Query 019313
Match_columns 343
No_of_seqs 158 out of 909
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 7.6E-58 1.6E-62 428.6 15.4 325 1-343 78-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 8.7E-38 1.9E-42 306.3 26.0 309 2-335 66-385 (385)
3 TIGR00946 2a69 he Auxin Efflux 100.0 1.3E-30 2.8E-35 250.4 21.7 241 7-338 76-320 (321)
4 PRK09903 putative transporter 100.0 4E-30 8.7E-35 246.3 23.7 243 5-343 71-314 (314)
5 COG0679 Predicted permeases [G 100.0 3.5E-28 7.5E-33 232.6 20.6 239 5-340 70-309 (311)
6 TIGR00841 bass bile acid trans 99.0 2.7E-09 5.8E-14 101.2 10.3 108 227-340 14-122 (286)
7 PF01758 SBF: Sodium Bile acid 98.2 9.2E-06 2E-10 72.2 10.5 109 227-340 4-113 (187)
8 TIGR00832 acr3 arsenical-resis 98.1 7.2E-05 1.6E-09 72.4 14.7 141 183-339 10-157 (328)
9 COG0385 Predicted Na+-dependen 98.0 5.2E-05 1.1E-09 72.4 10.9 110 224-339 41-151 (319)
10 PF13593 DUF4137: SBF-like CPA 97.4 0.0024 5.3E-08 61.4 12.5 115 221-339 31-147 (313)
11 COG0798 ACR3 Arsenite efflux p 95.6 0.23 5E-06 47.8 12.6 138 185-341 20-167 (342)
12 TIGR00841 bass bile acid trans 93.5 0.35 7.5E-06 45.9 8.2 74 5-88 201-274 (286)
13 COG0385 Predicted Na+-dependen 81.9 6.1 0.00013 38.1 7.7 47 3-49 227-274 (319)
14 PF04172 LrgB: LrgB-like famil 77.4 31 0.00068 31.4 10.5 139 179-336 17-156 (215)
15 KOG2718 Na+-bile acid cotransp 76.3 2.8 6E-05 41.3 3.6 106 229-340 121-228 (371)
16 TIGR00832 acr3 arsenical-resis 74.1 3.1 6.8E-05 40.3 3.4 44 6-49 253-297 (328)
17 PRK12460 2-keto-3-deoxyglucona 72.3 96 0.0021 29.9 15.5 19 8-26 81-99 (312)
18 TIGR03082 Gneg_AbrB_dup membra 70.6 56 0.0012 27.9 10.0 44 292-335 109-153 (156)
19 KOG4821 Predicted Na+-dependen 70.6 14 0.00031 33.6 6.4 82 248-335 82-164 (287)
20 PRK03562 glutathione-regulated 69.8 1.3E+02 0.0029 31.7 14.6 121 214-340 261-381 (621)
21 PF03812 KdgT: 2-keto-3-deoxyg 69.8 49 0.0011 31.9 10.1 93 215-315 39-139 (314)
22 PRK03659 glutathione-regulated 68.7 1.4E+02 0.0031 31.4 14.4 119 215-339 259-377 (601)
23 PF13593 DUF4137: SBF-like CPA 67.4 20 0.00043 34.5 7.2 47 7-54 234-280 (313)
24 PRK10711 hypothetical protein; 66.6 1.1E+02 0.0023 28.3 11.8 138 179-335 28-166 (231)
25 PF03601 Cons_hypoth698: Conse 65.7 77 0.0017 30.4 10.8 50 181-240 25-75 (305)
26 COG1346 LrgB Putative effector 64.2 1.1E+02 0.0023 28.3 10.7 138 180-336 31-169 (230)
27 COG2855 Predicted membrane pro 59.0 1.1E+02 0.0025 29.7 10.6 130 182-331 37-168 (334)
28 PF05145 AmoA: Putative ammoni 51.8 1.3E+02 0.0027 29.0 9.8 104 229-338 29-134 (318)
29 COG3180 AbrB Putative ammonia 43.7 2.1E+02 0.0046 28.1 9.8 82 230-317 63-146 (352)
30 PRK12460 2-keto-3-deoxyglucona 41.0 1.1E+02 0.0023 29.6 7.2 81 227-315 51-134 (312)
31 COG3329 Predicted permease [Ge 40.0 3.6E+02 0.0078 26.2 12.1 55 179-241 213-267 (372)
32 TIGR00659 conserved hypothetic 39.9 3E+02 0.0065 25.3 11.9 138 179-335 27-165 (226)
33 PRK04288 antiholin-like protei 38.6 3.2E+02 0.007 25.2 12.1 138 179-335 33-171 (232)
34 PRK03562 glutathione-regulated 31.9 3.2E+02 0.007 28.9 9.8 53 178-240 24-77 (621)
35 PF05684 DUF819: Protein of un 30.8 5.4E+02 0.012 25.4 14.0 137 180-334 23-164 (378)
36 TIGR00698 conserved hypothetic 29.7 5.2E+02 0.011 25.1 10.1 51 182-240 31-81 (335)
37 PF03812 KdgT: 2-keto-3-deoxyg 27.5 5.7E+02 0.012 24.7 13.2 116 215-340 191-311 (314)
38 PRK09546 zntB zinc transporter 26.5 1.6E+02 0.0034 28.2 6.0 59 215-279 263-323 (324)
39 TIGR00793 kdgT 2-keto-3-deoxyg 25.2 1.3E+02 0.0029 28.9 5.0 80 228-315 52-139 (314)
40 PF10766 DUF2592: Protein of u 24.7 85 0.0018 20.6 2.5 20 178-197 7-26 (41)
41 PF09925 DUF2157: Predicted me 24.3 4.2E+02 0.0091 22.0 8.1 42 282-323 86-127 (145)
42 PF06295 DUF1043: Protein of u 23.7 79 0.0017 26.2 2.9 22 5-26 2-23 (128)
43 KOG1397 Ca2+/H+ antiporter VCX 22.1 7.4E+02 0.016 24.9 9.4 154 183-336 76-248 (441)
44 TIGR00383 corA magnesium Mg(2+ 21.3 2.5E+02 0.0055 26.4 6.3 62 213-280 255-318 (318)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.6e-58 Score=428.57 Aligned_cols=325 Identities=47% Similarity=0.839 Sum_probs=268.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcchHHHHHHHHhhhcCCCCCCChhhHhhhhHHHHHHHHH
Q 019313 1 MPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMA 80 (343)
Q Consensus 1 ~p~~~~l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~~~~fg~~~~~~~~g~~Yv~iy~~ 80 (343)
||||+.+++++|.++||++.|++|.|++.|++.+++|+|||+|++|+.++.|+|++++.||||+|.|..||++|+++++.
T Consensus 78 iPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~ 157 (408)
T KOG2722|consen 78 IPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQ 157 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhccccccccccc-cccccCCCCCCCcccccCCCCCC----ccccccCCCCCCCCCCCCCCCCCccchhccccc
Q 019313 81 VGAIYIWTYVYYVMSLYLN-KSVSDAGTNKDSRIHIISSGESS----TNIFLESSRKPLLHSSDRRSPDDSQIQAETRST 155 (343)
Q Consensus 81 v~~ll~wt~G~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (343)
++++++|||||+++.+... ..+..++.+ +++..|.. .+++|+++++++.+.+..++ +.|
T Consensus 158 lg~il~wty~Y~~~~~p~~~~~~~~~~~~------Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~--~~~-------- 221 (408)
T KOG2722|consen 158 LGQILRWTYVYRMLLPPNLELMSALKESP------VEALLESVPQPSVESDEDSTCKTLLLASKENR--NNQ-------- 221 (408)
T ss_pred hhhhEEEEEEeeeecCCchhhhhcCChhh------hhhhhhccCCCCcccccccccccccccccccC--CCc--------
Confidence 9999999999998876632 111111100 00000000 01112222222222221111 111
Q ss_pred CCCCchhHHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHh
Q 019313 156 KSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIG 235 (343)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG 235 (343)
....+.+.+++.+...++..+|.+++||++|.++|++++.+||||+++|+.+.|+++++|+++.+|++++|+.++++|
T Consensus 222 --~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLG 299 (408)
T KOG2722|consen 222 --VVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLG 299 (408)
T ss_pred --eeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhc
Confidence 111222222221222233347999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC-CChHHHHHHHHhccCchHHHHHHHHHHcCCChH
Q 019313 236 ANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG-SDSLYQFILLLQYAVPPALAVGTIIQLFETSES 314 (343)
Q Consensus 236 ~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~-~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~ 314 (343)
++|.++++++..+.+.++...+.|++++|.++++++..+.++|.++ +||++++|+++|.++|+|+|...+||.+|..|+
T Consensus 300 gnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~ 379 (408)
T KOG2722|consen 300 GNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAER 379 (408)
T ss_pred cccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHH
Confidence 9999999999989999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019313 315 ECSVILLWTYAVAAFALTLWITFYIWLLT 343 (343)
Q Consensus 315 ~~s~~~~~stllsivTipl~~~~~l~~~~ 343 (343)
|+|.+++|+|+++.+.+++|.++|.+++.
T Consensus 380 Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 380 ECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 99999999999999999999999999873
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=8.7e-38 Score=306.27 Aligned_cols=309 Identities=29% Similarity=0.439 Sum_probs=220.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcchHHHHHHHHhhhcCCCCCCChhhHhhhhHHHHHHHHHH
Q 019313 2 PVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAV 81 (343)
Q Consensus 2 p~~~~l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~~~~fg~~~~~~~~g~~Yv~iy~~v 81 (343)
++...+.++++.+++|++.|++|.++++|+.+..+++|+|++++|+|+++++ ||+ +|+.|+.+|.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~ 132 (385)
T PF03547_consen 66 PVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVV 132 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHh
Confidence 5677888999999999999999999999999999999999999999999997 553 799999999999
Q ss_pred hhhhhhhccccccccccccccccCCCCCC-Cc-ccccC------CCCCC-cccccc-CCCCCCCCCCCCCC-CCCccchh
Q 019313 82 GAIYIWTYVYYVMSLYLNKSVSDAGTNKD-SR-IHIIS------SGESS-TNIFLE-SSRKPLLHSSDRRS-PDDSQIQA 150 (343)
Q Consensus 82 ~~ll~wt~G~~ll~~~~~~~~~~~~~~~~-~~-~~~~~------~~~~~-~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~ 150 (343)
+++++|++|+.+++.++++.+..++..++ ++ .+... .++++ ...+|+ .+.++.....+..+ ++.++.+
T Consensus 133 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (385)
T PF03547_consen 133 NNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS- 211 (385)
T ss_pred hHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc-
Confidence 99999999999998765543322111110 00 00000 00000 000000 00000000000000 0000000
Q ss_pred cccccCCCCchhHHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHH
Q 019313 151 ETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAM 230 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ 230 (343)
..++++.....+.+.++..++...+..+|.++||+++|.++|++++++|+.+++++. .++.++++++|++++|++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~ 286 (385)
T PF03547_consen 212 TSPSPSNSTGAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLA 286 (385)
T ss_pred cCCcccccchhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHH
Confidence 000000111111111111111112222578899999999999999999998876553 789999999999999999
Q ss_pred HHHHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcC
Q 019313 231 TLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFE 310 (343)
Q Consensus 231 ll~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~ 310 (343)
|+++|++|++++.+...+++.....++.|++++|+++++++++ +..|+....++++++|+|+|++..++|++||
T Consensus 287 l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~------~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~ 360 (385)
T PF03547_consen 287 LFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFL------LGLDGDMARVLILQAAMPTAINSFVIASLYG 360 (385)
T ss_pred HHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHhccCCchHHHHHHHHHhC
Confidence 9999999998665555666777778999999999999999874 3467778999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 019313 311 TSESECSVILLWTYAVAAFALTLWI 335 (343)
Q Consensus 311 ~~~~~~s~~~~~stllsivTipl~~ 335 (343)
.+++++++.++|||+++++|+|+|+
T Consensus 361 ~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 361 LDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999995
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.97 E-value=1.3e-30 Score=250.36 Aligned_cols=241 Identities=16% Similarity=0.185 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCCCCceeeEeecCCcchHHHHHHHHhhhcCCCCCCChhhHhhhh---HHHHHHHHHHh
Q 019313 7 LSFLIGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYG---KAYASLSMAVG 82 (343)
Q Consensus 7 l~~~v~~l~g~~~~~-l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~~~~fg~~~~~~~~g---~~Yv~iy~~v~ 82 (343)
..+++..+++|...| .+|.++++++....++.|+|++++++|+++++ ||+ +| ..|+..+.+.+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~ 142 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGA 142 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhcc
Confidence 345566788899888 78889899999999999999999999999997 664 34 78899999999
Q ss_pred hhhhhhccccccccccccccccCCCCCCCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCccchhcccccCCCCchh
Q 019313 83 AIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFL 162 (343)
Q Consensus 83 ~ll~wt~G~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (343)
++..|++|+.+.+..++ +++ + . .++++
T Consensus 143 ~~~~~~~~~~~~~~~~~--------~~~-------------------------------~--~------------~~~~~ 169 (321)
T TIGR00946 143 VLMTIALGLFLVSEDGA--------GGE-------------------------------G--S------------GESTR 169 (321)
T ss_pred chhHHHHHHHHhccccc--------ccc-------------------------------c--c------------chhHH
Confidence 99999999876643311 000 0 0 00011
Q ss_pred HHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhccccc
Q 019313 163 DKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGL 242 (343)
Q Consensus 163 ~~~~~~~~~~~~~~~~k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~ 242 (343)
+..++.+ .|.++||+++|+++|++++..+. ..| .++.++++++|++++|++|+++|++++...
T Consensus 170 ~~~~~~~--------~~~~~nP~iia~i~Gl~~~~~~i--------~lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~~~ 232 (321)
T TIGR00946 170 LMLIFVW--------KKLIKFPPLWAPLLSVILSLVGF--------KMP-GLILKSISILSGATTPMALFSLGLALSPRK 232 (321)
T ss_pred HHHHHHH--------HHHHhCCChHHHHHHHHHHHHhh--------cCc-HHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence 1111111 24457999999999999987542 334 899999999999999999999999998622
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHH
Q 019313 243 KRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLW 322 (343)
Q Consensus 243 ~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~ 322 (343)
.+.+++.++..+++|+++.|++++.+.. +++.|+....++++++|||+|.+..++|++||.|++++++.+++
T Consensus 233 --~~~~~~~~~~~~~~klil~P~i~~~~~~------~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~ 304 (321)
T TIGR00946 233 --IKLGVRDAILALIVRFLVQPAVMAGISK------LIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTL 304 (321)
T ss_pred --hccChHHHHHHHHHHHHHHHHHHHHHHH------HhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 2234578888999999999999988775 35678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 019313 323 TYAVAAFALTLWITFY 338 (343)
Q Consensus 323 stllsivTipl~~~~~ 338 (343)
||++|++|+|+|+.++
T Consensus 305 sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 305 STVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.97 E-value=4e-30 Score=246.31 Aligned_cols=243 Identities=15% Similarity=0.166 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHHHH-HhCCCCCCCCceeeEeecCCcchHHHHHHHHhhhcCCCCCCChhhHhhhhHHHHHHHHHHhh
Q 019313 5 ILLSFLIGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGA 83 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~-l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~~~~fg~~~~~~~~g~~Yv~iy~~v~~ 83 (343)
..+.++++.+++|++.| .+|.++++++.....++++|+|++++|+++++ ||++.. .|+.|+..+ .+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~-~~~~ 139 (314)
T PRK09903 71 SLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIIS-IIVN 139 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHH-HHHH
Confidence 34555667777887775 55667677778888899999999999999996 775210 156555554 4689
Q ss_pred hhhhhccccccccccccccccCCCCCCCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCccchhcccccCCCCchhH
Q 019313 84 IYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLD 163 (343)
Q Consensus 84 ll~wt~G~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (343)
++.|++|.++++..+. +++ +. +
T Consensus 140 ~~~~~~g~~~~~~~~~--------~~~----------------------------------~~------------~---- 161 (314)
T PRK09903 140 AITIPIGLYLLNPSSG--------ADG----------------------------------KK------------N---- 161 (314)
T ss_pred HHHHHHHHHHHccccc--------ccc----------------------------------cc------------c----
Confidence 9999999998865321 000 00 0
Q ss_pred HHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccc
Q 019313 164 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLK 243 (343)
Q Consensus 164 ~~~~~~~~~~~~~~~k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~ 243 (343)
..++.+ ++.++||+++|+++|+++.+. +...| .++.++++++|++++|++|+.+|++|++...
T Consensus 162 ~~~~~l--------~~~~~nP~iia~~~gl~~~l~--------~i~lP-~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~ 224 (314)
T PRK09903 162 SNLSAL--------ISAAKEPVVWAPVLATILVLV--------GVKIP-AAWDPTFNLIAKANSGVAVFAAGLTLAAHKF 224 (314)
T ss_pred hHHHHH--------HHHHhchHHHHHHHHHHHHHc--------CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 001111 244589999999999998753 23334 8999999999999999999999999998432
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHH
Q 019313 244 RSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWT 323 (343)
Q Consensus 244 ~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~s 323 (343)
+. ++..+..++.|+++.|++++.+++ +++.|+....++++++|||+|+++.++|++||.|++.+++.++.|
T Consensus 225 --~~-~~~~~~~~~~Kli~~P~i~~~~~~------~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~s 295 (314)
T PRK09903 225 --EF-SAEIAYNTFLKLILMPLALLLVGM------ACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVS 295 (314)
T ss_pred --cc-cHHHHHHHHHHHHHHHHHHHHHHH------HcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22 256778899999999999987665 246688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 019313 324 YAVAAFALTLWITFYIWLLT 343 (343)
Q Consensus 324 tllsivTipl~~~~~l~~~~ 343 (343)
|++|++|+|+|+.+ ++++|
T Consensus 296 Tlls~iTlpl~~~l-~~~~~ 314 (314)
T PRK09903 296 VLGFVVTAPLWIYV-SRLVS 314 (314)
T ss_pred HHHHHHHHHHHHHH-HHhhC
Confidence 99999999999986 55443
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=3.5e-28 Score=232.60 Aligned_cols=239 Identities=21% Similarity=0.329 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHHHHHHh-CCCCCCCCceeeEeecCCcchHHHHHHHHhhhcCCCCCCChhhHhhhhHHHHHHHHHHhh
Q 019313 5 ILLSFLIGSALAWILIKIT-RTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGA 83 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l~-~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~~~~fg~~~~~~~~g~~Yv~iy~~v~~ 83 (343)
.++.+++..+.++++.|.+ +.+++++..+..+.+|+|+|++|+|+..++ ||+ +|+.|+++|...++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~ 136 (311)
T COG0679 70 SLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGL 136 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHH
Confidence 4455555555555555554 566667789999999999999999999885 885 79999999999999
Q ss_pred hhhhhccccccccccccccccCCCCCCCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCccchhcccccCCCCchhH
Q 019313 84 IYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLD 163 (343)
Q Consensus 84 ll~wt~G~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (343)
+.+|++|+..+...+. + .+
T Consensus 137 ~~~~~~g~~~l~~~~~---------~-----------------------------------~~----------------- 155 (311)
T COG0679 137 FLMFTLGVILLARSGG---------G-----------------------------------TN----------------- 155 (311)
T ss_pred HHHHHHHHHHHHHhcC---------C-----------------------------------ch-----------------
Confidence 9999999999876531 1 00
Q ss_pred HHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccc
Q 019313 164 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLK 243 (343)
Q Consensus 164 ~~~~~~~~~~~~~~~k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~ 243 (343)
+...+.. .+.+.||+++|.++|+++...+ ...| ..+.++++++|++++|++|+++|++|+. .+
T Consensus 156 ---~~~~~~~----~~~~~nP~i~a~i~g~~~~~~~--------i~lP-~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~ 218 (311)
T COG0679 156 ---KSLLSVL----KKLLTNPLIIALILGLLLNLLG--------ISLP-APLDTAVDLLASAASPLALIALGLSLAF-LK 218 (311)
T ss_pred ---hHHHHHH----HHHHhCcHHHHHHHHHHHHHcC--------CCCc-HHHHHHHHHHHHhhhhHHHHHHhhhcch-hh
Confidence 0001111 2555899999999999997643 2334 7899999999999999999999999998 44
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHH
Q 019313 244 RSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWT 323 (343)
Q Consensus 244 ~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~s 323 (343)
.++.+++.++.....|+++.|++++++.++ ++.++....++++++|||+|.|..++|++||.|++.+++.++.|
T Consensus 219 ~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~------~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~is 292 (311)
T COG0679 219 LKGSKPPIILIALSLKLLLAPLVALLVAKL------LGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLS 292 (311)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHH
Confidence 455556677777777999999999998763 45677778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019313 324 YAVAAFALTLWITFYIW 340 (343)
Q Consensus 324 tllsivTipl~~~~~l~ 340 (343)
|++|++|+|.|..++.+
T Consensus 293 t~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 293 TLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999888764
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=98.98 E-value=2.7e-09 Score=101.20 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=93.1
Q ss_pred hHHHHHHHhhhcccccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHH
Q 019313 227 IPAMTLVIGANLLSGLKRSGV-GVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTI 305 (343)
Q Consensus 227 vPl~ll~lG~~La~~~~~~~~-~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~l 305 (343)
..+.|+.+|.++.....++.. +++......+.|++++|++++++.. +++.|+.....+++.+|+|+|.++.++
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~------~~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAK------VFKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------HhCCCHHHHHHHHheeeCCCchHHHHH
Confidence 678899999999874332222 3457778888999999999998876 356789999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 306 IQLFETSESECSVILLWTYAVAAFALTLWITFYIW 340 (343)
Q Consensus 306 a~~y~~~~~~~s~~~~~stllsivTipl~~~~~l~ 340 (343)
+++||+|.+.++..+..+|++|++|+|+|+.++..
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988754
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.24 E-value=9.2e-06 Score=72.20 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=82.2
Q ss_pred hHHHHHHHhhhcccccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHH
Q 019313 227 IPAMTLVIGANLLSGLKRSGV-GVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTI 305 (343)
Q Consensus 227 vPl~ll~lG~~La~~~~~~~~-~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~l 305 (343)
+-+.|+..|.++.-..-++.. +++.+....+..++++|++++++.+. +++.++....-+++.+++|.+..+..+
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~-----~~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWL-----LLPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-H-----HTT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 345677788877763222221 34677778899999999999999832 367888899999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 306 IQLFETSESECSVILLWTYAVAAFALTLWITFYIW 340 (343)
Q Consensus 306 a~~y~~~~~~~s~~~~~stllsivTipl~~~~~l~ 340 (343)
+...|+|.........++++++++++|++..++..
T Consensus 79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988753
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.12 E-value=7.2e-05 Score=72.39 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHH------HHHHHhhhcccccccCCC-CchHHHHH
Q 019313 183 APSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPA------MTLVIGANLLSGLKRSGV-GVSLIMGI 255 (343)
Q Consensus 183 nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl------~ll~lG~~La~~~~~~~~-~~~~i~~~ 255 (343)
...+.++++|++++..-| . ....... . .+.....|+ .|+.+|.++...+.++.+ ++|.+...
T Consensus 10 ~~~~~~~i~~~~~g~~~P-------~--~~~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~ 78 (328)
T TIGR00832 10 LWIFLAIAAGVGLGVLFP-------S--VFQALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILS 78 (328)
T ss_pred HHHHHHHHHHHHHHHhcc-------c--cHHHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHH
Confidence 455677777888775322 1 1122211 1 223455553 455656666553222222 35788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 019313 256 IAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 335 (343)
Q Consensus 256 ~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~ 335 (343)
.+.-++++|++++++.+. +++.+|.+..=+++.+|+|.+..+..++...++|....-....++++++++++|.++
T Consensus 79 ~~~qfvi~Plla~~l~~l-----~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 79 LFINWIIGPFLMFLLAWL-----FLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLA 153 (328)
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 246677788889999999999999999999999999888888999999999999988
Q ss_pred HHHH
Q 019313 336 TFYI 339 (343)
Q Consensus 336 ~~~l 339 (343)
.++.
T Consensus 154 ~ll~ 157 (328)
T TIGR00832 154 WLLL 157 (328)
T ss_pred HHHH
Confidence 7765
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.00 E-value=5.2e-05 Score=72.35 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=90.5
Q ss_pred CchhHHHHHHHhhhcccccccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHH
Q 019313 224 EAAIPAMTLVIGANLLSGLKRS-GVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAV 302 (343)
Q Consensus 224 ~~~vPl~ll~lG~~La~~~~~~-~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~ 302 (343)
....-+.|+..|.+|....... ..+++......+.-++++|++++++.+ +++.||....=+++..+.|.++.+
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~------~~~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAK------LFPLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH------HcCCCHHHHHhHHheeeCCCchhH
Confidence 3445566777777777632222 224678888999999999999999987 466788888888999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 303 GTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 339 (343)
Q Consensus 303 ~~la~~y~~~~~~~s~~~~~stllsivTipl~~~~~l 339 (343)
..++..+++|...+-.....||++++++.|+++.++.
T Consensus 115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888888999999999999998864
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.39 E-value=0.0024 Score=61.39 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=88.5
Q ss_pred HhcCchhHHHHHHHhhhcccccccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchH
Q 019313 221 LVGEAAIPAMTLVIGANLLSGLKRS-GVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPA 299 (343)
Q Consensus 221 ~lg~~~vPl~ll~lG~~La~~~~~~-~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A 299 (343)
......+.+..++-|.++......+ ..++|........-+++.|++++++...... + .++.+..=+++..|+|+.
T Consensus 31 ~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtT 106 (313)
T PF13593_consen 31 YVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPA--F--LPPELALGLLILACLPTT 106 (313)
T ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCch
Confidence 3444458888889999888732222 2245677777888899999999988774321 1 356688888999999999
Q ss_pred HHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 300 LAV-GTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 339 (343)
Q Consensus 300 ~~~-~~la~~y~~~~~~~s~~~~~stllsivTipl~~~~~l 339 (343)
+.+ ..+++..|+|+..+--....+.++++++.|+|+.+++
T Consensus 107 v~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 107 VSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 775 5689999999877777778999999999999998876
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.23 Score=47.84 Aligned_cols=138 Identities=16% Similarity=0.116 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHH--HhcCchhHHHHHHHhhhccc----ccc----cCCCCchHHHH
Q 019313 185 STIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAA--LVGEAAIPAMTLVIGANLLS----GLK----RSGVGVSLIMG 254 (343)
Q Consensus 185 ~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~--~lg~~~vPl~ll~lG~~La~----~~~----~~~~~~~~i~~ 254 (343)
.+++.++|+.++-. .| .+.+.++ ..++..+|++..++=+ ++. .+- +-.-++|.+..
T Consensus 20 v~l~i~~Gi~lG~~-----------~p--~~~~~l~~~~~~~~sipiai~L~~M-mYP~m~ki~~~~~~~v~k~~k~L~l 85 (342)
T COG0798 20 VFLAIAIGILLGVH-----------FP--GLAQLLGKLEFGGVSIPIAIGLILM-MYPPMLKIDFEELKNVFKDPKPLIL 85 (342)
T ss_pred HHHHHHHHHHHHhc-----------cc--chhhhcccceeCceehhHHHHHHHH-HhHHHhcCCHHHHHHHHhcchHHHH
Confidence 67888888887642 22 1335555 6778888887654432 222 010 00112477888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Q 019313 255 IIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLW 334 (343)
Q Consensus 255 ~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~ 334 (343)
..+.-.++-|++++.+++++ +++.|-...=+++....|.-.++.+-++.-++|.+.++..+.+..++.++..|.+
T Consensus 86 sL~~Nwii~P~lm~~la~~f-----l~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 86 SLFVNWIIGPLLMFALAWFF-----LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999873 5667777778888888899999899999999999999999999999999999999
Q ss_pred HHHHHHh
Q 019313 335 ITFYIWL 341 (343)
Q Consensus 335 ~~~~l~~ 341 (343)
..+++..
T Consensus 161 ~~~~l~v 167 (342)
T COG0798 161 GKFFLGV 167 (342)
T ss_pred HHHHHhh
Confidence 8888764
No 12
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.45 E-value=0.35 Score=45.90 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcchHHHHHHHHhhhcCCCCCCChhhHhhhhHHHHHHHHHHhhh
Q 019313 5 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 84 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~~~~fg~~~~~~~~g~~Yv~iy~~v~~l 84 (343)
.++..++++.+||..+|++|.++++|+.....++.+|++ +.+++.++. |++ + ...-+..|...|++.+.+
T Consensus 201 ~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~~~~~~~~ 270 (286)
T TIGR00841 201 GILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLIYALFQLA 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999998888889999999998 777776664 442 2 222355677777777766
Q ss_pred hhhh
Q 019313 85 YIWT 88 (343)
Q Consensus 85 l~wt 88 (343)
+-+-
T Consensus 271 ~a~~ 274 (286)
T TIGR00841 271 FALL 274 (286)
T ss_pred HHHH
Confidence 5543
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=81.86 E-value=6.1 Score=38.12 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcc-hHHHHH
Q 019313 3 VNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLII 49 (343)
Q Consensus 3 ~~~~l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~-~lPl~l 49 (343)
+..++-.++++.+||..+|.+|.++++|+....+..-+|++ ..|++-
T Consensus 227 ~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~ 274 (319)
T COG0385 227 VAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAA 274 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHH
Confidence 34566778899999999999999999999999999999987 455544
No 14
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=77.43 E-value=31 Score=31.40 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=75.0
Q ss_pred hhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHH
Q 019313 179 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 258 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~ 258 (343)
+.++||.+++.++=+.+-. -.+.|.+--.+.-+.+...--|- .+.++.-|++..+.-+-+++.+...++.
T Consensus 17 ~~~l~P~l~a~~~ii~~L~---------~~~i~y~~Y~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~ 86 (215)
T PF04172_consen 17 SPFLNPLLIAIVLIIAFLL---------LTGIPYEDYMQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLV 86 (215)
T ss_pred CCcccHHHHHHHHHHHHHH---------HHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467999998877655422 23455533334445444444443 5677778887222111123444444444
Q ss_pred HHHHHHHHHHHHHHHHHHcCccCCChHH-HHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 259 RYILLPLLGIVIVKAAYRFGFIGSDSLY-QFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWIT 336 (343)
Q Consensus 259 RLii~P~i~~~~~~~~~~~~~l~~d~~~-~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~~ 336 (343)
=-++.-.....+++ +++.|+.. .-.+-=...+|.|+ -++++.|+++...+..+..|=++..+.-|.++-
T Consensus 87 g~~~~~~~~~~l~~------~lgl~~~~~~Sl~pkSVTtpiAi---~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk 156 (215)
T PF04172_consen 87 GSLVSIFSAVLLAR------LLGLSPEIILSLAPKSVTTPIAI---EISEQIGGIPSLTAVFVVITGILGAVLGPPLLK 156 (215)
T ss_pred HHHHHHHHHHHHHH------HHCcCHHHHHHHHHHHhhHHHHH---HHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHh
Confidence 33333333333333 23444433 33333334566666 467889999988888888776666555555443
No 15
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=76.32 E-value=2.8 Score=41.27 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=68.8
Q ss_pred HHHHHHhhhcccccccCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHH
Q 019313 229 AMTLVIGANLLSGLKRSGVG-VSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQ 307 (343)
Q Consensus 229 l~ll~lG~~La~~~~~~~~~-~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~ 307 (343)
..|+.+|.++.-.......+ ...+....+.+++++|+.++.+...+ .+|.+. ....++..|.+++.-......
T Consensus 121 ~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~----~lP~~~--~ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 121 SNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVL----LLPAAL--AAGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred HHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHh----hCCccc--cceeEEEEeccCCcchhhhee
Confidence 45667777776532222222 24555666779999999998865321 244332 255667777777777677766
Q ss_pred Hc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 308 LF-ETSESECSVILLWTYAVAAFALTLWITFYIW 340 (343)
Q Consensus 308 ~y-~~~~~~~s~~~~~stllsivTipl~~~~~l~ 340 (343)
.+ ++|....--....+|+.+++.+|+|...+..
T Consensus 195 ~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~ 228 (371)
T KOG2718|consen 195 KRLPGDVTLSILMTTISTVLAVILTPLLSILLGR 228 (371)
T ss_pred ecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 66 5554444444568899999999999887743
No 16
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=74.15 E-value=3.1 Score=40.26 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcc-hHHHHH
Q 019313 6 LLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLII 49 (343)
Q Consensus 6 ~l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~-~lPl~l 49 (343)
++...+++.+||.++|.+|.++++|+...++++.+|++ .++++.
T Consensus 253 ~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 253 LIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 46678899999999999999999999999999999986 465544
No 17
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=72.29 E-value=96 Score=29.91 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 019313 8 SFLIGSALAWILIKITRTP 26 (343)
Q Consensus 8 ~~~v~~l~g~~~~~l~~~~ 26 (343)
=++++.++|+++.|+++.+
T Consensus 81 K~~~~~~~g~~~~~~~g~~ 99 (312)
T PRK12460 81 KLGVAIVIGLLVGKFFGAE 99 (312)
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 4678899999999988854
No 18
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=70.62 E-value=56 Score=27.90 Aligned_cols=44 Identities=5% Similarity=0.061 Sum_probs=26.6
Q ss_pred HhccCchHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 019313 292 LQYAVPPALA-VGTIIQLFETSESECSVILLWTYAVAAFALTLWI 335 (343)
Q Consensus 292 l~~a~P~A~~-~~~la~~y~~~~~~~s~~~~~stllsivTipl~~ 335 (343)
+.+++|-+.. ...+|+++|.|...++..=..=-++-++++|.+.
T Consensus 109 ~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~ 153 (156)
T TIGR03082 109 FLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLA 153 (156)
T ss_pred HHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678998887 5667789999986554332222223334555544
No 19
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=70.60 E-value=14 Score=33.58 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHH-HcCCChHHHHHHHHHHHHH
Q 019313 248 GVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQ-LFETSESECSVILLWTYAV 326 (343)
Q Consensus 248 ~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~-~y~~~~~~~s~~~~~stll 326 (343)
+++--..+.+.-|.+.|.+.++++..... -|.|..+..=+.+..|||+-..+.++-. .-|+++ ++..+.|-..
T Consensus 82 ~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~---~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa---~A~~v~S~f~ 155 (287)
T KOG4821|consen 82 NWRLHLFILILSLLITPSIVYLFCCAVKA---AKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNA---SALCVCSVFI 155 (287)
T ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHhC---cchhHHHHhhheeeeecCCccccceeeeeccCccH---HHHHHHHHHH
Confidence 34555566677799999999988764311 1246667777888999999988766554 445444 5556666666
Q ss_pred HHHHHHHHH
Q 019313 327 AAFALTLWI 335 (343)
Q Consensus 327 sivTipl~~ 335 (343)
++++.|...
T Consensus 156 g~L~~~~i~ 164 (287)
T KOG4821|consen 156 GNLLGAFIT 164 (287)
T ss_pred HHHhhhHHH
Confidence 666665443
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=69.82 E-value=1.3e+02 Score=31.69 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHh
Q 019313 214 VLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQ 293 (343)
Q Consensus 214 ~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~ 293 (343)
-+.+.++-..+.-.|+=-+.+|+++.-..-.. .+..+...++..++.=++.++...+. .|+ +...-...-+.+.
T Consensus 261 ~le~~i~pf~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~~~~~K~~~~~~~~~~---~g~-~~~~a~~~gl~L~ 334 (621)
T PRK03562 261 ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLGFLAIKIAMLWLLARP---LGV-PRKQRRWFAVLLG 334 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHhHHHHHHHHHh
Confidence 34445555566777888888888776411111 11223333444444445555544432 222 2222233444555
Q ss_pred ccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 294 YAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIW 340 (343)
Q Consensus 294 ~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~~~~l~ 340 (343)
.....+.....++...|.=+++....+....++|.+..|++..++-+
T Consensus 335 ~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~ 381 (621)
T PRK03562 335 QGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDR 381 (621)
T ss_pred ccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 56777777777787777766666666667788898888987766533
No 21
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=69.76 E-value=49 Score=31.87 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=53.2
Q ss_pred HHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChH------HHH
Q 019313 215 LDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSL------YQF 288 (343)
Q Consensus 215 i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~------~~~ 288 (343)
+++++-.=.+.-+-+-+++.|+++.-+.. ....|+-...++.|+++-=++++++.++ ++.|.+ -.-
T Consensus 39 fT~al~~G~~~iig~~l~~~Ga~I~~k~~--~~~lkkg~~ll~~K~~~~~~lgl~~~~~------fg~~Gi~~g~f~GlS 110 (314)
T PF03812_consen 39 FTTALFTGANPIIGVFLFCMGAQIDLKSA--GKVLKKGGVLLLVKFIIGALLGLLVGKF------FGPEGIQSGFFLGLS 110 (314)
T ss_pred HHHHHHcchHHHHHHHHHHhccccchhhh--hHHHHhhhHHHHHHHHHHHHHHHHHHHH------cCccccccccccchH
Confidence 44444321223334557788888875221 1123455667889999998888888774 444432 233
Q ss_pred HHHHhccCchHHHHHHHH--HHcCCChHH
Q 019313 289 ILLLQYAVPPALAVGTII--QLFETSESE 315 (343)
Q Consensus 289 v~~l~~a~P~A~~~~~la--~~y~~~~~~ 315 (343)
.+-+.+||-.......++ ++||-++|.
T Consensus 111 ~LAiiaa~~~~NggLY~aL~~~yGd~~D~ 139 (314)
T PF03812_consen 111 ALAIIAAMTNSNGGLYLALMGQYGDEEDV 139 (314)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHHh
Confidence 455555665555555444 788655544
No 22
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.66 E-value=1.4e+02 Score=31.35 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhc
Q 019313 215 LDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQY 294 (343)
Q Consensus 215 i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~ 294 (343)
+.+.++...+.-.|+=-+.+|+++.-..-.. .+..+...++..+++=++.+++.... +|+ +...-...-+.+..
T Consensus 259 l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~~~~~---~g~-~~~~al~~g~~L~~ 332 (601)
T PRK03659 259 LEIAIEPFKGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYLLARL---YGL-RSSERMQFAGVLSQ 332 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHHHHHHHHHHHhc
Confidence 3445555667788888888898776421111 12233334444455545555544432 221 21112233344556
Q ss_pred cCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 295 AVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 339 (343)
Q Consensus 295 a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~~~~l 339 (343)
...-+.....++..+|.=++.....+....++|.+..|++..++-
T Consensus 333 ~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~ 377 (601)
T PRK03659 333 GGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLID 377 (601)
T ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 667777777778788776666666667888888888888776543
No 23
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=67.38 E-value=20 Score=34.48 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcchHHHHHHHHhh
Q 019313 7 LSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVC 54 (343)
Q Consensus 7 l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~ 54 (343)
....+...++|..+|.+|.++++|....+|+ -+.+..+++++...++
T Consensus 234 ~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~g-s~Ksl~~gvpl~~~lf 280 (313)
T PF13593_consen 234 LLLLVVLVLGWLAARLLGFSRPDRIAVLFCG-SQKSLALGVPLASILF 280 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCChhhEEEEEEEc-CcCcchhHHHHHHHHc
Confidence 4455667889999999999999988877644 4888888888888874
No 24
>PRK10711 hypothetical protein; Provisional
Probab=66.64 E-value=1.1e+02 Score=28.27 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=77.4
Q ss_pred hhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHH
Q 019313 179 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 258 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~ 258 (343)
+.++||.+++.++-+.+-. -.+.|.+--.+.-+.+...--| +.+.++.-|++..+.-+-+++.+...+++
T Consensus 28 ~~~l~Pll~s~~~ii~~L~---------~~~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~v 97 (231)
T PRK10711 28 FPLLNPLLVAMVVIIPFLL---------LTGIPYEHYFKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFI 97 (231)
T ss_pred CCcccHHHHHHHHHHHHHH---------HhCCCHHHHHhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4457999998877666522 2355553334444544444444 23456667777222222234455555555
Q ss_pred HHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHH-hccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 019313 259 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL-QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 335 (343)
Q Consensus 259 RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l-~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~ 335 (343)
=-++--...+.+++ +++.|+.....+.- -..+|.|+ -++++.|+++...+..+..+=++..+--|.++
T Consensus 98 G~~v~i~s~~~l~~------~lg~~~~~~~Sl~pkSVTtPIAm---~is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 98 GSVVAMVTGTAVAL------WMGATPEIAASILPKSVTTPIAM---AVGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHHH------HHCcCHHHHHHHhhhhhhHHHHH---HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444 34555544443333 34556666 46789999998888888877666666555544
No 25
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=65.69 E-value=77 Score=30.43 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=39.1
Q ss_pred hhchHHHHHHHHHHHHh-hccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhccc
Q 019313 181 IFAPSTIAAIIGFVIGT-ISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS 240 (343)
Q Consensus 181 l~nP~~ia~i~glii~~-~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~ 240 (343)
-.+++++|+++|++++= + + +.| +.....++...+-....+.+.+|.++.-
T Consensus 25 ~l~~~~~AillG~~i~n~~-------~--~~~-~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~ 75 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNLF-------F--GLP-ARFKPGIKFSSKKLLRLGIVLLGFRLSF 75 (305)
T ss_pred CccHHHHHHHHHHHHhhhc-------c--CCc-HHHHhHHHHHHHHHHHHHHHHHCccccH
Confidence 36899999999999862 2 1 122 5566778888888999999999999876
No 26
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=64.22 E-value=1.1e+02 Score=28.27 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=71.8
Q ss_pred hhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHHH
Q 019313 180 MIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIR 259 (343)
Q Consensus 180 ~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~R 259 (343)
.+.||.+++.++.+.+-.. .+.|.+-=++.-+.+-..--| +.+.++.=|++..+.-+-.++.+...+++=
T Consensus 31 ~~l~PlLv~~~~li~~L~~---------~~i~Y~~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vG 100 (230)
T COG1346 31 PFLNPLLVATVLLIAFLLL---------FGISYEDYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVG 100 (230)
T ss_pred cccchHHHHHHHHHHHHHH---------cCCCHHHHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999998887776332 334442222323333333334 555666777763222222344444444333
Q ss_pred HHHHHHHHHHHHHHHHHcCccCCChHHHHHHHH-hccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 260 YILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL-QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWIT 336 (343)
Q Consensus 260 Lii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l-~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~~ 336 (343)
-++-=...+.+.+ ++..|+.....++= ...+|.|+ -++++-|+-++..+-.+..+=++.-+.-|..+-
T Consensus 101 s~~ai~s~~llak------~~g~~~~~~~Sl~PkSvTTpiAm---~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk 169 (230)
T COG1346 101 SVVAIISGVLLAK------LFGLSPELILSLLPKSVTTPIAM---EVSESIGGIPALTAVFVILTGILGAVLGPLLLK 169 (230)
T ss_pred HHHHHHHHHHHHH------HhCCCHHHHHHhcccccccHHHH---HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222333222 34545533333322 23455555 467888888888888777776666665555443
No 27
>COG2855 Predicted membrane protein [Function unknown]
Probab=58.95 E-value=1.1e+02 Score=29.67 Aligned_cols=130 Identities=17% Similarity=0.242 Sum_probs=67.8
Q ss_pred hchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHHHHH
Q 019313 182 FAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYI 261 (343)
Q Consensus 182 ~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~RLi 261 (343)
..|+++|+++|++++..++.++ -....++.-...-...+.+.+|.++.-.. -...+...+. ....=+.
T Consensus 37 l~al~lAIllGi~l~~l~~~~~----------~~~~GI~fs~k~LLr~gIvLlG~~ltl~~-i~~~G~~~v~-~~~~~l~ 104 (334)
T COG2855 37 LSALTLAILLGILLGILPQIPA----------QTSAGITFSSKKLLRLGIVLLGFRLTLSD-IADVGGSGVL-IIAITLS 104 (334)
T ss_pred chHHHHHHHHHHHHhccccchh----------hhccchhhhHHHHHHHHHHHHcceeeHHH-HHHcCccHHH-HHHHHHH
Confidence 4599999999999985543322 22244555556667788899999887621 1122221211 1111111
Q ss_pred HHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHH--HHcCCChHHHHHHHHHHHHHHHHHH
Q 019313 262 LLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTII--QLFETSESECSVILLWTYAVAAFAL 331 (343)
Q Consensus 262 i~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la--~~y~~~~~~~s~~~~~stllsivTi 331 (343)
..+.+...+.+ ++..|+ ..++++..+.-.-=.++++| ..-+.++++.+..+..-++++.+-+
T Consensus 105 ----~t~~~~~~lg~--~lgld~--~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~ 168 (334)
T COG2855 105 ----STFLFAYFLGK--LLGLDK--KLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAM 168 (334)
T ss_pred ----HHHHHHHHHHH--HhCCCH--HHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHH
Confidence 11222222222 456675 55555555554444445555 3456777776555544444443333
No 28
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=51.76 E-value=1.3e+02 Score=29.03 Aligned_cols=104 Identities=10% Similarity=0.125 Sum_probs=49.7
Q ss_pred HHHHHHhhhcccccccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHH-HHHHH
Q 019313 229 AMTLVIGANLLSGLKRSGVGV-SLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALA-VGTII 306 (343)
Q Consensus 229 l~ll~lG~~La~~~~~~~~~~-~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~-~~~la 306 (343)
.+..++|..+......+.+.. .........=.+..-++.....+.+++.+.+ |. .--+.+++|-+.+ ...+|
T Consensus 29 ~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~--d~----~TA~~~~~PGg~s~m~~la 102 (318)
T PF05145_consen 29 AGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL--DR----ATAFFASMPGGLSEMVALA 102 (318)
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--Ch----hHHHHHcCCccHHHHHHHH
Confidence 445567776666332221111 1222222222333344444444445554432 32 2334578888877 66788
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 307 QLFETSESECSVILLWTYAVAAFALTLWITFY 338 (343)
Q Consensus 307 ~~y~~~~~~~s~~~~~stllsivTipl~~~~~ 338 (343)
+++|.|.+.++-.=..=-++-++++|+...+.
T Consensus 103 ~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~ 134 (318)
T PF05145_consen 103 EEYGADTRRVALVQSLRLLLVVLLVPFIASLL 134 (318)
T ss_pred HHcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999976543221111123334455554433
No 29
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=43.66 E-value=2.1e+02 Score=28.07 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=42.2
Q ss_pred HHHHHhhhcccccccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHH-HHHHHH
Q 019313 230 MTLVIGANLLSGLKRSGVGV-SLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALA-VGTIIQ 307 (343)
Q Consensus 230 ~ll~lG~~La~~~~~~~~~~-~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~-~~~la~ 307 (343)
+..++|.+.+.....+.+.. +..+...++=.++.=++.+...+.+.+++-+| +.- -+..++|=+.. ...+||
T Consensus 63 ~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~--~~T----a~~gs~PGgas~m~~iA~ 136 (352)
T COG3180 63 GQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILP--GNT----AFLGSSPGGASAMVSIAQ 136 (352)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCC--cch----hhHhcCCchHHHHHHHHH
Confidence 44567777776433332211 12122222223333444555555556666333 211 12367777665 667899
Q ss_pred HcCCChHHHH
Q 019313 308 LFETSESECS 317 (343)
Q Consensus 308 ~y~~~~~~~s 317 (343)
.||.|...+|
T Consensus 137 d~gAd~~~VA 146 (352)
T COG3180 137 DYGADLRLVA 146 (352)
T ss_pred HhCCChhHHH
Confidence 9999986554
No 30
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=40.96 E-value=1.1e+02 Score=29.60 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=46.6
Q ss_pred hHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHH-HHHHHHhccCchHHHHHHH
Q 019313 227 IPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLY-QFILLLQYAVPPALAVGTI 305 (343)
Q Consensus 227 vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~-~~v~~l~~a~P~A~~~~~l 305 (343)
+-+-+++.|+++.-+.... ..++-....+.|.++-=++++.+.++ ++.|+.+ .-.+-+.+||=-..+...+
T Consensus 51 l~~~~~~~Ga~I~~k~~~~--~l~kg~~l~~~K~~~~~~~g~~~~~~------~g~~g~~Gls~laiiaa~~~~Ng~ly~ 122 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQ--ALLKGGVLTITKLGVAIVIGLLVGKF------FGAEGIFGLSGLAIVAAMSNSNGGLYA 122 (312)
T ss_pred HHHHHHHhcCeeeccccch--hhhhhhhhhhHHHHHHHHHHHHHHHH------cCcccccchHHHHHHHHHhcCcHHHHH
Confidence 3455788899887522221 12344456678999888888887764 4444432 2334444555444444443
Q ss_pred --HHHcCCChHH
Q 019313 306 --IQLFETSESE 315 (343)
Q Consensus 306 --a~~y~~~~~~ 315 (343)
+++||.++|.
T Consensus 123 al~~~yG~~~d~ 134 (312)
T PRK12460 123 ALMGEFGDERDV 134 (312)
T ss_pred HHHHHcCCHhhh
Confidence 5889766543
No 31
>COG3329 Predicted permease [General function prediction only]
Probab=40.04 E-value=3.6e+02 Score=26.17 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=33.1
Q ss_pred hhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccc
Q 019313 179 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSG 241 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~ 241 (343)
..+.||.++..+.|++++++--.|. . .++.+..+-+=+...-+=|+.+|+.-.++
T Consensus 213 Esflnpal~lllggl~iGlitGe~g------~--~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 213 ESFLNPALVLLLGGLAIGLITGEQG------E--SVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred HHHcCchHHHHHHHHHHhheeccCc------h--hhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 4568999999999999997642221 1 22222222222334445677888887763
No 32
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=39.90 E-value=3e+02 Score=25.27 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=69.8
Q ss_pred hhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHH
Q 019313 179 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 258 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~ 258 (343)
+.++||.+++.++-+.+-. -.+.|.+--.+.-+.+...--| +.+.++.-|++..+.-+-+++.+...+++
T Consensus 27 ~~~lnPvl~~~~~ii~~L~---------~~~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~ 96 (226)
T TIGR00659 27 RPYLNPLLLTPLVLVGILL---------LVGIPYESYMLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAV 96 (226)
T ss_pred CccccHHHHHHHHHHHHHH---------HhCCCHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4457999999886666532 1344542223333333332222 23455566676222111123344443333
Q ss_pred HHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHH-hccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 019313 259 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL-QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 335 (343)
Q Consensus 259 RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l-~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~ 335 (343)
=-++.-...+.+.+ +++.|+.....+.- ...+|.|+ -++++.|+++...+..+..|=++..+.-|..+
T Consensus 97 G~~~~~~s~~~la~------~lg~~~~i~~Sl~pkSvTtpiAm---~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll 165 (226)
T TIGR00659 97 GSVIAIISGTLLAL------LLGLGPEIIASLLPKSVTTPIAM---HVSEMIGGIPAVTAVFVILTGLLGTVFGPMVL 165 (226)
T ss_pred HHHHHHHHHHHHHH------HHCcCHHHHHHhhhHHhhHHHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 23445433333322 23445555 46789999998888888877666655555443
No 33
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=38.61 E-value=3.2e+02 Score=25.20 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=72.9
Q ss_pred hhhhchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCCCchHHHHHHHH
Q 019313 179 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 258 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~~~~~i~~~~~~ 258 (343)
+.++||.+++.++-+.+-. -.+.|.+--.+.-+.+-..--| +.+.++.-|++..+.-+-+++.+...+++
T Consensus 33 ~~~lnPll~s~~~ii~~L~---------~~~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~v 102 (232)
T PRK04288 33 FFLFTPLFVAMVLGIAFLK---------LTGISYEEYNIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVV 102 (232)
T ss_pred CcchhHHHHHHHHHHHHHH---------HhCCCHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3447999988877666532 2345542223333333222222 22355566676222111123444444444
Q ss_pred HHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHH-hccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 019313 259 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL-QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 335 (343)
Q Consensus 259 RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l-~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~ 335 (343)
=-++--...+.+++ +++.|+.....+.= -..+|.|+ -++++.|+++...+..+..+=++..+.-|.++
T Consensus 103 G~~~~i~s~~~la~------~lgl~~~~~~Sl~pKSVTtPIAm---~is~~iGG~psLtA~~ViitGi~Gai~g~~ll 171 (232)
T PRK04288 103 GSVCSVLIIYLVAK------LIQLDNAVMASMLPQAATTAIAL---PVSAGIGGIKEITSFAVIFNAVIIYALGAKFL 171 (232)
T ss_pred HHHHHHHHHHHHHH------HHCcCHHHHHHHhhHhhhHHHHH---HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443 34556544333332 33456665 47789999999888888887776666555543
No 34
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=31.88 E-value=3.2e+02 Score=28.86 Aligned_cols=53 Identities=23% Similarity=0.137 Sum_probs=34.7
Q ss_pred hhhhhchHHHHHHH-HHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhccc
Q 019313 178 LKMIFAPSTIAAII-GFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS 240 (343)
Q Consensus 178 ~k~l~nP~~ia~i~-glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~ 240 (343)
.|++.-|++++-++ |++++ |.. ++. .+ -.+.++.+++..+.+-|+.+|..+.-
T Consensus 24 ~~rl~lp~vlgyilaGillG--P~~----lg~-i~---~~~~i~~laelGvv~LlF~iGLEl~~ 77 (621)
T PRK03562 24 AVRLGLGSVLGYLIAGCIIG--PWG----LRL-VT---DVESILHFAEFGVVLMLFVIGLELDP 77 (621)
T ss_pred HHHhCCChHHHHHHHHHHhC--ccc----ccC-CC---CHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 36677787777654 66653 211 111 01 02457889999999999999999875
No 35
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=30.78 E-value=5.4e+02 Score=25.45 Aligned_cols=137 Identities=14% Similarity=0.231 Sum_probs=70.4
Q ss_pred hhhchHHHHHHHHHHHHhhccchhhhccCCcch-hHHHHHHHHhcCchhHHHH--HHHhhhcccccccCCCCchHHHHH-
Q 019313 180 MIFAPSTIAAIIGFVIGTISPFRKVIVGESAPL-RVLDSSAALVGEAAIPAMT--LVIGANLLSGLKRSGVGVSLIMGI- 255 (343)
Q Consensus 180 ~l~nP~~ia~i~glii~~~p~l~~l~~~~~~pl-~~i~~~l~~lg~~~vPl~l--l~lG~~La~~~~~~~~~~~~i~~~- 255 (343)
+..+|+++..+++++++-.+. + +.|. ..+.+.+ -+-.+|+++ +.+.+.+.+..+. ..|.+...
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgl-----i--~~p~~s~~y~~v---~~~~vPlai~LlLl~~Dlr~i~~~---g~~~l~~F~ 89 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGL-----I--DSPASSPVYDFV---WTYLVPLAIPLLLLSADLRRILRL---GGRLLLAFL 89 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCC-----c--CCCCcchHHHHH---HHHHHHHHHHHHHHHccHHHHHHh---hHHHHHHHH
Confidence 557999999999999887653 2 1122 3333333 334556554 3455555552221 22222211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Q 019313 256 -IAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLW 334 (343)
Q Consensus 256 -~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~ 334 (343)
..+=.++-=.+++.+.. +.+.+|..-..-++.-+=.==..|..-+++.++.+++..+..+..-++.+-+-+.+.
T Consensus 90 ~~~~g~viG~~va~~l~~-----~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l 164 (378)
T PF05684_consen 90 IGAVGTVIGAVVAFLLFG-----GFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFL 164 (378)
T ss_pred HHHHHHHHHHHHHHHHHh-----hcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111112222211 112334322223333333444678888899999999888888877777665544443
No 36
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=29.75 E-value=5.2e+02 Score=25.15 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=35.5
Q ss_pred hchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhccc
Q 019313 182 FAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS 240 (343)
Q Consensus 182 ~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~ 240 (343)
.+++++|+++|++++-. +. .+.| ......++...+--.-++.+.+|.++.-
T Consensus 31 l~~~~~AillG~~l~n~------~~-~~~~-~~~~~Gi~f~~k~lLr~gIVLlG~~l~~ 81 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT------IY-PQRD-EEKKRGVLFAKPFLLRIGITLYGFRLTF 81 (335)
T ss_pred CcHHHHHHHHHHHHhcc------cc-ccch-hhccchHHHHHHHHHHHHHHHHCccccH
Confidence 68899999999987632 10 1112 3334566777777788899999988876
No 37
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=27.52 E-value=5.7e+02 Score=24.72 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHHhcCchhHHHHHHHhhhccccc-ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChH----HHHH
Q 019313 215 LDSSAALVGEAAIPAMTLVIGANLLSGL-KRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSL----YQFI 289 (343)
Q Consensus 215 i~~~l~~lg~~~vPl~ll~lG~~La~~~-~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~----~~~v 289 (343)
+.+.++--....+|.--+.+|+.+.-.. .+.. ...++..+.+ .++.-...+..-+.. ...++. ...+
T Consensus 191 ~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aG--l~GIlLgv~~-~~vtg~~~~~~dr~i-----~~~~g~aG~A~sst 262 (314)
T PF03812_consen 191 FRKFLAPGVPILIPFFGFALGAGINLSNIIKAG--LSGILLGVIV-VVVTGIPLYLADRLI-----LKGNGVAGAAISST 262 (314)
T ss_pred HHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhC--cchHHHHHHH-HHHHhHHHHHHHHHH-----cCCCCceeehHHhh
Confidence 4455666667778888888887766411 1111 1122222222 111111222222211 112221 1222
Q ss_pred HHHhccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 290 LLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIW 340 (343)
Q Consensus 290 ~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~~~~l~ 340 (343)
.=-..++|.++- .....|..-.+.+..-+..+.+++.+..|+...++.+
T Consensus 263 AGnavatPaaiA--~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 263 AGNAVATPAAIA--AADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred hhhhhhhhHHHH--HhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555442 2223343333444555566677777777877777654
No 38
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.50 E-value=1.6e+02 Score=28.18 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=33.5
Q ss_pred HHHHHHHhcCchhHHHHH--HHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 019313 215 LDSSAALVGEAAIPAMTL--VIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGF 279 (343)
Q Consensus 215 i~~~l~~lg~~~vPl~ll--~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~ 279 (343)
.+..++.++....|+.++ +.|+|+...|... ++..+..+ ++++=+++.++.+.+++.+|
T Consensus 263 ~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~---~~~gy~~~---l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 263 RTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGG---WPFGFSIF---CLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcC---CcchHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 445677788888888888 8888887644321 22222222 22333444444445555555
No 39
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=25.23 E-value=1.3e+02 Score=28.91 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCh-----HH-HHHHHHhccCchHHH
Q 019313 228 PAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDS-----LY-QFILLLQYAVPPALA 301 (343)
Q Consensus 228 Pl~ll~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~-----~~-~~v~~l~~a~P~A~~ 301 (343)
-+-+++.|+++.-+..... .++-....+.|.++-=++++.+.++ ++.|+ .+ .-.+-+.+||=-..+
T Consensus 52 ~~~l~~~Ga~I~~k~~g~~--l~kg~~l~~~K~~i~~~~g~~~~~~------~g~~Gi~~g~~~GlS~LAiiaA~~nsNg 123 (314)
T TIGR00793 52 AVWFFCMGASIDLSATGTV--LRKSGTLVVTKIAVAWVVAAIASRI------IPEDGVEVGFFAGLSTLALVAAMDMTNG 123 (314)
T ss_pred HHHHHHhCCeeeecccchh--hhhcceeeeHHHHHHHHHHHHHHHH------cCcCCccccceeccHHHHHHHHHhCCcH
Confidence 3457888988875222211 2233345677988888888877764 34343 21 233444455544444
Q ss_pred HHH--HHHHcCCChHH
Q 019313 302 VGT--IIQLFETSESE 315 (343)
Q Consensus 302 ~~~--la~~y~~~~~~ 315 (343)
... ++++||.++|.
T Consensus 124 gLY~aL~~qyGd~~D~ 139 (314)
T TIGR00793 124 GLYASIMQQYGTKEEA 139 (314)
T ss_pred HHHHHHHHHcCCHhhh
Confidence 433 35889666543
No 40
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=24.74 E-value=85 Score=20.61 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=16.3
Q ss_pred hhhhhchHHHHHHHHHHHHh
Q 019313 178 LKMIFAPSTIAAIIGFVIGT 197 (343)
Q Consensus 178 ~k~l~nP~~ia~i~glii~~ 197 (343)
+..++-|.+++.++|++.++
T Consensus 7 fa~iMVPVvma~ilglIyGl 26 (41)
T PF10766_consen 7 FAVIMVPVVMALILGLIYGL 26 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999764
No 41
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.27 E-value=4.2e+02 Score=22.04 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=29.4
Q ss_pred CChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHH
Q 019313 282 SDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWT 323 (343)
Q Consensus 282 ~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~s 323 (343)
.++.....+.+..+.=.+....++.|.|+.+.+...-...|+
T Consensus 86 ~~~~~~~~l~~l~~~l~ga~ialigQ~y~~~~~~~~~~~~W~ 127 (145)
T PF09925_consen 86 RSPRLAEALLLLGAVLFGALIALIGQIYQTGADPWQLFLLWA 127 (145)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchHHHHHHHH
Confidence 344455555555555578888999999999887777777674
No 42
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.73 E-value=79 Score=26.19 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCC
Q 019313 5 ILLSFLIGSALAWILIKITRTP 26 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l~~~~ 26 (343)
.++.++||+++|+++.|+..-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5788899999999999977543
No 43
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=22.06 E-value=7.4e+02 Score=24.90 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHhhccchhhhcc----CCcch-hHHHHHHHHhcCchhHHHHHHHhhhccc-----------ccccCC
Q 019313 183 APSTIAAIIGFVIGTISPFRKVIVG----ESAPL-RVLDSSAALVGEAAIPAMTLVIGANLLS-----------GLKRSG 246 (343)
Q Consensus 183 nP~~ia~i~glii~~~p~l~~l~~~----~~~pl-~~i~~~l~~lg~~~vPl~ll~lG~~La~-----------~~~~~~ 246 (343)
|-.+-...+|++.....+-|.+.|. ...|| ..+..+.+-++.-+.|-.==.+-++... +.++.+
T Consensus 76 ~~lf~f~pl~~~~h~~~~s~~~vF~lsll~iiPLA~~l~~ateqls~~tg~tvGgllNAtfGnaiElii~ilALk~g~~r 155 (441)
T KOG1397|consen 76 NLLFPFVPLAIIAHWFTWSKGWVFLLSLLGIIPLAERLGFATEQLSAYTGPTVGGLLNATFGNAIELIIYILALKNGKVR 155 (441)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcHHHHHhhhhccHHHHHHHHHHhhcCceE
Confidence 3344466677777666555554442 23577 6677777776666655411111122221 112222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHH---HHHHH
Q 019313 247 VGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSV---ILLWT 323 (343)
Q Consensus 247 ~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~---~~~~s 323 (343)
+-...++...+.-++++|-..+.....-++...+....--....++..|+=......++-..|+.....++. .+-.|
T Consensus 156 iVq~SlLGSILsnlLLvlG~s~~~Ggi~rk~Q~Fn~~~A~v~s~lLl~a~l~~l~P~~l~~~~~~~~~~~~~~~~~l~lS 235 (441)
T KOG1397|consen 156 IVQGSLLGSILSNLLLVLGLSLFCGGIRRKDQRFNIKSAGVNSALLLLAVLGILLPTVLHYTYGGEVHDCSSGGAILPLS 235 (441)
T ss_pred EEehhhHHHHHHHHHHHhhHHHhhcccccceeecccchhhHHHHHHHHHHHHHHHHHHHHHhcCccccccCCccceeeeh
Confidence 233567777788888888777655432233223332222344444555554555555555666554432222 45567
Q ss_pred HHHHHHHHHHHHH
Q 019313 324 YAVAAFALTLWIT 336 (343)
Q Consensus 324 tllsivTipl~~~ 336 (343)
+-.|++-+-.++.
T Consensus 236 r~~SivmliaYi~ 248 (441)
T KOG1397|consen 236 RGCSIVMLIAYIA 248 (441)
T ss_pred hccHHHHHHHHHH
Confidence 7777665544433
No 44
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=21.34 E-value=2.5e+02 Score=26.42 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCchhHHHHH--HHhhhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Q 019313 213 RVLDSSAALVGEAAIPAMTL--VIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFI 280 (343)
Q Consensus 213 ~~i~~~l~~lg~~~vPl~ll--~lG~~La~~~~~~~~~~~~i~~~~~~RLii~P~i~~~~~~~~~~~~~l 280 (343)
.-+++.++.++....|+.++ +.|+|+...|.. +++.-+..+ ++++-+++++..+.+.+.||+
T Consensus 255 N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l---~~~~gy~~~---l~~m~~i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 255 NEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPEL---NWKYGYPAV---LIVMAVIALGPLIYFRRKGWL 318 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccc---cchhHHHHH---HHHHHHHHHHHHHHHHHcCCC
Confidence 45677888888888888888 888887754432 122222222 334445555555556666653
Done!