BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019314
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 83 EVVDELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GG 140
E + G ++FDR G+G SD P + A DI +L + L L + +VGFSM GG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 141 QVVWSCLKYISHRLTGAALIAPV 163
V ++ S R+ G L+ V
Sbjct: 99 DVARYIARHGSARVAGLVLLGAV 121
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 83 EVVDELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GG 140
E + G ++FDR G+G SD P + A DI +L + L L + +VGFSM GG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 141 QVVWSCLKYISHRLTGAALIAPV 163
V ++ S R+ G L+ V
Sbjct: 99 DVARYIARHGSARVAGLVLLGAV 121
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 83 EVVDELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GG 140
E + G ++FDR G+G SD P + A DI +L + L L + +VGFSM GG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 141 QVVWSCLKYISHRLTGAALIAPV 163
V ++ S R+ G L+ V
Sbjct: 99 DVARYIARHGSARVAGLVLLGAV 121
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 83 EVVDELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GG 140
E + G ++FDR G+G SD P + A DI +L + L L + +VGFSM GG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 141 QVVWSCLKYISHRLTGAALIAPV 163
V ++ S R+ G L+ V
Sbjct: 99 DVARYIARHGSARVAGLVLLGAV 121
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 83 EVVDELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GG 140
E + G ++FDR G+G SD P + A DI +L + L L + +VGFSM GG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 141 QVVWSCLKYISHRLTGAALIAPV 163
V ++ S R+ G L+ V
Sbjct: 99 DVARYIARHGSARVAGLVLLGAV 121
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 77 ACLSFQEVVDELGIYI-VSFDRPGYGESDP-DPKRTRKSLALDIEELADQLGLGSKFYVV 134
CL F E + +G Y + D PG G SDP P + L IE + + +G +F +
Sbjct: 37 TCLFF-EPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLETLIEAIEEIIG-ARRFILY 94
Query: 135 GFSMGGQVVWSCLKYISHRLTGAALIAPVI 164
G S GG + + ++ + G L PVI
Sbjct: 95 GHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 87 ELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVW 144
+ G ++++DR G+G+S P + A D+ + + L L +VGFSMG G+V
Sbjct: 49 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVAR 107
Query: 145 SCLKYISHRLTGAALIAPV 163
Y + R+ A +A +
Sbjct: 108 YVSSYGTARIAAVAFLASL 126
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 90 IYIVSFDRPGYGESDPDPKRTR--KSLALDIEELADQLGLGSKFYVVGFSMGG 140
++++ D+PGYG SD + + + A+ ++ L DQLGLG + +VG S+GG
Sbjct: 86 FHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLG-RVPLVGNSLGG 137
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 87 ELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVW 144
+ G ++++DR G+G+S P + A D+ + + L L +VGFSMG G+V
Sbjct: 48 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVAR 106
Query: 145 SCLKYISHRLTGAALIA 161
Y + R+ A +A
Sbjct: 107 YVSSYGTARIAKVAFLA 123
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 87 ELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVW 144
+ G ++++DR G+G+S P + A D+ + + L L +VGFSMG G+V
Sbjct: 48 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVAR 106
Query: 145 SCLKYISHRLTGAALIA 161
Y + R+ A +A
Sbjct: 107 YVSSYGTARIAKVAFLA 123
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 87 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 143
+ G +++ D GYGES P+ + + +E+ D+LGL + +G GG +V
Sbjct: 64 QAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLV 122
Query: 144 WSCLKYISHRLTG-AALIAPVI 164
W + R+ A+L P I
Sbjct: 123 WYMALFYPERVRAVASLNTPFI 144
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 93 VSFDRPGYGESDP-DPKRTRKSLALDIEELADQLGLGSKFYVVGFSMGGQVVWSCLKYIS 151
+ D PG G SDP P + L IE + + +G +F + G S GG + + ++
Sbjct: 53 IYLDLPGXGNSDPISPSTSDNVLETLIEAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLK 111
Query: 152 HRLTGAALIAPVI 164
+ G L PVI
Sbjct: 112 DQTLGVFLTCPVI 124
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 87 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 143
+ G +++ D GYGES P+ + + +E+ D+LGL + +G GG +V
Sbjct: 79 QAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLV 137
Query: 144 WSCLKYISHRLTG-AALIAPVI 164
W + R+ A+L P I
Sbjct: 138 WYMALFYPERVRAVASLNTPFI 159
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 89 GIYIVSFDRPGYGESDPDPKRTR----KSLALDIEELADQLGLGSKFYVVGFSMGGQVVW 144
G +V FD+ G G S P+ R +L D LA+ LG+ +F ++ G V
Sbjct: 52 GFRVVYFDQRGSGRSLELPQDPRLFTVDALVEDTLLLAEALGV-ERFGLLAHGFGAVVAL 110
Query: 145 SCLKYISHRLTGAALIAPVINYWWPGFPANLTKEAYYLQLPQDQWALRVA 194
L+ GA L+AP +N+ W A L + A LP + L+ A
Sbjct: 111 EVLRRFPQ-AEGAILLAPWVNFPW--LAARLAEAAGLAPLPDPEENLKEA 157
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 41/224 (18%)
Query: 91 YIVSFDRPGYGESD-PD--PKRTRKSLALDIEE---LADQLGLGSKFYVVGFSMGGQVVW 144
++V+ D G+G+S+ P+ P + + +E+ L + G+ K ++VG SMGG V
Sbjct: 60 FVVAPDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGI-EKSHIVGNSMGGAVTL 118
Query: 145 SCLKYISHRLTGAALIAPVINYWWPGFPANLTKEAYYLQLPQDQWALRVAHYAPWLAYWW 204
+ R AL+ V G P N R A LA++
Sbjct: 119 QLVVEAPERFDKVALMGSV------GAPMN----------------ARPPELARLLAFYA 156
Query: 205 NTQKLFPPSAVV---ARRPEIFSAQDVQLMPKLAVRQINRAQVIQQGVHESLFRDMMIGF 261
+ +L P ++ PE F + + + V + IQ E +F M G
Sbjct: 157 DP-RLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQ----EVMFESMKAGM 211
Query: 262 GTWEFDPMDLENPFPNSEGSVHLWQGDEDRLVPVILQRYISKKL 305
+ P L P+ V ++ G +DR+VP+ Y++K L
Sbjct: 212 ESLVIPPATLGR-LPH---DVLVFHGRQDRIVPLDTSLYLTKHL 251
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 90 IYIVSFDRPGYGESDPDPKRTR--KSLALDIEELADQLGLGSKFYVVGFSMGG 140
++++ D+PGYG SD + + + A+ ++ L DQLGLG + +VG ++GG
Sbjct: 66 FHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLG-RVPLVGNALGG 117
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 87 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 143
+ G +++ D GYGES P+ + + +E+ D+LGL + +G GG +V
Sbjct: 283 QAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLV 341
Query: 144 WSCLKYISHRLTG-AALIAPVI 164
W + R+ A+L P I
Sbjct: 342 WYMALFYPERVRAVASLNTPFI 363
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 43/227 (18%)
Query: 89 GIYIVSFDRPGYGESDPD-PKRTRKSLALDIEELADQLGLGSKFYVVGFSMGGQVVWSCL 147
G +V+ DR G+G S A D+ + LG+ +V + GG+VV
Sbjct: 49 GYRVVAHDRRGHGRSSQVWDGHDMDHYADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMA 108
Query: 148 KYISHRLTGAALIA--PVINYWWPGFPANLTKEAYYLQLPQDQWALRVAHYAPWLAYWWN 205
++ ++ A LIA P + PG P L K + D + +VA
Sbjct: 109 RHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVF------DGFQAQVA----------- 151
Query: 206 TQKLFPPSAVVARRPEIFSAQDVQLMPKLAVRQINRAQV-IQQGVHESLFRDMMIGFGTW 264
+ R + + +DV P NR V +G+ + +R MIG
Sbjct: 152 -----------SNRAQFY--RDVPAGPFYG---YNRPGVEASEGIIGNWWRQGMIGSAKA 195
Query: 265 EFDPM------DLENPFPNSEGSVHLWQGDEDRLVPVILQRYISKKL 305
+D + D + V + GD+D++VP +S KL
Sbjct: 196 HYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQIVPYENSGVLSAKL 242
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 87 ELGIYIVSFDRPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVW 144
+ G ++++DR G+G+S P + A D+ + + L L +VGFS G G+V
Sbjct: 48 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSTGTGEVAR 106
Query: 145 SCLKYISHRLTGAALIA 161
Y + R+ A +A
Sbjct: 107 YVSSYGTARIAKVAFLA 123
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 87 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 143
+ G +++ D GYG+S P+ ++ L +E+ D+LG+ + +G G +V
Sbjct: 281 QAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVF-IGHDWAGVMV 339
Query: 144 WSCLKYISHRLTGAA 158
W+ + R+ A
Sbjct: 340 WNMALFYPERVRAVA 354
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 38 QTSHQYLKFLNSIEYPTSL-LHLNFHLFNGCVGSLNFTVLAC----------LSFQEVVD 86
QT +FLN E +L +H FN C G + TV+ +F +D
Sbjct: 7 QTEAATSRFLNVEEAGKTLRIH-----FNDC-GQGDETVVLLHGSGPGATGWANFSRNID 60
Query: 87 ---ELGIYIVSFDRPGYGESDPDPKRTRKS--LALDIEELADQLGLGSKFYVVGFSMGGQ 141
E G ++ D PG+G+SD +S A ++ + DQL + +K +++G SMGG
Sbjct: 61 PLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDI-AKIHLLGNSMGGH 119
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 92 IVSFDRPGYGESDPDP------KRTRKSLALDIEELADQLGLGSKFYVVGFSMGGQVVWS 145
+V+ D GYG+S +++ +A D E+ +LG +FYVVG G +V
Sbjct: 54 VVATDLRGYGDSSRPASVPHHINYSKRVMAQDQVEVMSKLGY-EQFYVVGHDRGARVAHR 112
Query: 146 CLKYISHRLTGAAL--IAPV 163
HR+ AL IAP
Sbjct: 113 LALDHPHRVKKLALLDIAPT 132
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 289 EDRLVPVILQRYISKKLPWIRYHEIPGSGHL 319
+D + P L R ++ LP RY +IP +GHL
Sbjct: 241 DDVVTPPYLGREVADALPNGRYLQIPDAGHL 271
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 79 LSFQEVVDELGIYIVSFDRPGYGESDPDPKRTRKSL------ALDIEELADQLGLGSKFY 132
++ QE ++E+G+ + D G+G+S D K +L L + + A +L + Y
Sbjct: 46 VAVQETLNEIGVATLRADMYGHGKS--DGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIY 103
Query: 133 VVGFSMGGQVVWSCLKYISHRLTGAALIAPVINYWWPGFPANLTKE 178
+ G S GG V + AA+ +I P PA + E
Sbjct: 104 MAGHSQGGLSV----------MLAAAMERDIIKALIPLSPAAMIPE 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,555,459
Number of Sequences: 62578
Number of extensions: 444966
Number of successful extensions: 792
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 30
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)