Query 019313
Match_columns 343
No_of_seqs 158 out of 909
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 14:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 9.4 1.2E+02 0.0085 16.6 2.5 25 179-203 5-29 (34)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 5.4 2.4E+02 0.017 14.7 2.4 18 71-88 3-20 (30)
3 d1g8fa3 c.37.1.15 (A:390-511) 4.9 2.1E+02 0.015 20.6 2.7 30 26-55 1-32 (122)
4 d1q90m_ f.23.25.1 (M:) PetM su 4.8 2.9E+02 0.021 14.8 2.6 15 8-22 15-29 (34)
5 d2r6gf2 f.58.1.1 (F:261-504) M 4.5 6.8E+02 0.05 18.8 8.8 34 5-38 28-62 (244)
6 d1q90r_ f.23.12.1 (R:) ISP sub 3.7 3.5E+02 0.026 15.3 2.5 22 179-200 10-31 (39)
7 d1o82a_ a.64.2.1 (A:) Bacterio 3.5 5.2E+02 0.038 15.8 3.6 13 294-306 5-17 (70)
8 d1tm9a_ a.225.1.1 (A:) Hypothe 3.1 4.2E+02 0.03 18.3 2.9 19 264-282 94-112 (137)
9 d1ldda_ a.4.5.34 (A:) Anaphase 2.9 3.1E+02 0.023 17.8 1.9 11 320-330 8-18 (74)
10 d1m8pa3 c.37.1.15 (A:391-573) 2.8 3.2E+02 0.023 18.9 2.2 28 26-53 1-30 (183)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.45 E-value=1.2e+02 Score=16.60 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=18.7
Q ss_pred hhhhchHHHHHHHHHHHHhhccchh
Q 019313 179 KMIFAPSTIAAIIGFVIGTISPFRK 203 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~l~~ 203 (343)
|+++|=...+.+.|..++..-|+-+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvk 29 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHh
Confidence 6678888899999998887654433
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.38 E-value=2.4e+02 Score=14.67 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhhhhhhh
Q 019313 71 GKAYASLSMAVGAIYIWT 88 (343)
Q Consensus 71 g~~Yv~iy~~v~~ll~wt 88 (343)
...|+.+|.-.-.++++.
T Consensus 3 ~i~yv~ifac~i~lfffa 20 (30)
T d2axtt1 3 TITYVFIFACIIALFFFA 20 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 567888877666666654
No 3
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.93 E-value=2.1e+02 Score=20.57 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=26.2
Q ss_pred CCCCCCceeeEeecCCcc--hHHHHHHHHhhh
Q 019313 26 PPHLQGLVIGCCSAGNMG--NLLLIIVPAVCE 55 (343)
Q Consensus 26 ~~~~r~~~~~~~~f~Ns~--~lPl~lv~aL~~ 55 (343)
|+..+++.++.+..+|+| .+-.++...|-+
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999998 788888888765
No 4
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.81 E-value=2.9e+02 Score=14.79 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019313 8 SFLIGSALAWILIKI 22 (343)
Q Consensus 8 ~~~v~~l~g~~~~~l 22 (343)
.+++|..+|+.+-|+
T Consensus 15 ~tl~glaigfvllrv 29 (34)
T d1q90m_ 15 MTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhheee
Confidence 456777788777664
No 5
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.48 E-value=6.8e+02 Score=18.79 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHhC-CCCCCCCceeeEee
Q 019313 5 ILLSFLIGSALAWILIKITR-TPPHLQGLVIGCCS 38 (343)
Q Consensus 5 ~~l~~~v~~l~g~~~~~l~~-~~~~~r~~~~~~~~ 38 (343)
..++..++..+|+.++.++. .+.+.|+.+.....
T Consensus 28 ~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~ 62 (244)
T d2r6gf2 28 SLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLI 62 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 34455666677777766663 34445555444333
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.73 E-value=3.5e+02 Score=15.31 Aligned_cols=22 Identities=5% Similarity=-0.259 Sum_probs=14.5
Q ss_pred hhhhchHHHHHHHHHHHHhhcc
Q 019313 179 KMIFAPSTIAAIIGFVIGTISP 200 (343)
Q Consensus 179 k~l~nP~~ia~i~glii~~~p~ 200 (343)
|+++|=.+.+.+.+-..++.-|
T Consensus 10 R~~MNLll~G~~~~~~~g~l~p 31 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALG 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhccc
Confidence 6667777777777766655433
No 7
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.47 E-value=5.2e+02 Score=15.81 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=6.8
Q ss_pred ccCchHHHHHHHH
Q 019313 294 YAVPPALAVGTII 306 (343)
Q Consensus 294 ~a~P~A~~~~~la 306 (343)
++.|.++...++-
T Consensus 5 fgipa~ia~~vln 17 (70)
T d1o82a_ 5 FGIPAAVAGTVLN 17 (70)
T ss_dssp HCCCHHHHHHHHH
T ss_pred hCCcHHHHHHHHH
Confidence 4555555544444
No 8
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=3.11 E-value=4.2e+02 Score=18.31 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHcCccCC
Q 019313 264 PLLGIVIVKAAYRFGFIGS 282 (343)
Q Consensus 264 P~i~~~~~~~~~~~~~l~~ 282 (343)
|++.+.+.++++.+|++.+
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 6677777778888888763
No 9
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.85 E-value=3.1e+02 Score=17.78 Aligned_cols=11 Identities=0% Similarity=-0.001 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q 019313 320 LLWTYAVAAFA 330 (343)
Q Consensus 320 ~~~stllsivT 330 (343)
.+|+|+.+++|
T Consensus 8 ~~w~yI~gMLt 18 (74)
T d1ldda_ 8 RSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 57999998887
No 10
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=2.82 E-value=3.2e+02 Score=18.89 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=22.8
Q ss_pred CCCCCCceeeEeecCCcc--hHHHHHHHHh
Q 019313 26 PPHLQGLVIGCCSAGNMG--NLLLIIVPAV 53 (343)
Q Consensus 26 ~~~~r~~~~~~~~f~Ns~--~lPl~lv~aL 53 (343)
|+..+|.++..++.+-+| ++.=.+-.-|
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999 6776666555
Done!