BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019315
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 241 AIAMSGGSGPG-----RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVR 291
A+ SGG PG R VV TG +V LL + +KMAW VR
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVR 64
>pdb|3SQ8|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
Length = 470
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|3SQ5|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
Length = 470
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|3SQ3|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
Length = 470
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|3SQ7|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
Length = 470
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 195 DLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246
D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 107 DIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAMDA 159
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 286 AWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
A+H++ +K+ E + TE T +LT++ L KAE + VN
Sbjct: 88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135
>pdb|3BH1|A Chain A, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|B Chain B, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|C Chain C, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
pdb|3BH1|D Chain D, Crystal Structure Of Protein Dip2346 From Corynebacterium
Diphtheriae
Length = 507
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 187 KLDVNVGADLLGTMLTKEVLP---------LYDK---EMDFLLCDLKKDAEEFMVRGKMG 234
KL + +G L M VLP + D+ E++ L+C KD E +R +G
Sbjct: 32 KLYLEMGGKLFDDMHASRVLPGFTPDNKIAMLDRIKDEVEILVCINAKDLERHKIRADLG 91
Query: 235 IVKDDDAIAM 244
I ++D + +
Sbjct: 92 ISYEEDVLRL 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,880,691
Number of Sequences: 62578
Number of extensions: 336599
Number of successful extensions: 787
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 10
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)