.021 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
....|+|+|++|+|||||+..|.+.-
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999987653
No 442
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.27 E-value=0.019 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..|...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998754
No 443
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.26 E-value=0.032 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.-|+|+|++|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999988643
No 444
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.26 E-value=0.022 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.25 E-value=0.02 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 446
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.23 E-value=0.024 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..-|+|+|++|+|||||+..|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999997653
No 447
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.029 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=22.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
..+.|.||+|+|||++++.+++.+.
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3589999999999999999999864
No 448
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.21 E-value=0.026 Score=51.68 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=28.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~ 94 (343)
.+|+|+|+.||||||++..|...++ ..+++.+..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g-~~~~~~~~~ 35 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS-AVKYQLAGP 35 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC-EEECCTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CeEEecChH
Confidence 4799999999999999999998777 666655544
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.21 E-value=0.024 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.-|+|+|++|+|||||+..|....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 450
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.21 E-value=0.027 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.3
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999877654
No 451
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.20 E-value=0.023 Score=54.85 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
++++.++.|.|++|||||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999998754
No 452
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.16 E-value=0.032 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+..+++++|..|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 556789999999999999999999665
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.16 E-value=0.021 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+...++|+|++|+|||||+..+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999998754
No 454
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.13 E-value=0.026 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.++.+.||+|+|||++++.+++.++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 46778889999999999999999986
No 455
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.13 E-value=0.018 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHH
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLA 80 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la 80 (343)
+...|+|+|++|+|||||+..+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35678999999999999998876
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.025 Score=47.95 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..|...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 457899999999999999999864
No 457
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.025 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
--|+|+|++|+|||||+..+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998653
No 458
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.10 E-value=0.025 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 459
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.09 E-value=0.026 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
..|+|+|++|||||||...|.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999765
No 460
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.07 E-value=0.029 Score=48.03 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+..-|+|+|++|+|||+|+..+...+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456789999999999999988776554
No 461
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.023 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.--|+|+|++|+|||||+..+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3478999999999999999998754
No 462
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=94.06 E-value=0.13 Score=48.89 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR 136 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~ 136 (343)
...+.|+|+|| ||++|...|...++ |.+ +..+.. ++ ++....|.
T Consensus 143 ~~~RPvVl~GP---~k~~l~~~L~~~~P-------~~F----~~~v~~------~r----------------~i~~~~fi 186 (308)
T 3kfv_A 143 SFKRPVVILGP---VADIAMQKLTAEMP-------DQF----EIAETV------SR----------------TDSPSKII 186 (308)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCT-------TTE----EECCCC------------------------------CC
T ss_pred CCCCeEEEeCc---cHHHHHHHHHHhCc-------ccc----cccccc------cc----------------cccCCCee
Confidence 44577899999 69999999998876 333 222210 00 01122333
Q ss_pred hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312 137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR 214 (343)
Q Consensus 137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 214 (343)
....|.++.++|+.+||- +|++.. +.+.....+.+.+|.++++.++|.+| ..|
T Consensus 187 --s~~~V~~vl~~Gk~~ILD--------------Id~QGa--------~~lk~~~~~pi~IFI~PPS~eeL~~r-r~R 239 (308)
T 3kfv_A 187 --KLDTVRVIAEKDKHALLD--------------VTPSAI--------ERLNYVQYYPIVVFFIPESRPALKAL-RQW 239 (308)
T ss_dssp --CHHHHHHHHHTTCEEEEC--------------CCHHHH--------HHHHHTTCCCEEEEEEESCHHHHHHH-HHH
T ss_pred --cHHHHHHHHHCCCcEEEE--------------ECHHHH--------HHHHhcCCCCEEEEEeCCCHHHHHHH-Hhc
Confidence 567888999999988773 233221 01111112346678889999999997 445
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.05 E-value=0.026 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLAT 81 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~ 81 (343)
..-|+|+|++|+|||||+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35789999999999999999884
No 464
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.05 E-value=0.027 Score=55.83 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
++.+|+|+|++|+||||++..||..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999665
No 465
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.02 E-value=0.031 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+.+|.+++|.|++|+|||+|+..++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999998765
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.02 E-value=0.028 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
No 467
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.01 E-value=0.036 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 468
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.01 E-value=0.02 Score=54.90 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+.++.++.|.||+|+|||+|+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356778899999999999999999876
No 469
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.98 E-value=0.028 Score=47.26 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+..-|+|+|++|+|||||+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998754
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.029 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999864
No 471
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.96 E-value=0.029 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+..-|+|+|++|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34678999999999999999997643
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.022 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.0
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.-|+|+|++|+|||||+..|....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999997653
No 473
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.93 E-value=0.034 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
...|+|+|++|+|||||+..|.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988753
No 474
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.91 E-value=0.029 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 475
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.90 E-value=0.028 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..-|+|+|++|+|||||+..|....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4568999999999999999998753
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.90 E-value=0.03 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+.--|+|+|++|+|||||+..+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999988754
No 477
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.89 E-value=0.028 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.4
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 478
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.89 E-value=0.031 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhc
Q 019312 61 LVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~ 83 (343)
.+.|.||+|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 479
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.87 E-value=0.034 Score=59.32 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII 89 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII 89 (343)
.+++=|.+.||.|+|||+|++++|..++ ..++
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg-~~~~ 267 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-AFFF 267 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT-CEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC-CeEE
Confidence 4567889999999999999999999987 5443
No 480
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.86 E-value=0.035 Score=47.99 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+...|+|+|++|+|||||+..+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998643
No 481
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.84 E-value=0.026 Score=54.53 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.8
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhc
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~ 83 (343)
+.++|+|+||||||||+..|.+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999998653
No 482
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.81 E-value=0.036 Score=53.25 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 56 SKKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 56 ~~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
..++.+++|.|++|+|||||+..+|...
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4779999999999999999999998765
No 483
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.78 E-value=0.033 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
...-|+|+|++|+|||||+..+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998854
No 484
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.78 E-value=0.033 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+...|+|+|++|+|||||+..|.+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999864
No 485
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.76 E-value=0.029 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
...|+|+|.+|+|||||+..|.+.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999987653
No 486
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.036 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhcC
Q 019312 61 LVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 61 ~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.++|.||.|+|||++++.+++.+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 389999999999999999998863
No 487
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.037 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~ 82 (343)
+...|+|+|++|+|||||+..+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999998853
No 488
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.032 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 489
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.66 E-value=0.039 Score=57.97 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.-++|+||+|+|||++++.||+.+.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999873
No 490
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.66 E-value=0.036 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
.--|+|+|++|+|||||+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998864
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.65 E-value=0.035 Score=47.66 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.3
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|.+|+|||||+..+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.65 E-value=0.041 Score=50.86 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+.+++|.||.|+|||+|++.+++..+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 37999999999999999999998754
No 493
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.62 E-value=0.031 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.7
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
--|+|+|++|+|||||+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998753
No 494
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.56 E-value=0.027 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhh
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~ 82 (343)
..-|+|+|++|+|||||+..+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999998643
No 495
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.54 E-value=0.035 Score=56.16 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 57 KKDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 57 ~~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999655
No 496
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.53 E-value=0.039 Score=51.02 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.9
Q ss_pred CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 60 KLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
.+++|.||.|+|||+|+..+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 5999999999999999999998765
No 497
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.47 E-value=0.034 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
...++|+|++|+|||||+..|.+..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998764
No 498
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.44 E-value=0.039 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred CEEEEEcCCcccHHHHHHHHHhh
Q 019312 60 KLVVIMGATGTGKSGLSIDLATR 82 (343)
Q Consensus 60 ~~i~I~GpTGsGKStla~~la~~ 82 (343)
.-|+|+|++|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999865
No 499
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.036 Score=52.90 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312 58 KDKLVVIMGATGTGKSGLSIDLATRF 83 (343)
Q Consensus 58 ~~~~i~I~GpTGsGKStla~~la~~~ 83 (343)
....++|+|++|+|||||+..|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998653
No 500
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.38 E-value=0.039 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.8
Q ss_pred CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312 59 DKLVVIMGATGTGKSGLSIDLATRFF 84 (343)
Q Consensus 59 ~~~i~I~GpTGsGKStla~~la~~~~ 84 (343)
+..+.|.||+|+|||+||+.|+..+.
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 56889999999999999999999875
Done!