BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019315
(343 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572295|ref|XP_002527086.1| conserved hypothetical protein [Ricinus communis]
gi|223533509|gb|EEF35249.1| conserved hypothetical protein [Ricinus communis]
Length = 476
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/290 (74%), Positives = 252/290 (86%), Gaps = 3/290 (1%)
Query: 55 STHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDKKSE 114
ST I FCSQ D FD+LSS Q PE E + + NEELELLNKP+ V I+NG++ EVDK+SE
Sbjct: 19 STQISFCSQNDTFDNLSSTQVPEEQEEDRIRENEELELLNKPSPVVINNGLSIEVDKESE 78
Query: 115 KPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE-DKVSVEYYEPKPG 173
D++EALAPFLKFF+PRDS EE++EEG E+GV + + +++ E KV+V+YYEPKPG
Sbjct: 79 TIDKDEALAPFLKFFEPRDSLEEIKEEGKELGVIEGNSNGNNEDKEAKKVNVDYYEPKPG 138
Query: 174 DFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKM 233
DFV+GVVVSGNE+KLDVNVGADLLGTMLTKEVLPLYDKEM++LLCD++KDAE FMVRGK+
Sbjct: 139 DFVVGVVVSGNESKLDVNVGADLLGTMLTKEVLPLYDKEMEYLLCDMEKDAERFMVRGKI 198
Query: 234 GIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQI 293
GI+KD+ AMSGG G GRPVVETGT+LFAEVLGRTLSGRPLLSTRRLFR++AWHRVRQI
Sbjct: 199 GIIKDE--AAMSGGPGLGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRIAWHRVRQI 256
Query: 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVS 343
K+LNEPIEV+ TEWNTGGLLTRIEGLRAFLPKAEL++RV NF ELKE VS
Sbjct: 257 KELNEPIEVRITEWNTGGLLTRIEGLRAFLPKAELMNRVKNFKELKENVS 306
>gi|359495207|ref|XP_002263508.2| PREDICTED: uncharacterized protein LOC100240915 [Vitis vinifera]
Length = 513
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 263/342 (76%), Gaps = 25/342 (7%)
Query: 10 SFTFTLLNSAPPL-STCSFVQNGNA-KYPLQ--QSRKFHSFAASFRFLRSTHIVFCSQKD 65
SF F+ S PPL S SF N K PL+ QS+ S S R+T I FCS D
Sbjct: 13 SFRFS---SHPPLNSNISFTSFHNTPKLPLRKPQSKTLVSPKNS-PVWRTTQISFCSPND 68
Query: 66 VFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPF 125
+F D+SS Q PE E +G++ EELELL KP+ VP++NG AS++D + +KPD++EALAPF
Sbjct: 69 IFYDISSTQLPETPEIDGVQDIEELELLGKPSPVPLNNGSASDIDSELKKPDKDEALAPF 128
Query: 126 LKFFKPRDSAEEVE----EEGSEVGVSRESIDVDDKVGEDK-VSVEYYEPKPGDFVIGVV 180
LKFFKPR+S+EE E+GSE+ S G K VSVEYYEPKPGDFV+GVV
Sbjct: 129 LKFFKPRESSEEANGASGEDGSEISES----------GSTKLVSVEYYEPKPGDFVVGVV 178
Query: 181 VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDD 240
VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEM++LLCD++KDAEEFMV GKM IV++DD
Sbjct: 179 VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEYLLCDVEKDAEEFMVHGKMSIVRNDD 238
Query: 241 AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPI 300
A +S G PVVETGTVLFAEVLGRTLSGRPLLSTRR FR++AWHRVRQIKQLNEPI
Sbjct: 239 A--LSRVPMQGSPVVETGTVLFAEVLGRTLSGRPLLSTRRFFRRIAWHRVRQIKQLNEPI 296
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
EV+ TEWNTGGLLTRIEGLRAFLPKAELL+RV +FTELKE V
Sbjct: 297 EVRITEWNTGGLLTRIEGLRAFLPKAELLNRVKSFTELKENV 338
>gi|449446381|ref|XP_004140950.1| PREDICTED: 30S ribosomal protein S1 homolog A-like [Cucumis
sativus]
Length = 530
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/292 (70%), Positives = 244/292 (83%), Gaps = 3/292 (1%)
Query: 52 FLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDK 111
F R + ++FCS+ D+FD+LSS Q P+ +G++ +E+ LLNKP+ PISNGV+SE+D+
Sbjct: 71 FRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDGIQEIDEIGLLNKPSPAPISNGVSSEIDQ 130
Query: 112 KSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVG-EDKVSVEYYEP 170
+ E PDE EALAPF+KFFK +DSA+E EEE + E+ID DD+ +K++VEYYEP
Sbjct: 131 EVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIANKLNVEYYEP 190
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
KPGD V+GVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEM+ L CDL KDAE FM+
Sbjct: 191 KPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMESLTCDLDKDAESFMMN 250
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
GKMG+VK +DA S G GPGRPVVE GTVLFAEVLGRTLSGRPLLSTRRLFR++AWHRV
Sbjct: 251 GKMGLVKYEDA--FSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRV 308
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
RQIK L+EPIEVK +EWNTGGLLTRIEGLRAFLPKAELL+RVNNFTELKE V
Sbjct: 309 RQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360
>gi|297739376|emb|CBI29366.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/259 (74%), Positives = 218/259 (84%), Gaps = 17/259 (6%)
Query: 89 ELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVE----EEGSE 144
LELL KP+ VP++NG AS++D + +KPD++EALAPFLKFFKPR+S+EE E+GSE
Sbjct: 14 HLELLGKPSPVPLNNGSASDIDSELKKPDKDEALAPFLKFFKPRESSEEANGASGEDGSE 73
Query: 145 VGVSRESIDVDDKVGEDK-VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTK 203
+ S G K VSVEYYEPKPGDFV+GVVVSGNENKLDVNVGADLLGTMLTK
Sbjct: 74 ISES----------GSTKLVSVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTK 123
Query: 204 EVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFA 263
EVLPLYDKEM++LLCD++KDAEEFMV GKM IV++DDA +S G PVVETGTVLFA
Sbjct: 124 EVLPLYDKEMEYLLCDVEKDAEEFMVHGKMSIVRNDDA--LSRVPMQGSPVVETGTVLFA 181
Query: 264 EVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFL 323
EVLGRTLSGRPLLSTRR FR++AWHRVRQIKQLNEPIEV+ TEWNTGGLLTRIEGLRAFL
Sbjct: 182 EVLGRTLSGRPLLSTRRFFRRIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAFL 241
Query: 324 PKAELLSRVNNFTELKEKV 342
PKAELL+RV +FTELKE V
Sbjct: 242 PKAELLNRVKSFTELKENV 260
>gi|449527959|ref|XP_004170975.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101224960 [Cucumis sativus]
Length = 529
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 192/292 (65%), Positives = 232/292 (79%), Gaps = 4/292 (1%)
Query: 52 FLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDK 111
F R + ++FCS+ D+FD+LSS Q P+ +G++ +E+ LLNKP+ PISNGV+SE+D+
Sbjct: 71 FRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDGIQEIDEIGLLNKPSPAPISNGVSSEIDQ 130
Query: 112 KSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVG-EDKVSVEYYEP 170
+ E PDE EALAPF+KFFK +DSA+E EEE + E+ID DD+ +K++VEYYEP
Sbjct: 131 EVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIANKLNVEYYEP 190
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
KPGD V+GVVVSGNEN ++ + + KEVLPLYDKEM+ L CDL KDAE FM+
Sbjct: 191 KPGDVVVGVVVSGNENSW-ISTWGGFVRNNVDKEVLPLYDKEMESLTCDLDKDAESFMMN 249
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
GKMG+VK +DA S G GPGRPVVE GTVLFAEVLGRTLSGRPLLSTRRLFR++AWHRV
Sbjct: 250 GKMGLVKYEDA--FSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRV 307
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
RQIK L+EPIEVK +EWNTGGLLTRIEGLRAFLPKAELL+RVNNFTELKE V
Sbjct: 308 RQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 359
>gi|224066601|ref|XP_002302157.1| predicted protein [Populus trichocarpa]
gi|222843883|gb|EEE81430.1| predicted protein [Populus trichocarpa]
Length = 486
Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 204/360 (56%), Positives = 246/360 (68%), Gaps = 56/360 (15%)
Query: 5 VQACKSFTFTLLNSAPPLSTCSFV---------QNGNAKYPLQQSRKFHSFAA------- 48
+Q CKS T L + + P +T S V N AK P FHSF +
Sbjct: 6 LQPCKSLT--LFSYSLPSNTDSLVITHKRSIVHHNKCAKPPC-----FHSFCSLGTLKAI 58
Query: 49 ----SFRFLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNG 104
+ + +S+ + CSQ DVFDD SS Q PE ++ ++ NEELELLNKP+ V +NG
Sbjct: 59 FLSKNSQLWKSSLVTLCSQNDVFDDFSSTQLPEKERDDRIQVNEELELLNKPSPVIFNNG 118
Query: 105 VASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE-DKV 163
+ E DK+SEKP ++EALAPFLKFFK DS +EV E+ ++GV E VD++ E K+
Sbjct: 119 LDVEADKESEKPGKDEALAPFLKFFKSNDSLDEVSEDERDLGVVEERSGVDNEDKEPRKI 178
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+V+YYEPKPGDFV+GVVVSGNENKLDVN+GADLLGTMLTKEVLPLYDKEM+FLLCD KKD
Sbjct: 179 NVDYYEPKPGDFVVGVVVSGNENKLDVNIGADLLGTMLTKEVLPLYDKEMEFLLCDTKKD 238
Query: 224 AEEFMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
+EFMV+GKMGIVKD+ +AMS G G G+PVVETGTVLF+EVLGRTLSGRPLLSTRRLF
Sbjct: 239 VKEFMVKGKMGIVKDE--VAMSPGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLF 296
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R++AW RVRQ GLRAFLPKAEL++RVNNF ELKE V
Sbjct: 297 RRLAWQRVRQ-------------------------GLRAFLPKAELMNRVNNFKELKENV 331
>gi|356534027|ref|XP_003535559.1| PREDICTED: uncharacterized protein LOC100820145 [Glycine max]
Length = 513
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 204/320 (63%), Positives = 238/320 (74%), Gaps = 25/320 (7%)
Query: 36 PLQQSRKFHSFAASFRF-------------LRSTHIVFCSQKDVFDDLSSAQFPENVENE 82
P + KF SFA + L TH S+ D FD S+ ++ ++
Sbjct: 37 PRKNPTKFRSFAKVVLYTPRASIVSKKDPILGYTHFTLRSRSDGFDGFSTDVSQDDGTSQ 96
Query: 83 GLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEG 142
LE +LELLNKP+ V ++ +SEV+ + EKP +EEALAPFLKFFK +DS +EVEE+G
Sbjct: 97 ELE---QLELLNKPSPVLVTEESSSEVEVEEEKPSKEEALAPFLKFFKGKDSGQEVEEDG 153
Query: 143 SEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLT 202
+ E D KVSVEYYEPKPGDFV+GVVVSGNENKLDVNVGADLLGTMLT
Sbjct: 154 EGLEGENEEGD-------KKVSVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLT 206
Query: 203 KEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLF 262
KEVLPLY KEM+ LLCD+ KDAE+FMV GKMGIVK+++AI SG PGRPV+E GT+LF
Sbjct: 207 KEVLPLYGKEMENLLCDVDKDAEDFMVNGKMGIVKNEEAI--SGVPVPGRPVLEIGTILF 264
Query: 263 AEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAF 322
AEVLGRTLSGRPLLSTRRLFR++AWHRVRQIKQLNEPIEV+ TEWNTGGLLTRIEGLRAF
Sbjct: 265 AEVLGRTLSGRPLLSTRRLFRRIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAF 324
Query: 323 LPKAELLSRVNNFTELKEKV 342
LPKAEL+ R N+FTELKE V
Sbjct: 325 LPKAELVKRANSFTELKENV 344
>gi|297839005|ref|XP_002887384.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333225|gb|EFH63643.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 501
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 189/305 (61%), Positives = 224/305 (73%), Gaps = 35/305 (11%)
Query: 42 KFHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLV 99
+F SFA F R + I FCS++DV VEN G+ EELELLNKP+ V
Sbjct: 56 RFRSFAICRDFATRGAYGIRFCSREDV----------SGVENGGIVAEEELELLNKPSPV 105
Query: 100 PISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVG 159
P SE +K++ K D++E L PFLKFFKP E +E E
Sbjct: 106 P-----KSENEKENGKADDDEILEPFLKFFKPEGEGEGIEAEEET--------------- 145
Query: 160 EDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCD 219
D+VSVEYY+PKPGDFV+GVVVSGNENKLDV++GAD+LGTMLTKE+LPLYDKE+D+LLCD
Sbjct: 146 -DRVSVEYYDPKPGDFVVGVVVSGNENKLDVSIGADMLGTMLTKEILPLYDKELDYLLCD 204
Query: 220 LKKDAEEFMVRGKMGIVKDDD--AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLS 277
LK DAEEF+V GKMGI KDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS
Sbjct: 205 LKYDAEEFLVNGKMGIFKDDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLS 264
Query: 278 TRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
+RR FR+++WHRVRQIKQ+NEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ +VNNFTE
Sbjct: 265 SRRYFRRISWHRVRQIKQVNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNNFTE 324
Query: 338 LKEKV 342
LKE V
Sbjct: 325 LKENV 329
>gi|334183835|ref|NP_177317.2| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|7239499|gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from
this gene [Arabidopsis thaliana]
gi|332197102|gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 500
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 188/303 (62%), Positives = 223/303 (73%), Gaps = 33/303 (10%)
Query: 43 FHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVP 100
F F+ F +R + I FCS++DV V N G+ EE+ELLNKPN +P
Sbjct: 56 FRGFSICREFAVRGAYGIRFCSREDV----------SGVGNGGIVAEEEIELLNKPNPLP 105
Query: 101 ISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE 160
S +++S K D++ L PFLKFFKP + E E VS E+
Sbjct: 106 KSE------NEESGKADDDAILEPFLKFFKPEEEGEG-----IESEVSDET--------- 145
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL 220
D+VSVEYY+PKPGDFV+GVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+D+LLCDL
Sbjct: 146 DRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDL 205
Query: 221 KKDAEEFMVRGKMGIVKDDD-AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
K DAEEF+V GKMGIVKDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS+R
Sbjct: 206 KYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSR 265
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
R FR++AWHRVRQIKQLNEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ +VN FTELK
Sbjct: 266 RYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELK 325
Query: 340 EKV 342
E V
Sbjct: 326 ENV 328
>gi|62320614|dbj|BAD95265.1| RIBOSOMAL PROTEIN [Arabidopsis thaliana]
Length = 336
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 188/303 (62%), Positives = 223/303 (73%), Gaps = 33/303 (10%)
Query: 43 FHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVP 100
F F+ F +R + I FCS++DV V N G+ EE+ELLNKPN +P
Sbjct: 56 FRGFSICREFAVRGAYGIRFCSREDV----------SGVGNGGIVAEEEIELLNKPNPLP 105
Query: 101 ISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE 160
S +++S K D++ L PFLKFFKP + E E VS E+
Sbjct: 106 KSE------NEESGKADDDAILEPFLKFFKPEEEGEG-----IESEVSDET--------- 145
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL 220
D+VSVEYY+PKPGDFV+GVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+D+LLCDL
Sbjct: 146 DRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDL 205
Query: 221 KKDAEEFMVRGKMGIVKDDD-AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
K DAEEF+V GKMGIVKDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS+R
Sbjct: 206 KYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSR 265
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
R FR++AWHRVRQIKQLNEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ +VN FTELK
Sbjct: 266 RYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELK 325
Query: 340 EKV 342
E V
Sbjct: 326 ENV 328
>gi|224082512|ref|XP_002306723.1| predicted protein [Populus trichocarpa]
gi|222856172|gb|EEE93719.1| predicted protein [Populus trichocarpa]
Length = 296
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 219/304 (72%), Gaps = 23/304 (7%)
Query: 1 MQTPVQACKSFTFTLLNSAPP------LSTCSFV-QNGNAKYPLQQSRKFHSFAASFR-- 51
MQT +Q CKS T +S PP ++ S V QN K P FHSF S
Sbjct: 1 MQTLLQPCKSLTI-FSSSLPPHSNNLVITQSSIVHQNKCPKSPC-----FHSFCTSGTSA 54
Query: 52 ----FLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVAS 107
RS HI CSQ D FDD SS Q PE +++ ++ NEELELLNKP+ V +NG+
Sbjct: 55 KNPPLWRSAHISLCSQNDAFDDFSSTQLPEKAQDDRIQENEELELLNKPSPVVFNNGLDV 114
Query: 108 EVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGED-KVSVE 166
E K+SEKP ++EALAPFLKFFK DS + V E+ + GV E ID+D++ E K++V+
Sbjct: 115 EAVKESEKPGKDEALAPFLKFFKSNDSLDGVSEDDGDSGVVEERIDMDNEDKEARKINVD 174
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEE 226
YY PKPGDFV+GVVVSGNENKLDVN+GADLLGTMLTKEVLPLYDKE +FLLCD KKDA+E
Sbjct: 175 YYNPKPGDFVVGVVVSGNENKLDVNIGADLLGTMLTKEVLPLYDKEFEFLLCDTKKDAKE 234
Query: 227 FMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKM 285
FMV+GKMGIVKDD +AMS G G G+PVVETGTVLF+EVLGRTLSGRPLLSTRRLFR++
Sbjct: 235 FMVKGKMGIVKDD--VAMSRGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLFRRI 292
Query: 286 AWHR 289
AW R
Sbjct: 293 AWQR 296
>gi|422778917|gb|AFX82591.1| plastid S1 binding domain protein precursor [Arabidopsis thaliana]
Length = 487
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/292 (61%), Positives = 216/292 (73%), Gaps = 33/292 (11%)
Query: 43 FHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVP 100
F F+ F +R + I FCS++DV V N G+ EE+ELLNKPN +P
Sbjct: 56 FRGFSICREFAVRGAYGIRFCSREDV----------SGVGNGGIVAEEEIELLNKPNPLP 105
Query: 101 ISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE 160
S +++S K D++ L PFLKFFKP + E +E E VS E+
Sbjct: 106 KSE------NEESGKADDDAILEPFLKFFKPEEEGEGIESE-----VSDET--------- 145
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL 220
D+VSVEYY+PKPGDFV+GVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+D+LLCDL
Sbjct: 146 DRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDL 205
Query: 221 KKDAEEFMVRGKMGIVKDDD-AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
K DAEEF+V GKMGIVKDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS+R
Sbjct: 206 KYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSR 265
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
R FR++AWHRVRQIKQLNEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ R
Sbjct: 266 RYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVGR 317
>gi|356561395|ref|XP_003548967.1| PREDICTED: 30S ribosomal protein S1-like [Glycine max]
Length = 439
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/257 (65%), Positives = 197/257 (76%), Gaps = 6/257 (2%)
Query: 88 EELELLNKPNLVPISNGVASEVDKKSEK-PDEEEALAPFLKFFK-PRDSAEEVEEEGSEV 145
E LEL +KP+LVPI N SE+D SE EE+ LAPFLKFFK DS E EE G +
Sbjct: 18 ETLELQDKPSLVPIKNESFSEIDVHSENDSTEEDVLAPFLKFFKGSNDSVVEEEEAGGVL 77
Query: 146 GVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEV 205
S+E + + +K EYYEPKPGDFV+GVVVSGNENKL+VNVG++L GTMLTKEV
Sbjct: 78 EGSKERGNESENA--EKFCAEYYEPKPGDFVVGVVVSGNENKLNVNVGSELPGTMLTKEV 135
Query: 206 LPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEV 265
LPLY KEM+ LLCD+ E V+GK+GI+K+DDAI +G PG VVE GT+LFAEV
Sbjct: 136 LPLYSKEMEHLLCDVNNAEESPTVQGKIGILKNDDAI--NGVPVPGGTVVEIGTILFAEV 193
Query: 266 LGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPK 325
LGRTL+GRPLLSTRRLFR++AWHR+RQIKQL EPIEV+ TEWNT GLLTRIEGLRAFLPK
Sbjct: 194 LGRTLAGRPLLSTRRLFRRIAWHRLRQIKQLGEPIEVRITEWNTKGLLTRIEGLRAFLPK 253
Query: 326 AELLSRVNNFTELKEKV 342
AEL+ R N+ TELKE +
Sbjct: 254 AELMKRANSITELKENI 270
>gi|356576093|ref|XP_003556168.1| PREDICTED: 30S ribosomal protein S1-like [Glycine max]
Length = 366
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 153/180 (85%), Positives = 167/180 (92%), Gaps = 2/180 (1%)
Query: 163 VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKK 222
VSVEYYE KPGDFV+GVVVSGNENKLDVNVGADLLGTMLTKEVLPLY KEM+ LLCD++K
Sbjct: 20 VSVEYYESKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYGKEMENLLCDVEK 79
Query: 223 DAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
DAE+FMVRGKMGIVK+++AI SG PGRPVVE GT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 80 DAEDFMVRGKMGIVKNEEAI--SGVPVPGRPVVEIGTILFAEVLGRTLSGRPLLSTRRLF 137
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R++AWHRVRQIKQLNEPIEV+ TEWNTGGLLTRIEGLRAFLPKAEL+ R N+FTELKE V
Sbjct: 138 RRIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAFLPKAELVKRANSFTELKENV 197
>gi|115438028|ref|NP_001043440.1| Os01g0589000 [Oryza sativa Japonica Group]
gi|53792249|dbj|BAD52882.1| 30S ribosomal protein S1-like [Oryza sativa Japonica Group]
gi|113532971|dbj|BAF05354.1| Os01g0589000 [Oryza sativa Japonica Group]
gi|215704693|dbj|BAG94321.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 127/179 (70%), Gaps = 11/179 (6%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY DL AE
Sbjct: 82 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYR-------ADLPAFAEAA 134
Query: 228 MVR-GKMGIVKDDDA---IAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
R G +G V A G G GR +V GTV+FAEVLGRTLSGRPLLS RRLFR
Sbjct: 135 PPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTLSGRPLLSARRLFR 194
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
++AWHR RQ+ QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+N FT+LK KV
Sbjct: 195 RLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKV 253
>gi|218188559|gb|EEC70986.1| hypothetical protein OsI_02640 [Oryza sativa Indica Group]
Length = 361
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 127/179 (70%), Gaps = 11/179 (6%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY DL AE
Sbjct: 82 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYR-------ADLPAFAEAA 134
Query: 228 MVR-GKMGIVKDDDAI---AMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
R G +G V A G G GR +V GTV+FAEVLGRTLSGRPLLS RRLFR
Sbjct: 135 PPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTLSGRPLLSARRLFR 194
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
++AWHR RQ+ QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+N FT+LK KV
Sbjct: 195 RLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKV 253
>gi|357132802|ref|XP_003568017.1| PREDICTED: uncharacterized protein LOC100833069 isoform 1
[Brachypodium distachyon]
Length = 512
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/233 (51%), Positives = 150/233 (64%), Gaps = 16/233 (6%)
Query: 120 EALAPFLKFFKPRDSAEEVEEEGSEVGVS-RESIDVDDKVGEDK--VSVEYYEPKPGDFV 176
EALAP+L FF+ + +GSE + R S+D + G+D V YY+PKPGD V
Sbjct: 100 EALAPYLNFFQVKGG------DGSECAAAVRSSVDDASEDGDDAGGRGVIYYDPKPGDLV 153
Query: 177 IGVVVSGNENKLDVNVGADL-LGTMLTKEVLPLYDKEMDFLLCDLKKD---AEEFMVRGK 232
+GVVV G+ LDV+VGA ML KE P+ E+ +L CD+ A EF G+
Sbjct: 154 VGVVVGGDWRALDVDVGAGGEPALMLAKEAAPVSAVELGYLACDVASSGGGASEFAAEGR 213
Query: 233 MGIV---KDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
+G+V ++ A G G PVV G V+FAEVLGRTL GRPLLS RRLFR++AWHR
Sbjct: 214 VGVVVSGREGSVTARRSGKDKGAPVVGVGMVVFAEVLGRTLGGRPLLSARRLFRRVAWHR 273
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
VRQIKQLN PI VK EWN GGL++RIEGLRAFLPKAE++ R NFT+LK V
Sbjct: 274 VRQIKQLNLPIMVKVFEWNAGGLISRIEGLRAFLPKAEMMRRPRNFTDLKNNV 326
>gi|242057851|ref|XP_002458071.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
gi|241930046|gb|EES03191.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
Length = 426
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/194 (57%), Positives = 131/194 (67%), Gaps = 15/194 (7%)
Query: 153 DVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKE 212
D D G D+ Y+PKPGDF +GVVVSG E +LDV VGAD L T+L KE+LPL
Sbjct: 71 DADSASGTDR----RYDPKPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLDRDS 126
Query: 213 MDFLLCDLKKDAEEFMVRGKMGIVK----DDDAIAMSGGSGPGRPVVETGTVLFAEVLGR 268
D + G +G+V DDD A G R +V GTV+FAEVLGR
Sbjct: 127 AD------SPTRQALPGPGSIGVVAGLTVDDDKEARRQKRG-SRTLVAPGTVVFAEVLGR 179
Query: 269 TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
TLSGRPLLS RRLFR++AWHR RQI QL+EPI+VK EWNTGGLLTRIEGLRAFLPK EL
Sbjct: 180 TLSGRPLLSARRLFRRLAWHRARQILQLDEPIQVKIYEWNTGGLLTRIEGLRAFLPKFEL 239
Query: 329 LSRVNNFTELKEKV 342
+ R+++FT+LK KV
Sbjct: 240 VDRISSFTDLKNKV 253
>gi|414881608|tpg|DAA58739.1| TPA: hypothetical protein ZEAMMB73_806215 [Zea mays]
gi|414881609|tpg|DAA58740.1| TPA: hypothetical protein ZEAMMB73_806215 [Zea mays]
gi|418207172|gb|AFX62688.1| plastid S1-binding domain protein precursor [Zea mays]
Length = 422
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/184 (59%), Positives = 130/184 (70%), Gaps = 17/184 (9%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+ Y+PKPGDF +GVVVSG E +LDV VGAD L T+L+KE+LPL D
Sbjct: 78 TCRRYDPKPGDFAVGVVVSGTEARLDVAVGADRLATLLSKELLPLDRDSSD-------PP 130
Query: 224 AEEFMVR-GKMGIVK----DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLST 278
+ + R G +G+V DDD GS R +V GTV+FAEVLGRTLSGRPLLS
Sbjct: 131 TRQALPRLGSIGVVAGPSVDDDR--QKRGS---RTLVAPGTVVFAEVLGRTLSGRPLLSA 185
Query: 279 RRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTEL 338
RRLFR++AWHR RQI QLNEPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+++FT+L
Sbjct: 186 RRLFRRLAWHRARQILQLNEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELVDRISSFTDL 245
Query: 339 KEKV 342
K KV
Sbjct: 246 KNKV 249
>gi|357135372|ref|XP_003569284.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like
[Brachypodium distachyon]
Length = 427
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/183 (58%), Positives = 127/183 (69%), Gaps = 16/183 (8%)
Query: 166 EYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAE 225
EYYEPK G++ +GVVVSG E +LDV VGAD L T+L+KE+LPL E+ ++
Sbjct: 73 EYYEPKSGEYAVGVVVSGTEARLDVAVGADRLATLLSKELLPLCRSELP------NGGSQ 126
Query: 226 EFMVR-GKMGIVKDDDAIAMSGGSGP-----GRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
R G +GIV A + G P R +V GTV+FAEVLGRTLSGRPLLS R
Sbjct: 127 AVPPRLGSVGIV----AASAVDGDDPNKKHGARTLVAPGTVVFAEVLGRTLSGRPLLSAR 182
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
RLFR++AWHR QI QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+N FT+LK
Sbjct: 183 RLFRRLAWHRASQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELVDRINTFTDLK 242
Query: 340 EKV 342
V
Sbjct: 243 NNV 245
>gi|326520954|dbj|BAJ92840.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 507
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 119/256 (46%), Positives = 154/256 (60%), Gaps = 10/256 (3%)
Query: 90 LELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSR 149
L LL+KP P + + + P +ALAP+L FF +V+ ++V +
Sbjct: 71 LHLLDKPFPSPSAPEEDEPEPEAAPAPSTADALAPYLNFF-------QVKGAEADVAATA 123
Query: 150 ESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADL-LGTMLTKEVLPL 208
+ G V Y++PKPGD V GVVV G+ LDV+VGA MLTKE P
Sbjct: 124 GKDSSEGGPGTGGRGVIYFDPKPGDLVAGVVVGGDARALDVDVGAGGEPALMLTKEAAPA 183
Query: 209 YDKEMDFLLCDLKKD-AEEFMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVL 266
+E +L CD+ A EF G++G+ + + G PVV GTV+FAEVL
Sbjct: 184 SPEEFAYLACDVASGGAREFAAEGRVGVAVGGVDLKVGRTGKEKCAPVVGVGTVVFAEVL 243
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GRTL GRPLLS RRLFR++AWHRVRQIKQLN PI+VK +EWN GGLL+RIEGLRAFLPK
Sbjct: 244 GRTLGGRPLLSARRLFRRVAWHRVRQIKQLNVPIKVKISEWNAGGLLSRIEGLRAFLPKP 303
Query: 327 ELLSRVNNFTELKEKV 342
++++R NFT+LK V
Sbjct: 304 QMMTRPRNFTDLKNNV 319
>gi|326516488|dbj|BAJ92399.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 426
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/181 (56%), Positives = 129/181 (71%), Gaps = 12/181 (6%)
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEE 226
+Y+PK GD+ +G+VVSG E +LDV VGAD L T+LTKE+LPL E F +K
Sbjct: 75 HYDPKSGDYAVGIVVSGTEARLDVAVGADRLATLLTKELLPLCRAE--FPTGGVKPVPPR 132
Query: 227 FMVRGKMGIVK----DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
G +G+++ D++ G+ R +V GTV+FAEVLGRTLSGRPLLS RRLF
Sbjct: 133 ---PGSVGVLEASPMDEETQNQKRGA---RTLVPPGTVVFAEVLGRTLSGRPLLSARRLF 186
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R+++WHR RQI QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R++ FT+LK V
Sbjct: 187 RRLSWHRARQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRISTFTDLKNNV 246
Query: 343 S 343
S
Sbjct: 247 S 247
>gi|326503538|dbj|BAJ86275.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 124/179 (69%), Gaps = 3/179 (1%)
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADL-LGTMLTKEVLPLYDKEMDFLLCDLKKD-A 224
+++PKPGD V GVVV G+ LDV+VGA MLTKE P +E +L CD+ A
Sbjct: 22 HFDPKPGDLVAGVVVGGDARALDVDVGAGGEPALMLTKEAAPASPEEFAYLACDVASGGA 81
Query: 225 EEFMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
EF G++G+ + + G PVV GTV+FAEVLGRTL GRPLLS RRLFR
Sbjct: 82 REFAAEGRVGVAVGGVDLKVGRTGKEKCAPVVGVGTVVFAEVLGRTLGGRPLLSARRLFR 141
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
++AWHRVRQIKQLN PI+VK +EWN GGLL+RIEGLRAFLPK ++++R NFT+LK V
Sbjct: 142 RVAWHRVRQIKQLNVPIKVKISEWNAGGLLSRIEGLRAFLPKPQMMTRPRNFTDLKNNV 200
>gi|115465119|ref|NP_001056159.1| Os05g0535800 [Oryza sativa Japonica Group]
gi|113579710|dbj|BAF18073.1| Os05g0535800 [Oryza sativa Japonica Group]
Length = 592
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 123/275 (44%), Positives = 162/275 (58%), Gaps = 23/275 (8%)
Query: 88 EELELLNKPNLVPI-SNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVG 146
+EL LL KP P ++ SE + + EEALAPFLKFF+ + + + ++ + G
Sbjct: 61 DELHLLEKPFPSPSPADEDESESTEAAPALSTEEALAPFLKFFQGKSTEPDEDDAAAGGG 120
Query: 147 VSRESIDVDDKVGEDKVS----------VEYYEPKPGDFVIGVVVSGNENKLDVNVGAD- 195
V++ + V YY+PKPGD +GVVV G+ LD++VGA
Sbjct: 121 GGGGGGYVEEDEEDKGEGSAGAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGG 180
Query: 196 LLGTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIVK-------DDDAIAMSGG 247
ML KE +P+ +E ++L CD+ KDA +F GK+G+V + G
Sbjct: 181 EPALMLAKEAVPMTGEEFEYLACDVASKDAAQFAAEGKVGVVVSGGEGQGEATGGRNGKG 240
Query: 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
G G P + GTV+F EVLGRTL GRPLLS RRLFR++AWHR IKQLN PI+VK EW
Sbjct: 241 RGRGSPALGVGTVVFTEVLGRTLGGRPLLSARRLFRRVAWHR---IKQLNVPIKVKIFEW 297
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
N GGLLTRIEGLRAFLPK E+++R NFT+LK V
Sbjct: 298 NAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTV 332
>gi|125553118|gb|EAY98827.1| hypothetical protein OsI_20772 [Oryza sativa Indica Group]
Length = 536
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 161/292 (55%), Gaps = 37/292 (12%)
Query: 88 EELELLNKPNLVPI-SNGVASEVDKKSEKPDEEEALAPFLKFFKPRDS-------AEEVE 139
+EL LL KP P ++ SE + + EEALAPFLKFF+ + + A
Sbjct: 61 DELHLLEKPFPSPSPADEDESESTEAAPALSTEEALAPFLKFFQGKSTEPDEDDAAAGGG 120
Query: 140 EEGSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGAD-LLG 198
G + + G V YY+PKPGD +GVVV G+ LD++VGA
Sbjct: 121 GGGYVEEDEEDKGEGSAGAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGGEPA 180
Query: 199 TMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIVK-------DDDAIAMSGGSGP 250
ML KE +P+ +E ++L CD+ KDA +F GK+G+V + G G
Sbjct: 181 LMLAKEAVPMTGEEFEYLACDVASKDAAQFAAEGKVGVVVSGGEGQGEATGGRNGKGRGR 240
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQ------------------ 292
G P + GTV+F EVLGRTL GRPLLS RRLFR++AWHRVRQ
Sbjct: 241 GSPALGVGTVVFTEVLGRTLGGRPLLSARRLFRRVAWHRVRQLISISISEKMRPMRKDEA 300
Query: 293 --IKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
IKQLN PI+VK EWN GGLLTRIEGLRAFLPK E+++R NFT+LK V
Sbjct: 301 DTIKQLNVPIKVKIFEWNAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTV 352
>gi|222632365|gb|EEE64497.1| hypothetical protein OsJ_19347 [Oryza sativa Japonica Group]
Length = 581
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 122/180 (67%), Gaps = 9/180 (5%)
Query: 172 PGDFVIGVVVSGNENKLDVNVGAD-LLGTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMV 229
PG F +GVVV G+ LD++VGA ML KE +P+ +E ++L CD+ KDA +F
Sbjct: 102 PGTFAVGVVVGGDGRTLDIDVGAGGEPALMLAKEAVPMTGEEFEYLACDVASKDAAQFAA 161
Query: 230 RGKMGIVK-------DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
GK+G+V + G G G P + GTV+F EVLGRTL GRPLLS RRLF
Sbjct: 162 EGKVGVVVSGGEGQGEATGGRNGKGRGRGSPALGVGTVVFTEVLGRTLGGRPLLSARRLF 221
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R++AWHRVRQIKQLN PI+VK EWN GGLLTRIEGLRAFLPK E+++R NFT+LK V
Sbjct: 222 RRVAWHRVRQIKQLNVPIKVKIFEWNAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTV 281
>gi|218188557|gb|EEC70984.1| hypothetical protein OsI_02634 [Oryza sativa Indica Group]
Length = 408
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 106/179 (59%), Gaps = 36/179 (20%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY DL AE
Sbjct: 77 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYR-------ADLPAFAEAA 129
Query: 228 MVR-GKMGIVKD---DDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
R G +G+V + G G GR +V GTV+FAEVLGRTLSGRPLLS RRLFR
Sbjct: 130 PPRPGSVGVVASPASGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTLSGRPLLSARRLFR 189
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
++AWHR RQ GLRAFLPK EL+ R+N F++LK KV
Sbjct: 190 RLAWHRARQ-------------------------GLRAFLPKFELMDRINTFSDLKNKV 223
>gi|413946240|gb|AFW78889.1| hypothetical protein ZEAMMB73_339041 [Zea mays]
Length = 513
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 147/279 (52%), Gaps = 23/279 (8%)
Query: 83 GLEGNEELELLNKPNLVPISNGVASEVDKKSEKP--DEEEALAPFLKFFKPRDSAEEVEE 140
G G++EL LL KP +P ++ P EEALAPFLKFF+ + + +V
Sbjct: 55 GGSGSDELHLLEKP--LPAVAEDNEAEEELESAPVSSTEEALAPFLKFFQVKSTDPDVGA 112
Query: 141 EGSEVGVSRESI--DVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGAD-LL 197
+ ++ V E+ DV GE VS YY+PKPGDFV GVVV + LDV++G+
Sbjct: 113 DTADGEVPEEASRRDVLSAAGERGVS--YYDPKPGDFVAGVVVRSDGRTLDVDIGSSGEP 170
Query: 198 GTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIV---------KDDDAIAMSGG 247
ML KE P+ +E +L CD+ K A EF G++G+V D +AI G
Sbjct: 171 ALMLAKESAPVPAEEFGYLACDVASKCAAEFAAEGRVGVVVRQFRGGGEGDGEAIIGRNG 230
Query: 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR---RLFRKM-AWHRVRQIKQLNEPIEVK 303
PV+ + + + L R F KM + +IKQLN PI++K
Sbjct: 231 KEKVAPVLRADNITLIYLFPALKGLKLKLLKRGSENGFNKMYGVLKFVEIKQLNVPIKIK 290
Query: 304 FTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
EWN GLL+RIEGLRAFLPK E+++R NFT+LK KV
Sbjct: 291 IYEWNASGLLSRIEGLRAFLPKPEMMTRPRNFTDLKNKV 329
>gi|242088619|ref|XP_002440142.1| hypothetical protein SORBIDRAFT_09g026760 [Sorghum bicolor]
gi|241945427|gb|EES18572.1| hypothetical protein SORBIDRAFT_09g026760 [Sorghum bicolor]
Length = 496
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 161/338 (47%), Gaps = 40/338 (11%)
Query: 20 PPLSTCSFVQNGNAKYPLQQSRKFHSFAASFRFLRSTHIVFCSQKDVFDDLSSAQFPENV 79
PP S S + + P ++ K H + FL S +V SQ + S +
Sbjct: 2 PPHSLVSLLPAASIS-PRRRQAKHHKAPTASHFLFSRRVV--SQPPLHASPSPTSAGGSG 58
Query: 80 ENEGLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPR----DSA 135
++EL LL KP+ + A E + + EEALAPFLKFF+ + D+
Sbjct: 59 SG-----SDELHLLEKPSPTVAEDNEAEEEPEPAPLLSTEEALAPFLKFFQVKSTDPDAG 113
Query: 136 EEVEEEGSEVG-VSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGA 194
+ E G V E+ D V YY+PKPGDFV GVVV + LDV++G+
Sbjct: 114 AGIAGEARADGEVPEEASRRDAMSTAGGRGVSYYDPKPGDFVAGVVVRSDGRTLDVDIGS 173
Query: 195 -DLLGTMLTKEVLPLYDKEMDFLLCDLKKD-AEEFMVRGKMGIV--------KDDDAIAM 244
L ML KE P+ +E FL CD+ + A EF G++G+V D++A
Sbjct: 174 GGELALMLAKESAPVPGEEFGFLACDVASERATEFAAEGRVGVVIRQVSAGEGDEEATVG 233
Query: 245 SGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKF 304
G G V+ G+ + + L V +IKQLN PI+VK
Sbjct: 234 RNGKAKGARVLRAGSEDGIDQIYGVLKC-----------------VEKIKQLNVPIKVKI 276
Query: 305 TEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
EWN GLL+RIEGLRAFLPK E+++R NFT+LK KV
Sbjct: 277 YEWNASGLLSRIEGLRAFLPKPEMMTRPRNFTDLKNKV 314
>gi|357132804|ref|XP_003568018.1| PREDICTED: uncharacterized protein LOC100833069 isoform 2
[Brachypodium distachyon]
Length = 498
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 127/233 (54%), Gaps = 30/233 (12%)
Query: 120 EALAPFLKFFKPRDSAEEVEEEGSEVGVS-RESIDVDDKVGEDK--VSVEYYEPKPGDFV 176
EALAP+L FF+ + +GSE + R S+D + G+D V YY+PKPGD V
Sbjct: 100 EALAPYLNFFQVKGG------DGSECAAAVRSSVDDASEDGDDAGGRGVIYYDPKPGDLV 153
Query: 177 IGVVVSGNENKLDVNVGADL-LGTMLTKEVLPLYDKEMDFLLCDLKKD---AEEFMVRGK 232
+GVVV G+ LDV+VGA ML KE P+ E+ +L CD+ A EF G+
Sbjct: 154 VGVVVGGDWRALDVDVGAGGEPALMLAKEAAPVSAVELGYLACDVASSGGGASEFAAEGR 213
Query: 233 MGIV---KDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
+G+V ++ A G G PVV + F + L+ ++ H
Sbjct: 214 VGVVVSGREGSVTARRSGKDKGAPVVGINSHHF--------------YSECLYMTVSVHT 259
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
QIKQLN PI VK EWN GGL++RIEGLRAFLPKAE++ R NFT+LK V
Sbjct: 260 FVQIKQLNLPIMVKVFEWNAGGLISRIEGLRAFLPKAEMMRRPRNFTDLKNNV 312
>gi|167999023|ref|XP_001752217.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696612|gb|EDQ82950.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 558
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 116/202 (57%), Gaps = 17/202 (8%)
Query: 135 AEEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGA 194
+EEV+E S S+ S+ VEYY P G V GVVVSGN KLD+++GA
Sbjct: 222 SEEVDETLSRASDSQVSL----------TDVEYYVPICGHRVTGVVVSGNYAKLDMDIGA 271
Query: 195 DLLGTMLTKEVLPLYDKEMD---FLLCDLKKDAEEFMV--RGKMGIVKDDDAIAMSGGSG 249
LG M +E+LPL ++D ++L D + + G ++ D++
Sbjct: 272 AKLGQMHVQEILPLDKFQIDQTSWILADDAGEGGGAGLPPNGHTHVLYDEEVFTYEAPES 331
Query: 250 PGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
P +V+ GTVL EV+G T SGR LLS R+ +++ W+R+ QIK+ +EP E+ T +N
Sbjct: 332 P--LLVDIGTVLDMEVVGITTSGRALLSARKAAQRIEWNRIMQIKEEDEPFEITITGFNK 389
Query: 310 GGLLTRIEGLRAFLPKAELLSR 331
GLL R+EGLRAFLP AEL+++
Sbjct: 390 AGLLARVEGLRAFLPHAELVNQ 411
>gi|168012348|ref|XP_001758864.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690001|gb|EDQ76370.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 750
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 103/178 (57%), Gaps = 24/178 (13%)
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEE 226
YY PK GD+V+G+V SGN LD+++GA+ LG + K V+PL +C++K + E
Sbjct: 350 YYNPKVGDYVMGIVASGNHGTLDMDIGANKLGHLFWKNVVPLD-------VCNIKDMSGE 402
Query: 227 F---------MVRGKMG---IVKDDDAIAMSGGSGPGRPV-VETGTVLFAEVLGRTLSGR 273
F + G G V D++ + ++ + P+ VE GTVL EV G T SGR
Sbjct: 403 FPDTNSPDSNVTLGPAGGPYFVHDEEVLNLALEA----PMAVELGTVLTMEVKGITPSGR 458
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LL R + R+ +W RVRQ+ + N EV+ EW GL+T+IEGLRAFLP L++R
Sbjct: 459 ALLCARSVAREYSWQRVRQMLEYNATFEVQIAEWTPAGLVTKIEGLRAFLPLYYLVNR 516
>gi|47900418|gb|AAT39212.1| putative 30S ribosomal protein S1 [Oryza sativa Japonica Group]
Length = 590
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 141/270 (52%), Gaps = 24/270 (8%)
Query: 88 EELELLNKPNLVPI-SNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVG 146
+EL LL KP P ++ SE + + EEALAPFLKFF+ + + + ++ + G
Sbjct: 61 DELHLLEKPFPSPSPADEDESESTEAAPALSTEEALAPFLKFFQGKSTEPDEDDAAAGGG 120
Query: 147 VSRESIDVDDKVGEDKVS----------VEYYEPKPGDFVIGVVVSGNENKLDVNVGAD- 195
V++ + V YY+PKPGD +GVVV G+ LD++VGA
Sbjct: 121 GGGGGGYVEEDEEDKGEGSAGAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGG 180
Query: 196 LLGTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPV 254
ML KE +P+ +E ++L CD+ KDA +F GK+G+V +G
Sbjct: 181 EPALMLAKEAVPMTGEEFEYLACDVASKDAAQFAAEGKVGVVVSGGEGQGEA-TGGRNGK 239
Query: 255 VETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQ--IKQLNEPIEVKFTEWNTGGL 312
V+ E L P+ +T +WH + IKQLN PI+VK EWN GGL
Sbjct: 240 GRGRGVISMESYDYELMA-PICTT-------SWHNLYAPAIKQLNVPIKVKIFEWNAGGL 291
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
LTRIEGLRAFLPK E+++R NFT+LK V
Sbjct: 292 LTRIEGLRAFLPKPEMMTRPRNFTDLKNTV 321
>gi|168053672|ref|XP_001779259.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669358|gb|EDQ55947.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 600
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 143 SEVGVSRESIDVDDKVGEDKV--------SVEYYEPKPGDFVIGVVVSGNENKLDVNVGA 194
S VG + S V K D+V S EYY P G V+GVVV GN K+DV++GA
Sbjct: 171 STVGNTCHSFSVLLKTSPDRVEFSKLVDDSFEYYVPVVGHRVVGVVVFGNHAKVDVDIGA 230
Query: 195 DLLGTMLTKEVLPL----YDKEMDFLLCDLKK--DAEEFMVRGKMG--------IVKDDD 240
G + +++LPL D+ L D KK +A E RG +G ++ D++
Sbjct: 231 AQYGQLHMQDLLPLDQLPIDQNKWILADDTKKGDEAGEGNERGGLGTPPRGLPYVIHDEE 290
Query: 241 AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV---------- 290
A P V+ GTVL EV+G+T++G+PLLS R+ +++AW RV
Sbjct: 291 VYAYES---PAPHCVDIGTVLEMEVVGKTMTGKPLLSARKAAQRVAWDRVLQQCDDLFCE 347
Query: 291 -------------RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
QIK +E IEV+ ++ G++ R+EGLRAFLP E +
Sbjct: 348 PIFCCLTSGVSWGDQIKDEHESIEVEIVDYGKAGVIARVEGLRAFLPLTEFV 399
>gi|326526035|dbj|BAJ93194.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 240
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVS 343
VRQI QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R++ FT+LK VS
Sbjct: 8 VRQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRISTFTDLKNNVS 61
>gi|222618762|gb|EEE54894.1| hypothetical protein OsJ_02412 [Oryza sativa Japonica Group]
Length = 402
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEM 213
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY ++
Sbjct: 82 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYRADL 127
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
N GL T GLRAFLPK EL+ R+N FT+LK KV
Sbjct: 184 NYWGLQTD-AGLRAFLPKFELMDRINTFTDLKNKV 217
>gi|307154019|ref|YP_003889403.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306984247|gb|ADN16128.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 300
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGTVL-------FAEVLGRTLS 271
+VRGK+ D A GG PG +PV L F + G
Sbjct: 36 VVRGKVIQYTSDGAYVEIGGKSPGFVPLKEASIQPVTNLNECLPLQQEQDFLIISGPDAE 95
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ ++S R+L K AW V++I + + ++V+ T N GG+ +EGLRAF+P++ L+ +
Sbjct: 96 GQLIISRRQLAIKQAWDTVKEISESGQSVQVRVTGTNRGGVTAEVEGLRAFIPRSHLVEK 155
>gi|411116936|ref|ZP_11389423.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713039|gb|EKQ70540.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 300
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
YE + G V G VVS + N + V++GA L + +EV KE+ +L + + EF
Sbjct: 28 YEFQKGQIVRGKVVSYDTNGVYVDIGAKSLAFVPEQEVSIKGVKELSAVLP--QDEEAEF 85
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
+ IV++ DA G+ LS R+L + AW
Sbjct: 86 L------IVREQDA-----------------------------DGQVTLSLRQLEIRKAW 110
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
R+ +I+ N+ + V+ T N GG+ ++G+R F+P++ L+ R N
Sbjct: 111 DRLAEIRDSNQSLTVRVTGTNKGGVTVDVQGVRGFIPRSHLVERDN 156
>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 411
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + DDD A+ PG P+ L V GR
Sbjct: 68 DEILVDIGAKAEGVVPAREMQSLSDDDRAALK----PGDPL------LVFVVQSEDKEGR 117
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LS R ++ +W R++Q + E IE K +N GGLL ++G+R F+P +++
Sbjct: 118 ATLSIDRARQEKSWRRLQQCYETGEIIEAKVINYNKGGLLVNLDGVRGFVPSSQV 172
>gi|218438198|ref|YP_002376527.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 7424]
gi|218170926|gb|ACK69659.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 284
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGTVL-------FAEVLGRTLS 271
+VRGK+ D A GG PG PV L F +
Sbjct: 20 IVRGKVIQYTSDGAYVEIGGKSPGFVPLREASIEPVTNLNDYLPLDQEQDFLIISSADAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS R+L K AW++V++I + ++++ T N GG+ +EGLR F+P++ L+ +
Sbjct: 80 GQLILSRRQLIIKQAWNQVKEIAESGTSVQMRVTGINRGGVTGEVEGLRGFIPRSHLVEK 139
>gi|427711825|ref|YP_007060449.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 6312]
gi|427375954|gb|AFY59906.1| ribosomal protein S1 [Synechococcus sp. PCC 6312]
Length = 339
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 152
Query: 332 VN 333
VN
Sbjct: 153 VN 154
>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
Length = 330
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 152
Query: 332 VN 333
VN
Sbjct: 153 VN 154
>gi|158334623|ref|YP_001515795.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158304864|gb|ABW26481.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 289
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ +G+ LS RRL K W ++ +++ ++ ++V T N GG+ +EGLR
Sbjct: 74 FLIIKGQDANGQVTLSIRRLELKHLWTKLLELQSQSQSVQVTITGVNKGGVTADVEGLRG 133
Query: 322 FLPKAELLSRVN 333
F+P++ LL R N
Sbjct: 134 FIPRSHLLDRDN 145
>gi|359457620|ref|ZP_09246183.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 289
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ +G+ LS RRL K W ++ +++ ++ ++V T N GG+ +EGLR
Sbjct: 74 FLIIKGQDANGQVTLSIRRLELKHLWTKLLELQSQSQSVQVTITGVNKGGVTADVEGLRG 133
Query: 322 FLPKAELLSRVN 333
F+P++ LL R N
Sbjct: 134 FIPRSHLLDRDN 145
>gi|428224572|ref|YP_007108669.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427984473|gb|AFY65617.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 323
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
Length = 320
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 44/190 (23%)
Query: 142 GSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTML 201
+++G +RE E +S Y PGD V G V S +++GA
Sbjct: 10 ATDIGFTREDF-------ERLLSQYDYRFNPGDIVKGTVFSLEPRGALIDIGAK------ 56
Query: 202 TKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVL 261
T LPL + M I + DD + G E T+
Sbjct: 57 TAAYLPLQE----------------------MSINRVDDPTEVLG---------EGDTLD 85
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ LS RR+ AW RVR+++ ++ + K N GG L RIEGLR
Sbjct: 86 FFILSDENEEGQLTLSIRRIEYMKAWERVRKLQTEDQTVRAKIFAVNRGGALVRIEGLRG 145
Query: 322 FLPKAELLSR 331
F+P + L +R
Sbjct: 146 FIPGSHLSTR 155
>gi|443327874|ref|ZP_21056481.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442792485|gb|ELS01965.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 154
>gi|297805748|ref|XP_002870758.1| expressed protein [Arabidopsis lyrata subsp. lyrata]
gi|297316594|gb|EFH47017.1| expressed protein [Arabidopsis lyrata subsp. lyrata]
Length = 118
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 19/80 (23%)
Query: 103 NGVASEVDKK-SEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGED 161
N V +D+K S D+ E L P LKFFKP EG E VS+E+ D
Sbjct: 41 NHVTKLIDEKESGNADDVEILEPCLKFFKP---------EGDESEVSKEA---------D 82
Query: 162 KVSVEYYEPKPGDFVIGVVV 181
+VS EYY+PKP DFV+ +++
Sbjct: 83 RVSAEYYDPKPSDFVVSIIL 102
>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
Length = 363
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
Length = 369
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 152 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 211
>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 385
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 254 VVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G+ + A+VL + SG LS RR + AW R++Q+ + EPIEV+ + GGL
Sbjct: 60 VVSVGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGL 119
Query: 313 LTRIEGLRAFLPKAELLSR--VNNFTELK 339
+ + G+RAF+P A L+ R V N + K
Sbjct: 120 VADV-GVRAFIP-ASLVDRHFVENLEQFK 146
>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9301]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|425442739|ref|ZP_18822976.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9717]
gi|389716148|emb|CCH99589.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9717]
Length = 285
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
>gi|443669233|ref|ZP_21134468.1| S1 RNA binding domain protein [Microcystis aeruginosa DIANCHI905]
gi|159026257|emb|CAO86406.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330475|gb|ELS45188.1| S1 RNA binding domain protein [Microcystis aeruginosa DIANCHI905]
Length = 293
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 28 IVRGRVDQHTSDGAYIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 87
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 88 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 147
>gi|425459775|ref|ZP_18839261.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9808]
gi|389827691|emb|CCI20878.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9808]
Length = 287
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAYIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
AS9601]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 385
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 254 VVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G+ + A+VL + SG LS RR + AW R++Q+ + EPIEV+ + GGL
Sbjct: 60 VVSVGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGL 119
Query: 313 LTRIEGLRAFLPKAELLSR--VNNFTELK 339
+ + G+RAF+P A L+ R V N + K
Sbjct: 120 VADV-GVRAFIP-ASLVDRHFVENLEQFK 146
>gi|440754892|ref|ZP_20934094.1| S1 RNA binding domain protein [Microcystis aeruginosa TAIHU98]
gi|440175098|gb|ELP54467.1| S1 RNA binding domain protein [Microcystis aeruginosa TAIHU98]
Length = 285
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC729]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|427702896|ref|YP_007046118.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427346064|gb|AFY28777.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 141 GQLTLSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 200
>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|425452688|ref|ZP_18832503.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
7941]
gi|389765385|emb|CCI08684.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
7941]
Length = 285
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
>gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D LL D+ +E + + + D++ A+S G VL V G+
Sbjct: 61 DELLVDIGSKSEGIIPAREFSTLTDEERAALSVGD----------HVLVFVVQAENQEGQ 110
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+LS R ++ +W R+++I + E IE + T +N GGLL ++G+R F+P +++
Sbjct: 111 AVLSIDRARQEKSWRRLQEIYEAGEIIEAEVTNYNKGGLLVNLDGVRGFVPASQV 165
>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 366
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 146 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 205
>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9515]
Length = 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 354
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 140 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 199
>gi|86607005|ref|YP_475768.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86555547|gb|ABD00505.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 323
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + SR
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQKEDATVRATIFATNRGGALVRIEGLRGFIPGSHISSR 152
>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
Length = 359
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 142 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 201
>gi|416391978|ref|ZP_11685808.1| SSU ribosomal protein S1p [Crocosphaera watsonii WH 0003]
gi|357263726|gb|EHJ12695.1| SSU ribosomal protein S1p [Crocosphaera watsonii WH 0003]
Length = 304
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-----------RPVVETGTVL-------FAEVLGRT 269
+VRGK+ DD A GG G RP + +L F + +
Sbjct: 36 VVRGKVIQHSDDGAYVDIGGKSAGFVPINEVDLESRP--DLAEILPIDEEKEFIVISEQN 93
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
G+ LS R+L K AW V +I ++ ++++ T N GG++ +EGL+ F+P++ L+
Sbjct: 94 ADGQVKLSRRQLQLKEAWENVEEIAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLM 153
Query: 330 SR 331
+
Sbjct: 154 EK 155
>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 321
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSAVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VN 333
V
Sbjct: 154 VT 155
>gi|422303041|ref|ZP_16390396.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9806]
gi|389792049|emb|CCI12194.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9806]
Length = 285
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSR 331
L+ +
Sbjct: 135 HLIEK 139
>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
Length = 330
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 111 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 170
Query: 332 ------VNNFTELK 339
V++F LK
Sbjct: 171 KAKEELVSDFLPLK 184
>gi|328951609|ref|YP_004368944.1| RNA binding S1 domain-containing protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451933|gb|AEB12834.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
14884]
Length = 551
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R AW +V ++ + EP+EV E GGL+T IEGLRAFLP +++ + RVN
Sbjct: 114 VLSKKRADADKAWRKVVELYENGEPVEVTIREKVRGGLVTYIEGLRAFLPASQVDIKRVN 173
Query: 334 NF 335
+
Sbjct: 174 DL 175
>gi|33866517|ref|NP_898076.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8102]
gi|33633295|emb|CAE08500.1| 30S ribosomal protein S1, homolog A [Synechococcus sp. WH 8102]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLALSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|390439916|ref|ZP_10228280.1| 30S ribosomal protein S1 homolog B [Microcystis sp. T1-4]
gi|389836686|emb|CCI32404.1| 30S ribosomal protein S1 homolog B [Microcystis sp. T1-4]
Length = 285
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSR 331
L+ +
Sbjct: 135 HLIEK 139
>gi|425464130|ref|ZP_18843452.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9809]
gi|389833884|emb|CCI21164.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9809]
Length = 293
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 83 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 142
Query: 327 ELLSR 331
L+ +
Sbjct: 143 HLIEK 147
>gi|352096607|ref|ZP_08957434.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351676257|gb|EHA59411.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 366
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 148 GQLSLSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 207
>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
Length = 346
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLREEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|166363378|ref|YP_001655651.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
gi|166085751|dbj|BAG00459.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
Length = 293
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 83 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 142
Query: 327 ELLSR 331
L+ +
Sbjct: 143 HLIEK 147
>gi|67922621|ref|ZP_00516127.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855549|gb|EAM50802.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 313
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-----------RPVVETGTVL-------FAEVLGRT 269
+VRGK+ DD A GG G RP + +L F + +
Sbjct: 45 VVRGKVIQHSDDGAYVDIGGKSAGFVPINEVDLESRP--DLAEILPIDEEKEFIVISEQN 102
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
G+ LS R+L K AW V +I ++ ++++ T N GG++ +EGL+ F+P++ L+
Sbjct: 103 ADGQVKLSRRQLQLKEAWENVEEIAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLM 162
Query: 330 SR 331
+
Sbjct: 163 EK 164
>gi|425472173|ref|ZP_18851024.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9701]
gi|389881815|emb|CCI37679.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9701]
Length = 285
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQMRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSR 331
L+ +
Sbjct: 135 HLIEK 139
>gi|78185433|ref|YP_377868.1| 30S ribosomal protein S1 [Synechococcus sp. CC9902]
gi|78169727|gb|ABB26824.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|33239803|ref|NP_874745.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237329|gb|AAP99397.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|148242687|ref|YP_001227844.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147850997|emb|CAK28491.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 397
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + AW +VRQ+++ + ++VK T +N GG +EGLR F+P+++L
Sbjct: 187 GMVTVSCRALALRQAWDKVRQLEKEGKVVQVKITGFNRGGCTCDLEGLRGFIPRSQL 243
>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
MIT 9313]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9303]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
Length = 351
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 134 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 193
>gi|148238851|ref|YP_001224238.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847390|emb|CAK22941.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|116072655|ref|ZP_01469921.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
gi|116064542|gb|EAU70302.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
Length = 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
>gi|425446442|ref|ZP_18826446.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9443]
gi|389733348|emb|CCI02879.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9443]
Length = 285
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSR 331
L+ +
Sbjct: 135 HLIEK 139
>gi|425438129|ref|ZP_18818538.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9432]
gi|389676730|emb|CCH94262.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9432]
Length = 293
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 83 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 142
Query: 327 ELLSR 331
L+ +
Sbjct: 143 HLIEK 147
>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 355
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 138 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 197
>gi|159902888|ref|YP_001550232.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888064|gb|ABX08278.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9211]
Length = 371
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 153 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 212
>gi|260436204|ref|ZP_05790174.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
gi|260414078|gb|EEX07374.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
Length = 363
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 145 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 204
>gi|78212018|ref|YP_380797.1| 30S ribosomal protein S1 [Synechococcus sp. CC9605]
gi|78196477|gb|ABB34242.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 386
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 168 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 227
>gi|425456073|ref|ZP_18835784.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9807]
gi|389802925|emb|CCI18094.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9807]
Length = 285
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSR 331
L+ +
Sbjct: 135 HLIEK 139
>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
Length = 398
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|124025115|ref|YP_001014231.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL1A]
gi|123960183|gb|ABM74966.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
NATL1A]
Length = 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 151 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 210
>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 367
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 151 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 210
>gi|428212888|ref|YP_007086032.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001269|gb|AFY82112.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 425
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428222610|ref|YP_007106780.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427995950|gb|AFY74645.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 335
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRALIFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|354567671|ref|ZP_08986839.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353542129|gb|EHC11593.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 300
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W R+ Q+++ ++ +EV+ N GG+ ++GLR F+P++ LL R
Sbjct: 96 GQVTLSRRQLEIKHIWERLAQMRENSQTVEVRVLNVNKGGVTVDLQGLRGFIPRSHLLER 155
Query: 332 VNNFTELK 339
+N LK
Sbjct: 156 -DNLESLK 162
>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
Length = 414
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|434400436|ref|YP_007134440.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428271533|gb|AFZ37474.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 332
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + ++
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAK 154
>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
Length = 361
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 144 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 203
>gi|72383525|ref|YP_292880.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL2A]
gi|72003375|gb|AAZ59177.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 151 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 210
>gi|428200960|ref|YP_007079549.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427978392|gb|AFY75992.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 300
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F V G+ G+ LS R+L K AW V +I + + ++++ T N GG+ +EGLR
Sbjct: 86 FLIVSGQNAEGQVTLSRRQLELKKAWDSVSEIAESGKSVQMRVTGVNKGGVTGEVEGLRG 145
Query: 322 FLPKAELLSR 331
F+P++ L+ +
Sbjct: 146 FIPRSHLIEK 155
>gi|428316075|ref|YP_007113957.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
gi|428239755|gb|AFZ05541.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
Length = 364
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|434389320|ref|YP_007099931.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428020310|gb|AFY96404.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 339
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|423063754|ref|ZP_17052544.1| RNA binding S1 domain protein [Arthrospira platensis C1]
gi|406714603|gb|EKD09764.1| RNA binding S1 domain protein [Arthrospira platensis C1]
Length = 384
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|334121254|ref|ZP_08495327.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333455342|gb|EGK83994.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 371
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 369
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|434391256|ref|YP_007126203.1| RNA binding S1 domain protein [Gloeocapsa sp. PCC 7428]
gi|428263097|gb|AFZ29043.1| RNA binding S1 domain protein [Gloeocapsa sp. PCC 7428]
Length = 299
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 228 MVRGKMGIVKDDDA-IAMSGGSGPGRPVVETG--------TVL-------FAEVLGRTLS 271
+VRGK+ + D A + + G S P+ E G TVL F + + +
Sbjct: 35 VVRGKVFQYESDGAYVDIGGKSAAFIPLTEVGLHSVSDLSTVLPLQEEQEFLIIREQNVD 94
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W ++ ++++ + +EV+ N GG+ ++GLR F+P++ LL R
Sbjct: 95 GQVTLSRRQLQIKQLWEQLSEMQEDGKSLEVRVKGVNKGGVTVDVQGLRGFIPRSHLLER 154
Query: 332 VN 333
N
Sbjct: 155 EN 156
>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 305
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 87 GQLSLSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 146
>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
Length = 375
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|88807804|ref|ZP_01123315.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
gi|88787843|gb|EAR18999.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
Length = 368
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 150 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 209
>gi|376006629|ref|ZP_09783861.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375324995|emb|CCE19614.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 375
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 390
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|254424219|ref|ZP_05037937.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
gi|196191708|gb|EDX86672.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
Length = 206
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428775694|ref|YP_007167481.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428689973|gb|AFZ43267.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 299
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGR-PVVET---GTVLFAEVL------------GRTLS 271
+VRGK +D A GG PG P+ E GT F +++ +
Sbjct: 38 VVRGKAVNYDNDVAYVDIGGKSPGLLPLKEADIAGTTRFEDIIPLDEELEFLVIREQNAD 97
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W + + + +P+E++ T N GG+ I GLRAF+P++ LL+
Sbjct: 98 GQVTLSRRQLQEQRVWETLEEYQTERKPVEMQVTGSNRGGVKGEIMGLRAFVPRSHLLAA 157
Query: 332 VN 333
N
Sbjct: 158 DN 159
>gi|428201607|ref|YP_007080196.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427979039|gb|AFY76639.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 326
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRANVFATNRGGALVRIEGLRGFIPGSHISAR 154
>gi|390442071|ref|ZP_10230090.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
gi|389834605|emb|CCI34216.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
Length = 358
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 122 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 181
>gi|425438866|ref|ZP_18819204.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|425445803|ref|ZP_18825823.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|425454554|ref|ZP_18834284.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
gi|389716744|emb|CCH99046.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|389734101|emb|CCI02187.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|389804745|emb|CCI16018.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
Length = 330
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|422301965|ref|ZP_16389329.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
gi|389788948|emb|CCI15121.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
Length = 330
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|425463814|ref|ZP_18843144.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
gi|389829070|emb|CCI29843.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
Length = 330
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 365
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 123 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 182
>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
Length = 359
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 117 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 176
>gi|409990465|ref|ZP_11273835.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
gi|409938680|gb|EKN79974.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
Length = 320
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|354555643|ref|ZP_08974943.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|353552293|gb|EHC21689.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 336
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 343
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|425459139|ref|ZP_18838625.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443654187|ref|ZP_21131250.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389823195|emb|CCI28787.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443333859|gb|ELS48397.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|126654692|ref|ZP_01726226.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126623427|gb|EAZ94131.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 304
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K AW V +I ++ ++++ T N GG++ +EGL+ F+P++ LL +
Sbjct: 96 GQVKLSRRQLQLKEAWENVGEIAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLLEK 155
>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 343
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428772044|ref|YP_007163832.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428686323|gb|AFZ46183.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 352
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L R+EGLR F+P + + ++
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQQEDATVYSNVFATNRGGALVRVEGLRGFIPGSHISAK 154
>gi|428306344|ref|YP_007143169.1| 30S ribosomal protein S1P [Crinalium epipsammum PCC 9333]
gi|428247879|gb|AFZ13659.1| SSU ribosomal protein S1P [Crinalium epipsammum PCC 9333]
Length = 391
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|425437110|ref|ZP_18817537.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|425449492|ref|ZP_18829331.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|425471179|ref|ZP_18850039.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440754860|ref|ZP_20934062.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|389677991|emb|CCH93122.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|389763766|emb|CCI09762.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|389882968|emb|CCI36602.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440175066|gb|ELP54435.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
Length = 330
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428217034|ref|YP_007101499.1| 30S ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
gi|427988816|gb|AFY69071.1| SSU ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
Length = 391
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQEEDATVRSLIFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|443315844|ref|ZP_21045315.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442784569|gb|ELR94438.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 330
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 96 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 155
>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
Length = 327
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS +R+ ++AW R+RQ + + +E + N GG++ +E +R F P ++L
Sbjct: 103 NGDLMLSLKRMELQVAWQRLRQYLEDDVSVEGRVVATNRGGVIVEVECIRGFCPGSQLGQ 162
Query: 331 RVNNFTELKEK 341
RV F EL ++
Sbjct: 163 RVQTFEELLDR 173
>gi|427418503|ref|ZP_18908686.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425761216|gb|EKV02069.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 340
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQNEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|416402894|ref|ZP_11687458.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
gi|357261819|gb|EHJ11043.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
Length = 358
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 107 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 166
>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 328
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383321905|ref|YP_005382758.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325074|ref|YP_005385927.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490958|ref|YP_005408634.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436225|ref|YP_005650949.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814321|ref|YP_007450773.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500385|sp|P73530.1|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273257|dbj|BAK49744.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271224|dbj|BAL28743.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274394|dbj|BAL31912.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277564|dbj|BAL35081.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958070|dbj|BAM51310.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451780290|gb|AGF51259.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 328
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 152
>gi|359459159|ref|ZP_09247722.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 325
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|434398471|ref|YP_007132475.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428269568|gb|AFZ35509.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 296
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW V +I + + ++V+ T N GG+ IEGLR F+P++ L R
Sbjct: 92 GQVTLSRRQLQLQAAWDNVAEIAESGKSVQVRITGVNKGGVTGEIEGLRGFIPRSHLEQR 151
Query: 332 VN 333
N
Sbjct: 152 DN 153
>gi|86609793|ref|YP_478555.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558335|gb|ABD03292.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 322
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 92 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSTIFATNRGGALVRIEGLRGFIPGSHISTR 151
>gi|384135335|ref|YP_005518049.1| RNA binding S1 domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289420|gb|AEJ43530.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 392
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 254 VVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G+ + A+VL + SG LS RR + AW R++++ + EPIEV+ + GGL
Sbjct: 67 VVSVGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQRLLESGEPIEVEIRDVVKGGL 126
Query: 313 LTRIEGLRAFLPKAELLSR--VNNFTELK 339
+ + G+RAF+P A L+ R V N + K
Sbjct: 127 VADV-GVRAFIP-ASLVDRHFVENLEQFK 153
>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 331
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|428773714|ref|YP_007165502.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428687993|gb|AFZ47853.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 306
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L+ AW + ++++ + +++ T N GG++ +I+GLRAF+P++ L+ +
Sbjct: 99 GQVKLSRRQLYIDQAWDNLTEVQEKGKLVQMLVTGVNRGGVIGQIDGLRAFIPRSHLIEK 158
Query: 332 VNNFTEL 338
NF EL
Sbjct: 159 -ENFEEL 164
>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 328
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|434392818|ref|YP_007127765.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
gi|428264659|gb|AFZ30605.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
Length = 330
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 345
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
Length = 403
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + ++D A+ G ++L V GR
Sbjct: 70 DEILVDIGAKAEGVVPAKEMQSLSEEDRAALKPGD----------SLLVFVVQSEDKEGR 119
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LS R ++ +W R++Q + E IE + +N GGLL ++G+R F+P +++
Sbjct: 120 ATLSIDRARQEKSWRRLQQCYETGEVIEARVVNYNKGGLLVNLDGVRGFVPSSQV 174
>gi|428776647|ref|YP_007168434.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428690926|gb|AFZ44220.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 394
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 383
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|434387366|ref|YP_007097977.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428018356|gb|AFY94450.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 297
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW++V I+ E I+++ T N GG+ +G+R F+P+++L+ R
Sbjct: 93 GQVTLSKRQLQVRYAWNQVGDIQSNKESIQLRVTGVNKGGVTVNFQGIRGFIPRSQLVER 152
>gi|218245301|ref|YP_002370672.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
gi|257058336|ref|YP_003136224.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 8802]
gi|218165779|gb|ACK64516.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256588502|gb|ACU99388.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 302
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW +V +I + + ++++ N GG++ +EGLR F+P++ LL +
Sbjct: 96 GQVKLSCRQLQLQQAWEKVAEIAETGKTVQMRVIGTNKGGVIGDVEGLRGFIPRSHLLEK 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|59802964|sp|P46228.4|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
Length = 307
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|414079272|ref|YP_007000696.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413972551|gb|AFW96639.1| 30S ribosomal protein S1 [Anabaena sp. 90]
Length = 355
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|440684481|ref|YP_007159276.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
gi|428681600|gb|AFZ60366.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
Length = 359
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428780280|ref|YP_007172066.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428694559|gb|AFZ50709.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 398
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|427717194|ref|YP_007065188.1| 30S ribosomal protein S1P [Calothrix sp. PCC 7507]
gi|427349630|gb|AFY32354.1| SSU ribosomal protein S1P [Calothrix sp. PCC 7507]
Length = 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 325
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|255085236|ref|XP_002505049.1| predicted protein [Micromonas sp. RCC299]
gi|226520318|gb|ACO66307.1| predicted protein [Micromonas sp. RCC299]
Length = 387
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS R++ + AW+R R+++ +E + N GGLL +E LR F+P++ + R
Sbjct: 149 GSLTLSVRKIQLEAAWNRCREMQANDEAVNSVVLSVNRGGLLVEVEHLRGFVPQSHIAMR 208
Query: 332 VNNFTEL 338
V N EL
Sbjct: 209 VPNRDEL 215
>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
Length = 307
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 343
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|56750057|ref|YP_170758.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
gi|81300400|ref|YP_400608.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
gi|3122813|sp|O33698.1|RS1_SYNE7 RecName: Full=30S ribosomal protein S1
gi|2570205|gb|AAB82045.1| ribosomal protein S1 of 30S ribosome [Synechococcus elongatus PCC
7942]
gi|7328457|dbj|BAA92864.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
gi|22002498|gb|AAM82650.1| ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|56685016|dbj|BAD78238.1| nucleic acid binding protein [Synechococcus elongatus PCC 6301]
gi|81169281|gb|ABB57621.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
Length = 295
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G+ +S R L + AW RV ++++ + ++VK T N GG+ +EGLRAF+P++ L
Sbjct: 90 GQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHL 146
>gi|434404514|ref|YP_007147399.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428258769|gb|AFZ24719.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 378
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|427710313|ref|YP_007052690.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427362818|gb|AFY45540.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 358
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|427737703|ref|YP_007057247.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427372744|gb|AFY56700.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|443311823|ref|ZP_21041447.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
gi|442778223|gb|ELR88492.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
Length = 331
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428298667|ref|YP_007136973.1| 30S ribosomal protein S1P [Calothrix sp. PCC 6303]
gi|428235211|gb|AFZ01001.1| SSU ribosomal protein S1P [Calothrix sp. PCC 6303]
Length = 356
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|17228573|ref|NP_485121.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17130424|dbj|BAB73035.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 305
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L W ++ Q+K+ ++P++VK T N GG+ ++ LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEINHIWEKLAQMKENSQPVDVKVTGVNKGGVTVDVQSLRGFIPRSHLTER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|428770655|ref|YP_007162445.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684934|gb|AFZ54401.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 346
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L R+EGLR F+P + + ++
Sbjct: 95 GQLTLSIRRIEYMRAWQRVRQLQEEDATVYSNVFATNRGGALVRVEGLRGFIPGSHISAK 154
>gi|75909936|ref|YP_324232.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75703661|gb|ABA23337.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 302
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L W ++ Q+K+ ++P++VK T N GG+ ++ LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEINHIWEKLAQMKENSQPVDVKVTGVNKGGVTVDVQSLRGFIPRSHLTER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|354568686|ref|ZP_08987849.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353539940|gb|EHC09420.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 337
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|428210328|ref|YP_007094681.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428012249|gb|AFY90812.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 356
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQNEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|170077576|ref|YP_001734214.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
gi|169885245|gb|ACA98958.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
Length = 326
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|300869072|ref|ZP_07113673.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300332929|emb|CBN58869.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
LS R L R++AW RVRQ++ N + N GG +IEGLR F+P + + +
Sbjct: 112 LSIRELERRIAWERVRQMQAENVTVYATVYAMNPGGASVKIEGLRGFIPSSHICT 166
>gi|87302523|ref|ZP_01085340.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
gi|87282867|gb|EAQ74824.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
Length = 403
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 246 GGSGPG-RPVVETGTVLFAEVLGRTLSGRPL---------------LSTRRLFRKMAWHR 289
GG PG P E G + + R G+P+ +S R L + +W +
Sbjct: 151 GGKAPGFMPKAEAGLGVIGNLKERFPKGQPVEVLVTREQNADGMVTISARALALRQSWEK 210
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
V+Q++ + ++VK + +N GG+ +EGLR F+P+++L + N+
Sbjct: 211 VKQLEAAGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQNGENH 255
>gi|428769893|ref|YP_007161683.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684172|gb|AFZ53639.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 300
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 59/175 (33%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-----------DLLGTMLTKEVLPLYDKEMDFL 216
Y K GD V G V + + + V++G D G+ KEVLPL ++E DF+
Sbjct: 31 YHFKQGDVVRGKVFEYSSDGVYVDIGGKSPGFVPQTEVDWRGSSNVKEVLPL-EQEFDFV 89
Query: 217 LCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLL 276
I+K+ DA G+ L
Sbjct: 90 ------------------IIKEQDA-----------------------------EGQVKL 102
Query: 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
S R+LF AW +++I++ +++ T N GG+ ++GL+ F+PK+ L +
Sbjct: 103 SRRQLFIDQAWDNLKEIEEKGAIVQMLVTGVNRGGVFGEVQGLKGFIPKSHLTQK 157
>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 343
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 341
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 375
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|443321178|ref|ZP_21050240.1| ribosomal protein S1 [Gloeocapsa sp. PCC 73106]
gi|442789096|gb|ELR98767.1| ribosomal protein S1 [Gloeocapsa sp. PCC 73106]
Length = 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R+L + AW R+ ++K+ E +E+ + N GG+ IEGLR F+P++ L+ +
Sbjct: 103 GQITVSLRQLAMQHAWERLAEVKENGETVEMFVSGTNKGGVTGEIEGLRCFIPRSHLVQK 162
Query: 332 VNNFTEL 338
NN L
Sbjct: 163 -NNLESL 168
>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 392
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|427722325|ref|YP_007069602.1| 30S ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
gi|427354045|gb|AFY36768.1| SSU ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
Length = 327
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 284
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ L+S +R+ K AW +V + + ++ +E K N GG + +EGLRAFLP + L
Sbjct: 85 NGQLLVSIKRIEYKKAWEKVLSMAEEDQILEAKVIAVNRGGAICLVEGLRAFLPGSHLTG 144
Query: 331 RV 332
++
Sbjct: 145 QL 146
>gi|303282543|ref|XP_003060563.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458034|gb|EEH55332.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 343
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS R++ + AW+R R+++ +E + + N GGLL +E LR F+P++ + R N
Sbjct: 106 LSVRKIQLEAAWNRCREMQAADEAVSAEVLSVNRGGLLVEVEHLRGFVPQSHIAIRTPNR 165
Query: 336 TEL 338
+L
Sbjct: 166 EDL 168
>gi|411117376|ref|ZP_11389863.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713479|gb|EKQ70980.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 331
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|406927465|gb|EKD63494.1| RNA binding S1 protein [uncultured bacterium]
Length = 376
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 39/159 (24%)
Query: 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMV 229
P PG + G V+S +++++ +++G + G + KEV KD+ + +
Sbjct: 22 PIPGKLIDGTVISLSKSRILIDIGGVITGLITGKEV----------------KDSLDTIK 65
Query: 230 RGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
K+G D I+ S VL E G +LS RR ++ +W R
Sbjct: 66 NLKVG-----DTISAS--------------VLEVE----NEEGYAVLSLRRASQEKSWQR 102
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+ N IEV+ E N GGLL I+G++ F+P ++L
Sbjct: 103 FADAYENNNIIEVRPNEANKGGLLLEIDGIKGFIPVSQL 141
>gi|427732442|ref|YP_007078679.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427368361|gb|AFY51082.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 344
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|443478405|ref|ZP_21068163.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
gi|443016312|gb|ELS31002.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
Length = 342
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 96 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLIFATNRGGALVRIEGLRGFIPGSHISTR 155
>gi|254415806|ref|ZP_05029564.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196177512|gb|EDX72518.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 323
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
>gi|428314208|ref|YP_007125185.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428255820|gb|AFZ21779.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 339
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|443322096|ref|ZP_21051130.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
gi|442788220|gb|ELR97919.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
Length = 344
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSLRRIEYMRAWERVRQLQTEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 154
>gi|427734242|ref|YP_007053786.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427369283|gb|AFY53239.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 304
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +V+GK+ + D A GG R V++
Sbjct: 17 MDDFAAALEKHDYQFQKGQVVKGKVFQIDPDGAYVDIGGKSSAFIPRHEAALREVIDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VL F V + G+ +S R+L + W ++ ++++ + ++V+ N GG+
Sbjct: 77 VLPLHEELEFLIVQEQNAEGQVTISRRQLEMRQIWEKLLEMQETTKSVDVQVMNANKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELK 339
+ GLR F+P++ LL R NN LK
Sbjct: 137 TVDLLGLRGFIPRSHLLER-NNLEALK 162
>gi|172036568|ref|YP_001803069.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|354553347|ref|ZP_08972654.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|171698022|gb|ACB51003.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|353555177|gb|EHC24566.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 302
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Query: 212 EMDFLLCDLKKDAEEF--------MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVL- 261
++ F + D K +++ ++RGK+ DD A GG G P+ E
Sbjct: 12 QISFSMDDFSKALDQYDYKCEKGQVIRGKVIQHTDDGAFVDIGGKSAGFVPINEVDLQSR 71
Query: 262 --FAEVL------------GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
AE+L + G+ LS R+L K AW V + ++ ++++ T
Sbjct: 72 PNLAEILPLDEEREFLVISEQNAEGQVKLSRRQLQLKEAWENVAESAEMGHSVQMRVTRT 131
Query: 308 NTGGLLTRIEGLRAFLPKAELLSR 331
N GG++ +EGL+ F+P++ LL +
Sbjct: 132 NKGGVVGEVEGLQGFIPRSHLLEK 155
>gi|428223760|ref|YP_007107857.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427983661|gb|AFY64805.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 302
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RRL W R+ +++ NE I V+ + N GG+ +GLR F+P+++L+ R
Sbjct: 96 GQVTLSVRRLELNRVWERLAEMQTNNETIAVRVSGVNKGGVTADAQGLRGFIPRSQLVER 155
>gi|254424866|ref|ZP_05038584.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
gi|196192355|gb|EDX87319.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
Length = 304
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 201 LTKEVLPLYDKEMDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSG----PGR 252
LT E+ PL+ E DF L++ +F ++ GK+ + D A GG P +
Sbjct: 7 LTWEISPLFSAE-DFAKA-LEQQDYQFSRGSVITGKVETHESDGAYVDIGGKSAAFLPTK 64
Query: 253 PVVETGTVLFAEVL------------GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPI 300
+L E+L + +G+ ++S R + K W R+R+ ++ + +
Sbjct: 65 EASIDSDILLEEILPIGTERKFLIIRDQDANGQLVISIRAMEIKELWERLRERQENGDVL 124
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTEL 338
EV + N GG+ + GLRAF+P++ L RV + L
Sbjct: 125 EVTISGSNKGGVTADVSGLRAFIPRSHLARRVEDLDTL 162
>gi|403746310|ref|ZP_10954843.1| RNA binding S1 domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120641|gb|EJY54995.1| RNA binding S1 domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
Length = 393
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG+ LS RR + AW+R++++ EPIEV+ + GGL+ + G+RAF+P A L+
Sbjct: 85 SGQVTLSKRRAEQASAWNRMQELLASGEPIEVEIRDVVKGGLVADV-GVRAFIP-ASLVD 142
Query: 331 R--VNNFTELKEK 341
R V N E K K
Sbjct: 143 RRFVENLDEFKGK 155
>gi|443319276|ref|ZP_21048510.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442781103|gb|ELR91209.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 291
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
GR LLS RRL + W ++ Q + I + T N GG++ +EGLR F+P++ L
Sbjct: 84 GRVLLSIRRLLVQQLWEKLTQQQSDGILISTRVTGINKGGVIVDVEGLRGFVPRSHL 140
>gi|443327239|ref|ZP_21055869.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442793178|gb|ELS02635.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 299
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFAEV-- 265
MD L+K EF +V+GK+ + A GG PG P ET + ++
Sbjct: 16 MDDFAKALEKYDYEFAKGQIVKGKVVQYDSEGAYIDIGGKCPGFVPTRETALQVVEDIAD 75
Query: 266 ---LG----------RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
LG + G+ LS R++ + AW +V +I + ++ +++ T N GG+
Sbjct: 76 IIPLGEEFEFLIIQEQNADGQVTLSRRQMQLQDAWDKVTEISESSKSTQIRVTGVNKGGI 135
Query: 313 LTRIEGLRAFLPKAELLSRVN 333
+EGLR F+P++ L R N
Sbjct: 136 TGDVEGLRGFIPRSHLRQRDN 156
>gi|51209897|ref|YP_063561.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
gi|50657651|gb|AAT79636.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
Length = 265
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
LLS +RL AW R++Q++ + V +N GG+LT +EGL +F+P++ L+
Sbjct: 94 LLSIKRLDYIKAWKRIKQLETEEIILHVPLINFNKGGILTALEGLHSFIPRSHLI 148
>gi|30692346|ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 416
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 221
>gi|427701380|ref|YP_007044602.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427344548|gb|AFY27261.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 395
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +VRQ+++ + ++V+ +N GG+ +EGLR F+P+++L
Sbjct: 189 ISARALALRQSWEKVRQLEKEGKVVQVRVNGFNRGGVTCDLEGLRGFIPRSQL 241
>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
Length = 416
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 221
>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
Length = 378
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 221
>gi|428206841|ref|YP_007091194.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428008762|gb|AFY87325.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 300
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W R+ Q+++ + ++V+ T N GG+ + GLR F+P++ L+ +
Sbjct: 95 GQVTLSRRQLEIQHIWERIEQMQENRQTVQVRVTGANKGGVTVDVLGLRGFIPRSHLVEK 154
Query: 332 VN 333
N
Sbjct: 155 EN 156
>gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 448
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +VR +++ + I+VK +N GG+ +EGLR F+P+++L
Sbjct: 242 ISARALALRQSWEKVRALEKEGKVIQVKVNGFNHGGITCDVEGLRGFVPRSQL 294
>gi|11465811|ref|NP_053955.1| ribosomal protein S1 [Porphyra purpurea]
gi|1710701|sp|P51345.1|RR1_PORPU RecName: Full=30S ribosomal protein S1, chloroplastic
gi|1276811|gb|AAC08231.1| 30S ribosomal protein S1 (chloroplast) [Porphyra purpurea]
Length = 263
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + ++V+ +N GG++ +EG+ F+P + L
Sbjct: 88 SRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHL-- 145
Query: 331 RVNNFTE 337
NNF++
Sbjct: 146 --NNFSK 150
>gi|113954120|ref|YP_731196.1| ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113881471|gb|ABI46429.1| Ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 401
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S R L + +W +V+Q+++ +VK T +N GG+ +EGLR F+P+++L
Sbjct: 191 GMVTISCRALALRQSWDKVKQLEKDGRVSQVKVTGFNRGGVTCDLEGLRGFIPRSQLQDG 250
Query: 332 VNNFT 336
N+ T
Sbjct: 251 ENHET 255
>gi|325283658|ref|YP_004256199.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
gi|324315467|gb|ADY26582.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
Length = 610
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 39/180 (21%)
Query: 160 EDKVSVEYYEPKP---GDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFL 216
ED ++ E EP+ GD V G VV + V++GA + G ++PL
Sbjct: 55 EDVLASEAQEPQNVNRGDIVDGTVVFIGSEGIAVDIGAKVEG------IVPLTQ------ 102
Query: 217 LCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLL 276
L D AEE + K G D+I T V T +G+ +L
Sbjct: 103 LGDEPMTAEEAQAQYKPG-----DSI----------------TTYVVRV--DTNTGQIVL 139
Query: 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNF 335
S +R + W + ++++ + EV+ E GGL+ ++EG+RAFLP +++ RVN+
Sbjct: 140 SKKRADQNKGWRVLEKMQEEGQTFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVNDL 199
>gi|443311120|ref|ZP_21040754.1| ribosomal protein S1 [Synechocystis sp. PCC 7509]
gi|442778868|gb|ELR89127.1| ribosomal protein S1 [Synechocystis sp. PCC 7509]
Length = 299
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R+L + W R+ +++ ++ ++V+ T N GG+ ++G+R F+P++ LL R
Sbjct: 96 GQVTVSRRQLEVQQIWQRLTDMQENSQTLQVRVTGVNKGGVTVDVQGVRGFIPRSHLLER 155
Query: 332 VNNFTELK 339
+N LK
Sbjct: 156 -DNLDSLK 162
>gi|397620579|gb|EJK65790.1| hypothetical protein THAOC_13316, partial [Thalassiosira oceanica]
Length = 372
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ L+S RR+ + AW +V + +E + + N GG + +EGLRAFLP + L
Sbjct: 126 NGQLLVSVRRIEYRQAWDKVVAKRDTDEVFDAECVSVNRGGAIFLVEGLRAFLPGSHLTG 185
Query: 331 RV 332
R+
Sbjct: 186 RL 187
>gi|32307552|gb|AAP79181.1| ribosomal protein rpS1 [Bigelowiella natans]
Length = 419
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 269 TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
T++ +LS +R+ AW RVRQ+ +L+ + K N GG + ++ L+ FLP +++
Sbjct: 190 TMASDVVLSIKRMLIPTAWTRVRQMAELDVTLSGKILSHNRGGFIIEVDSLQGFLPFSQM 249
Query: 329 LSRVN 333
+ V+
Sbjct: 250 ATSVD 254
>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 186
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 12 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 68
>gi|352094717|ref|ZP_08955888.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351681057|gb|EHA64189.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 433
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V+Q+++ +VK T +N GG+ +EGLR F+P+++L
Sbjct: 223 GMVTISCRALALRQSWDKVKQLEKEGRVSQVKVTGFNRGGVTCDLEGLRGFIPRSQL 279
>gi|154359306|gb|ABS79675.1| At5g30510-like protein [Arabidopsis halleri subsp. halleri]
Length = 175
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 7 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 63
>gi|123965829|ref|YP_001010910.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
str. MIT 9515]
gi|123200195|gb|ABM71803.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9515]
Length = 408
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
++GK+ ++ D GG PG P E G + EVL + G
Sbjct: 137 IKGKIIALESDGLYVDIGGKAPGFMPKKECGLGVITNFKEKFPIGLEMEVLVIKEQNADG 196
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S+R L + +W +V + E I+V +N GGL ++GLR F+P+++L
Sbjct: 197 MVTISSRALILRQSWEKVENSAKNGELIQVSINGFNRGGLTCDVDGLRGFIPRSQL 252
>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
Length = 287
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ L+S RR+ + AW +V + +E E + N GG + +EGLRAFLP + L
Sbjct: 85 NGQLLVSIRRIQYREAWDKVIAKQDSDEVFEAECVSVNRGGAIFLVEGLRAFLPGSHLTG 144
Query: 331 RV 332
R+
Sbjct: 145 RL 146
>gi|154359360|gb|ABS79702.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 176
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 7 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 63
>gi|154359308|gb|ABS79676.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359310|gb|ABS79677.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359312|gb|ABS79678.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359314|gb|ABS79679.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359316|gb|ABS79680.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359318|gb|ABS79681.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359320|gb|ABS79682.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359322|gb|ABS79683.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359324|gb|ABS79684.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359326|gb|ABS79685.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359328|gb|ABS79686.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359330|gb|ABS79687.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359332|gb|ABS79688.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359334|gb|ABS79689.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359336|gb|ABS79690.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359338|gb|ABS79691.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359340|gb|ABS79692.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359342|gb|ABS79693.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359344|gb|ABS79694.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359346|gb|ABS79695.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359348|gb|ABS79696.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359350|gb|ABS79697.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359352|gb|ABS79698.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359358|gb|ABS79701.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359362|gb|ABS79703.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359364|gb|ABS79704.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359366|gb|ABS79705.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359368|gb|ABS79706.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359370|gb|ABS79707.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359372|gb|ABS79708.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 4 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 60
>gi|428171104|gb|EKX40024.1| ribosomal protein S1, chloroplastic [Guillardia theta CCMP2712]
Length = 404
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G +G+ LS R+L AW RVRQI+ + I + N GG L EGLR
Sbjct: 163 FQIISGEDENGQVRLSIRKLEFARAWERVRQIQAEDCTIMAEILSINRGGALINFEGLRG 222
Query: 322 FLP 324
FLP
Sbjct: 223 FLP 225
>gi|291294513|ref|YP_003505911.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM
1279]
gi|290469472|gb|ADD26891.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279]
Length = 558
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ +LS +R +W +++ + + EP+ V+ E GGL+ IEGLRAFLP +++ L
Sbjct: 102 NGQVVLSKKRAEADQSWVKIQALYEQGEPVMVQVKEKVKGGLVATIEGLRAFLPASQVDL 161
Query: 330 SRVNNFTE 337
R + E
Sbjct: 162 KRTPDLDE 169
>gi|409991308|ref|ZP_11274581.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
str. Paraca]
gi|291567299|dbj|BAI89571.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
gi|409937828|gb|EKN79219.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
str. Paraca]
Length = 294
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + AW + + + +E ++V+ T N GG+ ++ LR F+P++ LL R
Sbjct: 90 GQVLLSLRQLQVEKAWDNLSETSENSESLQVRVTGVNRGGVTVDVDCLRGFIPRSHLLDR 149
Query: 332 VN 333
N
Sbjct: 150 EN 151
>gi|378787382|gb|AFC40013.1| ribosomal protein S1 [Porphyra umbilicalis]
Length = 263
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + ++V+ +N GG++ +EG+ F+P + L S
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNS 147
Query: 331 ------RVNNFTELK 339
N F +LK
Sbjct: 148 FHQNTPSTNKFIKLK 162
>gi|356532488|ref|XP_003534804.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 402
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS R + +AW R RQ+K + ++ K N GGL+ ++EGL+ F+P +++ S+
Sbjct: 153 ILSLRSIQYDIAWERCRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISSK 209
>gi|427730177|ref|YP_007076414.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427366096|gb|AFY48817.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 301
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W ++ Q+++ ++ +EV+ T N GG+ ++ LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEIQHIWDKLAQMQENSQTVEVRVTGVNKGGVTVDLQSLRGFIPRSHLAER 155
Query: 332 VNNFTELKEK 341
+N LK K
Sbjct: 156 -DNLEALKGK 164
>gi|414076582|ref|YP_006995900.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413969998|gb|AFW94087.1| ribosomal protein S1 [Anabaena sp. 90]
Length = 300
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +VRGK+ V D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQVVRGKIFQVDHDGAYVDIGGKSSAFLPQEEASLRAVTDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
+L F + + G+ +S ++L + W ++ +I++ ++ ++V+ T N GG+
Sbjct: 77 ILPMDEELEFLIIRDQDAEGQVTISRKQLEMRQIWEKLAEIQENSQTVQVRVTGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELK 339
+ GLR F+P++ L R +N LK
Sbjct: 137 TVDLFGLRGFIPRSHLSER-DNLDALK 162
>gi|428307313|ref|YP_007144138.1| RNA binding S1 domain-containing protein [Crinalium epipsammum PCC
9333]
gi|428248848|gb|AFZ14628.1| RNA binding S1 domain protein [Crinalium epipsammum PCC 9333]
Length = 300
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K AW + +++ + ++V+ + N GG+ +G+R F+P++ L+ R
Sbjct: 96 GQVTLSRRQLQIKHAWDSIAEMQDNKQSVQVRVSGVNKGGVTVDFQGVRGFIPRSHLIDR 155
Query: 332 VN 333
N
Sbjct: 156 EN 157
>gi|356558105|ref|XP_003547348.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 399
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS R + +AW R RQ+K + ++ K N GGL+ ++EGL+ F+P +++ S+
Sbjct: 150 ILSLRSIQYDIAWERCRQLKAEDAVVKGKVINANKGGLVAQVEGLKGFVPFSQISSK 206
>gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 424
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +VR +++ + ++VK +N GG+ +EGLR F+P+++L
Sbjct: 218 VSARALALRQSWEKVRALEKEGKVLQVKVNGFNRGGVTADVEGLRGFIPRSQL 270
>gi|133872|sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
Full=CS1; Flags: Precursor
gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
Length = 411
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R++ ++AW R RQ++ + ++ K N GG++ +EGLR F+P +++ S+ ++
Sbjct: 162 ILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSK-SS 220
Query: 335 FTELKEK 341
EL EK
Sbjct: 221 AEELLEK 227
>gi|320451423|ref|YP_004203519.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
gi|320151592|gb|ADW22970.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
Length = 539
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +R+ W R+R++ + EP+ V E GG++ ++G+ AF+P ++L L
Sbjct: 102 TGQVLLSRKRVEATEHWDRIRELYEKGEPVTVTVKEKVKGGVVADLDGVSAFIPASQLDL 161
Query: 330 SRVNNF 335
R+ N
Sbjct: 162 KRIPNL 167
>gi|86608329|ref|YP_477091.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 304
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETG-------TVLF-----AE--VLGRTLSG 272
+V+G++ ++D A+ GG P P+ E G + LF AE +L G
Sbjct: 35 VVQGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRPGEDLSALFPLKTEAEFLILREDAEG 94
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+ +LS RRL K W + Q + + + V N GG++ ++GLR F+P++ L R
Sbjct: 95 QIVLSARRLRLKRLWEELAQKQANGQTVTVPVIATNKGGVVVDVQGLRGFIPRSHLSQR 153
>gi|313678983|ref|YP_004056722.1| 30S ribosomal protein s1 [Oceanithermus profundus DSM 14977]
gi|313151698|gb|ADR35549.1| SSU ribosomal protein S1P [Oceanithermus profundus DSM 14977]
Length = 597
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R AW ++ ++ + EP+EV E GGL+ +EG+RAF+P +++ + RV
Sbjct: 152 ILSKKRAEADKAWRKIVELAEKGEPVEVTVREKVRGGLVAYLEGVRAFIPASQVDIKRVA 211
Query: 334 NFTEL 338
E
Sbjct: 212 ELDEF 216
>gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 403
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V+Q+++ + +VK + +N GG+ +EGLR F+P+++L
Sbjct: 193 GMVTISCRALALRQSWDKVKQLEKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQL 249
>gi|33239981|ref|NP_874923.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237507|gb|AAP99575.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 417
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V Q+ + + +EVK +N GG+ +EGLR F+P+++L
Sbjct: 207 GMVTISCRALALRKSWDKVIQLAKEAKVVEVKLNGFNRGGVTCDLEGLRGFIPRSQL 263
>gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
Length = 430
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V+Q+++ + +VK + +N GG+ +EGLR F+P+++L
Sbjct: 224 ISCRALALRQSWDKVKQLEKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQL 276
>gi|209522969|ref|ZP_03271526.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|423062381|ref|ZP_17051171.1| 30S ribosomal protein S1 [Arthrospira platensis C1]
gi|209496556|gb|EDZ96854.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|406716289|gb|EKD11440.1| 30S ribosomal protein S1 [Arthrospira platensis C1]
Length = 294
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + AW + +I + +E ++V T N GG+ + LR F+P++ LL R
Sbjct: 90 GQVLLSLRKLQVEKAWDHLSEISENSESLQVVVTGVNRGGVTVDADCLRGFIPRSHLLVR 149
Query: 332 VN 333
N
Sbjct: 150 DN 151
>gi|428213063|ref|YP_007086207.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001444|gb|AFY82287.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 336
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R++ + W + Q+++ NE + V+ N GG+ +EGLR F+P++ L R
Sbjct: 128 GQVKVSIRQMELRKVWEHLAQVQENNESVPVRVIGVNKGGVTVNVEGLRGFIPRSHLSER 187
Query: 332 VN 333
N
Sbjct: 188 GN 189
>gi|320334056|ref|YP_004170767.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis
DSM 21211]
gi|319755345|gb|ADV67102.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211]
Length = 557
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ +LS +R + W + ++ +EP +V E GGL+ +I+G+RAFLP +++
Sbjct: 112 NGQIVLSKKRADQDKGWRVLADMQAKDEPFQVDIIEKVRGGLVAQIDGIRAFLPASQVDT 171
Query: 330 SRVNNF 335
RVN+
Sbjct: 172 RRVNDL 177
>gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|355625904|ref|ZP_09048460.1| hypothetical protein HMPREF1020_02539 [Clostridium sp. 7_3_54FAA]
gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|354821131|gb|EHF05527.1| hypothetical protein HMPREF1020_02539 [Clostridium sp. 7_3_54FAA]
Length = 337
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +LS + KMAW R+R + + + VK TE G + +IEG+R F+P + L
Sbjct: 124 GNIVLSMKEANDKMAWDRLRTMLEERTVVPVKITEIVNSGAIAQIEGMRGFIPASRL 180
>gi|254430923|ref|ZP_05044626.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
gi|197625376|gb|EDY37935.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
Length = 422
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +VR +++ + ++VK +N GG+ +EGLR F+P+++L
Sbjct: 216 VSARALALRQSWEKVRVLEKEGKVVQVKVNGFNRGGVTCDLEGLRGFIPRSQL 268
>gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
Length = 337
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +LS + KMAW R+R + + + VK TE G + +IEG+R F+P + L
Sbjct: 124 GNIVLSMKEANDKMAWDRLRTMLEERTVVPVKITEIVNSGAIAQIEGMRGFIPASRL 180
>gi|46200126|ref|YP_005793.1| 30S ribosomal protein S1 [Thermus thermophilus HB27]
gi|46197754|gb|AAS82166.1| SSU ribosomal protein S1P [Thermus thermophilus HB27]
Length = 536
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ + W R++++ + EP+ V E GG++ ++G++ F+P ++L L
Sbjct: 96 TGQILLSRKKIEAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAELDGIQGFMPASQLDL 155
Query: 330 SRVNNFTEL 338
RV N E
Sbjct: 156 RRVPNLDEF 164
>gi|428319922|ref|YP_007117804.1| RNA binding S1 domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428243602|gb|AFZ09388.1| RNA binding S1 domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 299
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 39/62 (62%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW + ++++ + ++V+ + N GG+ ++G+R F+P++ L+ R
Sbjct: 96 GQVTLSLRQLQIQQAWEDLIELQETGKVLQVRVSGANKGGVTVDVQGMRGFIPRSHLVDR 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|30141902|emb|CAD30282.1| 30S ribosomal protein S1 [Thermus thermophilus HB27]
Length = 536
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ + W R++++ + EP+ V E GG++ ++G++ F+P ++L L
Sbjct: 96 TGQILLSRKKIEAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAELDGIQGFMPASQLDL 155
Query: 330 SRVNNFTEL 338
RV N E
Sbjct: 156 RRVPNLDEF 164
>gi|170078958|ref|YP_001735596.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
gi|169886627|gb|ACB00341.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
Length = 296
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V F V G+ G+ LS R+L + W + Q + ++++ T N GG+ I+GL
Sbjct: 80 VEFLIVRGQNAEGQVTLSRRKLAEQRVWEDLAQAAEAGNSVQMRVTGSNRGGVTGDIQGL 139
Query: 320 RAFLPKAELLSR 331
R F+P + L+ +
Sbjct: 140 RGFIPNSHLVDK 151
>gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell
isolate TM7c]
Length = 358
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 34/154 (22%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET 257
G ++T +VL L E+ L DL F+ R ++G ++ +S G VV+T
Sbjct: 25 GEVVTGKVLSLKKHEV---LIDLGAQGVGFVPRREVGFSRN-----ISEGDEVSASVVDT 76
Query: 258 GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
+G LLS R+ + W V + E I+++ + N GGLL E
Sbjct: 77 ----------ELENGMSLLSLRKAVKDRGWEEVSARLESGEVIDIQPYDANRGGLLVEYE 126
Query: 318 GLRAFLP----------------KAELLSRVNNF 335
G+R FLP K E+L R+NN
Sbjct: 127 GVRGFLPVSQLSAEHYPRVGSSDKDEILQRLNNL 160
>gi|376001762|ref|ZP_09779618.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375329874|emb|CCE15371.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 294
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + AW + +I + +E ++V T N GG+ + LR F+P++ LL R
Sbjct: 90 GQVLLSLRKLQVEKAWDNLSEIAENSESLQVVVTGVNRGGVTVDADCLRGFIPRSHLLVR 149
Query: 332 VN 333
N
Sbjct: 150 DN 151
>gi|381189748|ref|ZP_09897273.1| 30S ribosomal protein S1 [Thermus sp. RL]
gi|380452325|gb|EIA39924.1| 30S ribosomal protein S1 [Thermus sp. RL]
Length = 536
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ + W R++++ + EP+ V E GG++ ++G++ F+P ++L L
Sbjct: 96 TGQILLSRKKIEAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAELDGVQGFMPASQLDL 155
Query: 330 SRVNNFTEL 338
RV N E
Sbjct: 156 RRVPNLDEF 164
>gi|356519893|ref|XP_003528603.1| PREDICTED: LOW QUALITY PROTEIN: 30S ribosomal protein S1,
chloroplastic-like [Glycine max]
Length = 295
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R L +AW R RQ++ + ++ K N GG++ +EGLR F+P ++ +S +N
Sbjct: 71 VLSLRALQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVPLSQ-ISTNSN 129
Query: 335 FTELKEK 341
EL +K
Sbjct: 130 VEELLDK 136
>gi|384430427|ref|YP_005639787.1| RNA binding S1 domain-containing protein [Thermus thermophilus
SG0.5JP17-16]
gi|333965895|gb|AEG32660.1| RNA binding S1 domain protein [Thermus thermophilus SG0.5JP17-16]
Length = 536
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ + W R++++ + EP+ V E GG++ ++G++ F+P ++L L
Sbjct: 96 TGQILLSRKKIEAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAELDGVQGFMPASQLDL 155
Query: 330 SRVNNFTEL 338
RV N E
Sbjct: 156 RRVPNLDEF 164
>gi|116075332|ref|ZP_01472592.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
gi|116067529|gb|EAU73283.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
Length = 439
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+S R L + +W +V+ +++ + ++VK + +N GG+ +EGLR F+P+++L N+
Sbjct: 233 ISCRALALRQSWDKVKVLEKEGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGENH 291
>gi|55980131|ref|YP_143428.1| 30S ribosomal protein S1 [Thermus thermophilus HB8]
gi|386359701|ref|YP_006057946.1| 30S ribosomal protein S1 [Thermus thermophilus JL-18]
gi|55771544|dbj|BAD69985.1| 30S ribosomal protein S1 [Thermus thermophilus HB8]
gi|383508728|gb|AFH38160.1| ribosomal protein S1 [Thermus thermophilus JL-18]
Length = 536
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ + W R++++ + EP+ V E GG++ ++G++ F+P ++L L
Sbjct: 96 TGQILLSRKKIEAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAELDGVQGFMPASQLDL 155
Query: 330 SRVNNFTEL 338
RV N E
Sbjct: 156 RRVPNLDEF 164
>gi|358248430|ref|NP_001239880.1| uncharacterized protein LOC100812847 [Glycine max]
gi|255635364|gb|ACU18035.1| unknown [Glycine max]
Length = 412
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R L +AW R RQ++ + ++ K N GG++ +EGLR F+P ++ +S +N
Sbjct: 163 VLSLRSLQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVPLSQ-ISTNSN 221
Query: 335 FTELKEK 341
EL +K
Sbjct: 222 VEELLDK 228
>gi|406980774|gb|EKE02336.1| hypothetical protein ACD_20C00399G0021 [uncultured bacterium]
Length = 369
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G+ LS +R+ + +W + Q++Q E IE K GG+L ++ GLR F+P ++L
Sbjct: 94 GQLTLSLKRVSQARSWTELEQLRQNEETIETKVISLVKGGVLVKVLGLRGFIPSSQL 150
>gi|428300040|ref|YP_007138346.1| RNA binding S1 domain-containing protein [Calothrix sp. PCC 6303]
gi|428236584|gb|AFZ02374.1| RNA binding S1 domain protein [Calothrix sp. PCC 6303]
Length = 300
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W ++ Q+++ ++ ++ K T N GG+ + GLR F+P++ L R
Sbjct: 96 GQVTLSRRQLEIRHIWEKLIQMQEASQTVQAKVTGVNKGGVNVEVFGLRGFIPRSHLSER 155
Query: 332 VNNFTELK 339
+N LK
Sbjct: 156 -DNLESLK 162
>gi|16330820|ref|NP_441548.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383322562|ref|YP_005383415.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325731|ref|YP_005386584.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491615|ref|YP_005409291.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436882|ref|YP_005651606.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814978|ref|YP_007451430.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500386|sp|P74142.1|RS1B_SYNY3 RecName: Full=30S ribosomal protein S1 homolog B
gi|1653313|dbj|BAA18228.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273914|dbj|BAK50401.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271881|dbj|BAL29400.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275051|dbj|BAL32569.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278221|dbj|BAL35738.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407961822|dbj|BAM55062.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7613]
gi|451780947|gb|AGF51916.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 305
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + +W + ++++ + +E+ T N GG++ +EGLR F+P++ L+ +
Sbjct: 91 GQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHK 150
Query: 332 VN 333
N
Sbjct: 151 DN 152
>gi|406967508|gb|EKD92572.1| RNA binding S1 protein [uncultured bacterium]
Length = 385
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--- 328
G +LS R+ ++ AW R + NE I VK E N GGLL ++G++ F+P ++L
Sbjct: 77 GFVVLSLRKASQERAWRRFLDAYENNEVITVKPNEANKGGLLLEVDGIKGFIPVSQLAPL 136
Query: 329 -LSRVNN------FTELKEKVS 343
RVN F +LK+ +S
Sbjct: 137 HYPRVNGADANLIFDKLKKLIS 158
>gi|33861087|ref|NP_892648.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639819|emb|CAE18989.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 405
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
++GK+ ++ D GG PG P E G + EVL + G
Sbjct: 137 IKGKVIALESDGLYIDIGGKAPGFMPKKECGLGVITNFKEKFTIDLEMEVLVIKEQNADG 196
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V + E I+V +N GGL ++GLR F+P+++L
Sbjct: 197 MVTVSARALILRQSWEKVASSAKNGELIQVTINGFNRGGLTCDVDGLRGFIPRSQL 252
>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 400
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + ++D A+ G T+L V GR
Sbjct: 63 DEILVDIGAKAEGVVPSREMQTLSEEDRAALKVGD----------TILVFVVQSEDKEGR 112
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+LS + ++ +W +++ + E I + +N GGLL ++G+R F+P +++ S
Sbjct: 113 AILSIDKARQEKSWRALQEYYERGEIIYARVKNYNKGGLLVDLDGVRGFVPASQVSS 169
>gi|159903074|ref|YP_001550418.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888250|gb|ABX08464.1| 30S ribosomal protein S1-like protein B, putative Nbp1
[Prochlorococcus marinus str. MIT 9211]
Length = 416
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W V Q+++ + +EV +N GG+ +EGLR F+P+++L
Sbjct: 205 GMVTISCRALVLRKSWETVMQLEKDGKTVEVTINGFNRGGVTCDLEGLRGFIPRSQL 261
>gi|386857548|ref|YP_006261725.1| 30S ribosomal protein S1 [Deinococcus gobiensis I-0]
gi|380001077|gb|AFD26267.1| putative ribosomal protein S1 [Deinococcus gobiensis I-0]
Length = 569
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R + W + ++++ +E EV+ E GGL+ ++EG+RAFLP +++ RVN
Sbjct: 122 VLSKKRADQDKGWRVLEKMQEADEAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 181
Query: 334 NF 335
+
Sbjct: 182 DL 183
>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
Length = 443
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 38/60 (63%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS R ++ W R++++ + IE + +N GGLL ++G+R F+P +++++
Sbjct: 105 AGQAILSIDRARQEKTWRRLQEVFEAGGVIEAEVVNYNKGGLLVNLDGIRGFVPASQVVA 164
>gi|15806981|ref|NP_295706.1| 30S ribosomal protein S1 [Deinococcus radiodurans R1]
gi|6459772|gb|AAF11535.1|AE002036_6 ribosomal protein S1, putative [Deinococcus radiodurans R1]
Length = 629
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R + W + ++++ +E EV+ E GGL+ ++EG+RAFLP +++ RVN
Sbjct: 189 VLSKKRAEQDKGWRVLERMQEADEAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 248
Query: 334 NF 335
+
Sbjct: 249 DL 250
>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
Length = 410
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEGVRGFVPASMIENR 147
>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
Length = 405
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEGVRGFVPASMIENR 147
Query: 332 -VNNFTELK 339
V + + K
Sbjct: 148 FVQDLNQYK 156
>gi|226355432|ref|YP_002785172.1| 30S ribosomal protein S1 [Deinococcus deserti VCD115]
gi|226317422|gb|ACO45418.1| putative ribosomal protein S1 [Deinococcus deserti VCD115]
Length = 576
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R + W + ++++ +E EV E GGL+ ++EG+RAFLP +++ RVN
Sbjct: 128 VLSKKRADQDKGWRVLEKMQEADEAFEVDVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 187
Query: 334 NF 335
+
Sbjct: 188 DL 189
>gi|443475240|ref|ZP_21065196.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019959|gb|ELS33979.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LS RRL K AW +R + ++ E K N+GG++ GLR F+P++ L
Sbjct: 92 GEVKLSVRRLLFKQAWQTLRDYQAESKVFETKVIGTNSGGVIVDSVGLRGFIPRSHL 148
>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
Length = 410
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEGVRGFVPASMIENR 147
>gi|334119758|ref|ZP_08493843.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333457920|gb|EGK86541.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 299
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW + +++ + ++V+ + N GG+ ++G+R F+P++ L+ R
Sbjct: 96 GQVTLSLRQLQIQQAWEDLIDLQETGKVLQVRVSGANKGGVTVDVQGMRGFIPRSHLVER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|94985677|ref|YP_605041.1| 30S ribosomal protein S1 [Deinococcus geothermalis DSM 11300]
gi|94555958|gb|ABF45872.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
Length = 587
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R + W + ++++ +E EV+ E GGL+ ++EG+RAFLP +++ RVN
Sbjct: 139 VLSKKRADQDKGWRVLERMQEQDEAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 198
Query: 334 NF 335
+
Sbjct: 199 DL 200
>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
Length = 405
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEGVRGFVPASMIENR 147
Query: 332 -VNNFTELK 339
V + + K
Sbjct: 148 FVQDLNQYK 156
>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 399
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + ++D A+ G T+L V GR
Sbjct: 62 DEILVDIGAKAEGVIPSREMQTLSEEDRAALKVGD----------TILVFVVQSEDKEGR 111
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--LSR 331
+LS + ++ +W +++ + + I + +N GGLL ++G+R F+P +++ +SR
Sbjct: 112 AILSIDKARQEKSWRALQECYERGDIIYARVKNYNKGGLLVDLDGVRGFVPASQVSSISR 171
Query: 332 VN 333
V+
Sbjct: 172 VS 173
>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
Length = 567
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 268 RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP 324
RT G ++ ++L R+ AW+++ Q ++ P+E E GG IEGL+AFLP
Sbjct: 85 RTPDGMVRVAYKKLQRRRAWNKIEQAQKNKTPLEAYVLERIKGGFAVDIEGLKAFLP 141
>gi|90994536|ref|YP_537026.1| 30S ribosomal protein S1 [Pyropia yezoensis]
gi|90819100|dbj|BAE92469.1| 30S ribosomal protein S1 [Pyropia yezoensis]
Length = 227
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
S + +LS RRL AW R+RQ+ + + V +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHL 145
>gi|125987739|sp|Q1XDE2.2|RR1_PORYE RecName: Full=30S ribosomal protein S1, chloroplastic
Length = 263
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
S + +LS RRL AW R+RQ+ + + V +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHL 145
>gi|428779018|ref|YP_007170804.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428693297|gb|AFZ49447.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 302
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W + + + +P+E+ T N GG+ I GLRAF+P++ +L+
Sbjct: 98 GQVTLSRKQLQEQRVWETLEEYQADKKPVEIVVTGSNRGGVKGEIMGLRAFVPRSHILAS 157
Query: 332 VN 333
N
Sbjct: 158 DN 159
>gi|217072824|gb|ACJ84772.1| unknown [Medicago truncatula]
Length = 186
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS R + ++AW R RQ++ + ++ K + N GG++ +EGL+ F+P +++ ++
Sbjct: 91 ILSLRDIQFELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTK 147
>gi|427706259|ref|YP_007048636.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427358764|gb|AFY41486.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 300
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W ++ Q+++ ++ I+V+ T N GG+ + LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEIQHIWEKLVQMQENSQTIQVRVTGVNKGGVTVDFQSLRGFIPRSHLAER 155
Query: 332 VNNFTELK 339
+N LK
Sbjct: 156 -DNLEALK 162
>gi|78778915|ref|YP_397027.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
gi|78712414|gb|ABB49591.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 404
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 136 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 195
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V + E I+V +N GGL ++GLR F+P+++L
Sbjct: 196 MVTVSARALILRQSWEKVSNSAKNGELIDVLINGFNRGGLTCDVDGLRGFIPRSQL 251
>gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9313]
Length = 421
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+S R L + +W +V+Q+++ + +VK +N GG+ +EGLR F+P+++L + N+
Sbjct: 215 ISCRALELRKSWSKVQQMEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENH 273
>gi|194477334|ref|YP_002049513.1| 30S ribosomal protein S1-like B, putative [Paulinella
chromatophora]
gi|171192341|gb|ACB43303.1| 30S ribosomal protein S1-like B, putative [Paulinella
chromatophora]
Length = 368
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L +W ++ Q+++ + ++VK +N GGL +EGLR F+P ++L
Sbjct: 162 ISARALALHQSWEKLIQLEKDGDSVQVKVNGFNRGGLTCELEGLRGFIPCSQL 214
>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
gi|448823792|ref|YP_007416958.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
gi|448277289|gb|AGE36713.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
Length = 486
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q+K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEQLKENDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|412986743|emb|CCO15169.1| 30S ribosomal protein S1 [Bathycoccus prasinos]
Length = 363
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F V G G LS R++ + AW R RQ + + + + N GG+L +E LR
Sbjct: 126 FEIVKGDDGEGSMTLSVRKIQLEAAWERCRQAQADDLALSSEVLSVNRGGILVEVENLRG 185
Query: 322 FLPKAELLSRV 332
F+P++ L R+
Sbjct: 186 FIPQSHLGPRL 196
>gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3M9]
Length = 423
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W RV+++++ + ++V +N GG+ +EGLR F+P+++L
Sbjct: 217 ISCRALALRKSWERVKEMEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQL 269
>gi|427419513|ref|ZP_18909696.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425762226|gb|EKV03079.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 292
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS R+L K W + + + + ++V T N GG++ +EGLR F+P++ L++
Sbjct: 83 NGQVILSIRKLEIKEVWVHLVEREANKDILDVTVTGTNKGGVIADVEGLRGFVPRSHLVN 142
Query: 331 RVNNFTEL 338
+ T L
Sbjct: 143 PPEDLTTL 150
>gi|282897419|ref|ZP_06305421.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281198071|gb|EFA72965.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 299
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 213 MDFLLCDLKKDAEEFM----VRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F VRGK+ + D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQTVRGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRTVTDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
+L F + + G+ +S R+L + W +V Q+++ ++ I V+ N GG+
Sbjct: 77 ILPLNEEMEFLIIREQDAEGQVTISRRQLEIQHIWEKVAQMQENSQSIPVRVIGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVN 333
+ LR F+PK+ LL R N
Sbjct: 137 NVEVLSLRGFIPKSHLLEREN 157
>gi|302874418|ref|YP_003843051.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
743B]
gi|307690976|ref|ZP_07633422.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
743B]
gi|302577275|gb|ADL51287.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B]
Length = 308
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G+ LLS +L R+ +W ++++ E EV E GG T + G+RAF+P ++L +S
Sbjct: 86 GKILLSKVKLDRESSWDELQRLHNTQEIFEVTVKEAVKGGATTELYGVRAFIPASQLSMS 145
Query: 331 RVNNFTELKEKV 342
V + + KV
Sbjct: 146 YVEDISAFVNKV 157
>gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
Length = 432
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V+++++ + ++V + +N GG+ +EGLR F+P++ L
Sbjct: 222 GMVTISCRALALRKSWDKVKELEKQGKVVQVTISGFNRGGVTCDLEGLRGFIPRSHL 278
>gi|406992913|gb|EKE12168.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 366
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G+ +LS R++ + W + K+ E IEV E N GG++ +G+R FLP ++L
Sbjct: 77 AGQVVLSMRKVSQDTRWKELENRKETGEDIEVVAIEVNRGGVICEWQGIRGFLPASQL 134
>gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9303]
Length = 481
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+S R L + +W +V+Q+++ + +VK +N GG+ +EGLR F+P+++L + N+
Sbjct: 275 ISCRALELRKSWSKVQQMEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENH 333
>gi|295293739|gb|ADF88266.1| RNA-binding S1 domain-containing protein [Aphanizomenon sp. 10E6]
Length = 300
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +VRGK+ V D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQVVRGKVFQVDHDGAYVDIGGKSSAFLPQEEASLRAVADLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VL F + + G+ +S ++L K W ++ ++++ ++ ++V+ T N GG+
Sbjct: 77 VLPMNEELEFLIIRDQDAEGQVTISRKQLEVKQIWEKLLEMQENSQSVQVRVTGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELK 339
+ G+R F+P++ + R +N LK
Sbjct: 137 TVDLLGVRGFIPRSHIAER-DNLEALK 162
>gi|113476121|ref|YP_722182.1| 30S ribosomal protein S1P [Trichodesmium erythraeum IMS101]
gi|110167169|gb|ABG51709.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 304
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS ++L W R+ +++ + +V+ N GG+ I+ LR F+P++ LL+R
Sbjct: 98 GEVLLSIKQLEINQIWERLAELEAGGQSFQVRVIGTNKGGVTVDIQSLRGFVPRSHLLAR 157
Query: 332 VN 333
N
Sbjct: 158 DN 159
>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 486
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 IIDI-GLRGFLPAS 149
>gi|417972279|ref|ZP_12613190.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
gi|344043437|gb|EGV39130.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
Length = 486
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 IIDI-GLRGFLPAS 149
>gi|418245351|ref|ZP_12871758.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
gi|354510759|gb|EHE83681.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
Length = 486
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 IIDI-GLRGFLPAS 149
>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
Length = 487
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q+K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKENDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
gi|385143485|emb|CCH24524.1| 30S ribosomal protein S1 [Corynebacterium glutamicum K051]
Length = 486
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 IIDI-GLRGFLPAS 149
>gi|282900723|ref|ZP_06308665.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281194523|gb|EFA69478.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 299
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +VRGK+ + D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQIVRGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRTVTDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
+L F + + G+ +S R+L + W +V Q+++ ++ I V+ N GG+
Sbjct: 77 ILPLNEEMEFLIIREQDAEGQVTISRRQLEIQHIWEKVAQMQENSQSIPVRVIGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVN 333
+ LR F+PK+ L+ R N
Sbjct: 137 NVEVLSLRGFIPKSHLVEREN 157
>gi|433605055|ref|YP_007037424.1| Non-ribosomal peptide synthetase [Saccharothrix espanaensis DSM
44229]
gi|407882908|emb|CCH30551.1| Non-ribosomal peptide synthetase [Saccharothrix espanaensis DSM
44229]
Length = 4893
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 95/242 (39%), Gaps = 45/242 (18%)
Query: 110 DKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYE 169
D+ +PD + L+F + RD ++ E+G ++ +VG+ VSV
Sbjct: 3390 DRVVLRPDGQ------LEFLERRDHQVKIRGHRIELGEVEAALRAVPEVGDAAVSVG--- 3440
Query: 170 PKPGDF-----VIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDA 224
GD ++G VV+ LD D LG L ++P M L DA
Sbjct: 3441 ---GDHGGHKRLVGYVVAAPGGTLDAQAVRDRLGESLPDYMVP---AAMVVL------DA 3488
Query: 225 EEFMVRGKMG--IVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRT----------LSG 272
GK+ + + D +A + G GP PV E +FAEVLG T L G
Sbjct: 3489 LPLTPNGKVDRKALPEPD-LATTRGRGPRTPVEEILCGVFAEVLGSTEIGVEDDFFDLGG 3547
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LL+TR + RVR + + P+ F GL + G + P + R
Sbjct: 3548 HSLLATRVV------SRVRTVLDVELPVRALFEARTVAGLAKLVAGADSARPALRPVERA 3601
Query: 333 NN 334
+
Sbjct: 3602 GD 3603
>gi|123968121|ref|YP_001008979.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123198231|gb|ABM69872.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. AS9601]
Length = 401
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 133 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 192
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 193 MVTVSARALILRQSWEKVSNSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL 248
>gi|157412946|ref|YP_001483812.1| ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387521|gb|ABV50226.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 400
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 132 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGIITNFKEKFSIGLEMEVLVIKEQNADG 191
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 192 MVTVSARALILRQSWEKVSSSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL 247
>gi|429217902|ref|YP_007179546.1| 30S ribosomal protein S1 [Deinococcus peraridilitoris DSM 19664]
gi|429128765|gb|AFZ65780.1| ribosomal protein S1 [Deinococcus peraridilitoris DSM 19664]
Length = 582
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G +LS +R + W + ++ + P V E GGL+ +IEG+RAFLP +++
Sbjct: 130 NGVIVLSKKRADQDKGWRILADLQAKDSPFTVDIVEKVRGGLVAQIEGIRAFLPASQVDT 189
Query: 330 SRVNNFTEL 338
RVN+ L
Sbjct: 190 RRVNDLDPL 198
>gi|317121948|ref|YP_004101951.1| RNA binding S1 domain-containing protein [Thermaerobacter
marianensis DSM 12885]
gi|315591928|gb|ADU51224.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
12885]
Length = 598
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LLS RR + AW +R+ + EPIEV E GGL+ G+RAF+P + +
Sbjct: 274 LLSHRRAVEREAWDALRRAYEAGEPIEVPVVEQVKGGLVCDA-GVRAFMPASHV 326
>gi|427720049|ref|YP_007068043.1| RNA binding S1 domain-containing protein [Calothrix sp. PCC 7507]
gi|427352485|gb|AFY35209.1| RNA binding S1 domain protein [Calothrix sp. PCC 7507]
Length = 299
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++++ ++ + V+ T N GG+ I LR F+P++ LL R
Sbjct: 96 GQVTLSRKQLEIQQIWERLTEMQENSQTVTVRVTGVNKGGVTVDILSLRGFIPRSHLLER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|260436360|ref|ZP_05790330.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
gi|260414234|gb|EEX07530.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
Length = 390
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S R L + +W RV+++ + + ++V +N GG+ +EGLR F+P+++L +
Sbjct: 180 GMVTISCRALELRKSWDRVKELDKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQNG 239
Query: 332 VNN 334
N+
Sbjct: 240 ENH 242
>gi|254526566|ref|ZP_05138618.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
gi|221537990|gb|EEE40443.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
Length = 401
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 133 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 192
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 193 MVTVSARALILRQSWEKVSSSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL 248
>gi|357448761|ref|XP_003594656.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
gi|355483704|gb|AES64907.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
Length = 407
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS R + ++AW R RQ++ + ++ K + N GG++ +EGL+ F+P +++ ++
Sbjct: 156 ILSLRDIQFELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTK 212
>gi|388491680|gb|AFK33906.1| unknown [Medicago truncatula]
Length = 409
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS R + ++AW R RQ++ + ++ K + N GG++ +EGL+ F+P +++ ++
Sbjct: 158 ILSLRDIQFELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTK 214
>gi|302669602|ref|YP_003829562.1| S1 RNA binding domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302394075|gb|ADL32980.1| S1 RNA binding domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 302
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G LLS + + ++W ++ ++K+ + I+VK +E G + +EG+R F+P ++L
Sbjct: 84 NGNILLSKKEANQVLSWDKINELKEADSYIDVKVSEAVKAGCVAFLEGIRGFIPASKL 141
>gi|406926981|gb|EKD63087.1| RNA binding S1 protein [uncultured bacterium]
Length = 387
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 41/166 (24%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
S E + PG V G ++S +++++ +++G G + KEV KD
Sbjct: 16 SPEIIKLIPGKLVEGTIISLSKSRIMIDIGGITTGIIAGKEV----------------KD 59
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLG-RTLSGRPLLSTRRLF 282
++E + ++ G + A VL G +LS R+
Sbjct: 60 SQETI------------------------KSIQVGDTISAAVLEPENEEGYVVLSLRKAS 95
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
++ +W R + ++ I+VK E N GGLL I+G++ F+P ++L
Sbjct: 96 QEKSWQRFLDAFENDKIIQVKPNEANKGGLLLEIDGIKGFIPVSQL 141
>gi|357112501|ref|XP_003558047.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like
[Brachypodium distachyon]
Length = 401
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
+LS + + + +AW R RQ++ + I K N GG++ +EGL+AF+P +++ S+
Sbjct: 155 ILSLQSIQQDLAWERCRQLQAEDVVITGKVIGGNKGGVVALVEGLKAFVPFSQVSSKTT 213
>gi|300867598|ref|ZP_07112247.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
gi|300334405|emb|CBN57417.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
Length = 306
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W +V ++ I+V+ T N GG+ + G+R F+P++ ++ R
Sbjct: 96 GQVTLSLRQLEIKKTWDQVTEMFNTGAVIQVRVTGHNKGGVTVDVMGMRGFIPRSHVVER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|384246482|gb|EIE19972.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 386
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 274 PLLSTRRLFRKMAWHRVRQIKQL----NEPIEVKFTEWNTGGLLTRIEGLRAFLP 324
PLL+ + L +AW R RQ+K E V T+ N+GGLL +E L AFLP
Sbjct: 137 PLLTAKELDIAVAWERARQMKHACEEDKEIFTVVVTDVNSGGLLATMESLPAFLP 191
>gi|260881013|ref|ZP_05403387.2| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
gi|260850179|gb|EEX70186.1| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
Length = 349
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 254 VVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
VV+ G V+ V+ +LS + R +AW + + K+ E ++ T+ GGL+
Sbjct: 61 VVKVGDVIDVYVVSLGGDNGGILSKVKADRMVAWTEMEKKKEAGETVQAHITQVVKGGLV 120
Query: 314 TRIEGLRAFLPKAEL 328
+EGLR F+P +++
Sbjct: 121 ASVEGLRGFIPASQM 135
>gi|220909013|ref|YP_002484324.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865624|gb|ACL45963.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 292
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ G+ LS +RL K W R + +++ I+V+ T N GGL +G+R
Sbjct: 75 FLIIRGQDAEGQISLSLKRLEIKALWERYQSLQESQGAIDVRVTGVNKGGLTVDAKGIRG 134
Query: 322 FLPKAELL 329
F+P+ ++
Sbjct: 135 FIPRTHVV 142
>gi|218295918|ref|ZP_03496698.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
gi|218243656|gb|EED10184.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
Length = 530
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ W R++++ + EP+ V E GG++ ++ +RAF+P ++L L
Sbjct: 96 TGQILLSRKKVEATEHWDRIQELYEKGEPVTVTVKEKVKGGVVAELDSVRAFIPASQLDL 155
Query: 330 SRVNNF 335
R+ N
Sbjct: 156 RRIPNL 161
>gi|126695894|ref|YP_001090780.1| 30S ribosomal protein S1-like protein B, Nbp1 [Prochlorococcus
marinus str. MIT 9301]
gi|126542937|gb|ABO17179.1| 30S ribosomal protein S1-like protein B, putative Nbp1
[Prochlorococcus marinus str. MIT 9301]
Length = 401
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 133 ISGKVIAIESDGLYIDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 192
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 193 MVTVSARALILRQSWEKVSSSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL 248
>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
Length = 488
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|333979263|ref|YP_004517208.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822744|gb|AEG15407.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 739
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 39/170 (22%)
Query: 162 KVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLK 221
K +VE +PG V GVVV +++ V+VGA G ++PL + L C
Sbjct: 362 KEAVEVKSLRPGQIVKGVVVQVGTDEVLVDVGAKSEG------IIPLRE-----LSC--- 407
Query: 222 KDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281
+ V +VK D I ++ V+ AE GR +LS R
Sbjct: 408 -----YNVSSPAEVVKVGDEIEVA--------------VIKAE----DNEGRLILSKERA 444
Query: 282 FRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+ AW ++ + + EP+E E GGLL + GLRAFLP A L+ R
Sbjct: 445 DAERAWVKLNEHLESGEPVEGTVREVVKGGLLVDV-GLRAFLP-ASLVER 492
>gi|145343076|ref|XP_001416292.1| Plastid ribosomal protein S1, imported to chloroplast, small
ribosomal subunit [Ostreococcus lucimarinus CCE9901]
gi|144576517|gb|ABO94585.1| Plastid ribosomal protein S1, imported to chloroplast, small
ribosomal subunit [Ostreococcus lucimarinus CCE9901]
Length = 339
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS RR+ AW R R+ + + + N GGLL +E LR F+P++ + R N
Sbjct: 127 LSVRRMELAKAWDRCREAQADDAALTGDVLSVNRGGLLVEVEKLRGFVPQSHIGVRTLNR 186
Query: 336 TEL 338
EL
Sbjct: 187 EEL 189
>gi|336325470|ref|YP_004605436.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
gi|336101452|gb|AEI09272.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
Length = 488
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E
Sbjct: 74 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 133 KGGLILDI-GLRGFLPAS 149
>gi|337290612|ref|YP_004629633.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
gi|384515525|ref|YP_005710617.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
gi|397653858|ref|YP_006494541.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
gi|334696726|gb|AEG81523.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
gi|334698918|gb|AEG83714.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
gi|393402814|dbj|BAM27306.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
Length = 487
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|308801060|ref|XP_003075311.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
gi|116061865|emb|CAL52583.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
Length = 250
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS RR+ AW R R+ + + + + N GGLL +E LR F+P++ + R N
Sbjct: 36 LSVRRMELAKAWDRCREAQAEDAALTGEVLSVNRGGLLVEVEKLRGFVPQSHIGIRTLNR 95
Query: 336 TEL 338
EL
Sbjct: 96 EEL 98
>gi|392400474|ref|YP_006437074.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
gi|390531552|gb|AFM07281.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
Length = 487
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|334563708|ref|ZP_08516699.1| 30S ribosomal protein S1 [Corynebacterium bovis DSM 20582]
Length = 488
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
gi|375288519|ref|YP_005123060.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
3/99-5]
gi|379715230|ref|YP_005303567.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
gi|383314109|ref|YP_005374964.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
P54B96]
gi|384504528|ref|YP_005681198.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
gi|384506621|ref|YP_005683290.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
gi|384508709|ref|YP_005685377.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
gi|384510800|ref|YP_005690378.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
gi|385807399|ref|YP_005843796.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
gi|386740269|ref|YP_006213449.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
gi|387136462|ref|YP_005692442.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138534|ref|YP_005694513.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
52.97]
gi|387140533|ref|YP_005696511.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
1/06-A]
gi|389850285|ref|YP_006352520.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
gi|341824739|gb|AEK92260.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
gi|348606907|gb|AEP70180.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
42/02-A]
gi|349735012|gb|AEQ06490.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
52.97]
gi|355392324|gb|AER68989.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
1/06-A]
gi|371575808|gb|AEX39411.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
3/99-5]
gi|377653936|gb|AFB72285.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
gi|380869610|gb|AFF22084.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
P54B96]
gi|383804792|gb|AFH51871.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
gi|384476963|gb|AFH90759.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
gi|388247591|gb|AFK16582.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
Length = 487
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|375293001|ref|YP_005127540.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
gi|376293166|ref|YP_005164840.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
gi|371582672|gb|AEX46338.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
gi|372110489|gb|AEX76549.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
Length = 513
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 104 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 163
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 164 ILDI-GLRGFLPAS 176
>gi|86605910|ref|YP_474673.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86554452|gb|ABC99410.1| putative ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 304
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETG-------TVLFAE-------VLGRTLSG 272
+VRG++ ++D A+ GG P P+ E G + LF +L G
Sbjct: 35 VVRGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRSGEDLSELFPLKSEADFLILREDSEG 94
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+ +LS RRL K W + + + + + N GG+L ++GLR F+P++ L R
Sbjct: 95 QIVLSARRLRLKRLWEELAEKQTNGQTVTALVIGTNKGGVLVDVQGLRGFIPRSHLNQRE 154
Query: 333 N 333
N
Sbjct: 155 N 155
>gi|78212274|ref|YP_381053.1| SSU ribosomal protein S1P [Synechococcus sp. CC9605]
gi|78196733|gb|ABB34498.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 424
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+S R L + +W RV+++++ + ++V +N GG+ ++GLR F+P+++L + N+
Sbjct: 218 ISCRALELRKSWDRVKELEKQGKVVQVIVNNFNRGGVTCDLQGLRGFIPRSQLQNGENH 276
>gi|424780259|ref|ZP_18207139.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
gi|422843217|gb|EKU27658.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
Length = 394
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 254 VVETGTVLFAEVLGRTLS----GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+V+ G VL V+ T+S G LLS RRL K AW + + + NE +E K T+
Sbjct: 70 IVKVGDVLDLVVIS-TISDKENGNYLLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVR 128
Query: 310 GGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKV 342
GGL+ + G+R F+P + + + +F+E K +V
Sbjct: 129 GGLVVDL-GVRGFVPASMITDHYIKDFSEYKGRV 161
>gi|376284650|ref|YP_005157860.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
gi|371578165|gb|AEX41833.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
Length = 506
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 97 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 156
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 157 ILDI-GLRGFLPAS 169
>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
Length = 425
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R +LS +++ +AW R RQ++ + ++ K N GGL +E LR F+P +++ +++
Sbjct: 176 RMILSLQKIQCDLAWERCRQLQTEDVVVKGKVLSANKGGLNVLVECLRGFVPFSQISTKI 235
Query: 333 N 333
N
Sbjct: 236 N 236
>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
gi|419860721|ref|ZP_14383362.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
gi|387983115|gb|EIK56614.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 486
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|375290806|ref|YP_005125346.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
gi|376242739|ref|YP_005133591.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
gi|376245637|ref|YP_005135876.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
gi|376248430|ref|YP_005140374.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
gi|376251220|ref|YP_005138101.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
gi|376254226|ref|YP_005142685.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
gi|376257038|ref|YP_005144929.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
gi|376287654|ref|YP_005160220.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
gi|376290348|ref|YP_005162595.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
gi|371580477|gb|AEX44144.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
gi|371584988|gb|AEX48653.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
gi|372103744|gb|AEX67341.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
gi|372105981|gb|AEX72043.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
gi|372108267|gb|AEX74328.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
gi|372112724|gb|AEX78783.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
gi|372114998|gb|AEX81056.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
gi|372117310|gb|AEX69780.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
gi|372119555|gb|AEX83289.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
Length = 513
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 104 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 163
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 164 ILDI-GLRGFLPAS 176
>gi|340794195|ref|YP_004759658.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
gi|340534105|gb|AEK36585.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
Length = 486
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E
Sbjct: 74 PGE-VVEIGDEVDALVLTKEDKDGRLILSKKRAQYERAWGTIEELKEKDEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 133 KGGLILDI-GLRGFLPAS 149
>gi|427722304|ref|YP_007069581.1| 30S ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
gi|427354024|gb|AFY36747.1| SSU ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
Length = 296
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W + Q + ++++ T N GG+ ++GLR F+P + L+ +
Sbjct: 91 GQVTLSRRKLEEKRIWEELAQAAESGSSVQIRITGSNRGGVTGDVKGLRGFVPNSHLVDK 150
>gi|119485419|ref|ZP_01619747.1| RNA binding S1 [Lyngbya sp. PCC 8106]
gi|119457175|gb|EAW38301.1| RNA binding S1 [Lyngbya sp. PCC 8106]
Length = 295
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G+ LLS R+L + W R+ + +Q + +V+ T N GG+ + LR F+P++ L
Sbjct: 90 GQVLLSIRQLELEKVWDRLNESQQQAQSFQVRVTGMNRGGVTVDFDSLRGFIPRSHL 146
>gi|428221436|ref|YP_007105606.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427994776|gb|AFY73471.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 300
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS R L K AW ++ ++ + + N GG++ ++G+R F+P++ L+ +
Sbjct: 95 GEVKLSIRLLKIKQAWLNLQDLQAEGKAFNCRVINVNKGGVVADVQGIRGFIPRSHLVDK 154
Query: 332 VN 333
VN
Sbjct: 155 VN 156
>gi|406965785|gb|EKD91382.1| hypothetical protein ACD_30C00015G0002 [uncultured bacterium]
Length = 373
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 271 SGRPLLSTRRLFRKMA---WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
SG+ +L +R + W++ + N ++ K E N GGL+ +EG+R FLP ++
Sbjct: 102 SGQVVLGLQRSLKTKTPSQWYKFEAALKSNSVLKGKALELNRGGLIVEVEGIRGFLPSSQ 161
Query: 328 L-LSRVNNFTEL 338
+ LS+ N EL
Sbjct: 162 VTLSQAANLEEL 173
>gi|124025297|ref|YP_001014413.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
str. NATL1A]
gi|123960365|gb|ABM75148.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. NATL1A]
Length = 465
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V+ + + + I VK +N GG+ EGLR F+P+++L
Sbjct: 245 GMVTISCRALELRKSWDKVQNLAKEGKVIRVKINGFNRGGVTCDFEGLRGFIPRSQL 301
>gi|324997170|ref|ZP_08118282.1| 30S ribosomal protein S1 [Pseudonocardia sp. P1]
Length = 502
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + +K+ +EP+E E GGL+ I GLR FLP +
Sbjct: 101 GRLILSKKRAQYERAWGTIEALKEADEPVEGTVIEVVKGGLILDI-GLRGFLPAS 154
>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens
YS-314]
gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
Length = 485
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVQVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|225432062|ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
Length = 410
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
+LS R + +AW R RQ++ + ++ K N GG++ +EGLR F+P +++ S+
Sbjct: 161 ILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTT 219
>gi|357590914|ref|ZP_09129580.1| 30S ribosomal protein S1 [Corynebacterium nuruki S6-4]
Length = 487
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKDGRLILSKKRAQYERAWGTIEDLKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|326202127|ref|ZP_08191997.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
papyrosolvens DSM 2782]
gi|325987922|gb|EGD48748.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
papyrosolvens DSM 2782]
Length = 672
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +R+ W + + +P++VK TE GG++ G+R F+P +++ R
Sbjct: 364 GNVLLSKKRVDAVKGWDVIESAYESKQPVKVKVTEKVNGGVIGNASGVRVFIPASQISDR 423
Query: 332 -VNNFTELKEKV 342
+ + +E ++V
Sbjct: 424 FIKDLSEFVKQV 435
>gi|72383697|ref|YP_293052.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
gi|72003547|gb|AAZ59349.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 431
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V+ + + + I VK +N GG+ EGLR F+P+++L
Sbjct: 211 GMVTISCRALELRKSWDKVQNLAKEGKVIRVKINGFNRGGVTCDFEGLRGFIPRSQL 267
>gi|33866272|ref|NP_897831.1| 30S ribosomal protein S1 homolog B, Nbp1 [Synechococcus sp. WH
8102]
gi|33639247|emb|CAE08255.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus
sp. WH 8102]
Length = 406
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+++++ + ++V +N GG+ +EGLR F+P+++ L +N
Sbjct: 200 ISCRALELRKSWDKVKELEKHGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQ-LQEGDNH 258
Query: 336 TEL 338
EL
Sbjct: 259 QEL 261
>gi|90655490|gb|ABD96330.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O6]
Length = 408
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+++++ + ++V +N GG+ +EGLR F+P+++ L +N
Sbjct: 202 ISCRALELRKSWDKVKELEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQ-LQEGDNH 260
Query: 336 TEL 338
EL
Sbjct: 261 QEL 263
>gi|424826657|ref|ZP_18251513.1| 30S ribosomal protein S1 [Clostridium sporogenes PA 3679]
gi|365980687|gb|EHN16711.1| 30S ribosomal protein S1 [Clostridium sporogenes PA 3679]
Length = 387
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 228 MVRGKMGIVKDDDAI----AMSGGSGPGRPVVETGTVLFAEVLGR--TLS---------- 271
+++GK+ V D++A+ +S G P + VV+ V +++ + LS
Sbjct: 26 LLKGKVISVSDNEAVLNIAYISDGILPKKEVVDNEEVNLKDIISKDDILSVCVLEINDGE 85
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LLS ++ AW + + + E +E+K E GG + IEG+R F+P +++
Sbjct: 86 GNVLLSKKKAEIIEAWSNLEKAFKNEEILEIKVEEIVKGGAIGHIEGIRVFIPASQI 142
>gi|423349119|ref|ZP_17326775.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
gi|393703348|gb|EJD65549.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
Length = 493
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW V +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 IVDI-GLRGFLPAS 151
>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
Length = 487
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + +K+ +EP+E E GGL+ I GLR FLP +
Sbjct: 101 GRLILSKKRAQYERAWGTIEALKEADEPVEGTVIEVVKGGLILDI-GLRGFLPAS 154
>gi|229828596|ref|ZP_04454665.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
14600]
gi|229793190|gb|EEP29304.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
14600]
Length = 294
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 197 LGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVE 256
+G ++ EVL + D E+ DL GK+GI+ +D ++ G P + +
Sbjct: 7 VGDIVNCEVLGVSDHEVS---VDLNA--------GKIGIIAFED-LSEEEGYDPHKHL-R 53
Query: 257 TGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
G L A++ GR G LS AW +++ NE + V E GG+
Sbjct: 54 NGKHLTAQITSLDDGR---GNIRLSVNAARHTDAWDQLKDAHSANETLTVHVREQVKGGV 110
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFTE 337
+ ++GLRAF+P ++L S V+N +
Sbjct: 111 VAYLKGLRAFIPASQLAASYVDNLAD 136
>gi|429729646|ref|ZP_19264303.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
gi|429149040|gb|EKX92030.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
Length = 491
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV+ G + A VL + GR +LS +R + AW + ++K+ +EP+ E
Sbjct: 74 PGE-VVQVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 133 KGGLILDI-GLRGFLPAS 149
>gi|82799326|gb|ABB92252.1| 30S ribosomal protein S1-like protein B [uncultured marine type-A
Synechococcus 5B2]
Length = 411
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V+++++ + ++V +N GG+ +EGLR F+P+++L
Sbjct: 205 ISCRALELRKSWDKVKELEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQL 257
>gi|451944076|ref|YP_007464712.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451903463|gb|AGF72350.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 486
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q++ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGNIEQLQANDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|392398275|ref|YP_006434876.1| 30S ribosomal protein S1 [Flexibacter litoralis DSM 6794]
gi|390529353|gb|AFM05083.1| ribosomal protein S1 [Flexibacter litoralis DSM 6794]
Length = 610
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 209 YDKEMDFLLCDLKKD-----AEEFMVRGKMGIVKDDDAIAMSGGSGPGR---------PV 254
Y E L DL ++ AE +V G + V D +AI G G P
Sbjct: 27 YQDERQQELADLYEETLTAFAENELVTGTIVGVTDREAIVNIGHKSDGLVSLSEFRDLPE 86
Query: 255 VETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
++ G + V + +G+ LLS R+ AW ++ Q Q +E IE GGL+
Sbjct: 87 LKAGDQVTVYVEKQEDANGQILLSRRKAMALQAWKKIEQSHQGDEVIEGVIKRRTKGGLI 146
Query: 314 TRIEGLRAFLPKAEL 328
I G+ AFLP +++
Sbjct: 147 ADIFGIEAFLPGSQI 161
>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
Length = 493
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW V +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 IVDI-GLRGFLPAS 151
>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
Length = 434
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R ++S R + K++W R++QI+ + + N GGL +IE L+AFLP ++L +
Sbjct: 180 RFIVSLREMHIKLSWERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFSQLAGGL 239
Query: 333 NN 334
N
Sbjct: 240 NQ 241
>gi|406905815|gb|EKD47166.1| RNA binding S1 protein [uncultured bacterium]
Length = 408
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G LS R K +W +++ Q NE +EVK T+ N GGL+ ++ + FLP ++L
Sbjct: 84 NGEMELSFRFAGNKKSWEDLKEQFQKNEVVEVKVTDANKGGLIVKLNHITGFLPVSQL 141
>gi|354558294|ref|ZP_08977550.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium metallireducens DSM 15288]
gi|353549019|gb|EHC18463.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium metallireducens DSM 15288]
Length = 670
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G P+LS RR + A R+ Q+ + E ++ K TE GGLL + G+R F+P +++
Sbjct: 369 GNPVLSKRRAAEEEASERLEQLAESKEELQAKVTEVVKGGLLVDV-GMRGFVPASQI 424
>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
Length = 438
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R ++S R + K++W R++QI+ + + N GGL +IE L+AFLP ++L +
Sbjct: 184 RFIVSLREMHIKLSWERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFSQLAGGL 243
Query: 333 NN 334
N
Sbjct: 244 NQ 245
>gi|347532511|ref|YP_004839274.1| RNA binding S1 domain containing protein [Roseburia hominis A2-183]
gi|345502659|gb|AEN97342.1| RNA binding S1 domain protein [Roseburia hominis A2-183]
Length = 300
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS R + AW +++++ + + V+ E G++ +EG+RAF+P +++ S
Sbjct: 82 AGNILLSRREANEEQAWEKLKEMMEEGTTVTVRIKESVKAGVVAYLEGIRAFIPASQITS 141
Query: 331 RVNNFTE 337
TE
Sbjct: 142 AYVEDTE 148
>gi|390559271|ref|ZP_10243622.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
gi|390174148|emb|CCF82915.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
Length = 459
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D LL D+ +E + + + D++ +S G VL V G
Sbjct: 61 DELLVDIGSKSEGVIPSREFSTLTDEERARLSVGD----------HVLVFVVQAENQEGH 110
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+LS R ++ +W +++ + + IE + T +N GGLL ++G+R F+P +++
Sbjct: 111 AVLSIDRARQEKSWRLLQEAFEGGDIIEAQVTNYNKGGLLVNLDGVRGFVPASQV 165
>gi|254417151|ref|ZP_05030897.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196176129|gb|EDX71147.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 299
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 215 FLLCDLKKDAEEF--------MVRGKM------GIVKDDDAIAMS---GGSGPGRPVVET 257
F + D K EE+ +VRGK+ G+ D +++ GG PV +
Sbjct: 15 FSMEDFAKALEEYDYEFSQGQVVRGKVHSYEMEGVYVDIGGKSLAYVPGGEVSVAPVEDW 74
Query: 258 GTVL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG 310
VL F + + G+ LS R+L W ++ Q++ + ++V+ T N G
Sbjct: 75 SEVLPLQEELEFLIIREQNAEGQITLSRRQLEINKIWDQLAQVQDSGKSLQVQVTGVNKG 134
Query: 311 GLLTRIEGLRAFLPKAELLSRVN 333
G+ +GLR F+P++ L R N
Sbjct: 135 GVTIDWQGLRGFIPRSHLNQRGN 157
>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
27678]
gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
Length = 490
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+GR +LS R++ + W R Q+ + + N+GG + +EGLR F+P +++ +
Sbjct: 159 NGRMILSLRKIQYDLCWERCAQMLADDVVVRGTILSHNSGGFVVDVEGLRGFVPFSQVSA 218
Query: 331 R 331
R
Sbjct: 219 R 219
>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
Length = 488
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ EP+ E
Sbjct: 74 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 133 KGGLILDI-GLRGFLPAS 149
>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
Length = 488
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ EP+ E
Sbjct: 74 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 133 KGGLILDI-GLRGFLPAS 149
>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 389
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+GR +LS R++ ++ W R Q+ + + N+GG + +EGLR F+P +++
Sbjct: 164 NGRMILSLRKIQHELCWERCAQLLADDVVVRGTILSSNSGGFVVAVEGLRGFVPFSQI 221
>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 491
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
Length = 490
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
Length = 490
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
L2-32]
gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
Length = 490
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
Length = 490
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 491
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|297624806|ref|YP_003706240.1| RNA binding S1 domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297165986|gb|ADI15697.1| RNA binding S1 domain protein [Truepera radiovictrix DSM 17093]
Length = 705
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R ++ AW+ ++ I P+EV+ E GGL+ + G+RAFLP +++ + RVN
Sbjct: 194 ILSKKRADQERAWNLLQDIYDKKLPVEVEIVEKVRGGLVANL-GVRAFLPASQVDVRRVN 252
Query: 334 NFT 336
+ +
Sbjct: 253 DLS 255
>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
Length = 490
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|225377348|ref|ZP_03754569.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
16841]
gi|225210879|gb|EEG93233.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
16841]
Length = 300
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G LLS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P ++L L
Sbjct: 83 GNILLSRKEANDVLAWEKLQQMMEDGTVVKVRIKESVPSGVVTFLEGIRAFIPASQLALD 142
Query: 331 RVNNFTE 337
V N E
Sbjct: 143 YVENTEE 149
>gi|395237266|ref|ZP_10415353.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|423350857|ref|ZP_17328509.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|394487499|emb|CCI83441.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|404387158|gb|EJZ82283.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
Length = 481
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVELGDEVDALVLTKEDKDGRLILSKKRAQYERAWGDIERLKENDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 491
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|354613005|ref|ZP_09030941.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica
YIM 90007]
gi|353222660|gb|EHB86961.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica
YIM 90007]
Length = 507
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 86 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKERDEPVSGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 146 ILDI-GLRGFLPAS 158
>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
Length = 491
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
Length = 400
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
+LS + + +++AW R RQ++ + + K N GG++ +EGL+ F+P +++ S+
Sbjct: 157 ILSLQAIQQELAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKTT 215
>gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
Length = 516
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ EP+ E
Sbjct: 102 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEVV 160
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 161 KGGLILDI-GLRGFLPAS 177
>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
JDM301]
gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 491
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 491
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
55813]
gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
Length = 491
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
Length = 491
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 491
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|428313261|ref|YP_007124238.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428254873|gb|AFZ20832.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 302
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W + ++++ + +V+ T N GG+ + GLR F+P++ L R
Sbjct: 96 GQVTLSRRQLEVKRLWDELAEVQEEGKSFQVRVTGVNKGGVTVDMRGLRGFIPRSHLSER 155
>gi|410697810|gb|AFV76878.1| ribosomal protein S1 [Thermus oshimai JL-2]
Length = 534
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ +LS +++ W ++ + + EP+ V E GG++ ++G++AF+P ++L L
Sbjct: 96 TGQVILSRKKVESTEHWDHIQALYEKGEPVTVTVKEKVKGGVVAELDGVQAFIPASQLDL 155
Query: 330 SRVNNFTE 337
R+ N E
Sbjct: 156 RRIPNLDE 163
>gi|452821105|gb|EME28139.1| 30S ribosomal protein S1 (plastid) [Galdieria sulphuraria]
Length = 523
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F ++ + SG P +S RRL ++AW ++ +E + N GG L + G+R
Sbjct: 246 FVLLVADSDSGHPKVSIRRLELEIAWKKLNSALDEASTVEAQVVAVNRGGCLVLVYGIRG 305
Query: 322 FLPKAEL 328
FLP + +
Sbjct: 306 FLPISHI 312
>gi|119513349|ref|ZP_01632384.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119461989|gb|EAW42991.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 284
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++ + + ++V+ T N GG+ I LR F+P++ L R
Sbjct: 80 GQVTLSRKQLEIQQVWERLTEMNEGGQTVQVRVTGVNKGGVTVDILSLRGFIPRSHLAER 139
Query: 332 VNNFTELK 339
+N LK
Sbjct: 140 -DNLEALK 146
>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 490
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTVEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|352518176|ref|YP_004887493.1| 30S ribosomal protein S1 [Tetragenococcus halophilus NBRC 12172]
gi|348602283|dbj|BAK95329.1| 30S ribosomal protein S1 [Tetragenococcus halophilus NBRC 12172]
Length = 405
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + Q E IE T GGL+ + G+R F+P + +
Sbjct: 94 NGSYLLSKRRLDAKKVWEEIEEKYQNGETIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 152
Query: 331 R-VNNFTELKEK 341
V++F E K K
Sbjct: 153 YFVDDFNEYKGK 164
>gi|160878183|ref|YP_001557151.1| RNA-binding S1 domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160426849|gb|ABX40412.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
Length = 303
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 255 VETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLT 314
V G + A +L G LLS ++ ++W +++ + VK + GG++T
Sbjct: 69 VTIGEEITAMILSEDKEGNLLLSKKKADDILSWDKLKTMMTERTVTTVKVSNAVNGGVVT 128
Query: 315 RIEGLRAFLPKAEL-LSRVNNFTELKEKV 342
+EG+RAF+P + L LS V + + KV
Sbjct: 129 YLEGIRAFIPASMLSLSYVEDVSTFVGKV 157
>gi|375101674|ref|ZP_09747937.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
gi|374662406|gb|EHR62284.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
Length = 493
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 84 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 143
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 144 ILDI-GLRGFLPAS 156
>gi|291538052|emb|CBL11163.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4]
Length = 303
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G +LS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P +++
Sbjct: 82 AGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAFIPASQI 139
>gi|240144542|ref|ZP_04743143.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
gi|257203431|gb|EEV01716.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
Length = 303
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G +LS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P +++
Sbjct: 82 AGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAFIPASQI 139
>gi|451336997|ref|ZP_21907548.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
gi|449420339|gb|EMD25826.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
Length = 499
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP +
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS 158
>gi|406925750|gb|EKD62158.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 368
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 255 VETGTVLFAEVL-GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
++ G +FA+V+ G +LS R+ + W +E E+N GGLL
Sbjct: 73 LKVGDTIFAKVVQAENQQGYIVLSLRKAEKDKKWKGAEDALATGSVLEATIIEYNKGGLL 132
Query: 314 TRIEGLRAFLPKAEL 328
T GLR F+P + L
Sbjct: 133 TDCLGLRGFIPLSHL 147
>gi|383831036|ref|ZP_09986125.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
gi|383463689|gb|EID55779.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
Length = 493
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 84 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 143
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 144 ILDI-GLRGFLPAS 156
>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
gi|384151397|ref|YP_005534213.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|399539858|ref|YP_006552520.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
gi|340529551|gb|AEK44756.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|398320628|gb|AFO79575.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
Length = 499
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP +
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS 158
>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
Length = 497
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP +
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS 158
>gi|452959839|gb|EME65170.1| 30S ribosomal protein S1 [Amycolatopsis decaplanina DSM 44594]
Length = 499
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP +
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS 158
>gi|253581079|ref|ZP_04858339.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847615|gb|EES75585.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 302
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G LLS +AW +++++K E I+V GG++ +EG+R F+P ++L
Sbjct: 83 NGNILLSRTEAADVLAWDKLKELKDSKEVIDVVVKGIVNGGVIAYVEGVRGFIPASKL 140
>gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
Length = 408
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G +LS + + W + Q+++ E K T +N GGL+ + GLR F+P +++ L
Sbjct: 103 NGNIVLSYMKAREESDWQKAEQMRETKEVYHSKITGYNKGGLIVPVHGLRGFVPASQISL 162
Query: 330 SR 331
SR
Sbjct: 163 SR 164
>gi|435853713|ref|YP_007315032.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Halobacteroides halobius DSM 5150]
gi|433670124|gb|AGB40939.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Halobacteroides halobius DSM 5150]
Length = 686
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G P+LS R++ + AW +V++ + E I K GGL+ I GLR F+P + +
Sbjct: 369 GHPILSKRKVDEEAAWAKVKEAYENEEIITAKVDREVKGGLVVNI-GLRGFIPASHV 424
>gi|385676805|ref|ZP_10050733.1| 30S ribosomal protein S1 [Amycolatopsis sp. ATCC 39116]
Length = 498
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP +
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS 156
>gi|291534309|emb|CBL07421.1| Ribosomal protein S1 [Roseburia intestinalis M50/1]
Length = 303
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G +LS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P +++
Sbjct: 82 AGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAFIPASQI 139
>gi|408790528|ref|ZP_11202146.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
gi|408520075|gb|EKK20169.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
Length = 405
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
+G LLS RRL W ++ + +E I VK T GGL+ +G+R F+P +
Sbjct: 88 NGSYLLSVRRLEALKIWDEIKDKESKDENITVKVTRPVKGGLVVNADGVRGFIPAS 143
>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51866]
Length = 482
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR LLS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP +
Sbjct: 96 GRLLLSKKRAQYERAWGTIEELKEKDEPVTGTVIEVVKGGLILDI-GLRGFLPAS 149
>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
gi|113548409|dbj|BAF11852.1| Os03g0315800, partial [Oryza sativa Japonica Group]
Length = 390
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P +++ S+
Sbjct: 144 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSK 200
>gi|449459770|ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
gi|449517357|ref|XP_004165712.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
Length = 413
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
+LS R + +AW R RQ++ + ++ K + N GG++ +EGLR F+P +++ ++ N
Sbjct: 165 ILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSN 223
>gi|116072199|ref|ZP_01469466.1| RNA binding S1 [Synechococcus sp. BL107]
gi|116064721|gb|EAU70480.1| RNA binding S1 [Synechococcus sp. BL107]
Length = 412
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +S R L + +W +V+ +++ + ++V + +N GG+ +EGLR F+P+++L
Sbjct: 202 GMVTISCRALELRKSWDKVKVLEKEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQL 258
>gi|401404074|ref|XP_003881642.1| putative 30S ribosomal protein S1 [Neospora caninum Liverpool]
gi|325116055|emb|CBZ51609.1| putative 30S ribosomal protein S1 [Neospora caninum Liverpool]
Length = 1526
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + L R AW ++ +++ ++P+ + GG++ R+ GLR FLP ++L + V
Sbjct: 1166 ILSLQTLRRIAAWEQLLALQREDQPLTATVLHAHKGGVVVRVLGLRGFLPASQLPTSVKP 1225
Query: 335 FTEL 338
+L
Sbjct: 1226 GPQL 1229
>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
Length = 495
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 42/164 (25%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ V++G G +L++E+ +K D
Sbjct: 32 TIKYF--NDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLSREL-------------SIKHD 76
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
+ PG VVE G + A VL + GR +LS +R
Sbjct: 77 VD------------------------PGE-VVEVGDEIEALVLQKEDKEGRLMLSKKRAQ 111
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
+ AW + +IK+ N + E GGL+ I GLR FLP +
Sbjct: 112 YERAWGDIEKIKEDNGVVTGTVIEVVKGGLIVDI-GLRGFLPAS 154
>gi|406945079|gb|EKD76682.1| RNA binding S1 protein [uncultured bacterium]
Length = 413
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G+ LS R+ K AW +++ ++ +E +E + N GGL+ R+ + FLP ++L
Sbjct: 88 NGQLELSFRQAGHKKAWDKLKVFRESHEVVEANIVDANKGGLIIRVGRVSGFLPVSQL 145
>gi|78185204|ref|YP_377639.1| RNA binding S1 [Synechococcus sp. CC9902]
gi|78169498|gb|ABB26595.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 412
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V+ +++ + ++V + +N GG+ +EGLR F+P+++L
Sbjct: 206 ISCRALELRKSWDKVKVLEKEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQL 258
>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
Length = 501
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 86 VVTVGDFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 146 ILDI-GLRGFLPAS 158
>gi|384566732|ref|ZP_10013836.1| ribosomal protein S1 [Saccharomonospora glauca K62]
gi|384522586|gb|EIE99781.1| ribosomal protein S1 [Saccharomonospora glauca K62]
Length = 491
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP +
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDI-GLRGFLPAS 156
>gi|297564598|ref|YP_003683570.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM
9946]
gi|296849047|gb|ADH62062.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946]
Length = 598
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G+ +LS +R +W +++++ EP+ V E GGL+ +EG+RAFLP +++
Sbjct: 143 NGQIILSKKRAETDRSWVKIQELFDRAEPVMVTVKEKVKGGLVAFVEGVRAFLPASQV 200
>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
Length = 494
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A V+ + GR +LS +R + AW V +IK+ + +E E GGL
Sbjct: 79 VVQVGDTIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIETVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 IVDI-GLRGFLPAS 151
>gi|348171102|ref|ZP_08877996.1| 30S ribosomal protein S1 [Saccharopolyspora spinosa NRRL 18395]
Length = 499
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 86 VVTVGDFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 146 ILDI-GLRGFLPAS 158
>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
Length = 495
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP +
Sbjct: 104 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDI-GLRGFLPAS 157
>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
Length = 495
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|253755709|ref|YP_003028849.1| 30S ribosomal protein S1 [Streptococcus suis BM407]
gi|251818173|emb|CAZ55971.1| putative 30S ribosomal protein S1 [Streptococcus suis BM407]
Length = 401
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + + SR
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|90655539|gb|ABD96378.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O12]
Length = 408
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R L + +W +V++ ++ + ++V +N GG+ +EGLR F+P+++L
Sbjct: 202 ISCRALELRKSWDKVKEFEKEGKVVQVVVNGFNRGGVTCDLEGLRGFIPRSQL 254
>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
Length = 402
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P +++ S+
Sbjct: 156 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSK 212
>gi|330832708|ref|YP_004401533.1| putative 30S ribosomal protein S1 [Streptococcus suis ST3]
gi|386583975|ref|YP_006080378.1| putative 30S ribosomal protein S1 [Streptococcus suis D9]
gi|386586206|ref|YP_006082608.1| putative 30S ribosomal protein S1 [Streptococcus suis D12]
gi|389856706|ref|YP_006358949.1| putative 30S ribosomal protein S1 [Streptococcus suis ST1]
gi|329306931|gb|AEB81347.1| putative 30S ribosomal protein S1 [Streptococcus suis ST3]
gi|353736121|gb|AER17130.1| putative 30S ribosomal protein S1 [Streptococcus suis D9]
gi|353738352|gb|AER19360.1| putative 30S ribosomal protein S1 [Streptococcus suis D12]
gi|353740424|gb|AER21431.1| putative 30S ribosomal protein S1 [Streptococcus suis ST1]
Length = 401
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + + SR
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|253751564|ref|YP_003024705.1| 30S ribosomal protein S1 [Streptococcus suis SC84]
gi|253753465|ref|YP_003026606.1| 30S ribosomal protein S1 [Streptococcus suis P1/7]
gi|386577751|ref|YP_006074157.1| 30S ribosomal protein S1 [Streptococcus suis GZ1]
gi|386579806|ref|YP_006076211.1| putative 30S ribosomal protein S1 [Streptococcus suis JS14]
gi|386581750|ref|YP_006078154.1| putative 30S ribosomal protein S1 [Streptococcus suis SS12]
gi|386587986|ref|YP_006084387.1| putative 30S ribosomal protein S1 [Streptococcus suis A7]
gi|403061389|ref|YP_006649605.1| 30S ribosomal protein S1 [Streptococcus suis S735]
gi|251815853|emb|CAZ51463.1| putative 30S ribosomal protein S1 [Streptococcus suis SC84]
gi|251819711|emb|CAR45541.1| putative 30S ribosomal protein S1 [Streptococcus suis P1/7]
gi|292558214|gb|ADE31215.1| ribosomal protein S1 [Streptococcus suis GZ1]
gi|319757998|gb|ADV69940.1| putative 30S ribosomal protein S1 [Streptococcus suis JS14]
gi|353733896|gb|AER14906.1| putative 30S ribosomal protein S1 [Streptococcus suis SS12]
gi|354985147|gb|AER44045.1| putative 30S ribosomal protein S1 [Streptococcus suis A7]
gi|402808715|gb|AFR00207.1| 30S ribosomal protein S1 [Streptococcus suis S735]
Length = 401
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + + SR
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|381162416|ref|ZP_09871646.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
gi|418461759|ref|ZP_13032823.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
gi|359738168|gb|EHK87068.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
gi|379254321|gb|EHY88247.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
Length = 493
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP +
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDI-GLRGFLPAS 156
>gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Moorella
thermoacetica ATCC 39073]
gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella
thermoacetica ATCC 39073]
Length = 736
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G P+LS RR R++AW ++ + E I+ + E GGLL + G+R FLP A L+ R
Sbjct: 427 GHPVLSKRRADRRVAWEKLEEHLASGEEIQGEVIEVVKGGLLVDV-GVRGFLP-ASLVER 484
>gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 383
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 41/164 (25%)
Query: 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLC--DLKKDAEEF 227
PK G+ V G V+ ++ + VN+G G ++P + D + D+ K +E
Sbjct: 19 PKRGEVVTGKVIQVSDKGITVNIGYKADG------IVPRDEISNDPTITPQDVAKADDEI 72
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
V I+K DD G LLST+R+ W
Sbjct: 73 SVY----IIKTDDG-----------------------------EGNVLLSTKRVEHTKGW 99
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+ +I +E K E GG++ G+R F+P ++L R
Sbjct: 100 EDLEKIHDTESLVESKVVESVKGGVIAIARGIRCFIPASQLSDR 143
>gi|375096179|ref|ZP_09742444.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
gi|374656912|gb|EHR51745.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
Length = 497
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K +EP+ E GGL
Sbjct: 86 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKDKDEPVSGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 146 ILDI-GLRGFLPAS 158
>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
Length = 491
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 42/164 (25%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D + D
Sbjct: 27 TIKYF--NDGDIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDPD--------- 75
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
VV+ G + A VL + GR LLS +R
Sbjct: 76 -----------------------------EVVQIGDEIDALVLTKEDKEGRLLLSKKRAQ 106
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
+ AW + ++++ ++P+ E GGL+ I GLR FLP +
Sbjct: 107 YERAWGTIEELQKNDQPVTGTVIEVVKGGLILDI-GLRGFLPAS 149
>gi|108804846|ref|YP_644783.1| 30S ribosomal protein S1 [Rubrobacter xylanophilus DSM 9941]
gi|108766089|gb|ABG04971.1| SSU ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941]
Length = 411
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 242 IAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPI 300
+ + G+ P + VVE G + A VL + GR +LS +R + AW+++ + + +
Sbjct: 71 LTIRKGADP-KDVVELGQRIEALVLQKEDADGRLILSAKRAAFERAWNKIEEAYREQRNV 129
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTE 337
E E GGL+ I GLR FLP + + + RV N E
Sbjct: 130 EGPVIEVVKGGLILDI-GLRGFLPASLVDIRRVRNLEE 166
>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
Length = 489
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +++ EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 IIDI-GLRGFLPAS 149
>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
gi|194703708|gb|ACF85938.1| unknown [Zea mays]
gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
gi|223948553|gb|ACN28360.1| unknown [Zea mays]
Length = 401
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
+LS + + +++AW R RQ++ + + K N GG++ ++GL+ F+P +++ S+
Sbjct: 157 ILSLQAIQQELAWERCRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVPFSQVSSKTT 215
>gi|108707823|gb|ABF95618.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 380
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P +++ S+
Sbjct: 156 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSK 212
>gi|384438724|ref|YP_005653448.1| RNA binding S1 domain-containing protein [Thermus sp. CCB_US3_UF1]
gi|359289857|gb|AEV15374.1| RNA binding S1 domain protein [Thermus sp. CCB_US3_UF1]
Length = 561
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +++ W ++ + + EP+ V E GG++ ++G++AF+P ++L L
Sbjct: 126 TGQILLSRKKVEATEHWDHIQALYERGEPVTVTVKEKVKGGVVAELDGVQAFIPASQLDL 185
Query: 330 SRVNNFTE 337
R N E
Sbjct: 186 RRTPNLDE 193
>gi|406978540|gb|EKE00487.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 367
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 259 TVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEG 318
TVL + G ++S RR + WH + + +E E+N GGLL G
Sbjct: 77 TVLAQVIQAENDQGYIVMSLRRAEKDKRWHDLEVAYKDGSVLEATIIEYNKGGLLADCFG 136
Query: 319 LRAFLPKAEL 328
+R F+P + L
Sbjct: 137 MRGFIPLSHL 146
>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
Length = 382
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P +++ S+
Sbjct: 136 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSK 192
>gi|146320618|ref|YP_001200329.1| 30S ribosomal protein S1 [Streptococcus suis 98HAH33]
gi|145691424|gb|ABP91929.1| SSU ribosomal protein S1P [Streptococcus suis 98HAH33]
Length = 349
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + + SR
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|440684640|ref|YP_007159435.1| RNA binding S1 domain protein [Anabaena cylindrica PCC 7122]
gi|428681759|gb|AFZ60525.1| RNA binding S1 domain protein [Anabaena cylindrica PCC 7122]
Length = 300
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +V GK+ + D A GG R V +
Sbjct: 17 MDDFAQALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRAVTDLAE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VL F + + G+ LS ++L + W ++ Q+++ ++ ++V+ T N GG+
Sbjct: 77 VLPMQEDMEFLIIRDQDAEGQVTLSRKQLEIQQIWVKLLQMQENSQTVQVRVTGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVN 333
+ LR F+P++ L R N
Sbjct: 137 TVDLLSLRGFIPRSHLADRDN 157
>gi|413955874|gb|AFW88523.1| 30S ribosomal protein S1 [Zea mays]
Length = 401
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
+LS + + +++AW R RQ++ + + K N GG++ ++GL+ F+P +++ S+
Sbjct: 157 ILSLQAIQQELAWERCRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVPFSQVSSKTT 215
>gi|347534431|ref|YP_004841101.1| 30S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504487|gb|AEN99169.1| 40S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 405
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G LLS RRL W +++ E I VK T GGL+ +G+R F+P +
Sbjct: 90 GSYLLSIRRLEALKVWDEIKEKADKGENITVKVTRPVRGGLVVNADGVRGFIPAS 144
>gi|357018753|ref|ZP_09081016.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC
19527]
gi|356481471|gb|EHI14576.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC
19527]
Length = 478
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +EP++ E GGL
Sbjct: 79 VVSVGDQVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 ILDI-GLRGFLPAS 151
>gi|148379145|ref|YP_001253686.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502]
gi|148288629|emb|CAL82710.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502]
Length = 381
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 228 MVRGKMGIVKDDDAIA----MSGGSGPGRPVVETGTVLFAEVLGR--TLS---------- 271
+++GK+ V D +A+ +S G P + VV+ V +++ + +S
Sbjct: 20 LLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEVNDGE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LLS ++ AW ++ + + E +E+K E GG + I+G+R F+P +++
Sbjct: 80 GNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQI 136
>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
Length = 495
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +K+ +EP++ E GGL
Sbjct: 85 VVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGL 144
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 145 ILDI-GLRGFLPAS 157
>gi|433608430|ref|YP_007040799.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
gi|407886283|emb|CCH33926.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
Length = 498
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +K+ +EP++ E GGL
Sbjct: 85 VVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGL 144
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 145 ILDI-GLRGFLPAS 157
>gi|153931066|ref|YP_001383520.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397]
gi|153935687|ref|YP_001387069.1| 30S ribosomal protein S1 [Clostridium botulinum A str. Hall]
gi|152927110|gb|ABS32610.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397]
gi|152931601|gb|ABS37100.1| ribosomal protein S1 [Clostridium botulinum A str. Hall]
Length = 387
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 228 MVRGKMGIVKDDDAIA----MSGGSGPGRPVVETGTVLFAEVLGR--TLS---------- 271
+++GK+ V D +A+ +S G P + VV+ V +++ + +S
Sbjct: 26 LLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEVNDGE 85
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LLS ++ AW ++ + + E +E+K E GG + I+G+R F+P +++
Sbjct: 86 GNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQI 142
>gi|158320593|ref|YP_001513100.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140792|gb|ABW19104.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 378
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +R+ W + +IK+ +E K E GG++ G+R F+P ++L R
Sbjct: 84 GNVLLSKKRVDLTKGWDDLEKIKEAESLVETKVIEAVKGGVVAIARGVRCFIPASQLSDR 143
Query: 332 -VNNF 335
V+N
Sbjct: 144 FVDNL 148
>gi|406947536|gb|EKD78447.1| RNA binding S1 protein [uncultured bacterium]
Length = 388
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
S R+ K AW ++ ++ NE ++ + + N GGL+ R+ + FLP ++L
Sbjct: 92 SFRQAGHKKAWEKLEHLQGANEIVDAQIMDANKGGLIVRVGHVSGFLPVSQL 143
>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
Length = 489
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +++ EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|357038551|ref|ZP_09100348.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum gibsoniae DSM 7213]
gi|355359343|gb|EHG07105.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum gibsoniae DSM 7213]
Length = 693
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 39/168 (23%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+VE K GD V GVVV N++++ V+VGA G V+P+ +E+ D +D
Sbjct: 312 AVEVKNLKNGDIVTGVVVQVNQDEVLVDVGAKSEG------VIPI--RELSNFSVDSPQD 363
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
+ K+ ++K +D GR +LS +
Sbjct: 364 VVKVGDEIKVYVLKSEDN-----------------------------EGRVILSKEKADA 394
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
+ AW R+ + + + E GGLL + G+RAFLP A L+ R
Sbjct: 395 EEAWARLEETMNEGQVVSGSVREVVKGGLLVDV-GVRAFLP-ASLVDR 440
>gi|330839082|ref|YP_004413662.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
gi|329746846|gb|AEC00203.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
Length = 378
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R R +AW + +K+ + ++ + T+ GGL+ + GLR F+P +++
Sbjct: 89 VSKVRADRMVAWKEIEALKEDGQTVQAQITQVVKGGLVASVSGLRGFIPASQM 141
>gi|406949320|gb|EKD79835.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 366
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G+ LLS +R W + + ++VK E N GG++ R +GLR F+P ++
Sbjct: 89 GQILLSLKRAMFDKLWQMLEDYLKNETEVQVKTVELNRGGMIVRWQGLRGFVPSSQF 145
>gi|260887148|ref|ZP_05898411.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
ATCC 35185]
gi|260863210|gb|EEX77710.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
ATCC 35185]
Length = 373
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R R +AW + +K+ + ++ + T+ GGL+ + GLR F+P +++
Sbjct: 84 VSKVRADRMVAWKEIEALKEDGQTVQAQITQVVKGGLVASVSGLRGFIPASQM 136
>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
Length = 493
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q+K+ + +E E GGL
Sbjct: 85 VVEVGDKVEALVLQKEDKEGRLILSKKRAQYERAWGTIEQVKEEDGVVEGAVIEVVKGGL 144
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 145 ILDI-GLRGFLPAS 157
>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
Length = 486
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW V ++ EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAVEELHAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|380302401|ref|ZP_09852094.1| 30S ribosomal protein S1 [Brachybacterium squillarum M-6-3]
Length = 494
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + QIK+ + + E GGL
Sbjct: 77 VVEVGDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDEGVVTGRVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 IVDI-GLRGFLPAS 149
>gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
Length = 422
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW+R+ + E +E + E GGL+ I GLR FLP + + L
Sbjct: 96 GRLVLSKKRAEYERAWNRIEEKFNTGENVEGEVIEVVKGGLILDI-GLRGFLPASLVDLR 154
Query: 331 RVNNFT 336
RV + T
Sbjct: 155 RVKDLT 160
>gi|406992102|gb|EKE11509.1| RNA binding S1 protein [uncultured bacterium]
Length = 413
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
LS R + AW + + E I K N GGLL + G+ FLP ++L S+
Sbjct: 112 LSVREASYEKAWEDIESKRDTQEKISTKVLSANKGGLLVEVNGISGFLPVSQLSSK 167
>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
ATCC 33806]
gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
ATCC 33806]
gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
Length = 493
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +E + E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEAVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|376261325|ref|YP_005148045.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Clostridium sp. BNL1100]
gi|373945319|gb|AEY66240.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Clostridium sp. BNL1100]
Length = 672
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +R+ W + + +P++V+ TE GG++ G+R F+P +++ R
Sbjct: 364 GNVLLSKKRVDAVKGWDVIESAFENKQPVKVRVTEKVNGGVIGNASGVRVFIPASQISDR 423
Query: 332 -VNNFTELKEKV 342
V + +E +++
Sbjct: 424 FVKDLSEFVKQI 435
>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
Length = 691
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LSTRR+ W +R+ + ++ +E T N GGL R+ G+ F+P +++
Sbjct: 358 GNVSLSTRRVEGMKNWKNLREAYENDQTVEGDVTGANKGGLTARVMGINGFVPASQI 414
>gi|154497962|ref|ZP_02036340.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
29799]
gi|150272952|gb|EDN00109.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 649
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G LS +RL +W + Q ++ + +E TE N GG++ I+G+R F+P ++ L
Sbjct: 366 GVVTLSKKRLDTVKSWDDIEQAREDHTTVEGVVTEENKGGIVVSIKGVRVFVPASQTGLP 425
Query: 331 RVNNFTELKEK 341
R +EL +K
Sbjct: 426 RETPMSELLKK 436
>gi|406885585|gb|EKD32746.1| RNA binding S1 protein [uncultured bacterium]
Length = 374
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+G LS R +K AW ++Q+ +P+ VK E N GGL+ +++ FLP ++L
Sbjct: 87 NGEMELSFRFAGQKKAWDELKQLFAQGKPVMVKILEANKGGLIVKLQNTIGFLPVSQL 144
>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
Length = 486
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW V ++ EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAVEELHAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
Length = 692
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LSTRR+ W +R+ + ++ +E T N GGL R+ G+ F+P +++
Sbjct: 358 GNVALSTRRVEGMKNWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQI 414
>gi|298491699|ref|YP_003721876.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298233617|gb|ADI64753.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 301
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W + Q+++ ++ I+ + T N GG+ + LR F+P++ L R
Sbjct: 96 GQVTLSRKQLEIQHLWDTLTQMQENSQTIQARVTGVNKGGITVEVLSLRGFIPRSHLSER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|344231907|gb|EGV63786.1| phosphatidylinositol-4 kinase [Candida tenuis ATCC 10573]
Length = 1909
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 103 NGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESI-DVDDKVGED 161
+GV ++++KS KP + A APF+ FK R E+++E G +V + E KVG+D
Sbjct: 1602 DGVVIDINRKSGKPLQSHAKAPFMATFKIRKEVEDIDEYGEKVLIPIEKWQSAIFKVGDD 1661
>gi|385653141|ref|ZP_10047694.1| 30S ribosomal protein S1 [Leucobacter chromiiresistens JG 31]
Length = 481
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW V +IK+ + E
Sbjct: 76 PGE-VVEVGDSVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENEGVVTGTVIEVV 134
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFT 336
GGL+ I GLR FLP + + L RV + T
Sbjct: 135 KGGLIVDI-GLRGFLPASLIELRRVRDLT 162
>gi|331268721|ref|YP_004395213.1| hypothetical protein CbC4_0536 [Clostridium botulinum BKT015925]
gi|329125271|gb|AEB75216.1| rpsA [Clostridium botulinum BKT015925]
Length = 387
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS ++ W + + N +EVK E GG++ I G+R F+P +++ +S
Sbjct: 89 GNVVLSKKKADIARTWRNLNNAFKNNTVLEVKVAEVVKGGVIAYINGIRGFIPASQISIS 148
Query: 331 RVNNFTELKEKV 342
V + T EKV
Sbjct: 149 FVKDLTSFVEKV 160
>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
Length = 416
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + + +E T+ GGL+ + G+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGGLVVDVAGVRGFVPASMIENR 147
>gi|358446728|ref|ZP_09157270.1| 30S ribosomal protein S1 [Corynebacterium casei UCMA 3821]
gi|356607311|emb|CCE55615.1| 30S ribosomal protein S1 [Corynebacterium casei UCMA 3821]
Length = 489
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +++ EP+ E GGL
Sbjct: 77 VVEVGDQVDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 692
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LSTRR+ W +R+ + ++ +E T N GGL R+ G+ F+P +++
Sbjct: 358 GNVALSTRRVEGMKNWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQI 414
>gi|332711689|ref|ZP_08431620.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332349667|gb|EGJ29276.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332688375|gb|AEE88267.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 285
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W + ++++ + ++V+ + N GG+ + GLR F+P++ LS+
Sbjct: 80 GQVTLSRRQLEIKQVWDGLVELQENGKSLDVRVSGVNKGGVTVDVRGLRGFIPRSH-LSQ 138
Query: 332 VNNFTEL 338
+N L
Sbjct: 139 HDNLDSL 145
>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
Length = 493
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG +VE G + A VL + GR +LS +R + AW + QIK+ + + E
Sbjct: 74 PGE-IVEVGDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDEGVVTGRVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKA 326
GGL+ I GLR FLP +
Sbjct: 133 KGGLIVDI-GLRGFLPAS 149
>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
Length = 487
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +++ EP+ E GGL
Sbjct: 77 VVEVGDEVDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|401565425|ref|ZP_10806263.1| S1 RNA binding domain protein [Selenomonas sp. FOBRC6]
gi|400187174|gb|EJO21370.1| S1 RNA binding domain protein [Selenomonas sp. FOBRC6]
Length = 389
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
R VV+ G V+ + + LG G LS + AW + +I++ E +E K +
Sbjct: 61 ARDVVKVGDVIDVYIKSLGGDNGGS--LSKVEADKMAAWKVIEEIQEKGETVEAKIAKEV 118
Query: 309 TGGLLTRIEGLRAFLPKAEL 328
GGL+ + GLR F+P +++
Sbjct: 119 KGGLVAYVMGLRGFIPASQM 138
>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 484
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFT 336
+ I GLR FLP + + + RV + +
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLS 162
>gi|294657189|ref|XP_002770411.1| DEHA2E03982p [Debaryomyces hansenii CBS767]
gi|199432505|emb|CAR65757.1| DEHA2E03982p [Debaryomyces hansenii CBS767]
Length = 1903
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 87 NEELELLN-KPNLVPISN--GVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGS 143
+EE+ ++ KP + SN GV ++++KS KP + A APF+ FK + ++V+E G
Sbjct: 1577 DEEMAIIEVKPGVYLPSNPDGVVVDINRKSGKPLQSHAKAPFMATFKIKKDVDDVDESGE 1636
Query: 144 EVGVSRESI-DVDDKVGED 161
+V E KVG+D
Sbjct: 1637 QVKTQIEKWQSAIFKVGDD 1655
>gi|334127959|ref|ZP_08501861.1| ribosomal protein S1 [Centipeda periodontii DSM 2778]
gi|333388680|gb|EGK59854.1| ribosomal protein S1 [Centipeda periodontii DSM 2778]
Length = 384
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
R VV+ G + + + LG G LS + AW + +IK+ E +E K +
Sbjct: 56 ARDVVKVGDKIDVYIKSLGGDNGGS--LSKVEADKMAAWKDIEEIKEKGETVEAKIAKEV 113
Query: 309 TGGLLTRIEGLRAFLPKAEL 328
GGL+ + GLR F+P +++
Sbjct: 114 KGGLVAYVMGLRGFIPASQM 133
>gi|429736001|ref|ZP_19269921.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156559|gb|EKX99188.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 384
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
R VV+ G V+ + + LG G LS + AW + +I++ E +E K +
Sbjct: 56 ARDVVKVGDVIDVYIKSLGGDNGGS--LSKVEADKMAAWKVIEEIQEKGETVEAKIAKEV 113
Query: 309 TGGLLTRIEGLRAFLPKAEL 328
GGL+ + GLR F+P +++
Sbjct: 114 KGGLVAYVMGLRGFIPASQM 133
>gi|186681340|ref|YP_001864536.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186463792|gb|ACC79593.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 300
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++++ + ++V+ N GG+ I LR F+P++ L R
Sbjct: 96 GQVTLSRKQLEIQHIWERLAEMQENAQTVQVRVMGVNKGGVTVDILSLRGFIPRSHLAER 155
Query: 332 VN 333
N
Sbjct: 156 DN 157
>gi|444433042|ref|ZP_21228188.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
gi|443886106|dbj|GAC69909.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
Length = 493
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + Q+K+ +E ++ E GGL+ I GLR FLP +
Sbjct: 99 GRLILSKKRAQYERAWGTIEQLKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS 152
>gi|346311773|ref|ZP_08853773.1| hypothetical protein HMPREF9452_01642 [Collinsella tanakaei YIT
12063]
gi|345899960|gb|EGX69793.1| hypothetical protein HMPREF9452_01642 [Collinsella tanakaei YIT
12063]
Length = 393
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW+R+ + E +E + E GGL+ I GLR FLP + + L
Sbjct: 96 GRLVLSKKRAEYERAWNRIEEKFNAGENVEGEVIEVVKGGLILDI-GLRGFLPASLVDLR 154
Query: 331 RVNNFT 336
RV + T
Sbjct: 155 RVKDLT 160
>gi|340992802|gb|EGS23357.1| phosphatidylinositol-4- kinase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1855
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 103 NGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDK 162
+GV +D+KS KP + A APF+ F+ R + V EGSE + E+ DVD+KV
Sbjct: 1536 DGVVVGIDRKSGKPLQSHAKAPFMATFRIRKNKGNV--EGSEEMI--EAGDVDNKVVTQA 1591
Query: 163 VSVEYYE 169
++E ++
Sbjct: 1592 NTIEVWQ 1598
>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
33035]
gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
33035]
Length = 486
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +++ EP+ E GGL
Sbjct: 77 VVEVGDEVDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|167044666|gb|ABZ09337.1| putative S1 RNA binding domain protein [uncultured marine
microorganism HF4000_APKG7H23]
Length = 379
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS + + WHR++Q + + + +N GG + +EGL+AF+P ++++
Sbjct: 92 GQAILSLDKAQGEEVWHRLQQCAEAGQGVTGTIVGFNRGGAVVDVEGLQAFVPLSQMVLS 151
Query: 332 VNNFTELKEKVS 343
+ + E ++
Sbjct: 152 IQAGGDTAEALA 163
>gi|403386467|ref|ZP_10928524.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Clostridium sp. JC122]
Length = 556
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G ++S + R+ + +I NE I VK E GG++ +G++ F+P + L LS
Sbjct: 282 GYIVVSKTEIEREGVQKELEEIYNNNEQINVKIVEVVKGGVIATYKGIKVFIPASHLSLS 341
Query: 331 RVNNFTELK 339
RVN+ K
Sbjct: 342 RVNDLASFK 350
>gi|153811995|ref|ZP_01964663.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
gi|149831894|gb|EDM86980.1| S1 RNA binding domain protein [Ruminococcus obeum ATCC 29174]
Length = 301
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G LLS +AW +++++K+ E ++V G++ +EG+R F+P ++L
Sbjct: 84 GNILLSRVEAVDVLAWDKLKELKESGEVLDVVVKGITNAGVIAYVEGVRGFIPASKL 140
>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
Length = 486
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR LLS +R + AW ++ ++K+ + + E GGL
Sbjct: 80 VVEVGDQVEALVLQKEDKEGRLLLSKKRAQYERAWSQIEEVKEADGVVTGTVIEVVKGGL 139
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 140 ILDI-GLRGFLPAS 152
>gi|402834209|ref|ZP_10882813.1| S1 RNA binding domain protein [Selenomonas sp. CM52]
gi|402278788|gb|EJU27843.1| S1 RNA binding domain protein [Selenomonas sp. CM52]
Length = 378
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+S R R +AW + +K+ + ++ + T+ GGL+ + GLR F+P +++
Sbjct: 89 VSKVRADRMVAWKEIEALKEEGKTVQAQVTQVVKGGLVASVNGLRGFIPASQM 141
>gi|302391808|ref|YP_003827628.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
arabaticum DSM 5501]
gi|302203885|gb|ADL12563.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
arabaticum DSM 5501]
Length = 676
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G +LS ++ ++ +W RV ++ + +E IE + T+ GGL+ + GLR F+P + +
Sbjct: 361 GNIVLSKKKQDQEKSWQRVEKVYENDEIIEAEITKEVKGGLVADV-GLRGFIPASHV 416
>gi|425734868|ref|ZP_18853185.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
gi|425480804|gb|EKU47968.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
Length = 492
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 42/164 (25%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ V++G G +L++E+ +K D
Sbjct: 32 TIKYF--NDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLSREL-------------SIKHD 76
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
+ PG VVE G + A VL + GR +LS +R
Sbjct: 77 VD------------------------PGE-VVEVGDPIEALVLQKEDKEGRLMLSKKRAQ 111
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
+ AW + +IK+ + + E GGL+ I GLR FLP +
Sbjct: 112 YERAWGDIEKIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS 154
>gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
44291]
gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
44291]
Length = 489
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +++ ++P+ E GGL
Sbjct: 77 VVEVGDEVDALVLTKEDKEGRLILSKKRAQYERAWGTIEELQNNDQPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 137 ILDI-GLRGFLPAS 149
>gi|168205615|ref|ZP_02631620.1| ribosomal protein S1 family [Clostridium perfringens E str.
JGS1987]
gi|170662936|gb|EDT15619.1| ribosomal protein S1 family [Clostridium perfringens E str.
JGS1987]
Length = 378
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS-R 331
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRR 143
Query: 332 VNNFTELKEK 341
+ N EL EK
Sbjct: 144 IENLEELVEK 153
>gi|225575700|ref|ZP_03784310.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
10507]
gi|225037080|gb|EEG47326.1| S1 RNA binding domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 301
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPV--- 254
G +LT V+ + DKE+ DLK E G++ +D PG V
Sbjct: 22 GEILTGTVIGITDKEVTL---DLKYYTE--------GVIHVEDF-----SREPGFHVKDE 65
Query: 255 VETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
V TG + A V+ + +G LLS +AW ++ +K+ ++V G++
Sbjct: 66 VHTGDEVSAMVMSKDDGNGNILLSKVEADDVLAWEKLNTLKEEQTVLDVVIKGVVKSGVV 125
Query: 314 TRIEGLRAFLPKAEL-LSRVNNFTE 337
+EG+R F+P ++L LS V+N E
Sbjct: 126 AYVEGVRGFIPASKLSLSYVDNLEE 150
>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
Length = 501
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK+ + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
Length = 402
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + +D A+ GS +L V GR
Sbjct: 62 DEILVDIGAKAEGIVPSREMQSLPAEDRAALRIGS----------ELLVFVVQSEDKEGR 111
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
+LS + ++ +W ++ + + I + +N GGLL ++G+R F+P +++
Sbjct: 112 AILSVDKARQEKSWRMLQTAFERGDVITARVVNYNKGGLLVNLDGVRGFVPASQV 166
>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
20162]
Length = 499
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 84 VVNVGDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 143
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 144 ILDI-GLRGFLPAS 156
>gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium
HF0200_09I09]
Length = 677
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
VL + T G+ LLS R + W ++ + E E + T +N GGLL +EG+
Sbjct: 154 VLVYVMQAETDEGQVLLSIDRARGEQGWRILQDRFENGEIFEAEITGFNKGGLLANVEGV 213
Query: 320 RAFLPKAELL 329
AF+P ++++
Sbjct: 214 NAFIPMSQVV 223
>gi|229492760|ref|ZP_04386561.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
gi|453068500|ref|ZP_21971778.1| 30S ribosomal protein S1 [Rhodococcus qingshengii BKS 20-40]
gi|229320419|gb|EEN86239.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
gi|452765989|gb|EME24242.1| 30S ribosomal protein S1 [Rhodococcus qingshengii BKS 20-40]
Length = 495
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 ILDI-GLRGFLPAS 151
>gi|226185916|dbj|BAH34020.1| probable 30S ribosomal protein S1 [Rhodococcus erythropolis PR4]
Length = 495
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 ILDI-GLRGFLPAS 151
>gi|355574274|ref|ZP_09044117.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
str. F0356]
gi|354818564|gb|EHF03053.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
str. F0356]
Length = 390
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW+RV + E +E + E GGL+ I GLR FLP + + L
Sbjct: 96 GRLILSKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKGGLILDI-GLRGFLPASLVDLR 154
Query: 331 RVNNF 335
RV +
Sbjct: 155 RVKDL 159
>gi|291562264|emb|CBL41080.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
Length = 298
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 197 LGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDA-----IAMSGGSGPG 251
+G ++T V+ + D D ++ DLK A+ G+++ DD M+ PG
Sbjct: 20 VGDVVTGTVIDVTD---DAVIVDLKAYAD--------GVIRKDDLSEDPDFNMAEMIHPG 68
Query: 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311
+ T TV+ G +LS + + +AW +++ + + + VK E G
Sbjct: 69 DEI--TATVMAT----NDGEGNMVLSKKEANQVLAWDKLKNMMEERTVVPVKIAEIVNAG 122
Query: 312 LLTRIEGLRAFLPKAEL 328
+ +EG+R F+P + L
Sbjct: 123 AVAYLEGIRGFIPASRL 139
>gi|385303594|gb|EIF47658.1| phosphatidylinositol 4-kinase [Dekkera bruxellensis AWRI1499]
Length = 1834
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 103 NGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSE 144
+GV ++D+KS KP + A APF+ FK R +++ ++ SE
Sbjct: 1523 DGVVVDIDRKSGKPLQSHAKAPFMATFKIRRKVDQISDDSSE 1564
>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
Length = 441
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMV 229
PKPGD V G VV +++ + V+VG G ++PL E+ DA
Sbjct: 53 PKPGDIVRGQVVRVSDDSIMVDVGYKSEG------IIPL--NELSHRPLRSAHDAG---- 100
Query: 230 RGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
+K D + + VL + G G +S RR ++AW
Sbjct: 101 ------LKVGDEVQV--------------VVLSVDTKG---EGGLRISKRRADEQLAWAE 137
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
V + + E IE + TE GGL+ + GLRAFLP +++
Sbjct: 138 VERKFEAGEVIEAEVTEAVKGGLVVDL-GLRAFLPASQV 175
>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
Length = 392
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW+RV + E +E + E GGL
Sbjct: 77 VVALGDTIEALVLQKEDKEGRLILSKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNF 335
+ I GLR FLP + + L RV +
Sbjct: 137 ILDI-GLRGFLPASLVDLRRVKDL 159
>gi|237839981|ref|XP_002369288.1| 30S ribosomal protein S1, putative [Toxoplasma gondii ME49]
gi|211966952|gb|EEB02148.1| 30S ribosomal protein S1, putative [Toxoplasma gondii ME49]
Length = 1229
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + L R AW ++ +++ + ++ + GGL+ R+ GLR FLP ++L S V
Sbjct: 911 VLSLQTLRRIAAWEQLLALQREDRALKATVLHAHKGGLVVRVLGLRGFLPVSQLPSFVKP 970
Query: 335 FTEL 338
++L
Sbjct: 971 SSQL 974
>gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM
44985]
gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985]
Length = 482
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G V+ A VL + GR +LS +R + AW V K+ +E ++ E GGL
Sbjct: 79 VVSVGDVVEALVLTKEDKEGRLILSKKRAQYERAWGEVEAHKEKDESVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKA 326
+ I GLR FLP +
Sbjct: 139 IVDI-GLRGFLPAS 151
>gi|401417760|ref|XP_003873372.1| putative exosome complex exonuclease [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489602|emb|CBZ24859.1| putative exosome complex exonuclease [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 307
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 108 EVDKKSEKPDEEEALAPFLKFF--KPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDKVSV 165
E D+K EE L F F P D A E G V I+V D+V K +
Sbjct: 16 EADQKLSTSSEEVYLRGFNTFAGNNPSDLALFHEGAGEIVAAISGHIEVTDRVISVKGLL 75
Query: 166 EYYEPKPGDFVIGVV--VSGNENKLDVN 191
Y+P+ GD V+G + V+GN+ ++DVN
Sbjct: 76 PRYQPEIGDVVVGRILEVTGNKWQVDVN 103
>gi|161611290|ref|YP_139113.2| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
gi|161936373|ref|YP_141003.2| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
gi|386086285|ref|YP_006002159.1| Putative ribosomal protein S1-like DNA-binding protein
[Streptococcus thermophilus ND03]
gi|386344285|ref|YP_006040449.1| 30S ribosomal protein S1 [Streptococcus thermophilus JIM 8232]
gi|387909377|ref|YP_006339683.1| 30S ribosomal protein S1 [Streptococcus thermophilus MN-ZLW-002]
gi|312277998|gb|ADQ62655.1| Putative ribosomal protein S1-like DNA-binding protein
[Streptococcus thermophilus ND03]
gi|339277746|emb|CCC19494.1| 30S ribosomal protein S1 [Streptococcus thermophilus JIM 8232]
gi|387574312|gb|AFJ83018.1| 30S ribosomal protein S1 [Streptococcus thermophilus MN-ZLW-002]
Length = 400
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 34/169 (20%)
Query: 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFM 228
E GD V V+S + ++ +V + + +LT+ L + D + DL KD E
Sbjct: 13 EVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELT---NDRDANVADLVKDGETLE 69
Query: 229 VRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWH 288
V +V D T TV + L+S +RL + AW
Sbjct: 70 VLVLRQVVGKD-----------------TDTVTY------------LVSKKRLEARKAWD 100
Query: 289 RVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
++ + + E + VK T GGL EGLR F+P + + +R TE
Sbjct: 101 KL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMIDTRFVRNTE 147
>gi|357235302|ref|ZP_09122645.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
gi|356883284|gb|EHI73484.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
Length = 398
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREGEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|445374299|ref|ZP_21426347.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5460]
gi|445388804|ref|ZP_21428062.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5461]
gi|444750552|gb|ELW75354.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5461]
gi|444750649|gb|ELW75445.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5460]
Length = 400
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 34/169 (20%)
Query: 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFM 228
E GD V V+S + ++ +V + + +LT+ L + D + DL KD E
Sbjct: 13 EVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELT---NDRDANVADLVKDGETLE 69
Query: 229 VRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWH 288
V +V D T TV + L+S +RL + AW
Sbjct: 70 VLVLRQVVGKD-----------------TDTVTY------------LVSKKRLEARKAWD 100
Query: 289 RVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
++ + + E + VK T GGL EGLR F+P + + +R TE
Sbjct: 101 KL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMIDTRFVRNTE 147
>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain-containing protein [Kyrpidia tusciae DSM
2912]
gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Kyrpidia tusciae DSM 2912]
Length = 383
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS + + + AW R++Q + E EV+ + GGL+ + G+RAF+P A L+ R
Sbjct: 78 GKLVLSKKAVDAEKAWERLQQRFESQETFEVQVADVVKGGLVADV-GVRAFIP-ASLVER 135
Query: 332 --VNNFTELK 339
V +F+E K
Sbjct: 136 HFVEDFSEYK 145
>gi|221484669|gb|EEE22963.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221504854|gb|EEE30519.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 1229
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + L R AW ++ +++ + ++ + GGL+ R+ GLR FLP ++L S V
Sbjct: 911 VLSLQTLRRIAAWEQLLALQREDRALKATVLHAHKGGLVVRVLGLRGFLPVSQLPSFVKP 970
Query: 335 FTEL 338
++L
Sbjct: 971 SSQL 974
>gi|427414340|ref|ZP_18904530.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
ratti ACS-216-V-Col6b]
gi|425714716|gb|EKU77719.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
ratti ACS-216-V-Col6b]
Length = 631
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 201 LTKEVLPLYDKEMDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSG---------- 246
+ KEV+ + E + LL + AE+F +V G + V+DD A G
Sbjct: 265 IIKEVIDTMN-EFEQLLANEADWAEDFKKGTVVEGTVVSVEDDKAYVSFGYKTEATLNRT 323
Query: 247 -----GSGPGRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPI 300
+ V++ G + A ++ P+ LS RL + W V++ ++ +EPI
Sbjct: 324 EIAYPAPASAKDVLKEGDQIKAVIMNHIKEDNPIYLSITRLAKDEDWQYVQEAQEKDEPI 383
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLP 324
K + GL+ ++ LR F+P
Sbjct: 384 ICKGVDAIPAGLVVTVKSLRGFIP 407
>gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415]
gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415]
Length = 400
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREGEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|116627481|ref|YP_820100.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMD-9]
gi|116100758|gb|ABJ65904.1| SSU ribosomal protein S1P [Streptococcus thermophilus LMD-9]
Length = 400
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 34/169 (20%)
Query: 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFM 228
E GD V V+S + ++ +V + + +LT+ L + D + DL KD E
Sbjct: 13 EVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELT---NDRDANVADLVKDGETLE 69
Query: 229 VRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWH 288
V +V D T TV + L+S +RL + AW
Sbjct: 70 VLVLRQVVGKD-----------------TDTVTY------------LVSKKRLEARKAWD 100
Query: 289 RVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
++ + + E + VK T GGL EGLR F+P + + +R TE
Sbjct: 101 KL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMIDTRFVRNTE 147
>gi|146081162|ref|XP_001464184.1| putative exosome complex exonuclease [Leishmania infantum JPCM5]
gi|398012359|ref|XP_003859373.1| exosome complex exonuclease, putative [Leishmania donovani]
gi|134068275|emb|CAM66561.1| putative exosome complex exonuclease [Leishmania infantum JPCM5]
gi|322497588|emb|CBZ32661.1| exosome complex exonuclease, putative [Leishmania donovani]
Length = 307
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 108 EVDKKSEKPDEEEALAPFLKFF--KPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDKVSV 165
+ D+K EE L F F P D A E G V I+V ++V K V
Sbjct: 16 DADQKLSTSSEEVYLRGFNTFAGNNPSDVALLHEGAGEIVAAISGHIEVTERVISVKGLV 75
Query: 166 EYYEPKPGDFVIGVV--VSGNENKLDVN 191
Y+P+ GD V+G + VSGN+ ++DVN
Sbjct: 76 PRYQPEIGDVVVGRILEVSGNKWQVDVN 103
>gi|298242788|ref|ZP_06966595.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555842|gb|EFH89706.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
Length = 507
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 38/160 (23%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
K GD V GV+V +++++ V++G G + T+E LP
Sbjct: 67 KRGDVVEGVIVRIDQDEILVDIGLKSEGVLSTRE-LP----------------------- 102
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
S G G + VL + T G +LS +R + W
Sbjct: 103 --------------SSGYGSFEELHNDDKVLVYVIQPETSEGHAVLSLKRANTERQWRIA 148
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+ + E ++ K ++N GGL+ + G+R F+P +++L+
Sbjct: 149 EEQFKNGELLKAKVIDFNKGGLIVDVNGIRGFVPISQILN 188
>gi|407004109|gb|EKE20559.1| RNA binding S1 protein [uncultured bacterium]
Length = 460
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
LS R + AW + K E ++ + + N GGL+ I G+ FLP ++L S
Sbjct: 115 LSIREASYEKAWEDLESKKDNEEAVDTRVLDANKGGLMVEINGIGGFLPVSQLAS 169
>gi|319939079|ref|ZP_08013443.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
gi|335030671|ref|ZP_08524155.1| 30S ribosomal protein S1 [Streptococcus anginosus SK52 = DSM 20563]
gi|319812129|gb|EFW08395.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
gi|333771277|gb|EGL48230.1| 30S ribosomal protein S1 [Streptococcus anginosus SK52 = DSM 20563]
Length = 399
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 40/170 (23%)
Query: 171 KPGDFVIGVVVSGNENKLDVNV-GADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAE--EF 227
+PGD V V++ + N+ +V + G + G + +E+ D+E D + DL K E E
Sbjct: 15 EPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELT--NDREAD--INDLVKPGETLEL 70
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
+V ++ + KD D + L+S +RL + AW
Sbjct: 71 LVLRQV-VGKDTDTVTY------------------------------LVSKKRLEARKAW 99
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
++ + + E + VK T GGL EGLR F+P + L +R TE
Sbjct: 100 DKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVRNTE 147
>gi|434402430|ref|YP_007145315.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428256685|gb|AFZ22635.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 300
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +V GK+ + D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRAVTDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VL F + + G+ LS ++L + W R+ ++++ ++ ++V+ N GG+
Sbjct: 77 VLPMQEELEFLIIRDQDAEGQVTLSRKQLEIQHIWDRLLEMQENSQTVQVRVMGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVN 333
+ LR F+P++ L R N
Sbjct: 137 TVDLLSLRGFIPRSHLQERDN 157
>gi|302023681|ref|ZP_07248892.1| 30S ribosomal protein S1 [Streptococcus suis 05HAS68]
Length = 156
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + + SR
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTR 144
Query: 335 FTEL 338
T++
Sbjct: 145 NTDV 148
>gi|83584319|gb|ABC24934.1| plastid 30S ribosomal protein S1 [Prototheca wickerhamii]
Length = 292
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLN----EPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
P+LS + R++ WHR Q+ N E + ++ N GGL++R+ GL FLP +L
Sbjct: 161 PILSAFQYDRQVIWHRGWQLLTCNRESRENVTIRVEGMNGGGLISRVIGLPLFLPFTQL 219
>gi|322385171|ref|ZP_08058818.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
gi|417921709|ref|ZP_12565199.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
gi|321270795|gb|EFX53708.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
gi|342833594|gb|EGU67874.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
Length = 400
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|373115355|ref|ZP_09529529.1| ribosomal protein S1 [Lachnospiraceae bacterium 7_1_58FAA]
gi|371670421|gb|EHO35502.1| ribosomal protein S1 [Lachnospiraceae bacterium 7_1_58FAA]
Length = 650
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
G LS +RL +W + Q ++ + +E TE N GG++ I+G+R F+P ++
Sbjct: 366 GVVTLSKKRLDTVKSWDDIEQAREEHTTVEGVVTEENKGGVVVSIKGVRVFVPASQ 421
>gi|365841809|ref|ZP_09382863.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Flavonifractor
plautii ATCC 29863]
gi|364576961|gb|EHM54256.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Flavonifractor
plautii ATCC 29863]
Length = 650
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
G LS +RL +W + Q ++ + +E TE N GG++ I+G+R F+P ++
Sbjct: 366 GVVTLSKKRLDTVKSWDDIEQAREEHTTVEGVVTEENKGGVVVSIKGVRVFVPASQ 421
>gi|315222942|ref|ZP_07864821.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
gi|315187892|gb|EFU21628.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
Length = 399
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 40/170 (23%)
Query: 171 KPGDFVIGVVVSGNENKLDVNV-GADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAE--EF 227
+PGD V V++ + N+ +V + G + G + +E+ D+E D + DL K E E
Sbjct: 15 EPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELT--NDREAD--INDLVKPGETLEL 70
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
+V ++ + KD D + L+S +RL + AW
Sbjct: 71 LVLRQV-VGKDTDTVTY------------------------------LVSKKRLEARKAW 99
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
++ + + E + VK T GGL EGLR F+P + L +R TE
Sbjct: 100 DKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVRNTE 147
>gi|220929150|ref|YP_002506059.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
cellulolyticum H10]
gi|219999478|gb|ACL76079.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
cellulolyticum H10]
Length = 672
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +R+ + + + +P++VK TE GG++ G+R F+P +++ R
Sbjct: 364 GNVLLSKKRVDAVKGLEVIERAYENKQPVKVKITEKVNGGVIGNASGVRVFIPASQISDR 423
Query: 332 -VNNFTELKEKV 342
V + +E ++V
Sbjct: 424 FVKDLSEFVKQV 435
>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
Length = 501
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
Length = 500
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
Length = 500
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|401682884|ref|ZP_10814773.1| S1 RNA binding domain protein [Streptococcus sp. AS14]
gi|422851572|ref|ZP_16898242.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK150]
gi|422882332|ref|ZP_16928788.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK355]
gi|422884147|ref|ZP_16930596.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK49]
gi|325694460|gb|EGD36369.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK150]
gi|332360264|gb|EGJ38077.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK355]
gi|332360840|gb|EGJ38646.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK49]
gi|400183566|gb|EJO17817.1| S1 RNA binding domain protein [Streptococcus sp. AS14]
Length = 400
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|422876350|ref|ZP_16922820.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1056]
gi|332361158|gb|EGJ38962.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1056]
Length = 400
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|422878794|ref|ZP_16925260.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1059]
gi|422928642|ref|ZP_16961584.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 29667]
gi|422931617|ref|ZP_16964548.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK340]
gi|332366847|gb|EGJ44588.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1059]
gi|339616284|gb|EGQ20936.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 29667]
gi|339619917|gb|EGQ24492.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK340]
Length = 400
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|322392120|ref|ZP_08065582.1| 30S ribosomal protein S1 [Streptococcus peroris ATCC 700780]
gi|335030475|ref|ZP_08523964.1| 30S ribosomal protein S1 [Streptococcus infantis SK1076]
gi|321145020|gb|EFX40419.1| 30S ribosomal protein S1 [Streptococcus peroris ATCC 700780]
gi|334266014|gb|EGL84501.1| 30S ribosomal protein S1 [Streptococcus infantis SK1076]
Length = 400
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|322388030|ref|ZP_08061636.1| 30S ribosomal protein S1 [Streptococcus infantis ATCC 700779]
gi|417937252|ref|ZP_12580556.1| 30S ribosomal protein S1 [Streptococcus infantis X]
gi|417938043|ref|ZP_12581341.1| 30S ribosomal protein S1 [Streptococcus infantis SK970]
gi|419844254|ref|ZP_14367552.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
gi|421277481|ref|ZP_15728300.1| 30S ribosomal protein S1 [Streptococcus mitis SPAR10]
gi|321141051|gb|EFX36550.1| 30S ribosomal protein S1 [Streptococcus infantis ATCC 700779]
gi|343391133|gb|EGV03708.1| 30S ribosomal protein S1 [Streptococcus infantis SK970]
gi|343398937|gb|EGV11463.1| 30S ribosomal protein S1 [Streptococcus infantis X]
gi|385702038|gb|EIG39190.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
gi|395874733|gb|EJG85815.1| 30S ribosomal protein S1 [Streptococcus mitis SPAR10]
Length = 400
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|55736656|gb|AAV60298.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
gi|55738547|gb|AAV62188.1| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
Length = 417
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 34/169 (20%)
Query: 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFM 228
E GD V V+S + ++ +V + + +LT+ L + D + DL KD E
Sbjct: 30 EVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELT---NDRDANVADLVKDGETLE 86
Query: 229 VRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWH 288
V +V D T TV + L+S +RL + AW
Sbjct: 87 VLVLRQVVGKD-----------------TDTVTY------------LVSKKRLEARKAWD 117
Query: 289 RVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
++ + + E + VK T GGL EGLR F+P + + +R TE
Sbjct: 118 KL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMIDTRFVRNTE 164
>gi|422858422|ref|ZP_16905072.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1057]
gi|327460308|gb|EGF06645.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1057]
Length = 400
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|422846696|ref|ZP_16893379.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK72]
gi|325687504|gb|EGD29525.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK72]
Length = 400
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|422821195|ref|ZP_16869388.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK353]
gi|422823529|ref|ZP_16871717.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK405]
gi|422826386|ref|ZP_16874565.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK678]
gi|422848639|ref|ZP_16895315.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK115]
gi|422854315|ref|ZP_16900979.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK160]
gi|422855474|ref|ZP_16902132.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1]
gi|422860093|ref|ZP_16906737.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK330]
gi|422865451|ref|ZP_16912076.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1058]
gi|422870878|ref|ZP_16917371.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1087]
gi|324991109|gb|EGC23043.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK353]
gi|324992856|gb|EGC24776.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK405]
gi|324994504|gb|EGC26417.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK678]
gi|325689660|gb|EGD31664.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK115]
gi|325696551|gb|EGD38441.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK160]
gi|327462163|gb|EGF08490.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1]
gi|327469991|gb|EGF15455.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK330]
gi|327489845|gb|EGF21635.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1058]
gi|328946259|gb|EGG40403.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1087]
Length = 400
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
Length = 500
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
Length = 500
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
Length = 499
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
Length = 500
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|422862485|ref|ZP_16909117.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK408]
gi|327474468|gb|EGF19874.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK408]
Length = 400
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
Length = 500
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + + +
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPASLVEMR 156
Query: 331 RVNNFT 336
RV + +
Sbjct: 157 RVRDLS 162
>gi|260947484|ref|XP_002618039.1| hypothetical protein CLUG_01498 [Clavispora lusitaniae ATCC 42720]
gi|238847911|gb|EEQ37375.1| hypothetical protein CLUG_01498 [Clavispora lusitaniae ATCC 42720]
Length = 771
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 103 NGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESI-DVDDKVGED 161
+GV ++++KS KP + A APF+ FK R ++ +E G+ V V E KVG+D
Sbjct: 464 DGVLVDINRKSGKPLQSHAKAPFMATFKIRKEVDDFDEYGNIVSVPIEKWQSAIFKVGDD 523
>gi|323351529|ref|ZP_08087183.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66]
gi|322122015|gb|EFX93741.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66]
Length = 400
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|319950983|ref|ZP_08024854.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
gi|319435365|gb|EFV90614.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
Length = 490
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + ++K+ +E ++ E GGL+ I GLR FLP +
Sbjct: 97 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS 150
>gi|418964829|ref|ZP_13516617.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
constellatus SK53]
gi|383344230|gb|EID22399.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
constellatus SK53]
Length = 399
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|417917651|ref|ZP_12561210.1| 30S ribosomal protein S1 [Streptococcus parasanguinis SK236]
gi|342830288|gb|EGU64627.1| 30S ribosomal protein S1 [Streptococcus parasanguinis SK236]
Length = 399
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|154334089|ref|XP_001562190.1| putative exosome complex exonuclease [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060312|emb|CAM37470.1| putative exosome complex exonuclease [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 303
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 108 EVDKKSEKPDEEEALAPFLKFF--KPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDKVSV 165
EV +K +E L F F KP D A E G V I+V D+V K +
Sbjct: 16 EVGQKLSTSSDEVYLRGFNTFAGNKPSDVALLHEGAGEIVAAINGYIEVTDRVISVKGLL 75
Query: 166 EYYEPKPGDFVIGVV--VSGNENKLDVN 191
Y+P+ GD V+G + V+GN+ ++DVN
Sbjct: 76 PRYQPEIGDVVVGRILEVTGNKWQVDVN 103
>gi|414155463|ref|ZP_11411775.1| ribosomal protein S1 [Streptococcus sp. F0442]
gi|410873436|gb|EKS21371.1| ribosomal protein S1 [Streptococcus sp. F0442]
Length = 399
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|343525165|ref|ZP_08762121.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|423068486|ref|ZP_17057274.1| hypothetical protein HMPREF9682_00495 [Streptococcus intermedius
F0395]
gi|343397037|gb|EGV09573.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|355366741|gb|EHG14458.1| hypothetical protein HMPREF9682_00495 [Streptococcus intermedius
F0395]
Length = 399
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|312867675|ref|ZP_07727881.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
gi|311096738|gb|EFQ54976.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
Length = 399
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|337281927|ref|YP_004621398.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
gi|419801118|ref|ZP_14326362.1| 30S ribosomal protein S1 [Streptococcus parasanguinis F0449]
gi|335369520|gb|AEH55470.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
gi|385692735|gb|EIG23406.1| 30S ribosomal protein S1 [Streptococcus parasanguinis F0449]
Length = 399
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|226227195|ref|YP_002761301.1| 30S ribosomal protein S1 [Gemmatimonas aurantiaca T-27]
gi|226090386|dbj|BAH38831.1| 30S ribosomal protein S1 [Gemmatimonas aurantiaca T-27]
Length = 585
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS ++ W R+R + ++P+E + GG++ + G+ AFLP +++ L
Sbjct: 119 GSVVLSKKKADFMRVWERIRVAYESDQPVEGTLVKKIKGGVVVDLMGVDAFLPGSQIALR 178
Query: 331 RVNNFTEL 338
RV N EL
Sbjct: 179 RVPNIDEL 186
>gi|322389474|ref|ZP_08063026.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
gi|321143852|gb|EFX39278.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
Length = 399
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
>gi|449310616|gb|AGE92535.1| exosome complex exonuclease ribosomal RNA processing protein 4,
partial [Leishmania braziliensis]
Length = 296
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 108 EVDKKSEKPDEEEALAPFLKFF--KPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDKVSV 165
EV +K +E L F F KP D A E G V I+V D+V K +
Sbjct: 9 EVGQKLSTSSDEVYLRGFNTFAGNKPSDVALLHEGAGEIVAAINGYIEVTDRVISVKGLL 68
Query: 166 EYYEPKPGDFVIGVV--VSGNENKLDVN 191
Y+P+ GD V+G + V+GN+ ++DVN
Sbjct: 69 PRYQPEIGDVVVGRILEVTGNKWQVDVN 96
>gi|262282821|ref|ZP_06060588.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
gi|262261073|gb|EEY79772.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
Length = 401
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
L+S +RL + AW ++ + + E + VK T GGL EGLR F+P + L +R
Sbjct: 87 LVSKKRLEARKAWDKL--VGREEEVVTVKGTRAVKGGLSVEFEGLRGFIPASMLDTRFVR 144
Query: 335 FTE 337
TE
Sbjct: 145 NTE 147
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,475,428,733
Number of Sequences: 23463169
Number of extensions: 241580781
Number of successful extensions: 516468
Number of sequences better than 100.0: 674
Number of HSP's better than 100.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 515609
Number of HSP's gapped (non-prelim): 1013
length of query: 343
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 200
effective length of database: 9,003,962,200
effective search space: 1800792440000
effective search space used: 1800792440000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)