Query 019313
Match_columns 343
No_of_seqs 158 out of 909
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 98.9 7.7E-09 2.6E-13 98.7 11.7 139 182-339 17-156 (332)
2 3zux_A Transporter, ASBTNM; tr 86.2 0.51 1.7E-05 44.4 3.8 48 5-53 234-281 (332)
3 4ev6_A Magnesium transport pro 8.3 4.7E+02 0.016 23.6 5.5 30 213-242 276-307 (339)
4 2kv5_A FST, putative uncharact 6.7 4.7E+02 0.016 15.6 3.1 22 321-342 4-25 (33)
5 4f4l_A ION transport protein; 6.4 5.7E+02 0.019 19.1 4.3 78 9-94 14-93 (112)
6 1vf5_F Protein PET M; photosyn 4.8 6.6E+02 0.023 15.2 2.9 18 5-22 12-29 (35)
7 2kog_A Vesicle-associated memb 4.6 1.2E+03 0.04 17.8 5.1 21 174-194 89-109 (119)
8 1q90_M Cytochrome B6F complex 4.4 7.5E+02 0.026 15.3 3.2 19 5-23 13-31 (39)
9 2ls4_A High affinity copper up 5.6 2E+02 0.0068 16.3 0.0 17 4-20 4-20 (26)
10 3arc_I Photosystem II reaction 3.6 7.9E+02 0.027 15.1 2.5 25 258-284 4-28 (38)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.90 E-value=7.7e-09 Score=98.73 Aligned_cols=139 Identities=8% Similarity=0.006 Sum_probs=107.9
Q ss_pred hchHHHHHHHHHHHHhhccchhhhccCCcchhHHHHHHHHhcCchhHHHHHHHhhhcccccccCCC-CchHHHHHHHHHH
Q 019313 182 FAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGV-GVSLIMGIIAIRY 260 (343)
Q Consensus 182 ~nP~~ia~i~glii~~~p~l~~l~~~~~~pl~~i~~~l~~lg~~~vPl~ll~lG~~La~~~~~~~~-~~~~i~~~~~~RL 260 (343)
-++..+.++++.+++..-| . . ... ++..-...+.+.|+..|.++.....++.+ +++......+.++
T Consensus 17 ~~~~~l~i~~~~~lg~~~P-------~-~-~~~----~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 17 GKTFSLWAALFAAAAFFAP-------D-T-FKW----AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp HHTHHHHHHHHHHHHHHCG-------G-G-TGG----GGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc-------h-h-hhh----hHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence 3566677777777765422 1 0 011 12222357889999999999874333222 3466777889999
Q ss_pred HHHHHHHHHHHHHHHHcCccCCChHHHHHHHHhccCchHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019313 261 ILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 339 (343)
Q Consensus 261 ii~P~i~~~~~~~~~~~~~l~~d~~~~~v~~l~~a~P~A~~~~~la~~y~~~~~~~s~~~~~stllsivTipl~~~~~l 339 (343)
+++|++++++.+. ++.|+.....+++..|+|++.++.+++..+|+|.+.+......+|+++++++|+|+.++.
T Consensus 84 vi~Pll~~~l~~~------~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 84 AIMPATAWCLSKL------LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHH------TTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998873 577899999999999999999999999999999999999999999999999999998774
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=86.15 E-value=0.51 Score=44.38 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcchHHHHHHHHh
Q 019313 5 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 53 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL 53 (343)
.++..+++..+||.++|.+|.++++|+.....++.+|+ .+.+++..+.
T Consensus 234 ~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~ 281 (332)
T 3zux_A 234 VVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH 281 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence 34566788999999999999999998888888899999 5777777775
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.34 E-value=4.7e+02 Score=23.58 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=18.5
Q ss_pred hHHHHHHHHhcCchhHHHHH--HHhhhccccc
Q 019313 213 RVLDSSAALVGEAAIPAMTL--VIGANLLSGL 242 (343)
Q Consensus 213 ~~i~~~l~~lg~~~vPl~ll--~lG~~La~~~ 242 (343)
.-+++.++.++....|+.++ +.|+|+...|
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mP 307 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLP 307 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCC
Confidence 33455666666777777776 4566666533
No 4
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=6.72 E-value=4.7e+02 Score=15.63 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 019313 321 LWTYAVAAFALTLWITFYIWLL 342 (343)
Q Consensus 321 ~~stllsivTipl~~~~~l~~~ 342 (343)
+++++++++..-+.+.++-+|+
T Consensus 4 i~~~IIaPivVGvvl~L~d~WL 25 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVL 25 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777776664
No 5
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=6.44 E-value=5.7e+02 Score=19.08 Aligned_cols=78 Identities=6% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceeeEeecCCcchHHHHHHHHhhhcC-C-CCCCChhhHhhhhHHHHHHHHHHhhhhh
Q 019313 9 FLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEES-N-SPFGDTSVCSSYGKAYASLSMAVGAIYI 86 (343)
Q Consensus 9 ~~v~~l~g~~~~~l~~~~~~~r~~~~~~~~f~Ns~~lPl~lv~aL~~~~-~-~~fg~~~~~~~~g~~Yv~iy~~v~~ll~ 86 (343)
.++-.+.|.+...+++-..+. -|.|.+.==+.+.+-++.++ . ..+.+..+....+..|...|.+++++++
T Consensus 14 ~l~~~ifAi~G~~lFg~~~~~--------~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~ 85 (112)
T 4f4l_A 14 TVVFYIAAVMATNLYGATFPE--------WFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTV 85 (112)
T ss_dssp HHHHHHHHHHHHHHHTTTCHH--------HHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccc--------cccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 334445566666777532211 15665543344445444332 0 0111111112235677778888888777
Q ss_pred hhcccccc
Q 019313 87 WTYVYYVM 94 (343)
Q Consensus 87 wt~G~~ll 94 (343)
-.+=..++
T Consensus 86 lNLfiaVi 93 (112)
T 4f4l_A 86 LNLFIGII 93 (112)
T ss_dssp HHHHTTTC
T ss_pred HHHHHHHH
Confidence 77555554
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.78 E-value=6.6e+02 Score=15.18 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019313 5 ILLSFLIGSALAWILIKI 22 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l 22 (343)
....+++|..+|+++-|+
T Consensus 12 ~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 12 SFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 344566677777776664
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=4.61 E-value=1.2e+03 Score=17.81 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=10.5
Q ss_pred hhhhhhhhhchHHHHHHHHHH
Q 019313 174 EKIDLKMIFAPSTIAAIIGFV 194 (343)
Q Consensus 174 ~~~~~k~l~nP~~ia~i~gli 194 (343)
++..+|++.--.++++++-++
T Consensus 89 rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 89 RKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp HHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566665444444444443
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=4.42 E-value=7.5e+02 Score=15.32 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 019313 5 ILLSFLIGSALAWILIKIT 23 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l~ 23 (343)
+...+++|..+|+++-|+=
T Consensus 13 ~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 13 MVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3455677788888777764
No 9
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=5.62 E-value=2e+02 Score=16.28 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019313 4 NILLSFLIGSALAWILI 20 (343)
Q Consensus 4 ~~~l~~~v~~l~g~~~~ 20 (343)
+.+++.++|..+|+.+.
T Consensus 4 ~l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLF 20 (26)
Confidence 56777788888888664
No 10
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=3.57 E-value=7.9e+02 Score=15.06 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCCCh
Q 019313 258 IRYILLPLLGIVIVKAAYRFGFIGSDS 284 (343)
Q Consensus 258 ~RLii~P~i~~~~~~~~~~~~~l~~d~ 284 (343)
.|+++.-.+.+.+..+ ..|+++.||
T Consensus 4 LKi~Vy~vV~ffvsLF--iFGfLsnDP 28 (38)
T 3arc_I 4 LKITVYIVVTFFVLLF--VFGFLSGDP 28 (38)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHTTGG
T ss_pred EEeeehhHHHHHHHHH--HccccCCCC
Confidence 3444444444433221 234455554
Done!