BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019315
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 152
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
G+ +S R L + AW RV ++++ + ++VK T N GG+ +EGLRAF+P++ L
Sbjct: 90 GQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHL 146
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea
GN=rps1 PE=3 SV=1
Length = 263
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + ++V+ +N GG++ +EG+ F+P + L
Sbjct: 88 SRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHL-- 145
Query: 331 RVNNFTE 337
NNF++
Sbjct: 146 --NNFSK 150
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R++ ++AW R RQ++ + ++ K N GG++ +EGLR F+P +++ S+ ++
Sbjct: 162 ILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSK-SS 220
Query: 335 FTELKEK 341
EL EK
Sbjct: 221 AEELLEK 227
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + +W + ++++ + +E+ T N GG++ +EGLR F+P++ L+ +
Sbjct: 91 GQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHK 150
Query: 332 VN 333
N
Sbjct: 151 DN 152
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
GN=rps1 PE=3 SV=2
Length = 263
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
S + +LS RRL AW R+RQ+ + + V +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHL 145
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + +K+ +E ++ E GGL+ I GLR FLP +
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS 151
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GR +LS +R + AW + +K+ +E ++ E GGL+ I GLR FLP +
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDI-GLRGFLPAS 151
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 255 VETGTVLFAEVLGRTLSGRP------LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
V+ G VL VL R + G+ L+S +RL + AW ++ + + E + VK T
Sbjct: 62 VKVGEVLDVLVL-RQVVGKDTDTVTYLVSKKRLEARKAWDKL--VGREEEVVTVKGTRAV 118
Query: 309 TGGLLTRIEGLRAFLPKAELLSR 331
GGL EG+R F+P + L +R
Sbjct: 119 KGGLSVEFEGVRGFIPASMLDTR 141
>sp|Q9NHB0|BGBP1_DROME Gram-negative bacteria-binding protein 1 OS=Drosophila melanogaster
GN=GNBP1 PE=2 SV=2
Length = 494
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 265 VLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP 324
V GR+L G P+LST R+ W R+I + +W++ LL ++G
Sbjct: 343 VDGRSLYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDGQVY--- 399
Query: 325 KAELLSRVNNFTELKE 340
E+L N FTEL E
Sbjct: 400 -GEML---NGFTELDE 411
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
LLS +RL + AW + + + ++ K GGL+ + G+R F+P + + R V+
Sbjct: 124 LLSKKRLDARKAWENLSFAE--GDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVS 181
Query: 334 NFTELKEK 341
+ + K K
Sbjct: 182 DLNQFKNK 189
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 191 NVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGP 250
N G +G +T E++ + +KE+ FL + K+D V K I DDD +
Sbjct: 302 NEGKIYVGASVTGEIIQVSEKEV-FLNINYKRDG----VIPKSEI--DDDGKDL------ 348
Query: 251 GRPVVETGTVLFAEVLG-RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ + G + A+++ + +LS + L R+ + +++ + + V E
Sbjct: 349 -KELFTVGDKIVAKIIKLKDADNYVVLSVKELQREQGYKEIKEAFENKTTLNVVVKEDVK 407
Query: 310 GGLLTRIEGLRAFLPKAEL-LSRVNNFTE 337
GG++ +G+R F+P + + L V+N E
Sbjct: 408 GGIIASYKGIRIFIPASHVELFHVDNLKE 436
>sp|O31431|YBDG_BACSU Uncharacterized protein YbdG OS=Bacillus subtilis (strain 168)
GN=ybdG PE=4 SV=2
Length = 325
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 29 QNGNAKYPLQQSRKFHSFAASF-----RFLRSTHIVFCSQKDVFDDLS 71
QN ++KY +Q + + +FAA F + LR TH ++ Q D LS
Sbjct: 270 QNRHSKYAIQNRKDYEAFAAQFNTADIKELRGTHSIYLYQPDQIYKLS 317
>sp|P37297|STT4_YEAST Phosphatidylinositol 4-kinase STT4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=STT4 PE=1 SV=1
Length = 1900
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 95 KPNLVPISN--GVASEVDKKSEKPDEEEALAPFLKFFK-PRDSAEEVEEEGSEVGVSRES 151
KP++ SN GV ++D+KS KP + A APF+ FK +D + + + EV + +
Sbjct: 1585 KPDVYLPSNPDGVVIDIDRKSGKPLQSHAKAPFMATFKIKKDVKDPLTGKNKEVEKWQAA 1644
Query: 152 IDVDDKVGED 161
I KVG+D
Sbjct: 1645 I---FKVGDD 1651
>sp|Q8REI1|Y1121_FUSNN UPF0371 protein FN1121 OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=FN1121 PE=3 SV=1
Length = 506
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 184 NENKLDVNVGADLLGTMLTKEVLPLYDK------------EMDFLLCDLKKDAEEFMVRG 231
N +KL + G LL + K VLP +D+ +++ ++C D E +RG
Sbjct: 24 NHDKLYIEFGGKLLADLHAKRVLPGFDENAKIKVLNKLKDKIEVIICVYAGDIERNKIRG 83
Query: 232 KMGIVKDDDAIAM 244
GI D D +
Sbjct: 84 DFGITYDMDVFRL 96
>sp|O59221|ECR1_PYRHO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH1551 PE=3 SV=1
Length = 265
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 33/192 (17%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKK--DAE 225
Y P+ GD VIG +V + V++GA L + ++ D+++D L DL+K D
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWVVDIGAPYLANL---KIQDFTDEKIDLLRTDLRKFFDIG 116
Query: 226 EFMVRGKMGIVKDDDAIAMS-------GGSGPGRPVVETGTVLFAEVLGRTLSG----RP 274
+ ++ GK+ + + + I ++ GG G +V+ V+GR S +
Sbjct: 117 D-IIYGKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKK 175
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFT-----EWNTGGLLTRIEGLRAFLPKAELL 329
L TR + + W V + E + ++ E +T GL RI+ L LL
Sbjct: 176 LTMTRIIVGQNGWIWVNGKNEALEKLAIEAILKIDRESHTKGLTDRIKSL--------LL 227
Query: 330 SRVNNFTELKEK 341
SR+ ELKEK
Sbjct: 228 SRLQ---ELKEK 236
>sp|Q898P3|Y401_CLOTE UPF0371 protein CTC_00401 OS=Clostridium tetani (strain
Massachusetts / E88) GN=CTC_00401 PE=3 SV=2
Length = 502
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 184 NENKLDVNVGADLLGTMLTKEVLPLYDK------------EMDFLLCDLKKDAEEFMVRG 231
N +KL + G LL + K VLP +D+ +++ ++C D E +RG
Sbjct: 24 NYDKLYLEFGGKLLYDLHAKRVLPGFDENAKIKLLHKLKEKVEIIICVYAGDIERNKIRG 83
Query: 232 KMGIVKDDDAIAM 244
GI D D + +
Sbjct: 84 DFGITYDVDVLRL 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,031,674
Number of Sequences: 539616
Number of extensions: 5975620
Number of successful extensions: 13272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 13212
Number of HSP's gapped (non-prelim): 120
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)