BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019313
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
Length = 427
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 8/177 (4%)
Query: 163 DKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLR-VLDSSAAL 221
DK+ Q+ E+I + P + I V+ I P ++ + E + +
Sbjct: 237 DKIWQKSCTVFERIRANL--NPPLYSMIFAVVVAAIGPLQRELFMEDGFINNTFAEAVTQ 294
Query: 222 VGEAAIPAMTLVIGANLLSG---LKRSGVGVSLIMGIIAIRYILLP--LLGIVIVKAAYR 276
+G +IP + +V+G+NL ++ L++G I R IL LL I+ + Y
Sbjct: 295 LGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMILPSCFLLPIIAIAVKYI 354
Query: 277 FGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTL 333
I D ++ + L PPA+ + I QL E E+E + IL W YAV + +++
Sbjct: 355 NVSILDDPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVLSLPVSI 411
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
Length = 452
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 140/340 (41%), Gaps = 32/340 (9%)
Query: 15 LAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNS------PFGDTSVCS 68
++++L K+ R P + C + N +L L +V ++ P +
Sbjct: 96 ISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDLLWDKIPDDTPDKVA 155
Query: 69 SYGKAYASLSMAVGAIYIWTYVYYVM--------SLYL-NKSVSDAGTNKDSRIHIISSG 119
S G Y + +G W+Y Y ++ L + N+S S + N++ ++++S
Sbjct: 156 SRGIMYLLIFSQLGQALRWSYGYRILLSPNQPEDPLPIGNRSWSHSDVNEEEIQNLLASS 215
Query: 120 ESSTNI--FLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKID 177
+ + ++++ + + + +Q ET + +I+KF +
Sbjct: 216 ANVDGVQNSVQANEGSTVQTDSSAISKNDNVQVET--SNEEVGGFGAASSKISKFI--VL 271
Query: 178 LKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLR-VLDSSAALVGEAAIPAMTLVIGA 236
L F+P + I I + P ++ E + + + S + G+ A+P + +V+GA
Sbjct: 272 LLDFFSPPLYSLFIALFIAVVPPLQRFFFEEGSFVEGSITSGIRMAGQVAVPMILVVLGA 331
Query: 237 NLLSGLK--------RSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGS--DSLY 286
+L + + R +I+ + R +++PL + F I + D ++
Sbjct: 332 SLATDISKTEPTQEVRKNNDTRVIIVCLLGRMVVVPLALLPAFSLLSYFSEISTVDDPVF 391
Query: 287 QFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAV 326
++ L P A+ + I QL E EC+ +L W+YAV
Sbjct: 392 VVVIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAV 431
>sp|Q7MFC2|MALF_VIBVY Maltose transport system permease protein MalF OS=Vibrio vulnificus
(strain YJ016) GN=malF PE=3 SV=1
Length = 523
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 213 RVLDSSAALVGEAAIPAMTLVIGANLL------SGLKRSGVGVSLIMGIIAIRYILLPLL 266
+ +D + VG P + IG + G+K + + + + +I +LL L+
Sbjct: 247 QAMDEAGNFVGNTVSPGFVVQIGTDNFERVWKDDGIKEPFISIFIWTVVFSILTVLLTLM 306
Query: 267 GIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVIL 320
+++ + ++ + ++Y+ +L+L YAVP +++ LF S E +++L
Sbjct: 307 IGLVLASVVQWEELKGRAIYRVLLILPYAVPAFISILIFKGLFNQSFGEINMVL 360
>sp|Q8D3U8|MALF_VIBVU Maltose transport system permease protein MalF OS=Vibrio vulnificus
(strain CMCP6) GN=malF PE=3 SV=1
Length = 523
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 213 RVLDSSAALVGEAAIPAMTLVIGANLL------SGLKRSGVGVSLIMGIIAIRYILLPLL 266
+ +D + VG P + IG + G+K + + + + +I +LL L+
Sbjct: 247 QAMDEAGNFVGNTVSPGFVVQIGTDNFERVWKDDGIKEPFISIFIWTVVFSILTVLLTLM 306
Query: 267 GIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVIL 320
+++ + ++ + ++Y+ +L+L YAVP +++ LF S E +++L
Sbjct: 307 IGLVLASVVQWEELKGRAIYRVLLILPYAVPAFISILIFKGLFNQSFGEINMVL 360
>sp|P42432|NASA_BACSU Nitrate transporter OS=Bacillus subtilis (strain 168) GN=nasA PE=2
SV=2
Length = 401
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 26 PPHLQGLVIGCCSAGNMGNLLLIIV-PAVCEE 56
PPHLQGL +G AGN G L + P + E+
Sbjct: 131 PPHLQGLAMGIAGAGNSGTLFATLFGPRLAEQ 162
>sp|Q2KIV1|S22A9_BOVIN Solute carrier family 22 member 9 OS=Bos taurus GN=SLC22A9 PE=2
SV=1
Length = 552
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 11 IGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT 64
IG+ALA +L+ +T PHL ++ G CS +G L +VP + E N P D+
Sbjct: 478 IGAALAPLLMILTVYSPHLPWIIYGVCSI--LGGL---VVPLLPETRNKPLPDS 526
>sp|Q55DV2|GDT6_DICDI Probable inactive serine/threonine-protein kinase gdt6
OS=Dictyostelium discoideum GN=gdt6 PE=3 SV=1
Length = 1452
Score = 32.0 bits (71), Expect = 6.4, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 177 DLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGA 236
D K+IF+P+ + +IGF+ GT FR + E + ++ + + + + + G+
Sbjct: 341 DTKLIFSPNNTSEVIGFINGTNQRFRSSLYIEFSNNVIIKNCVIIESSSETRSPLVFFGS 400
Query: 237 N--LLSGLKRSGVGVSLI 252
N L L S G SLI
Sbjct: 401 NVYLSDNLISSKSGSSLI 418
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,665,795
Number of Sequences: 539616
Number of extensions: 4612417
Number of successful extensions: 16190
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 16179
Number of HSP's gapped (non-prelim): 31
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)