Query 019315
Match_columns 343
No_of_seqs 180 out of 1126
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:11:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 99.8 9.3E-19 3.2E-23 166.8 8.3 159 171-331 5-189 (285)
2 1kl9_A Eukaryotic translation 99.4 1.1E-15 3.6E-20 137.4 -5.2 120 170-330 13-137 (182)
3 2a19_A EIF-2- alpha, eukaryoti 99.2 2.3E-12 7.7E-17 115.0 1.7 103 171-312 14-120 (175)
4 3go5_A Multidomain protein wit 99.1 2.7E-11 9.2E-16 115.4 3.2 122 168-290 65-225 (285)
5 1q8k_A Eukaryotic translation 99.0 3.6E-11 1.2E-15 115.9 0.7 107 169-314 10-120 (308)
6 2khi_A 30S ribosomal protein S 98.9 3.5E-10 1.2E-14 93.6 2.3 87 167-291 25-112 (115)
7 3aev_A Translation initiation 98.9 2.8E-10 9.5E-15 108.0 1.8 105 169-312 8-116 (275)
8 2k52_A Uncharacterized protein 98.9 4E-09 1.4E-13 81.8 7.6 72 169-282 2-74 (80)
9 2k4k_A GSP13, general stress p 98.8 2.8E-08 9.5E-13 84.1 10.7 82 168-288 3-85 (130)
10 2eqs_A ATP-dependent RNA helic 98.8 9.1E-09 3.1E-13 83.7 5.8 84 167-289 7-93 (103)
11 2khj_A 30S ribosomal protein S 98.7 9.4E-09 3.2E-13 84.0 5.9 78 167-282 26-104 (109)
12 1luz_A Protein K3, protein K2; 98.7 9.2E-09 3.1E-13 81.9 4.7 80 163-282 2-85 (88)
13 3cw2_C Translation initiation 98.7 1.5E-09 5.3E-14 102.3 0.2 98 168-304 7-107 (266)
14 2cqo_A Nucleolar protein of 40 98.7 3E-09 1E-13 89.0 2.0 85 168-291 18-106 (119)
15 1hh2_P NUSA, N utilization sub 98.6 7.8E-08 2.7E-12 94.0 9.7 78 170-292 132-212 (344)
16 2z0s_A Probable exosome comple 98.6 5E-08 1.7E-12 90.2 7.4 93 168-316 62-154 (235)
17 2ba0_A Archeal exosome RNA bin 98.4 8E-07 2.7E-11 82.0 9.2 76 168-280 53-128 (229)
18 2nn6_I 3'-5' exoribonuclease C 98.3 6.4E-07 2.2E-11 81.7 7.0 108 167-328 76-193 (209)
19 2je6_I RRP4, exosome complex R 98.3 7.1E-07 2.4E-11 83.6 7.5 79 167-280 69-147 (251)
20 4aid_A Polyribonucleotide nucl 98.3 6.8E-08 2.3E-12 102.3 -0.2 91 164-293 629-719 (726)
21 3m7n_A Putative uncharacterize 98.3 1.2E-06 4.1E-11 77.9 7.9 98 168-327 54-163 (179)
22 2khj_A 30S ribosomal protein S 98.2 4E-07 1.4E-11 74.3 2.8 61 275-336 11-73 (109)
23 1e3p_A Guanosine pentaphosphat 98.2 8.9E-08 3E-12 101.9 -1.6 90 168-296 663-756 (757)
24 1wi5_A RRP5 protein homolog; S 98.2 2.5E-06 8.6E-11 70.5 7.4 79 167-282 16-96 (119)
25 1go3_E DNA-directed RNA polyme 98.2 3.3E-06 1.1E-10 74.6 8.5 95 167-289 76-177 (187)
26 2asb_A Transcription elongatio 98.2 3.6E-06 1.2E-10 79.2 8.5 78 168-289 3-90 (251)
27 3cdi_A Polynucleotide phosphor 98.1 3.3E-07 1.1E-11 97.1 0.0 87 167-292 622-708 (723)
28 3psi_A Transcription elongatio 98.0 9.9E-06 3.4E-10 90.1 9.2 85 165-286 895-980 (1219)
29 2khi_A 30S ribosomal protein S 97.9 2.4E-06 8.2E-11 70.5 2.0 54 276-330 11-65 (115)
30 3bzc_A TEX; helix-turn-helix, 97.9 7.3E-06 2.5E-10 87.6 4.5 76 167-280 649-725 (785)
31 1k0r_A NUSA; two component arr 97.8 2.2E-05 7.5E-10 77.4 7.1 39 169-207 127-172 (366)
32 4ayb_E DNA-directed RNA polyme 97.8 8.9E-05 3.1E-09 65.1 9.8 88 165-280 74-166 (180)
33 3psf_A Transcription elongatio 97.8 4.1E-06 1.4E-10 91.8 0.9 87 165-288 898-985 (1030)
34 2ja9_A Exosome complex exonucl 97.5 0.0004 1.4E-08 61.8 10.0 39 168-206 3-42 (175)
35 2bh8_A 1B11; transcription, mo 97.3 0.00016 5.4E-09 58.6 4.1 41 168-208 57-97 (101)
36 1y14_B B16, RPB7, DNA-directed 97.2 0.00054 1.8E-08 59.9 6.6 41 165-206 76-116 (171)
37 2k52_A Uncharacterized protein 97.1 0.00062 2.1E-08 52.3 5.4 37 294-330 3-40 (80)
38 2bh8_A 1B11; transcription, mo 97.1 0.0004 1.4E-08 56.3 4.4 37 295-331 60-97 (101)
39 2k4k_A GSP13, general stress p 97.1 0.00086 2.9E-08 56.4 6.4 45 293-337 4-50 (130)
40 2nn6_H Exosome complex exonucl 97.1 0.00041 1.4E-08 66.8 4.9 85 168-280 91-175 (308)
41 1hh2_P NUSA, N utilization sub 97.1 0.00059 2E-08 66.7 5.9 73 256-329 88-167 (344)
42 2cqo_A Nucleolar protein of 40 97.1 8.4E-05 2.9E-09 61.9 -0.1 53 285-337 11-66 (119)
43 2b8k_G B16, DNA-directed RNA p 97.0 0.00068 2.3E-08 62.1 5.2 43 163-206 74-116 (215)
44 2eqs_A ATP-dependent RNA helic 97.0 0.00094 3.2E-08 53.9 5.4 45 293-337 9-59 (103)
45 2a19_A EIF-2- alpha, eukaryoti 96.9 0.00086 2.9E-08 59.5 5.4 43 296-338 15-61 (175)
46 1luz_A Protein K3, protein K2; 96.9 0.00038 1.3E-08 55.1 2.7 36 295-331 10-49 (88)
47 1kl9_A Eukaryotic translation 96.9 0.00091 3.1E-08 59.8 5.2 44 295-338 14-61 (182)
48 2c35_B Human RPB7, DNA-directe 96.8 0.0016 5.3E-08 56.8 5.4 43 163-206 72-114 (172)
49 2bx2_L Ribonuclease E, RNAse E 96.7 0.0053 1.8E-07 63.0 9.9 40 168-207 41-82 (517)
50 2nn6_G Exosome complex exonucl 96.6 0.0071 2.4E-07 57.8 9.1 39 168-206 123-161 (289)
51 1e3p_A Guanosine pentaphosphat 96.3 0.00029 9.9E-09 75.1 -2.4 112 172-311 609-733 (757)
52 3h0g_G DNA-directed RNA polyme 96.1 0.0019 6.5E-08 56.7 1.7 43 163-206 75-117 (172)
53 3cdi_A Polynucleotide phosphor 95.9 0.0012 4.2E-08 70.0 0.0 71 267-337 594-670 (723)
54 4aid_A Polyribonucleotide nucl 95.9 0.0012 4E-08 70.2 -0.5 70 268-337 605-680 (726)
55 1q8k_A Eukaryotic translation 95.7 0.009 3.1E-07 57.5 5.0 44 295-338 12-59 (308)
56 2c35_B Human RPB7, DNA-directe 95.7 0.014 4.8E-07 50.7 5.6 35 296-330 81-115 (172)
57 1y14_B B16, RPB7, DNA-directed 95.6 0.015 5.2E-07 50.6 5.6 36 295-330 82-117 (171)
58 1go3_E DNA-directed RNA polyme 95.6 0.013 4.4E-07 51.5 5.0 36 295-330 80-115 (187)
59 2id0_A Exoribonuclease 2; RNAs 95.4 0.036 1.2E-06 57.8 8.5 85 168-278 554-642 (644)
60 3m7n_A Putative uncharacterize 95.2 0.026 9E-07 49.8 5.9 42 297-338 58-111 (179)
61 3ayh_B DNA-directed RNA polyme 94.9 0.027 9.3E-07 50.6 5.1 42 166-208 75-116 (203)
62 4ayb_E DNA-directed RNA polyme 94.7 0.033 1.1E-06 48.7 5.0 36 295-330 80-115 (180)
63 2b8k_G B16, DNA-directed RNA p 94.4 0.03 1E-06 51.2 4.2 36 295-330 82-117 (215)
64 3h0g_G DNA-directed RNA polyme 94.2 0.01 3.4E-07 52.0 0.6 35 296-330 84-118 (172)
65 2ckz_B C25, DNA-directed RNA p 94.0 0.061 2.1E-06 49.1 5.4 44 165-208 74-117 (218)
66 1wi5_A RRP5 protein homolog; S 93.4 0.045 1.5E-06 44.8 3.0 36 293-328 18-55 (119)
67 2vnu_D Exosome complex exonucl 93.3 0.23 7.8E-06 52.8 9.1 85 174-279 671-760 (760)
68 2nn6_I 3'-5' exoribonuclease C 92.9 0.056 1.9E-06 49.0 3.2 45 294-338 79-135 (209)
69 3bzc_A TEX; helix-turn-helix, 92.9 0.064 2.2E-06 57.5 4.1 45 294-338 652-698 (785)
70 2wp8_J Exosome complex exonucl 92.7 0.08 2.7E-06 58.0 4.6 34 173-206 887-921 (977)
71 3psi_A Transcription elongatio 92.5 0.1 3.5E-06 58.4 5.3 46 293-338 899-947 (1219)
72 2ba0_A Archeal exosome RNA bin 91.2 0.23 7.7E-06 45.5 5.2 36 295-330 56-92 (229)
73 2je6_I RRP4, exosome complex R 90.6 0.14 4.6E-06 47.7 3.0 37 295-331 73-110 (251)
74 1k0r_A NUSA; two component arr 90.1 0.16 5.3E-06 50.1 3.1 41 290-330 122-172 (366)
75 2z0s_A Probable exosome comple 89.9 0.15 5.2E-06 46.7 2.8 36 295-330 65-101 (235)
76 3psf_A Transcription elongatio 89.4 0.068 2.3E-06 58.9 0.0 46 292-337 901-949 (1030)
77 2id0_A Exoribonuclease 2; RNAs 89.3 0.71 2.4E-05 48.1 7.5 35 295-329 557-595 (644)
78 3ayh_B DNA-directed RNA polyme 85.7 0.55 1.9E-05 42.1 3.6 35 295-329 80-114 (203)
79 3cw2_C Translation initiation 84.5 0.26 9E-06 46.1 1.0 59 226-309 12-73 (266)
80 2ckz_B C25, DNA-directed RNA p 82.7 0.95 3.2E-05 41.2 3.9 34 296-329 81-115 (218)
81 2bx2_L Ribonuclease E, RNAse E 82.5 0.94 3.2E-05 46.4 4.1 35 295-329 44-81 (517)
82 3aev_A Translation initiation 80.5 0.32 1.1E-05 45.8 -0.1 62 226-312 12-77 (275)
83 2wp8_J Exosome complex exonucl 80.4 2.2 7.5E-05 46.8 6.4 35 295-329 885-921 (977)
84 2vnu_D Exosome complex exonucl 78.7 2.6 8.7E-05 44.8 6.1 37 293-329 666-704 (760)
85 2nn6_H Exosome complex exonucl 60.6 5.5 0.00019 38.1 3.4 35 295-329 94-129 (308)
86 2rf4_A DNA-directed RNA polyme 39.1 28 0.00094 31.2 4.2 40 167-206 124-163 (214)
87 2rf4_A DNA-directed RNA polyme 38.4 22 0.00077 31.8 3.5 34 296-329 129-163 (214)
88 2yty_A Cold shock domain-conta 36.9 51 0.0017 25.6 4.9 35 296-330 15-51 (88)
89 3d0f_A Penicillin-binding 1 tr 36.1 75 0.0026 24.8 5.9 39 170-208 31-69 (106)
90 2djq_A SH3 domain containing r 32.4 48 0.0016 23.4 3.9 35 294-330 26-61 (68)
91 2ph7_A Uncharacterized protein 32.3 6.7 0.00023 36.4 -1.0 48 19-71 65-120 (246)
92 2lj0_A Sorbin and SH3 domain-c 28.8 86 0.0029 22.6 4.7 36 168-205 23-60 (65)
93 2kgt_A Tyrosine-protein kinase 28.2 77 0.0026 22.5 4.4 34 294-329 29-68 (72)
94 2bzy_A CRK-like protein, CRKL 27.2 72 0.0025 22.5 4.0 35 294-330 22-57 (67)
95 1uhf_A Intersectin 2; beta bar 26.9 34 0.0012 24.5 2.2 35 294-330 27-61 (69)
96 2j6f_A CD2-associated protein; 26.7 60 0.0021 22.5 3.5 37 294-330 20-56 (62)
97 3u23_A CD2-associated protein; 26.6 1.1E+02 0.0039 20.8 5.0 34 294-329 26-60 (65)
98 2csq_A RIM-BP2, RIM binding pr 26.1 1.1E+02 0.0037 23.3 5.2 37 294-330 44-80 (97)
99 2vkn_A Protein SSU81; membrane 25.3 71 0.0024 22.6 3.8 37 168-206 24-60 (70)
100 1wfq_A UNR protein; beta-barre 24.6 1E+02 0.0035 23.9 4.8 33 298-330 17-51 (89)
101 3eg3_A Proto-oncogene tyrosine 24.3 62 0.0021 22.2 3.2 35 295-329 25-59 (63)
102 4esr_A Jouberin; AHI-1, AHI1, 24.1 1.3E+02 0.0045 21.0 5.0 37 168-206 23-60 (69)
103 2yuo_A CIP85, RUN and TBC1 dom 23.6 70 0.0024 23.2 3.5 35 295-330 27-61 (78)
104 2cs7_A Pneumococcal histidine 22.9 63 0.0021 23.6 2.9 28 303-330 16-43 (55)
105 1w70_A Neutrophil cytosol fact 22.2 1.1E+02 0.0036 21.0 4.0 34 295-329 24-57 (60)
106 3oss_C Type 2 secretion system 22.2 47 0.0016 25.0 2.2 33 168-200 31-66 (68)
107 3ngp_A Spectrin alpha chain, b 22.1 83 0.0028 21.4 3.5 33 295-329 26-59 (62)
108 2a28_A BZZ1 protein; SH3 domai 22.0 79 0.0027 21.1 3.3 34 295-328 20-53 (54)
109 2lx7_A GAS-7, growth arrest-sp 21.9 47 0.0016 23.8 2.2 35 168-204 21-56 (60)
110 2g6f_X RHO guanine nucleotide 21.8 1E+02 0.0035 20.9 3.9 33 294-328 23-56 (59)
111 1x69_A Cortactin isoform A; SH 21.3 1.2E+02 0.004 22.1 4.3 34 295-330 37-71 (79)
112 2gnc_A SLIT-ROBO RHO GTPase-ac 20.6 1.8E+02 0.0061 19.8 5.0 33 295-328 26-58 (60)
113 1w1f_A Tyrosine-protein kinase 20.5 1.3E+02 0.0043 20.8 4.2 34 294-329 26-61 (65)
114 1yn8_A NBP2, NAP1-binding prot 20.3 2E+02 0.0069 19.2 5.6 37 168-205 18-55 (59)
115 1sem_A SEM-5; SRC-homology 3 ( 20.0 89 0.003 21.1 3.2 33 295-329 22-55 (58)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.75 E-value=9.3e-19 Score=166.78 Aligned_cols=159 Identities=12% Similarity=0.070 Sum_probs=129.0
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhh-hhhhh----------hhHhhhcceeeeec-C
Q 019315 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLC-DLKKD----------AEEFMVRGKMGIVK-D 238 (343)
Q Consensus 171 k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~-d~~k~----------~ee~~VeGkV~~i~-~ 238 (343)
..|++++|+|++++++|+|||+| +.+|+||.+|+...-++++++.+. |.... ..+..+.|+|+.++ +
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~~vGdevev~v~~d~~~r~iat~~~p~~~~G~~~~g~V~~v~~~ 83 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQHTVGDTVKGFAYTDMKQKLRLTTLEVTATQDQFGWGRVTEVRKD 83 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCCCTTSEEEEEEEECTTSCEEEECSCCCSCSSSCEEEEEEEEETT
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCccccCCEEEEEEEECCCCCEEEecccccccCCCEEEEEEEEEccC
Confidence 47999999999999999999997 899999999995322344443222 22111 23578899999999 7
Q ss_pred Ccc-eeccC-CCCCCCCceec----------cceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEE
Q 019315 239 DDA-IAMSG-GSGPGRPVVET----------GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTE 306 (343)
Q Consensus 239 dga-V~Ig~-~ieg~i~v~ei----------Gd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve 306 (343)
+|+ |.+|. ++++|+|++++ |+++.+. +..|.++||.||+|++...++|......|+.|+.|+|+|++
T Consensus 84 ~GaFVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~-l~iD~~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~ 162 (285)
T 3go5_A 84 LGVFVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIR-LEVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYR 162 (285)
T ss_dssp TEEEEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEE-EEECTTSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEEHHHCCcccccccCCCCEEEEE-EEECCCCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEE
Confidence 999 99987 68999998866 6777543 56666789999998776678998877789999999999999
Q ss_pred EecCeeEE-EE-CCeEEEEeCCccccC
Q 019315 307 WNTGGLLT-RI-EGLRAFLPKAELLSR 331 (343)
Q Consensus 307 ~nKGGliV-eI-eGlrgFIP~SQl~~r 331 (343)
+...|++| .+ +|+.||||.|++...
T Consensus 163 i~~~G~fV~~i~~g~~Glih~SEl~~~ 189 (285)
T 3go5_A 163 LKLSGTFVYLPENNMLGFIHPSERYAE 189 (285)
T ss_dssp EETTEEEEEETTTTEEEEECGGGCSSC
T ss_pred EeCCcEEEEEeCCCeEEEEEHHHcccc
Confidence 99999999 99 589999999999753
No 2
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.45 E-value=1.1e-15 Score=137.40 Aligned_cols=120 Identities=16% Similarity=0.085 Sum_probs=98.4
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEe--CCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCC
Q 019315 170 PKPGDFVIGVVVSGNENKLDVNV--GADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (343)
Q Consensus 170 ~k~GdiVeG~VVsI~~~gv~VDI--G~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ 247 (343)
+++|++++|+|++|+++|+||+| ..+.+|+||++|+++.+ +.. +
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~-----------------------v~~--------~--- 58 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRR-----------------------IRS--------I--- 58 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------------------------------------
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcc-----------------------cCC--------H---
Confidence 48999999999999999999999 56899999999998431 100 1
Q ss_pred CCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEec-CeeEEEE-CCeEEEEe
Q 019315 248 SGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT-GGLLTRI-EGLRAFLP 324 (343)
Q Consensus 248 ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nK-GGliVeI-eGlrgFIP 324 (343)
..++.+|+.+.+.|+..+ ++++|.||+|++. ..+|..+.+.|+.|..++|+|+.+.+ .| |++ +|+.|++|
T Consensus 59 ----~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~-~~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h 131 (182)
T 1kl9_A 59 ----NKLIRIGRNECVVVIRVDKEKGYIDLSKRRVS-PEEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQ 131 (182)
T ss_dssp --------CTTCEEEEEEEEEETTTTEEEEESTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHH
T ss_pred ----HHhcCCCCEEEEEEEEEECCCCEEEEEEeecC-cChHHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEE
Confidence 234578899999999876 5799999999988 58999999999999999999999997 99 677 58999999
Q ss_pred CCcccc
Q 019315 325 KAELLS 330 (343)
Q Consensus 325 ~SQl~~ 330 (343)
.|.+++
T Consensus 132 ~s~~~~ 137 (182)
T 1kl9_A 132 RTAWVF 137 (182)
T ss_dssp HTHHHH
T ss_pred eeecch
Confidence 998753
No 3
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.21 E-value=2.3e-12 Score=114.95 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=82.7
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCCC
Q 019315 171 KPGDFVIGVVVSGNENKLDVNVG--ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGS 248 (343)
Q Consensus 171 k~GdiVeG~VVsI~~~gv~VDIG--~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~i 248 (343)
++|++++|+|++|.++|+||+|. .+.+|+||++|+++.+ +.. +
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~-----------------------v~~--------~---- 58 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRR-----------------------IRS--------I---- 58 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC-------------------------------C--------C----
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcc-----------------------cCC--------H----
Confidence 48999999999999999999993 6799999999998431 000 1
Q ss_pred CCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEe-cCee
Q 019315 249 GPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN-TGGL 312 (343)
Q Consensus 249 eg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~n-KGGl 312 (343)
..++.+|+.+.+.|+..+ +.++|.||+|++. ..+|..+.+.|+.|..++|+|+.+. +.|+
T Consensus 59 ---~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~-~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 59 ---QKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVS-SEDIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ---CCCCCTTSEEEEEEEEEETTTTEEEEESTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHcCCCCCEEEEEEEEEECCCCeEEEEEEecC-cChHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 234578899999999876 5789999999988 4999999999999999999998888 6776
No 4
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.09 E-value=2.7e-11 Score=115.40 Aligned_cols=122 Identities=14% Similarity=-0.074 Sum_probs=93.3
Q ss_pred CCCCCCCEEEEEEEEEe-CCeEEEEeCC-CeeEEEeccccCccc------ccchh-hhhh----------------hhhh
Q 019315 168 YEPKPGDFVIGVVVSGN-ENKLDVNVGA-DLLGTMLTKEVLPLY------DKEMD-FLLC----------------DLKK 222 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~-~~gv~VDIG~-KsEG~IPisEls~~~------~ke~e-~l~~----------------d~~k 222 (343)
..++.|+++.|+|++++ +.|||||+|. ..+|+||++|+++.. ++++. .+.+ +.|.
T Consensus 65 p~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l~iD~~~Ri~ls~k~~~~~~~~~ 144 (285)
T 3go5_A 65 VTATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRLEVDKKDRIWGLLAYQEDFQRLA 144 (285)
T ss_dssp CCSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEEEECTTSCEEEEECCHHHHHHHC
T ss_pred ccccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccccccCCCCEEEEEEEECCCCcEEEEehhhhhcchhh
Confidence 35678999999999999 7999999998 589999999997532 22221 0111 1221
Q ss_pred h-----hhHhhhcceeeeecCCcc-e-eccCCCCCCCCceecc------ceEEEEEEeecC-CCceEEeHHHHHHHHHHH
Q 019315 223 D-----AEEFMVRGKMGIVKDDDA-I-AMSGGSGPGRPVVETG------TVLFAEVLGRTL-SGRPLLSTRRLFRKMAWH 288 (343)
Q Consensus 223 ~-----~ee~~VeGkV~~i~~dga-V-~Ig~~ieg~i~v~eiG------d~v~~eVl~~de-~G~I~LS~Krl~~~~aWe 288 (343)
. ..+..|+|+|..++++|+ | .+.++++||+|++++. +++.+.|+..++ +|+|.||+|++.. .+|+
T Consensus 145 ~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~-~~~~ 223 (285)
T 3go5_A 145 RPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFREVDRTLNLSLKPRSF-EMLE 223 (285)
T ss_dssp CCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSSCCCTTCEEEEEEEEEETTTTEEEEECSCCCC-CCCC
T ss_pred hhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccccCCCCCEEEEEEEEEECCCCeEEEEeChhhh-hccc
Confidence 1 235789999999999999 9 9999999999987655 889999998765 8999999998653 3444
Q ss_pred HH
Q 019315 289 RV 290 (343)
Q Consensus 289 ~l 290 (343)
..
T Consensus 224 ~~ 225 (285)
T 3go5_A 224 ND 225 (285)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 5
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.02 E-value=3.6e-11 Score=115.86 Aligned_cols=107 Identities=15% Similarity=0.013 Sum_probs=89.6
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 169 EPKPGDFVIGVVVSGNENKLDVNVG--ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 169 ~~k~GdiVeG~VVsI~~~gv~VDIG--~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
.+++|++++|+|++|.++|+||+|+ .+.+|+||++|+++.+. .
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i-----------------------~------------ 54 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRI-----------------------R------------ 54 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSC-----------------------S------------
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccc-----------------------c------------
Confidence 3568999999999999999999997 68999999999985310 0
Q ss_pred CCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEecC-eeEE
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG-GLLT 314 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nKG-GliV 314 (343)
-...++.+|+.+.+.|+..+ +.++|.||+|++. ..+|..+.+.|+.|..++|+|+++... |+++
T Consensus 55 ---~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~-~~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 55 ---SINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVS-PEEAIKCEDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp ---CCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred ---CHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecc-cChHHHHHHHccCCCeeEEEEEEcccccCCcc
Confidence 01234578899999999876 5799999999988 599999999999999999999999884 8754
No 6
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.90 E-value=3.5e-10 Score=93.59 Aligned_cols=87 Identities=18% Similarity=0.106 Sum_probs=68.6
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
...+++|++++|+|+++.++|+||+|+.+.+|+||++|+++.. ++ .. .
T Consensus 25 ~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~----------------------~~---~~-----~-- 72 (115)
T 2khi_A 25 AKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN----------------------KN---IH-----P-- 72 (115)
T ss_dssp SCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSS----------------------TT---CS-----S--
T ss_pred hhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccc----------------------cc---cC-----c--
Confidence 3578899999999999999999999998899999999997310 00 00 0
Q ss_pred CCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHHHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVR 291 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe~l~ 291 (343)
.....+|+.+.+.|+..+ ++++|.||+|++.. +||+++.
T Consensus 73 -----~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~~~-~p~~~~~ 112 (115)
T 2khi_A 73 -----SKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA-NPWQQFA 112 (115)
T ss_dssp -----TTTCCTTCEEEEEEEEEETTTTEEEECCCCCCS-SCCCCCC
T ss_pred -----ccEECCCCEEEEEEEEEECCCCEEEEEEEecCc-CHHHHHH
Confidence 123577889999999876 47899999998874 7897654
No 7
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.90 E-value=2.8e-10 Score=108.04 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 169 EPKPGDFVIGVVVSGNENKLDVNVG--ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 169 ~~k~GdiVeG~VVsI~~~gv~VDIG--~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
.+++|++|+|+|++|.++|+||+++ .+.+|+||++|+++.+ +. + +
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~-----------------------v~---~-----~-- 54 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTW-----------------------VR---N-----I-- 54 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSC-----------------------CS---C-----G--
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCccc-----------------------cc---C-----H--
Confidence 3568999999999999999999997 4799999999998431 00 0 1
Q ss_pred CCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEe-cCee
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN-TGGL 312 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~n-KGGl 312 (343)
.....+|+.+.+.|+..+ ++++|.||+|++. ..+|....+.|+.|+.++|.|..+. +.|+
T Consensus 55 -----~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~-~~~~~~~~~~~~~g~~v~g~v~~v~~~~G~ 116 (275)
T 3aev_A 55 -----RDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVT-QQQRKAKLQEFKRAQKAENLLRLAAEKLGK 116 (275)
T ss_dssp -----GGTCCTTCEEEEEEEEEETTTTEEEEESTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -----HhccCCCCEEEEEEEEEECCCCEEEEEEeecC-cchhHHHHHhccCCCeEEEEEEEchhhcCC
Confidence 123577889999999876 5799999999987 4899999999999999998888777 6665
No 8
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.88 E-value=4e-09 Score=81.76 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCCC
Q 019315 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGS 248 (343)
Q Consensus 169 ~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~i 248 (343)
.+++|++++|+|+++.++|+||+|+.+.+|++|++|+++.+ +
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~----------------------------------~---- 43 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLR----------------------------------L---- 43 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCC----------------------------------G----
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCccc----------------------------------c----
Confidence 47899999999999999999999998999999999997421 0
Q ss_pred CCCCCceeccceEEEEEEeecC-CCceEEeHHHHH
Q 019315 249 GPGRPVVETGTVLFAEVLGRTL-SGRPLLSTRRLF 282 (343)
Q Consensus 249 eg~i~v~eiGd~v~~eVl~~de-~G~I~LS~Krl~ 282 (343)
....+|+.+.+.|+..+. .|+|.||++++.
T Consensus 44 ----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 44 ----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp ----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC
T ss_pred ----eeeCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 124677888899998765 499999987755
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.80 E-value=2.8e-08 Score=84.12 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=65.7
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ 247 (343)
..+++|++++|+|++|.++|+||+|+.+.+|+||++|+++.+ +. + +
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~-----------------------~~---~-----~--- 48 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGF-----------------------VK---D-----I--- 48 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSC-----------------------CS---C-----G---
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCccc-----------------------cc---C-----c---
Confidence 458899999999999999999999988899999999997431 00 0 1
Q ss_pred CCCCCCceeccceEEEEEEeecC-CCceEEeHHHHHHHHHHH
Q 019315 248 SGPGRPVVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWH 288 (343)
Q Consensus 248 ieg~i~v~eiGd~v~~eVl~~de-~G~I~LS~Krl~~~~aWe 288 (343)
.....+|+.+.+.|+..+. +++|.||+|++.. .+|.
T Consensus 49 ----~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~-~p~~ 85 (130)
T 2k4k_A 49 ----NEHLSVGDEVQVKVLAVDEEKGKISLSIRATQA-APEK 85 (130)
T ss_dssp ----GGTCCTTCEEEEEEEEEETTTTEEEEESHHHHH-SCCC
T ss_pred ----cccCCCCCEEEEEEEEEeCCCCEEEEEEeeccc-Cccc
Confidence 1235778899999998764 8999999999874 5654
No 10
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=9.1e-09 Score=83.65 Aligned_cols=84 Identities=21% Similarity=0.122 Sum_probs=64.4
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCC---CeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCccee
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGA---DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIA 243 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~---KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~ 243 (343)
...++.|++++|+|++|.++|+||+|+. +.+|+||++|+.+.. ++. .
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~----------------------~~~---~----- 56 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG----------------------RVA---N----- 56 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS----------------------CCC---C-----
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc----------------------ccC---C-----
Confidence 4568899999999999999999999985 899999999994210 000 0
Q ss_pred ccCCCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHH
Q 019315 244 MSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289 (343)
Q Consensus 244 Ig~~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~ 289 (343)
+ ..+..+|+.+.++|+..+. ++|.||+|++.. .+|+.
T Consensus 57 ~-------~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~~~~-~~~~~ 93 (103)
T 2eqs_A 57 V-------ADVVSKGQRVKVKVLSFTG-TKTSLSMKDVDQ-ETGED 93 (103)
T ss_dssp H-------HHHCCTTCEEEEEEEEEET-TEEEEESTTBCT-TTCCB
T ss_pred c-------ccEeCCCCEEEEEEEEEEC-CeeEEEEeeccc-CCchh
Confidence 0 1234678889999988765 699999998874 67754
No 11
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.75 E-value=9.4e-09 Score=84.02 Aligned_cols=78 Identities=21% Similarity=0.126 Sum_probs=61.7
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
...+++|++|+|+|++|.++|+||+|+.+.+|+||++|+++.+.. . +
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~--------------------------~-----~-- 72 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVE--------------------------D-----A-- 72 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSS--------------------------S-----G--
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCccccc--------------------------C-----h--
Confidence 357889999999999999999999999899999999999743100 0 0
Q ss_pred CCCCCCCceeccceEEEEEEeecCC-CceEEeHHHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRTLS-GRPLLSTRRLF 282 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~de~-G~I~LS~Krl~ 282 (343)
.....+|+.+.+.|+..+.+ ++|.||+|++.
T Consensus 73 -----~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 73 -----TLVLSVGDEVEAKFTGVDRKNRAISLSVRAKD 104 (109)
T ss_dssp -----GGSCCTTCEEEEEEEEEETTTTEEEEETTSSS
T ss_pred -----hhccCCCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 12346788899999987644 68999998754
No 12
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.72 E-value=9.2e-09 Score=81.89 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=59.5
Q ss_pred hhcccCCCCCCCEEEEEEEEEeCCeEEEEeCC--CeeEEEecc-ccCcccccchhhhhhhhhhhhhHhhhcceeeeecCC
Q 019315 163 VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGA--DLLGTMLTK-EVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDD 239 (343)
Q Consensus 163 Le~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~--KsEG~IPis-Els~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~d 239 (343)
|.-.+..+++|++++|+|+ |+++|+||+++. +.+|++|++ |+++.+ +. +.
T Consensus 2 ~~~~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~---~~----~~------------------- 54 (88)
T 1luz_A 2 LAFCYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDR---YV----EY------------------- 54 (88)
T ss_dssp --CCSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHH---HH----HH-------------------
T ss_pred ceEEecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCccc---cc----CH-------------------
Confidence 4445667899999999999 999999999963 799999999 997421 00 00
Q ss_pred cceeccCCCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHH
Q 019315 240 DAIAMSGGSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLF 282 (343)
Q Consensus 240 gaV~Ig~~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~ 282 (343)
.... +|+.+.++|+..+ ++++|.||+|++.
T Consensus 55 ------------~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~ 85 (88)
T 1luz_A 55 ------------RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_dssp ------------HHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred ------------hHEe-CCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 0123 6778888898876 5789999987653
No 13
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.72 E-value=1.5e-09 Score=102.30 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceecc
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVG--ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMS 245 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG--~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig 245 (343)
+.+++|++++|+|++|.++|+||+++ .+.+|+||++|+++.+.. . +
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~-----------------------~--------~- 54 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVK-----------------------N--------I- 54 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCC-----------------------C--------H-
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCccccc-----------------------C--------H-
Confidence 45789999999999999999999997 689999999999743100 0 0
Q ss_pred CCCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 019315 246 GGSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKF 304 (343)
Q Consensus 246 ~~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkV 304 (343)
...+.+|+.+.+.|+..+ ++|+|.||+|++. ..+|..+.+.|+.++.+.+.|
T Consensus 55 ------~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~-~~~~~~~~~~~~~~~~~~~iv 107 (266)
T 3cw2_C 55 ------RDVLKENRKVIVKVIRVDRRKGTVDVSLKKVT-DDERRKKNLQWKKIQRLDKIL 107 (266)
T ss_dssp ------HHHSCTTCEEEEEECCCCSSSCCCBEESTTSC-TTHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHhCcCCCEEEEEEEEEeCCCCEEEEEEEecc-hhhHHHHHHhccccCccceee
Confidence 123467888889998876 4799999999988 589999999888776554443
No 14
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3e-09 Score=88.99 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=65.3
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCC-CeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~-KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
+.+++|++++|+|++|.++|+||+|+. +.+|+||++|+++.+... +
T Consensus 18 ~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~-------------------------------~-- 64 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDK-------------------------------P-- 64 (119)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSC-------------------------------H--
T ss_pred cccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccC-------------------------------h--
Confidence 568899999999999999999999954 579999999997431000 0
Q ss_pred CCCCCCCceeccceEEEEEEeecC---CCceEEeHHHHHHHHHHHHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRTL---SGRPLLSTRRLFRKMAWHRVR 291 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~de---~G~I~LS~Krl~~~~aWe~l~ 291 (343)
..++.+|+.+.+.|+..+. .++|.||+|++. ..+|+.+.
T Consensus 65 -----~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~~-~~~~~~~~ 106 (119)
T 2cqo_A 65 -----SEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVN-QGTGKDLD 106 (119)
T ss_dssp -----HHHCCTTCEEEEEEEEEEECSSCEEEEEESTTBC-SSSCCBSC
T ss_pred -----hhcCCCCCEEEEEEEEEeccccCceEEEEEeecc-cCCccccC
Confidence 1234678888899987652 379999999987 47887653
No 15
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.64 E-value=7.8e-08 Score=94.02 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCCCC
Q 019315 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSG 249 (343)
Q Consensus 170 ~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ie 249 (343)
.+.|++|+|+|.+++++++|||+| |+||+||++|+.+.
T Consensus 132 ~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~ip~----------------------------------------- 169 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWIPG----------------------------------------- 169 (344)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSCTT-----------------------------------------
T ss_pred hcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcCCC-----------------------------------------
Confidence 348999999999999999999998 99999999999732
Q ss_pred CCCCceeccceEEEEEEeec---CCCceEEeHHHHHHHHHHHHHHH
Q 019315 250 PGRPVVETGTVLFAEVLGRT---LSGRPLLSTRRLFRKMAWHRVRQ 292 (343)
Q Consensus 250 g~i~v~eiGd~v~~eVl~~d---e~G~I~LS~Krl~~~~aWe~l~q 292 (343)
....+|+.+.+.|+..+ ..+++.||+++......|-+++-
T Consensus 170 ---E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~LfelEV 212 (344)
T 1hh2_P 170 ---EEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLEI 212 (344)
T ss_dssp ---CCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHHHHHC
T ss_pred ---cCCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHHHHhhc
Confidence 11255677777777542 34689999999998888987653
No 16
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.62 E-value=5e-08 Score=90.20 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ 247 (343)
|.+++||+|.|+|+++.+++++||||++.+|+||++|+.... . ..+
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~---~-----------------------~~~-------- 107 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP---F-----------------------NPA-------- 107 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC---C-----------------------CTT--------
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCc---c-----------------------ccc--------
Confidence 578999999999999999999999999999999999996210 0 000
Q ss_pred CCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEecCeeEEEE
Q 019315 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI 316 (343)
Q Consensus 248 ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nKGGliVeI 316 (343)
..-....+++||.+.++|+..++++++.||.|. ...++.++|+++.+
T Consensus 108 ~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~----------------------~~lG~l~gG~vv~v 154 (235)
T 2z0s_A 108 VDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQG----------------------EGLGRIVRGKIVEI 154 (235)
T ss_dssp TTCCTTSSCTTCEEEEEEEEECTTSCEEEECCS----------------------SSCEECCSSEEEEC
T ss_pred hhhHhhcCCCCCEEEEEEEEECCCCcEEEEEec----------------------ccCccccCCEEEEE
Confidence 011134568899999999988777899999641 12345588999987
No 17
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.40 E-value=8e-07 Score=82.04 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=61.2
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ 247 (343)
|.+++||+|.|+|+.+.+++++|||+++.+|+||++|+..... +
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~----------------------~-------------- 96 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKP----------------------N-------------- 96 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCT----------------------T--------------
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHcccccc----------------------c--------------
Confidence 5689999999999999999999999999999999999972100 0
Q ss_pred CCCCCCceeccceEEEEEEeecCCCceEEeHHH
Q 019315 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (343)
Q Consensus 248 ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Kr 280 (343)
.-..+.+++||.+.++|+..++++++.||.|+
T Consensus 97 -~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~ 128 (229)
T 2ba0_A 97 -KKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128 (229)
T ss_dssp -SCGGGTCCTTCEEEEEEEEECTTCCEEEECCS
T ss_pred -cchhcccCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 00134467889999999988777899999753
No 18
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.34 E-value=6.4e-07 Score=81.69 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=74.8
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeC--------CCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVG--------ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKD 238 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG--------~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~ 238 (343)
.+.+++||+|.|+|++|.+++++|||+ .+.+|+||++|+++.....
T Consensus 76 ~y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~-------------------------- 129 (209)
T 2nn6_I 76 QLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDK-------------------------- 129 (209)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCC--------------------------
T ss_pred cCCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccc--------------------------
Confidence 367899999999999999999999985 4679999999997431000
Q ss_pred CcceeccCCCCCCCCceeccceEEEEEEeecCC-CceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEec-CeeEEEE
Q 019315 239 DDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLS-GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT-GGLLTRI 316 (343)
Q Consensus 239 dgaV~Ig~~ieg~i~v~eiGd~v~~eVl~~de~-G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nK-GGliVeI 316 (343)
+.+ ...+++||.+.++|+..+++ +++.||.|+.. -|+|..... |+.++.+
T Consensus 130 ---~~~-------~~~l~~GD~V~akVisi~~~~~~i~LS~k~~~------------------lGVv~A~c~~g~~m~~~ 181 (209)
T 2nn6_I 130 ---VEI-------YKSFRPGDIVLAKVISLGDAQSNYLLTTAENE------------------LGVVVAHSESGIQMVPI 181 (209)
T ss_dssp ---CCG-------GGTCCSSSEEEEEEEEEETTTTEEEEECCSSS------------------CEECCCBCSSSCBCEEE
T ss_pred ---cch-------hhhcCCCCEEEEEEEEEeCCCCeEEEEEecCC------------------CcEEEEEcCCCCEEEEc
Confidence 001 23457889999999987644 57999988765 356655554 4445555
Q ss_pred CCeEEEEeCCcc
Q 019315 317 EGLRAFLPKAEL 328 (343)
Q Consensus 317 eGlrgFIP~SQl 328 (343)
.--.--+|..-.
T Consensus 182 ~~~~m~cp~cg~ 193 (209)
T 2nn6_I 182 SWCEMQCPKTHT 193 (209)
T ss_dssp ETTEEECTTTTC
T ss_pred cCCEEECCCCCC
Confidence 322344565543
No 19
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.34 E-value=7.1e-07 Score=83.56 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=61.8
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
.|.+++||+|.|+|+++.+++++||||.+.+|+||++|+.... + ..+
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~-----------------------~---~~~------- 115 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRS-----------------------I---NVG------- 115 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC-----------------------C---CTT-------
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCc-----------------------c---ccc-------
Confidence 4678999999999999999999999999999999999996311 0 000
Q ss_pred CCCCCCCceeccceEEEEEEeecCCCceEEeHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Kr 280 (343)
.-....+++||.+.++|+..++++++.||.|.
T Consensus 116 --~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 116 --EDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp --CCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred --cchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 01134568889999999987777889999743
No 20
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.31 E-value=6.8e-08 Score=102.35 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=0.0
Q ss_pred hcccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCccee
Q 019315 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIA 243 (343)
Q Consensus 164 e~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~ 243 (343)
+.....+++|++++|+|++|.++|+||+|..+.+|+||++|+++.+ +..
T Consensus 629 ~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~r-----------------------v~~-------- 677 (726)
T 4aid_A 629 KSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER-----------------------VAK-------- 677 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCccc-----------------------ccC--------
Confidence 3334678999999999999999999999988899999999998431 000
Q ss_pred ccCCCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHH
Q 019315 244 MSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQI 293 (343)
Q Consensus 244 Ig~~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa 293 (343)
+ ..++++|+.+.++|+..+.+|+|.||+|++.. .+|+.+.+.
T Consensus 678 ~-------~d~~kvGD~V~VkVi~iD~~grI~LS~K~~~~-~~G~~~~~k 719 (726)
T 4aid_A 678 P-------SDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQ-ETGEDLSKK 719 (726)
T ss_dssp --------------------------------------------------
T ss_pred c-------cccCCCCCEEEEEEEEECCCCcEEEEEeeccc-Ccchhhhhh
Confidence 1 12357788888999987778999999999985 789888554
No 21
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.31 E-value=1.2e-06 Score=77.87 Aligned_cols=98 Identities=21% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCC----------CeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeec
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGA----------DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVK 237 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~----------KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~ 237 (343)
+.++ ||+|.|+|++|.+++++|||+. ..+|+||++|+++...
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~--------------------------- 105 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV--------------------------- 105 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCC---------------------------
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchh---------------------------
Confidence 5678 9999999999999999999987 8999999999984310
Q ss_pred CCcceeccCCCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEe-c-CeeEEE
Q 019315 238 DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN-T-GGLLTR 315 (343)
Q Consensus 238 ~dgaV~Ig~~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~n-K-GGliVe 315 (343)
+-..+.+++||.+.++|+. +++.||.|..+ -|+|.... + |..++.
T Consensus 106 -----------~~~~~~~~~GD~V~akVi~----~~i~LS~k~~~------------------lGvv~a~~~~~g~~m~~ 152 (179)
T 3m7n_A 106 -----------KEISEAVGYLDILKARVIG----DNLRLSTKEEE------------------MGVLRALCSNCKTEMVR 152 (179)
T ss_dssp -----------SSGGGTCCTTCEEEEEEEE----TTTEEECCSTT------------------CEEEECBCTTTCCBCEE
T ss_pred -----------hCHhhcCCCCCEEEEEEEC----CeEEEEEecCC------------------CCEEEecccccCCceEE
Confidence 0013456788999999986 88999987755 47777775 3 445555
Q ss_pred ECCeEEEEeCCc
Q 019315 316 IEGLRAFLPKAE 327 (343)
Q Consensus 316 IeGlrgFIP~SQ 327 (343)
+. -.--+|...
T Consensus 153 ~~-~~~~cp~~g 163 (179)
T 3m7n_A 153 EG-DILKCPECG 163 (179)
T ss_dssp CS-SSEECSSSC
T ss_pred CC-CEEECCCCC
Confidence 43 344555553
No 22
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.24 E-value=4e-07 Score=74.27 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=45.2
Q ss_pred EEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCccccC-CCChh
Q 019315 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLSR-VNNFT 336 (343)
Q Consensus 275 ~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~r-v~nle 336 (343)
.-|+|++. .+||+.+.+.++.|++++|+|+++...|++|+++ |++||||.|++... ..++.
T Consensus 11 ~~~iKq~~-~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~ 73 (109)
T 2khj_A 11 SSGLVPRG-SHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDAT 73 (109)
T ss_dssp -----------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGG
T ss_pred ccchhhcc-cCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChh
Confidence 34788888 5999999999999999999999999999999995 89999999999753 33433
No 23
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.23 E-value=8.9e-08 Score=101.86 Aligned_cols=90 Identities=14% Similarity=0.047 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEecccc----CcccccchhhhhhhhhhhhhHhhhcceeeeecCCccee
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEV----LPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIA 243 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEl----s~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~ 243 (343)
..+++|++++|+|++|.++|+||++..+.+|+||++|+ ++.+ +..
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~r-----------------------v~~-------- 711 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKR-----------------------VEN-------- 711 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC----------------------------------------------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCc-----------------------ccC--------
Confidence 56789999999999999999999998889999999999 5321 100
Q ss_pred ccCCCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhC
Q 019315 244 MSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQL 296 (343)
Q Consensus 244 Ig~~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~ 296 (343)
+ ..+..+|+++.++|+..+.+|+|.||+|++. ..+|....+.|.+
T Consensus 712 ~-------~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~-~~pw~~~~~~~~~ 756 (757)
T 1e3p_A 712 V-------EDVLGVGQKVQVEIAEIDSRGKLSLIPVIEG-EEAASDEKKDDAE 756 (757)
T ss_dssp -----------CCSSCBCCCCCCCCCSSCC-----------------------
T ss_pred c-------ccccCCCCEEEEEEEEECCCCCEEEEEecCC-CCchhhhhhcccC
Confidence 0 1234667777788887766899999999988 5899998877653
No 24
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.22 E-value=2.5e-06 Score=70.54 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=57.9
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeC-CCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceecc
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVG-ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMS 245 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG-~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig 245 (343)
...+++|++++|+|.+|.++|+||+|+ .+.+|++|.++... +...+. .
T Consensus 16 ~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~-------~~~~~~-----------------------~- 64 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQE-------YIRQKN-----------------------K- 64 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHH-------HHHHHS-----------------------S-
T ss_pred HhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccc-------cccccC-----------------------c-
Confidence 357899999999999999999999998 57888888776420 100000 0
Q ss_pred CCCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHH
Q 019315 246 GGSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLF 282 (343)
Q Consensus 246 ~~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~ 282 (343)
.....+|+.+.++|+..+ +.++|.||+|+..
T Consensus 65 ------~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 65 ------GAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp ------SCCCCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred ------cCEeCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 123577888999999876 4589999987643
No 25
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.22 E-value=3.3e-06 Score=74.63 Aligned_cols=95 Identities=24% Similarity=0.374 Sum_probs=63.8
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
..++++|++++|+|++++++|+||+++. .+|++|++++.+.+ +. .|. ....+ ++.
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~---~~---~d~-----------------~~~~~-~~~ 130 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDY---VS---YDP-----------------KREAI-IGK 130 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSC---EE---ECC-----------------C--CE-EET
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCc---ce---ECC-----------------ccceE-Eec
Confidence 4678999999999999999999999986 89999999997432 11 010 00000 111
Q ss_pred CCCCCCCceeccceEEEEEEeecC------CCceEEeHHHHH-HHHHHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRTL------SGRPLLSTRRLF-RKMAWHR 289 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~de------~G~I~LS~Krl~-~~~aWe~ 289 (343)
. .....++|+.+.+.|++.+. .++|.||++... ....|-.
T Consensus 131 ~---~~~~~~~Gd~V~vkV~~vd~~~~~p~~~~I~lS~k~~~LG~~~w~~ 177 (187)
T 1go3_E 131 E---TGKVLEIGDYVRARIVAISLKAERKRGSKIALTMRQPYLGKLEWIE 177 (187)
T ss_dssp T---TCCEECTTCEEEEEEEEEECCC-----CEEEEECCSTTCEEHHHHH
T ss_pred C---CCeEEcCCCEEEEEEEEEEcccCCCCccEEEEEEcCCCCCcHHHHh
Confidence 0 12456788899999987542 358999998832 1245543
No 26
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.19 E-value=3.6e-06 Score=79.18 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=59.5
Q ss_pred CCCCCCCEEEEEEEE----EeCCeEEEEeCC---CeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCc
Q 019315 168 YEPKPGDFVIGVVVS----GNENKLDVNVGA---DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDD 240 (343)
Q Consensus 168 ~~~k~GdiVeG~VVs----I~~~gv~VDIG~---KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dg 240 (343)
|.-+.|++|+|+|.+ ++++.++||+|+ |.||+||.+|+.+.
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~-------------------------------- 50 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG-------------------------------- 50 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT--------------------------------
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC--------------------------------
Confidence 344689999999999 899999999998 79999999998742
Q ss_pred ceeccCCCCCCCCceeccceEEEEEEeec---CCCceEEeHHHHHHHHHHHH
Q 019315 241 AIAMSGGSGPGRPVVETGTVLFAEVLGRT---LSGRPLLSTRRLFRKMAWHR 289 (343)
Q Consensus 241 aV~Ig~~ieg~i~v~eiGd~v~~eVl~~d---e~G~I~LS~Krl~~~~aWe~ 289 (343)
.....|+.+.+.|+..+ ..++|.||+.+......|=+
T Consensus 51 ------------E~~~~GDrIkayV~~V~~~~~gpqIiLSRt~p~lvk~Lfe 90 (251)
T 2asb_A 51 ------------ESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFS 90 (251)
T ss_dssp ------------CCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHHHHHHHH
T ss_pred ------------ccCCCCCEEEEEEEEEEcCCCCCEEEEEeccHHHHHHHHH
Confidence 11255677777777532 34799999988776555543
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.12 E-value=3.3e-07 Score=97.14 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
...+++|++++|+|++|.++|+||+++.+.+|+||++|+++.+ +.. +
T Consensus 622 ~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~-----------------------v~~--------~-- 668 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-----------------------VEK--------V-- 668 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCcc-----------------------ccC--------c--
Confidence 4578899999999999999999999988899999999997421 100 0
Q ss_pred CCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQ 292 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~q 292 (343)
..+..+|+.+.++|+..+.+|+|.||+|.+. ..+|..+.-
T Consensus 669 -----~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~-~~~g~~~~p 708 (723)
T 3cdi_A 669 -----TDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT-EQSQPAAAP 708 (723)
T ss_dssp ----------------------------------------------
T ss_pred -----ccccCCCCEEEEEEEEECCCCcEEEEEEecc-CCCCcccCc
Confidence 1234678888889988766899999999987 478887643
No 28
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.02 E-value=9.9e-06 Score=90.07 Aligned_cols=85 Identities=12% Similarity=-0.092 Sum_probs=66.2
Q ss_pred cccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceec
Q 019315 165 VEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244 (343)
Q Consensus 165 ~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~I 244 (343)
+....+++|++|+|+|++|+++|+||+|+.+.+|+||++++++.. ...+ .
T Consensus 895 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~------~v~~------------------------p 944 (1219)
T 3psi_A 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQ------LRRP------------------------A 944 (1219)
T ss_dssp CCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTT------SCSC------------------------S
T ss_pred CcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCc------ccCC------------------------H
Confidence 456789999999999999999999999998999999999998431 0000 0
Q ss_pred cCCCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHH
Q 019315 245 SGGSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMA 286 (343)
Q Consensus 245 g~~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~a 286 (343)
..++.+|+.+.++|+..+ +.++|.||+|.-+.+.+
T Consensus 945 -------~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~ 980 (1219)
T 3psi_A 945 -------NEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQ 980 (1219)
T ss_dssp -------TTTSCTTCEEEEEEEEEEGGGTEEEEECCHHHHC--
T ss_pred -------HHcCCCCCEEEEEEEEEECCCCEEEEEecHHHhcch
Confidence 234678899999999876 67999999987654333
No 29
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.95 E-value=2.4e-06 Score=70.47 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=41.3
Q ss_pred EeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCcccc
Q 019315 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLS 330 (343)
Q Consensus 276 LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~~ 330 (343)
-|+|++. ..+|+.+...++.|++++|+|+++...|++|++ +|++||||.|++..
T Consensus 11 ~~~k~~~-~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~ 65 (115)
T 2khi_A 11 SSGLVPR-GSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 65 (115)
T ss_dssp -----------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSC
T ss_pred cchhhcc-cCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCc
Confidence 3677777 589999888899999999999999999999999 48999999999975
No 30
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.87 E-value=7.3e-06 Score=87.59 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=57.7
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~ 246 (343)
...+++|++++|+|++|+++|+||+||.+.+|+||++++++.+. .|.
T Consensus 649 ~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v-------~d~-------------------------- 695 (785)
T 3bzc_A 649 LKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFV-------KDP-------------------------- 695 (785)
T ss_dssp STTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCC-------SCH--------------------------
T ss_pred hhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCcccc-------CCh--------------------------
Confidence 45688999999999999999999999999999999999984310 000
Q ss_pred CCCCCCCceeccceEEEEEEeec-CCCceEEeHHH
Q 019315 247 GSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRR 280 (343)
Q Consensus 247 ~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Kr 280 (343)
..++.+|+.+.++|+..+ +.++|.||.|.
T Consensus 696 -----~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 696 -----YEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp -----HHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred -----hheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 112355666677777765 56889998864
No 31
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.84 E-value=2.2e-05 Score=77.38 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEEEE----EeCCeEEEEeCC---CeeEEEeccccCc
Q 019315 169 EPKPGDFVIGVVVS----GNENKLDVNVGA---DLLGTMLTKEVLP 207 (343)
Q Consensus 169 ~~k~GdiVeG~VVs----I~~~gv~VDIG~---KsEG~IPisEls~ 207 (343)
.-+.|++|+|+|.+ ++++++|||+|. +.||+||.+|+.|
T Consensus 127 ~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP 172 (366)
T 1k0r_A 127 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP 172 (366)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT
T ss_pred HhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC
Confidence 34599999999999 999999999997 6999999999874
No 32
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=97.81 E-value=8.9e-05 Score=65.12 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=59.6
Q ss_pred cccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceec
Q 019315 165 VEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244 (343)
Q Consensus 165 ~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~I 244 (343)
.-..++.+|++++|+|++++++|+||++|. .+|++|++++.+.+ +. .|.. ... -+
T Consensus 74 ~iv~~p~~Gev~~G~V~~v~~~G~fv~l~~-~~glvh~s~l~~d~---~~---~d~~-----------------~~~-~~ 128 (180)
T 4ayb_E 74 MITYVPVVQEVVEGEVLQVDNYGVFVNLGP-MDGLVHISQITDDT---LK---YDNV-----------------RGI-IF 128 (180)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSC---EE---ECSS-----------------SCC-EE
T ss_pred eeeeeccCCCEEEEEEeeeccceEEEEECC-ccceEEeeecCCCc---cc---cchh-----------------cce-EE
Confidence 334678999999999999999999999985 79999999998532 10 0100 000 01
Q ss_pred cCCCCCCCCceeccceEEEEEEeec-----CCCceEEeHHH
Q 019315 245 SGGSGPGRPVVETGTVLFAEVLGRT-----LSGRPLLSTRR 280 (343)
Q Consensus 245 g~~ieg~i~v~eiGd~v~~eVl~~d-----e~G~I~LS~Kr 280 (343)
+... ..+.++|+.+.+.|+..+ ..++|.||.|+
T Consensus 129 g~~~---~~~~~~Gd~VrvkV~~v~~~~~~~~~rI~ls~k~ 166 (180)
T 4ayb_E 129 GEKS---KKVIQKGDKVRARVISVASTVTGRLPRIALTMRQ 166 (180)
T ss_dssp ETTT---CCCCCTTCEEEEEEEEECC-------CEEEECCS
T ss_pred Eecc---CeEECCCCEEEEEEEEEeCCCCcccCcEEEEcCC
Confidence 1111 234578888999998643 34689999987
No 33
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.79 E-value=4.1e-06 Score=91.80 Aligned_cols=87 Identities=11% Similarity=-0.081 Sum_probs=0.8
Q ss_pred cccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceec
Q 019315 165 VEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244 (343)
Q Consensus 165 ~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~I 244 (343)
.....+++|++|+|+|++|+++|+||+|+.+.+|+||++++++.. ...+ .
T Consensus 898 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~------~v~~------------------------~ 947 (1030)
T 3psf_A 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQ------LRRP------------------------A 947 (1030)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCc------ccCC------------------------H
Confidence 345789999999999999999999999998999999999998421 0000 0
Q ss_pred cCCCCCCCCceeccceEEEEEEeec-CCCceEEeHHHHHHHHHHH
Q 019315 245 SGGSGPGRPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWH 288 (343)
Q Consensus 245 g~~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~Krl~~~~aWe 288 (343)
..++.+|+.+.++|+..+ +.++|.||.|.-+.+.+|.
T Consensus 948 -------~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~~~ 985 (1030)
T 3psf_A 948 -------NEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQYV 985 (1030)
T ss_dssp ---------------------------------------------
T ss_pred -------HHcCCCCCEEEEEEEEEECCCCEEEEEechHHhccccc
Confidence 134567788888888876 6799999999877666664
No 34
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.55 E-value=0.0004 Score=61.80 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCC-CeeEEEeccccC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVL 206 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~-KsEG~IPisEls 206 (343)
|.+++||+|.|+|+.+..++++||||. ..+|++|++.+.
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~ 42 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP 42 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC
Confidence 678899999999999999999999999 899999999874
No 35
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.32 E-value=0.00016 Score=58.64 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcc
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPL 208 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~ 208 (343)
..++.|++|+|+|..++++|+||+|....+|+||++|+++.
T Consensus 57 ~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp CCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 57899999999999999999999997789999999999853
No 36
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.21 E-value=0.00054 Score=59.91 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=37.3
Q ss_pred cccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 165 VEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 165 ~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
.-..++++|++++|+|++++++|+||++|. .+|++|++++.
T Consensus 76 ~~~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~ 116 (171)
T 1y14_B 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMP 116 (171)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSC
T ss_pred EEEccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCC
Confidence 334678899999999999999999999998 99999999985
No 37
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.13 E-value=0.00062 Score=52.28 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=34.0
Q ss_pred hhCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCcccc
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLS 330 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~ 330 (343)
++.|++++|+|+++...|++|+++ |++||||.|++..
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~ 40 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS 40 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSS
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCc
Confidence 467999999999999999999995 9999999999964
No 38
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.11 E-value=0.0004 Score=56.27 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=34.0
Q ss_pred hCCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCccccC
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSR 331 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~~r 331 (343)
+.|+.|+++|+...+.|++|++ .+++|+||.|+++..
T Consensus 60 ~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 60 QQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp CTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 4799999999999999999999 689999999999864
No 39
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=97.09 E-value=0.00086 Score=56.41 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=38.0
Q ss_pred HhhCCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCccccC-CCChhh
Q 019315 293 IKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSR-VNNFTE 337 (343)
Q Consensus 293 a~e~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~~r-v~nlee 337 (343)
.++.|++++|+|+++...|++|++ +|++||||.|++... +.++.+
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~ 50 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINE 50 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGG
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccc
Confidence 356899999999999999999999 799999999999754 444433
No 40
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.08 E-value=0.00041 Score=66.81 Aligned_cols=85 Identities=24% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ 247 (343)
|.+++||+|.|+|+.+..++++|||+...+|+++++++....+ .+ +...+. +. ..
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg----~i---------------R~~~~~-D~-~~---- 145 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG----EL---------------RRRSAE-DE-LA---- 145 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC---------------------------------C-HH----
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccc----ee---------------ecccch-hh-hh----
Confidence 5789999999999999999999999988899999999852100 00 000000 00 00
Q ss_pred CCCCCCceeccceEEEEEEeecCCCceEEeHHH
Q 019315 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (343)
Q Consensus 248 ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Kr 280 (343)
..+.+++||.+.++|+..+.++.+.||.|+
T Consensus 146 ---m~~~l~vGDlV~ArVisv~~~~~i~LStr~ 175 (308)
T 2nn6_H 146 ---MRGFLQEGDLISAEVQAVFSDGAVSLHTRS 175 (308)
T ss_dssp ---HHHHSCSSCEECCEEEEEETTTEEEEECCS
T ss_pred ---hhccCCCCCEEEEEEEEcCCCCCEEEEecC
Confidence 124567788888888877777889998764
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.06 E-value=0.00059 Score=66.75 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=50.7
Q ss_pred eccceEEEEEEeecCCCceEEeHHHHHHHHHHHHH-----HHHhh--CCCcEEEEEEEEecCeeEEEECCeEEEEeCCcc
Q 019315 256 ETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV-----RQIKQ--LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328 (343)
Q Consensus 256 eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l-----~qa~e--~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl 328 (343)
++|+.+.+++...+-+.....+.|+... ..|.+. .+.|+ .|++|+|+|+++.++|++|++++++||||.+++
T Consensus 88 ~vGd~ie~~I~~~dfgR~aa~~aKqvi~-qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~ 166 (344)
T 1hh2_P 88 EVGSIVKKELNVKNFGRIAAQTAKQVLI-QRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEW 166 (344)
T ss_dssp CTTCEEEEECCCCCSSSCSGGGHHHHHH-HHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGS
T ss_pred cCCCEEEEEEccccCccHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHc
Confidence 5677777766543332333445455442 222222 12244 799999999999999999999999999999998
Q ss_pred c
Q 019315 329 L 329 (343)
Q Consensus 329 ~ 329 (343)
.
T Consensus 167 i 167 (344)
T 1hh2_P 167 I 167 (344)
T ss_dssp C
T ss_pred C
Confidence 5
No 42
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=8.4e-05 Score=61.89 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEEEecCeeEEEECCe--EEEEeCCccccC-CCChhh
Q 019315 285 MAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL--RAFLPKAELLSR-VNNFTE 337 (343)
Q Consensus 285 ~aWe~l~qa~e~g~~VeGkVve~nKGGliVeIeGl--rgFIP~SQl~~r-v~nlee 337 (343)
..|+.+...++.|++++|+|+++...|++|+++|+ +||||.|++... +.++.+
T Consensus 11 ~~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~ 66 (119)
T 2cqo_A 11 GRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSE 66 (119)
T ss_dssp CCCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHH
T ss_pred cchhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhh
Confidence 45665656678999999999999999999999765 999999999754 445443
No 43
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=96.98 E-value=0.00068 Score=62.06 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=38.1
Q ss_pred hhcccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 163 VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 163 Le~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
+.....++++|++++|+|++++++|+||++|. .+|+||++++.
T Consensus 74 ~~~i~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~ 116 (215)
T 2b8k_G 74 YRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMP 116 (215)
T ss_dssp CCEEEECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSC
T ss_pred hhhheeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCC
Confidence 33344678899999999999999999999998 89999999996
No 44
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00094 Score=53.87 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=37.2
Q ss_pred HhhCCCcEEEEEEEEecCeeEEEEC----CeEEEEeCCcc-ccC-CCChhh
Q 019315 293 IKQLNEPIEVKFTEWNTGGLLTRIE----GLRAFLPKAEL-LSR-VNNFTE 337 (343)
Q Consensus 293 a~e~g~~VeGkVve~nKGGliVeIe----GlrgFIP~SQl-~~r-v~nlee 337 (343)
.++.|++++|+|+++...|++|+++ +++||||.|++ +.. ++++.+
T Consensus 9 ~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~ 59 (103)
T 2eqs_A 9 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 59 (103)
T ss_dssp SCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHH
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCccc
Confidence 3568999999999999999999996 79999999999 432 444443
No 45
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=96.95 E-value=0.00086 Score=59.49 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCcEEEEEEEEecCeeEEEE---CCeEEEEeCCccccC-CCChhhh
Q 019315 296 LNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAELLSR-VNNFTEL 338 (343)
Q Consensus 296 ~g~~VeGkVve~nKGGliVeI---eGlrgFIP~SQl~~r-v~nleel 338 (343)
.|++++|+|+++...|++|++ +|++||||.|+++.+ ++++.++
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~ 61 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKL 61 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCC
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHc
Confidence 899999999999999999999 689999999999864 5554443
No 46
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=96.94 E-value=0.00038 Score=55.08 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=32.7
Q ss_pred hCCCcEEEEEEEEecCeeEEEEC---CeEEEEeCC-ccccC
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKA-ELLSR 331 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIe---GlrgFIP~S-Ql~~r 331 (343)
+.|++++|+|+ +...|++|+++ |++||+|.| +++.+
T Consensus 10 ~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~ 49 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMD 49 (88)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHH
T ss_pred CCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcc
Confidence 57999999999 99999999994 799999999 99753
No 47
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.90 E-value=0.00091 Score=59.78 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=32.7
Q ss_pred hCCCcEEEEEEEEecCeeEEEE---CCeEEEEeCCccccC-CCChhhh
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAELLSR-VNNFTEL 338 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeI---eGlrgFIP~SQl~~r-v~nleel 338 (343)
+.|++++|+|+++...|++|++ +|++||||.|+++.+ ++++.++
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~ 61 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKL 61 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-----------
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHh
Confidence 6899999999999999999999 689999999999864 5555543
No 48
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=96.75 E-value=0.0016 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=37.0
Q ss_pred hhcccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 163 VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 163 Le~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
+.....++++|++++|+|++++++|+||++|. .+|++|++++.
T Consensus 72 ~~~~~~~~~~Gev~~G~V~~v~~fG~fV~l~~-~~glvhis~l~ 114 (172)
T 2c35_B 72 YKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGP-MSCFISRHSIP 114 (172)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSC
T ss_pred EEEEEeeCCCCCEEEEEEEEEeCCEEEEEECC-EEEEEEHHHCC
Confidence 33345678899999999999999999999974 66999999985
No 49
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.72 E-value=0.0053 Score=62.96 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=37.1
Q ss_pred CCCCCCCEEEEEEEEEeCC--eEEEEeCCCeeEEEeccccCc
Q 019315 168 YEPKPGDFVIGVVVSGNEN--KLDVNVGADLLGTMLTKEVLP 207 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~--gv~VDIG~KsEG~IPisEls~ 207 (343)
....+|++..|+|++|.+. ++|||||.+..||+|++|+.+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~ 82 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAR 82 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCG
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcCh
Confidence 4577899999999999999 999999999999999999974
No 50
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.59 E-value=0.0071 Score=57.77 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
|-+++||+|.|+|+.+..+.+.|||+....|+||.+++.
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~ 161 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE 161 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC
Confidence 678999999999999999999999999999999998875
No 51
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.34 E-value=0.00029 Score=75.13 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=48.2
Q ss_pred CCCEE--EEEEEE--EeCCeEEEEeCCCeeEEEeccccCcccccc----hhhhhhhhhhhhhHhhhcceeeeecCCcc-e
Q 019315 172 PGDFV--IGVVVS--GNENKLDVNVGADLLGTMLTKEVLPLYDKE----MDFLLCDLKKDAEEFMVRGKMGIVKDDDA-I 242 (343)
Q Consensus 172 ~GdiV--eG~VVs--I~~~gv~VDIG~KsEG~IPisEls~~~~ke----~e~l~~d~~k~~ee~~VeGkV~~i~~dga-V 242 (343)
.|+++ .|++++ +.+.|++|||+. +|.++++...+...+. ++.+ .+..+...+..++|+|+.++++|+ |
T Consensus 609 i~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~~i~~i-~~p~~~~vG~i~~G~V~~i~~fGaFV 685 (757)
T 1e3p_A 609 IGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARATINGI-ANPTSPEVGERILGSVVKTTTFGAFV 685 (757)
T ss_dssp ------------CTTCCCCCSCC----------CCCBSSHHHHCC----------------------CBEEECC-CSCEE
T ss_pred eehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHHHHHHh-cchhhcccccEEEEEEEEccccEEEE
Confidence 36665 477887 567899999984 8999999876331110 1111 111233346889999999999999 9
Q ss_pred eccCCCCCCCCceec----cceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEEEEEEEecCe
Q 019315 243 AMSGGSGPGRPVVET----GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311 (343)
Q Consensus 243 ~Ig~~ieg~i~v~ei----Gd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeGkVve~nKGG 311 (343)
.+.++++||+|++++ +.. + .++..+.++.|+.|+++|.++.+.|
T Consensus 686 ~l~~g~eGLvHiSel~~~~s~~------------r-------------v~~~~~~~~vGd~V~VkVi~vd~~g 733 (757)
T 1e3p_A 686 SLLPGKDGLLHISQIRKLAGGK------------R-------------VENVEDVLGVGQKVQVEIAEIDSRG 733 (757)
T ss_dssp CCC---CCCCC--------------------------------------------CCSSCBCCCCCCCCCSSC
T ss_pred EEcCCcEEEEEhHHhccccCCC------------c-------------ccCcccccCCCCEEEEEEEEECCCC
Confidence 998889999999876 210 1 1344567889999999999998654
No 52
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.06 E-value=0.0019 Score=56.68 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=37.7
Q ss_pred hhcccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 163 VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 163 Le~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
+..-..++.+|++++|+|+++++.|+||++|. .+|++|++++.
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~ 117 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVP 117 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSC
T ss_pred EEEeeeccCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCC
Confidence 44445678999999999999999999999985 67999999995
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.94 E-value=0.0012 Score=69.99 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred eecCCCceEEeHHHHHH----HHHHHHHHHHhhCCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCccccC-CCChhh
Q 019315 267 GRTLSGRPLLSTRRLFR----KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSR-VNNFTE 337 (343)
Q Consensus 267 ~~de~G~I~LS~Krl~~----~~aWe~l~qa~e~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~~r-v~nlee 337 (343)
.++++|.+.+|...... ...|+.+...++.|++++|+|+++...|++|++ +|++||||.|+++.+ ++++++
T Consensus 594 dI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~ 670 (723)
T 3cdi_A 594 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 670 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCccc
Confidence 34567888887654432 234666666788999999999999999999999 589999999999763 444433
No 54
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.87 E-value=0.0012 Score=70.20 Aligned_cols=70 Identities=7% Similarity=0.022 Sum_probs=3.6
Q ss_pred ecCCCceEEeHH---HHH-HHHHHHHHHHHhhCCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCccccC-CCChhh
Q 019315 268 RTLSGRPLLSTR---RLF-RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSR-VNNFTE 337 (343)
Q Consensus 268 ~de~G~I~LS~K---rl~-~~~aWe~l~qa~e~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~~r-v~nlee 337 (343)
++++|.+.++-. .++ .+..|+.+...++.|++++|+|+++..+|++|++ +|++||||.|+++.+ +.++++
T Consensus 605 i~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d 680 (726)
T 4aid_A 605 INDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 680 (726)
T ss_dssp ---------CCSCHHHHHHHHHC-----------------------------------------------------
T ss_pred EECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccc
Confidence 356677766542 222 2345777878889999999999999999999999 689999999999864 555444
No 55
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=95.73 E-value=0.009 Score=57.48 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=37.6
Q ss_pred hCCCcEEEEEEEEecCeeEEEEC---CeEEEEeCCccccC-CCChhhh
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAELLSR-VNNFTEL 338 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIe---GlrgFIP~SQl~~r-v~nleel 338 (343)
+.|++++|+|+++...|++|+++ |++||||.|+++++ ++++.++
T Consensus 12 ~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~ 59 (308)
T 1q8k_A 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKL 59 (308)
T ss_dssp SSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTT
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHh
Confidence 47999999999999999999994 89999999999864 5555544
No 56
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=95.65 E-value=0.014 Score=50.71 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=33.0
Q ss_pred CCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 296 ~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
.|++++|+|+++++.|++|+++.++||+|.|+++.
T Consensus 81 ~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~ 115 (172)
T 2c35_B 81 KGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPS 115 (172)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCT
T ss_pred CCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCC
Confidence 79999999999999999999988999999999963
No 57
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=95.60 E-value=0.015 Score=50.63 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=33.2
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
..|++++|+|+++++.|++|+++.++||+|.|+++.
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~ 117 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQ 117 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCT
T ss_pred CCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCC
Confidence 379999999999999999999966999999999963
No 58
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=95.55 E-value=0.013 Score=51.49 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.6
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
..|++++|+|+++.+.|++|++.+++||+|.|++..
T Consensus 80 ~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~ 115 (187)
T 1go3_E 80 EMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMD 115 (187)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCS
T ss_pred CCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCC
Confidence 479999999999999999999988999999999964
No 59
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=95.40 E-value=0.036 Score=57.84 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=56.9
Q ss_pred CCCCCCC--EEEEEEEEEeCCeEEEEe-CCCeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceec
Q 019315 168 YEPKPGD--FVIGVVVSGNENKLDVNV-GADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244 (343)
Q Consensus 168 ~~~k~Gd--iVeG~VVsI~~~gv~VDI-G~KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~I 244 (343)
.+-+.|+ +.+|+|++|+++|+||.| ..+.+|+||++++.... +++.+|.. .+.+.. ..
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~----d~~~~d~~--------~~~l~~-~~------ 614 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR----DELVCSQE--------NGTVQI-KG------ 614 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCG----GGEEEETT--------TTEEEE-TT------
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcC----ceeEEccc--------ccEEEe-cC------
Confidence 3456899 999999999999999999 57899999999996310 01111110 011100 00
Q ss_pred cCCCCCCCCceeccceEEEEEEeec-CCCceEEeH
Q 019315 245 SGGSGPGRPVVETGTVLFAEVLGRT-LSGRPLLST 278 (343)
Q Consensus 245 g~~ieg~i~v~eiGd~v~~eVl~~d-e~G~I~LS~ 278 (343)
.....+|+.+.++|+..+ ..++|.+|.
T Consensus 615 -------~~~~~lGD~V~VkV~~vd~~~~~I~~~l 642 (644)
T 2id0_A 615 -------ETVYKVTDVIDVTIAEVRMETRSIIARP 642 (644)
T ss_dssp -------EEEEETTCEEEEEEEEEETTTTEEEEEE
T ss_pred -------CCEeCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 123577888888888765 568888874
No 60
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=95.24 E-value=0.026 Score=49.77 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCcEEEEEEEEecCeeEEEE-C----------CeEEEEeCCccccC-CCChhhh
Q 019315 297 NEPIEVKFTEWNTGGLLTRI-E----------GLRAFLPKAELLSR-VNNFTEL 338 (343)
Q Consensus 297 g~~VeGkVve~nKGGliVeI-e----------GlrgFIP~SQl~~r-v~nleel 338 (343)
|++|.|+|+++...|++|+| . ++.|+||.|++... ++++.++
T Consensus 58 GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~ 111 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEA 111 (179)
T ss_dssp TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGT
T ss_pred CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhc
Confidence 99999999999999999999 4 68999999999764 4555444
No 61
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=94.89 E-value=0.027 Score=50.63 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=37.3
Q ss_pred ccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcc
Q 019315 166 EYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPL 208 (343)
Q Consensus 166 ~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~ 208 (343)
.+.++.+|++++|+|.++++.|+||.+| ..+|+++.+++.+.
T Consensus 75 ~~f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d 116 (203)
T 3ayh_B 75 IIFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFD 116 (203)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCT
T ss_pred EEEccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCC
Confidence 3467889999999999999999999997 68999999999743
No 62
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=94.70 E-value=0.033 Score=48.65 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=33.9
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
..|++++|+|+++++.|++|+++.+.||+|.|++..
T Consensus 80 ~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~ 115 (180)
T 4ayb_E 80 VVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITD 115 (180)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCS
T ss_pred cCCCEEEEEEeeeccceEEEEECCccceEEeeecCC
Confidence 489999999999999999999988999999999964
No 63
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=94.44 E-value=0.03 Score=51.17 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=33.3
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
..|++++|+|+++++.|++|+++.++||+|.|+|+.
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d 117 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQ 117 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCS
T ss_pred CCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCc
Confidence 579999999999999999999965999999999974
No 64
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=94.21 E-value=0.01 Score=52.03 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 296 ~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
.|++++|+|+++++.|++|+++.++||+|.|+++.
T Consensus 84 ~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~ 118 (172)
T 3h0g_G 84 RGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118 (172)
T ss_dssp TTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCT
T ss_pred CCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCC
Confidence 79999999999999999999988999999999964
No 65
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.061 Score=49.14 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.9
Q ss_pred cccCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcc
Q 019315 165 VEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPL 208 (343)
Q Consensus 165 ~~~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~ 208 (343)
..+.+..+|++++|+|.++++.|+||.+....+|+++.+++.+.
T Consensus 74 ~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d 117 (218)
T 2ckz_B 74 AVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFE 117 (218)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCT
T ss_pred EEEecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCC
Confidence 34567889999999999999999999993368999999999743
No 66
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=93.39 E-value=0.045 Score=44.78 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.1
Q ss_pred HhhCCCcEEEEEEEEecCeeEEEEC--CeEEEEeCCcc
Q 019315 293 IKQLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAEL 328 (343)
Q Consensus 293 a~e~g~~VeGkVve~nKGGliVeIe--GlrgFIP~SQl 328 (343)
.++.|++++|+|+++...|++|+++ ++.||+|.+.+
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~ 55 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKA 55 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHH
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecc
Confidence 3568999999999999999999996 78999998775
No 67
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=93.35 E-value=0.23 Score=52.83 Aligned_cols=85 Identities=13% Similarity=-0.049 Sum_probs=49.5
Q ss_pred CEEEEEEEEEeCCeEEEEeCC-CeeEEEeccccCcccccchhhhhhhhhhhhhHhhhcceeeeecCCcceeccCCCCCCC
Q 019315 174 DFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR 252 (343)
Q Consensus 174 diVeG~VVsI~~~gv~VDIG~-KsEG~IPisEls~~~~ke~e~l~~d~~k~~ee~~VeGkV~~i~~dgaV~Ig~~ieg~i 252 (343)
++.+|+|++|.++|+||.|.. +.||+||++++.... ++...|.. +..+.. ... +. ...
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~----d~~~fd~~--------~~~l~g-~~~-----~~---~~~ 729 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDP----NSAAFDEV--------EYKLTF-VPT-----NS---DKP 729 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCG----GGCEEETT--------TTEEEE-CCT-----TC---SSC
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCC----ceeEEccc--------ccEEEE-ecC-----CC---ccC
Confidence 799999999999999999965 799999999995110 01111110 001100 000 00 012
Q ss_pred CceeccceEEEEEEeecC----CCceEEeHH
Q 019315 253 PVVETGTVLFAEVLGRTL----SGRPLLSTR 279 (343)
Q Consensus 253 ~v~eiGd~v~~eVl~~de----~G~I~LS~K 279 (343)
.+..+|+.+.+.|+..+. .++|.||+|
T Consensus 730 ~~~~lGD~V~VkV~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 730 RDVYVFDKVEVQVRSVMDPITSKRKAELLLK 760 (760)
T ss_dssp EEEETTCEEEEEEC--------CCEEEC---
T ss_pred cEEecCCEEEEEEEEEECccccCCcEEEEeC
Confidence 356788889998887653 389999875
No 68
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=92.92 E-value=0.056 Score=48.99 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=37.0
Q ss_pred hhCCCcEEEEEEEEecCeeEEEEC---------CeEEEEeCCccccC-CC--Chhhh
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRIE---------GLRAFLPKAELLSR-VN--NFTEL 338 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeIe---------GlrgFIP~SQl~~r-v~--nleel 338 (343)
.+.|++|.|+|+++...|++|+|. +++|+||.|++... ++ ++.++
T Consensus 79 p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~ 135 (209)
T 2nn6_I 79 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKS 135 (209)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGT
T ss_pred CCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhh
Confidence 468999999999999999999984 56899999999754 44 45444
No 69
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=92.88 E-value=0.064 Score=57.48 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=38.3
Q ss_pred hhCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCccccC-CCChhhh
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLSR-VNNFTEL 338 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~r-v~nleel 338 (343)
++.|++++|+|+++.++|++|+++ ++.||||.|+++.+ +.++.+.
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~ 698 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEV 698 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHH
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhhe
Confidence 568999999999999999999995 78999999999864 5555443
No 70
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.08 Score=57.97 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=32.0
Q ss_pred CCEEEEEEEEEeCCeEEEEeCC-CeeEEEeccccC
Q 019315 173 GDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVL 206 (343)
Q Consensus 173 GdiVeG~VVsI~~~gv~VDIG~-KsEG~IPisEls 206 (343)
|++.+|+|++|.++|+||.|.. +.||+||++++.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~ 921 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLT 921 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTC
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEecccc
Confidence 9999999999999999999964 899999999996
No 71
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.1 Score=58.39 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=39.1
Q ss_pred HhhCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCccccC--CCChhhh
Q 019315 293 IKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLSR--VNNFTEL 338 (343)
Q Consensus 293 a~e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~r--v~nleel 338 (343)
.++.|++|+|+|+++...|++|+++ |+.|+||.|+++.+ +.++.+.
T Consensus 899 ~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v 947 (1219)
T 3psi_A 899 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEI 947 (1219)
T ss_dssp TSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTT
T ss_pred hCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHc
Confidence 4678999999999999999999995 99999999999864 4555543
No 72
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=91.25 E-value=0.23 Score=45.54 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=33.6
Q ss_pred hCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~ 330 (343)
+.|++|.|+|+++...|++|+++ ...|+||.|++..
T Consensus 56 ~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~ 92 (229)
T 2ba0_A 56 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPE 92 (229)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccc
Confidence 68999999999999999999996 5999999999984
No 73
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=90.56 E-value=0.14 Score=47.75 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=33.8
Q ss_pred hCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCccccC
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLSR 331 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~r 331 (343)
+.|++|.|+|+++...|++|+++ +..|+||.|++..+
T Consensus 73 ~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~ 110 (251)
T 2je6_I 73 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGR 110 (251)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTS
T ss_pred CCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCC
Confidence 68999999999999999999996 69999999999743
No 74
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=90.05 E-value=0.16 Score=50.13 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=32.8
Q ss_pred HHHHhh--CCCcEEEEEEE----EecCeeEEEECC----eEEEEeCCcccc
Q 019315 290 VRQIKQ--LNEPIEVKFTE----WNTGGLLTRIEG----LRAFLPKAELLS 330 (343)
Q Consensus 290 l~qa~e--~g~~VeGkVve----~nKGGliVeIeG----lrgFIP~SQl~~ 330 (343)
+.+.|+ .|++|+|+|.+ +.+++++|++++ ++|+||.+++..
T Consensus 122 i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP 172 (366)
T 1k0r_A 122 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP 172 (366)
T ss_dssp -----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT
T ss_pred HHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC
Confidence 334454 99999999999 999999999976 999999998853
No 75
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=89.92 E-value=0.15 Score=46.68 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=33.7
Q ss_pred hCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~ 330 (343)
+.|++|.|+|+++...|++|+++ +..|+||.|++..
T Consensus 65 ~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~ 101 (235)
T 2z0s_A 65 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLG 101 (235)
T ss_dssp CTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHT
T ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCC
Confidence 79999999999999999999996 6999999999964
No 76
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.068 Score=58.90 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHhhCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCccccC--CCChhh
Q 019315 292 QIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELLSR--VNNFTE 337 (343)
Q Consensus 292 qa~e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~~r--v~nlee 337 (343)
+.++.|++|+|+|+++..+|++|+++ |+.|+||.|+++.+ +.++.+
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~ 949 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANE 949 (1030)
T ss_dssp -------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHH
Confidence 35678999999999999999999995 89999999999754 344443
No 77
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=89.27 E-value=0.71 Score=48.10 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=32.4
Q ss_pred hCCC--cEEEEEEEEecCeeEEEE--CCeEEEEeCCccc
Q 019315 295 QLNE--PIEVKFTEWNTGGLLTRI--EGLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~--~VeGkVve~nKGGliVeI--eGlrgFIP~SQl~ 329 (343)
+.|+ .++|+|+++.+.|++|++ .|++||||.|++.
T Consensus 557 ~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~ 595 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 (644)
T ss_dssp GTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTC
T ss_pred ccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhcc
Confidence 5788 999999999999999999 4899999999995
No 78
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=85.73 E-value=0.55 Score=42.05 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=31.1
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~ 329 (343)
..|++++|+|+++++.|++|+++.+.|+++.|++.
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~ 114 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDML 114 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGB
T ss_pred CCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhC
Confidence 47999999999999999999997688888888774
No 79
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=84.50 E-value=0.26 Score=46.10 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=47.3
Q ss_pred HhhhcceeeeecCCcc-eecc--CCCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEE
Q 019315 226 EFMVRGKMGIVKDDDA-IAMS--GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEV 302 (343)
Q Consensus 226 e~~VeGkV~~i~~dga-V~Ig--~~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeG 302 (343)
+..+.|+|..++++|+ |.++ ++++||+|+++++. +++ ..+.+.++.|+.|.+
T Consensus 12 G~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~------------~~v-------------~~~~~~~~vGd~V~V 66 (266)
T 3cw2_C 12 GEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSS------------KWV-------------KNIRDVLKENRKVIV 66 (266)
T ss_dssp TCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSC------------SSC-------------CCHHHHSCTTCEEEE
T ss_pred CCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCc------------ccc-------------cCHHHhCcCCCEEEE
Confidence 4578899999999999 9997 78999999998841 111 124567889999999
Q ss_pred EEEEEec
Q 019315 303 KFTEWNT 309 (343)
Q Consensus 303 kVve~nK 309 (343)
+|+++..
T Consensus 67 kVi~vd~ 73 (266)
T 3cw2_C 67 KVIRVDR 73 (266)
T ss_dssp EECCCCS
T ss_pred EEEEEeC
Confidence 9999875
No 80
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=82.70 E-value=0.95 Score=41.20 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=30.2
Q ss_pred CCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCccc
Q 019315 296 LNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELL 329 (343)
Q Consensus 296 ~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~ 329 (343)
.|++++|+|+++++.|++|++ +-+.|+++.|++.
T Consensus 81 vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~ 115 (218)
T 2ckz_B 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNML 115 (218)
T ss_dssp TTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTS
T ss_pred CCCEEEEEEEEEccCcEEEEccCccceEEEcHHHC
Confidence 799999999999999999999 4578888888874
No 81
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=82.46 E-value=0.94 Score=46.43 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=32.1
Q ss_pred hCCCcEEEEEEEEecC--eeEEEEC-CeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNTG--GLLTRIE-GLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nKG--GliVeIe-GlrgFIP~SQl~ 329 (343)
..|.+..|+|+++.++ |++|+++ |-.||||.|++.
T Consensus 44 ~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~ 81 (517)
T 2bx2_L 44 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 81 (517)
T ss_dssp CTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSC
T ss_pred CCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcC
Confidence 4699999999999999 9999994 888999999985
No 82
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=80.47 E-value=0.32 Score=45.85 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=47.5
Q ss_pred HhhhcceeeeecCCcc-eecc--CCCCCCCCceeccceEEEEEEeecCCCceEEeHHHHHHHHHHHHHHHHhhCCCcEEE
Q 019315 226 EFMVRGKMGIVKDDDA-IAMS--GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEV 302 (343)
Q Consensus 226 e~~VeGkV~~i~~dga-V~Ig--~~ieg~i~v~eiGd~v~~eVl~~de~G~I~LS~Krl~~~~aWe~l~qa~e~g~~VeG 302 (343)
+..+.|+|+.++++|+ |.++ ++++||+|+++++... +. ...+.++.|+.|.+
T Consensus 12 Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~------------v~-------------~~~~~~kvGd~V~v 66 (275)
T 3aev_A 12 GEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTW------------VR-------------NIRDYLKEGQKVVA 66 (275)
T ss_dssp TCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSC------------CS-------------CGGGTCCTTCEEEE
T ss_pred CCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCccc------------cc-------------CHHhccCCCCEEEE
Confidence 4578899999999999 9997 5899999999884211 10 12346789999999
Q ss_pred EEEEEec-Cee
Q 019315 303 KFTEWNT-GGL 312 (343)
Q Consensus 303 kVve~nK-GGl 312 (343)
+|.++.. .|-
T Consensus 67 kVi~vD~~~~~ 77 (275)
T 3aev_A 67 KVIRVDPRKGH 77 (275)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCE
Confidence 9999986 443
No 83
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=80.37 E-value=2.2 Score=46.76 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=32.2
Q ss_pred hCCCcEEEEEEEEecCeeEEEE-C-CeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRI-E-GLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeI-e-GlrgFIP~SQl~ 329 (343)
..|+..+|.|+++.+.|++|.+ + |++|+||.|++.
T Consensus 885 ~~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~ 921 (977)
T 2wp8_J 885 NNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLT 921 (977)
T ss_dssp HTTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTC
T ss_pred ccceEEEEEEEEEcCCeEEEEEcCCCeEEEEEecccc
Confidence 4599999999999999999999 4 899999999985
No 84
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=78.69 E-value=2.6 Score=44.84 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=32.3
Q ss_pred HhhCCCcEEEEEEEEecCeeEEEE-C-CeEEEEeCCccc
Q 019315 293 IKQLNEPIEVKFTEWNTGGLLTRI-E-GLRAFLPKAELL 329 (343)
Q Consensus 293 a~e~g~~VeGkVve~nKGGliVeI-e-GlrgFIP~SQl~ 329 (343)
+.+..+.++|+|+++.+.|++|.+ + |++||||.|++.
T Consensus 666 l~~~~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~ 704 (760)
T 2vnu_D 666 MRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLT 704 (760)
T ss_dssp HHTCCSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHC
T ss_pred hhcCceEEEEEEEEEECCeEEEEEeCCCcEEEEEecccc
Confidence 334458999999999999999999 4 899999999984
No 85
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=60.57 E-value=5.5 Score=38.12 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=31.9
Q ss_pred hCCCcEEEEEEEEecCeeEEEEC-CeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIe-GlrgFIP~SQl~ 329 (343)
+.|++|.|+|+++...|++|+|. ...|+++.|++.
T Consensus 94 ~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~ 129 (308)
T 2nn6_H 94 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMN 129 (308)
T ss_dssp CSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC
T ss_pred CCCCEEEEEEEEEeCceEEEEECCCcCCceechhhc
Confidence 58999999999999999999997 468999999985
No 86
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=39.11 E-value=28 Score=31.24 Aligned_cols=40 Identities=10% Similarity=0.315 Sum_probs=32.4
Q ss_pred cCCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 167 ~~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
..++.+|++++|+|.++++.++-+-+=+-...+||...+-
T Consensus 124 VFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip 163 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIP 163 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSC
T ss_pred EEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCC
Confidence 3678899999999999999888775423567899998874
No 87
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=38.42 E-value=22 Score=31.84 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=29.4
Q ss_pred CCCcEEEEEEEEecCeeEEEE-CCeEEEEeCCccc
Q 019315 296 LNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELL 329 (343)
Q Consensus 296 ~g~~VeGkVve~nKGGliVeI-eGlrgFIP~SQl~ 329 (343)
.|++++|+|+..++.|+-+-+ +=+.+|||+..|.
T Consensus 129 ~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip 163 (214)
T 2rf4_A 129 VGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIP 163 (214)
T ss_dssp TTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSC
T ss_pred CCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCC
Confidence 699999999999999988755 4478999999884
No 88
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=36.91 E-value=51 Score=25.63 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=28.4
Q ss_pred CCCcEEEEEEEEecC-eeEEEEC-CeEEEEeCCcccc
Q 019315 296 LNEPIEVKFTEWNTG-GLLTRIE-GLRAFLPKAELLS 330 (343)
Q Consensus 296 ~g~~VeGkVve~nKG-GliVeIe-GlrgFIP~SQl~~ 330 (343)
.+...+|+|+.++|| |+|..-+ |-+-|++.|.+..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~ 51 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSG 51 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCS
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhcc
Confidence 468889999999986 7776554 5899999999863
No 89
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=36.06 E-value=75 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=33.8
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccCcc
Q 019315 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPL 208 (343)
Q Consensus 170 ~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls~~ 208 (343)
...|+.+.+.|++++++++.|-+..+..+.|+.+.+.+.
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA 69 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAA 69 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTT
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhh
Confidence 445999999999999999999997667788999998865
No 90
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=32.39 E-value=48 Score=23.38 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=24.4
Q ss_pred hhCCCcEEEEEEEE-ecCeeEEEECCeEEEEeCCcccc
Q 019315 294 KQLNEPIEVKFTEW-NTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 294 ~e~g~~VeGkVve~-nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
++.|++|.+ .+. ..+=..++..|-+|++|.+.+..
T Consensus 26 ~~~Gd~i~v--~~~~~~~Ww~g~~~g~~G~~P~~yv~~ 61 (68)
T 2djq_A 26 FNKGDVILL--RRQLDENWYQGEINGVSGIFPASSVEV 61 (68)
T ss_dssp CCTTCEEEE--EECCCSSEEEEEETTEEEEEESSSEET
T ss_pred CCCCCEEEE--EEecCCCEEEEEECCcEEEeehHHEEE
Confidence 346888765 333 44446677889999999998753
No 91
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=32.27 E-value=6.7 Score=36.41 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCCCccceeeeccccccccC--C------CcccccchhhhHhhhhhceeeecCCccccccc
Q 019315 19 APPLSTCSFVQNGNAKYPLQ--Q------SRKFHSFAASFRFLRSTHIVFCSQKDVFDDLS 71 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (343)
++..|+|+.++ +.+-|-.| + .++|.-|.-|+.++++.+ +-+|+++++=
T Consensus 65 s~~~s~~~~i~-g~iFy~~h~~Ky~~~dfe~Ay~ef~~sr~~L~~i~----~lkdl~~~F~ 120 (246)
T 2ph7_A 65 SLHFSEKVKIG-DVLFYHPHVIKPEKEDFEQAYFEYKQSKKFLDAFD----IMREVTDRFF 120 (246)
T ss_dssp -CCCCEEEEET-TEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT
T ss_pred cccchheEEEC-CEEEEeccCCCCChHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHH
Confidence 36788997764 34434333 1 356778888888877753 2355555543
No 92
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=28.81 E-value=86 Score=22.62 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCCCCCCEEEEEEEEEeCCe-EEEEe-CCCeeEEEecccc
Q 019315 168 YEPKPGDFVIGVVVSGNENK-LDVNV-GADLLGTMLTKEV 205 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~g-v~VDI-G~KsEG~IPisEl 205 (343)
-.+++||+|. |+...+++ .+..+ ..+..|++|.+=+
T Consensus 23 Ls~~~Gd~i~--v~~~~~~gWw~g~~~~~g~~G~~P~nyV 60 (65)
T 2lj0_A 23 LELRDGDIVD--VMEKCDDGWFVGTSRRTKQFGTFPGNYV 60 (65)
T ss_dssp CCBCTTCEEE--EEEECTTSEEEEEETTTCCEEEEETTSE
T ss_pred cCCCCCCEEE--EeEeCCCCEEEEEECCCCCEEEEehhHe
Confidence 4688999996 66655554 44343 3457899997644
No 93
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=28.21 E-value=77 Score=22.46 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=25.3
Q ss_pred hhCCCcEEEEEEEEecCeeEEEE---CCeE---EEEeCCccc
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRI---EGLR---AFLPKAELL 329 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeI---eGlr---gFIP~SQl~ 329 (343)
++.|++|.+ .....+=..++. +|-. |++|.+.+.
T Consensus 29 ~~~Gd~i~v--~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~ 68 (72)
T 2kgt_A 29 FRAGDVFHV--ARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68 (72)
T ss_dssp CCTTCCEEE--EEECSSCEEEEEECTTSCEEEEEEECTTTSE
T ss_pred CCCCCEEEE--eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEE
Confidence 457899888 444556577877 6888 999998764
No 94
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=27.18 E-value=72 Score=22.48 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=24.3
Q ss_pred hhCCCcEEEEEEEEecC-eeEEEECCeEEEEeCCcccc
Q 019315 294 KQLNEPIEVKFTEWNTG-GLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKG-GliVeIeGlrgFIP~SQl~~ 330 (343)
++.|++|.+ .+.... -...+..|-+|++|.+.+..
T Consensus 22 f~~Gd~i~v--~~~~~~~Ww~g~~~g~~G~fP~~yv~~ 57 (67)
T 2bzy_A 22 LEVGDIVKV--TRMNINGQWEGEVNGRKGLFPFTHVKI 57 (67)
T ss_dssp BCTTCEEEE--EEECSSSEEEEEETTEEEEEEGGGEEE
T ss_pred cCCCCEEEE--EEecCCCeEEEEeCCcEEEEehHHeEE
Confidence 346888874 343344 35667789999999998753
No 95
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=26.91 E-value=34 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=25.5
Q ss_pred hhCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
++.|++|.+ .+...+=..++..|-+|++|.+.+..
T Consensus 27 ~~~Gd~i~v--~~~~~~Ww~g~~~g~~G~~P~~yv~~ 61 (69)
T 1uhf_A 27 FTEGEEILV--TQKDGEWWTGSIGDRSGIFPSNYVKP 61 (69)
T ss_dssp BCTTCEEEE--CEEETTEEEECSTTCCEEECGGGCEE
T ss_pred CCCCCEEEE--EEeCCCEEEEEeCCcEEEEchHHeEE
Confidence 346888874 34455557777789999999998753
No 96
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=26.74 E-value=60 Score=22.47 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=24.3
Q ss_pred hhCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
++.|++|.+.=.....+=..++..|-+|++|.+.+..
T Consensus 20 ~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~ 56 (62)
T 2j6f_A 20 IRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56 (62)
T ss_dssp BCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEE
T ss_pred CcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEE
Confidence 3467777643321244446677889999999998753
No 97
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=26.59 E-value=1.1e+02 Score=20.82 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=23.5
Q ss_pred hhCCCcEEEEEEEE-ecCeeEEEECCeEEEEeCCccc
Q 019315 294 KQLNEPIEVKFTEW-NTGGLLTRIEGLRAFLPKAELL 329 (343)
Q Consensus 294 ~e~g~~VeGkVve~-nKGGliVeIeGlrgFIP~SQl~ 329 (343)
++.|++|.+ .+. ..+=..++..|-.|++|.+.+.
T Consensus 26 ~~~Gd~i~v--~~~~~~~W~~g~~~g~~G~~P~~yv~ 60 (65)
T 3u23_A 26 LKVGDIIDI--NEEVEEGWWSGTLNNKLGLFPSNFVK 60 (65)
T ss_dssp BCTTCEEEE--EEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred CCCCCEEEE--EEecCCCEEEEEECCCEEEeehHHEE
Confidence 346887763 333 3444667788999999988764
No 98
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.11 E-value=1.1e+02 Score=23.32 Aligned_cols=37 Identities=11% Similarity=-0.082 Sum_probs=25.3
Q ss_pred hhCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
++.|++|.+.-..-..|=+.++..|-+|++|.+.+..
T Consensus 44 f~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~ 80 (97)
T 2csq_A 44 FKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSE 80 (97)
T ss_dssp BCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEE
T ss_pred CCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEE
Confidence 4578887765322223346677889999999998753
No 99
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=25.32 E-value=71 Score=22.63 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=25.4
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEeccccC
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~KsEG~IPisEls 206 (343)
-.+++||+|. |+..+++..+.-.-.+..|++|.+=+.
T Consensus 24 Lsf~~Gd~i~--v~~~~~~Ww~g~~~~g~~G~~P~~yv~ 60 (70)
T 2vkn_A 24 ISFEQNEILQ--VSDIEGRWWKARRANGETGIIPSNYVQ 60 (70)
T ss_dssp CCBCTTCEEE--EECTTSSEEEEECTTSCEEEEEGGGEE
T ss_pred ccCCCCCEEE--EEEcCCCeEEEEECCCCEEEEehHHEE
Confidence 4578999994 666666666664224568999986553
No 100
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.59 E-value=1e+02 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=26.6
Q ss_pred CcEEEEEEEEecC-eeEEEECC-eEEEEeCCcccc
Q 019315 298 EPIEVKFTEWNTG-GLLTRIEG-LRAFLPKAELLS 330 (343)
Q Consensus 298 ~~VeGkVve~nKG-GliVeIeG-lrgFIP~SQl~~ 330 (343)
...+|+|+.++|| |+|..-+| -+.|++.|.|..
T Consensus 17 ~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~ 51 (89)
T 1wfq_A 17 LRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNG 51 (89)
T ss_dssp CEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSS
T ss_pred cccceEEEEEeCCeeEEecCCCCccEEEEhHHhhC
Confidence 5678999999875 78776554 899999999864
No 101
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=24.34 E-value=62 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=21.3
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~ 329 (343)
+.|++|.+.=.....+=+.++..|-+|++|.+.+.
T Consensus 25 ~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~ 59 (63)
T 3eg3_A 25 TKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59 (63)
T ss_dssp CTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEE
T ss_pred CCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeE
Confidence 35776664322212223556778889999998764
No 102
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=24.07 E-value=1.3e+02 Score=20.97 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCCCCCCEEEEEEEEE-eCCeEEEEeCCCeeEEEeccccC
Q 019315 168 YEPKPGDFVIGVVVSG-NENKLDVNVGADLLGTMLTKEVL 206 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI-~~~gv~VDIG~KsEG~IPisEls 206 (343)
-.+++||+|. |+.. +++........+..|++|.+=+.
T Consensus 23 Ls~~~Gd~i~--v~~~~~~~Ww~g~~~~g~~G~~P~~yv~ 60 (69)
T 4esr_A 23 LTIHRGDIIR--VFFKDNEDWWYGSIGKGQEGYFPANHVA 60 (69)
T ss_dssp CCBCTTCEEE--EEEECSSSEEEEEEETTEEEEEEGGGEE
T ss_pred CCCCCCCEEE--EEEecCCCeEEEEeCCCCEEEEchHHeE
Confidence 4678999997 4444 45666676656678999986554
No 103
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.57 E-value=70 Score=23.21 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.7
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
+.|++|.+.- ....+....+..|-+|++|.+.+..
T Consensus 27 ~~Gd~i~v~~-~~~~~Ww~g~~~g~~G~~P~~yv~~ 61 (78)
T 2yuo_A 27 RKNDIITIIS-QKDEHCWVGELNGLRGWFPAKFVEV 61 (78)
T ss_dssp CTTCEEEEEE-CCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred CCCCEEEEEE-ecCCCEEEEEECCCEEEEehHHEEE
Confidence 4677776542 2345567778889999999998753
No 104
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=22.86 E-value=63 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.3
Q ss_pred EEEEEecCeeEEEECCeEEEEeCCcccc
Q 019315 303 KFTEWNTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 303 kVve~nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
.|++....|++|.-++--=|||+|+|+.
T Consensus 16 dIvs~~~~gyvv~HGdH~HyIpk~~Ls~ 43 (55)
T 2cs7_A 16 DIIEDTGDAYIVPHGDHYHYIPKNELSA 43 (55)
T ss_dssp GCCEECSSEEEEEETTEEEEEEGGGSCH
T ss_pred HheecCCCeEEEecCCeEEEeEhHHCCH
Confidence 3788899999999988888999999863
No 105
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=22.21 E-value=1.1e+02 Score=21.00 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=22.6
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl~ 329 (343)
+.|++|.+.-.. ..+=..++..|-+|++|.+.+.
T Consensus 24 ~~Gd~i~v~~~~-~~~W~~g~~~g~~G~~P~~yv~ 57 (60)
T 1w70_A 24 KAGDVIFLLSRI-NKDWLEGTVRGATGIFPLSFVK 57 (60)
T ss_dssp CTTCEEEEEEEC-SSSEEEEEETTEEEEEEGGGEE
T ss_pred CCCCEEEEEEeC-CCCeEEEEECCCEEEechHHEE
Confidence 467777654322 3444667788999999988653
No 106
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=22.19 E-value=47 Score=24.99 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=28.1
Q ss_pred CCCCCCCEEEE---EEEEEeCCeEEEEeCCCeeEEE
Q 019315 168 YEPKPGDFVIG---VVVSGNENKLDVNVGADLLGTM 200 (343)
Q Consensus 168 ~~~k~GdiVeG---~VVsI~~~gv~VDIG~KsEG~I 200 (343)
..|..||.+.| ++.+|-.|.|.++-++..|-++
T Consensus 31 ~~Y~vGd~i~g~~a~l~~V~~DrVIl~~~G~~E~L~ 66 (68)
T 3oss_C 31 QVYLQGERLDSHNAVIEEINRDHVMLRYQGKIERLS 66 (68)
T ss_dssp EEECTTCBCSSSSEEEEEECSSEEEEEETTEEEEEE
T ss_pred eEEECCCEeCCCCEEEEEEeCCEEEEecCCEEEEEE
Confidence 45778999988 8999999999999988777664
No 107
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=22.14 E-value=83 Score=21.41 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=21.5
Q ss_pred hCCCcEEEEEEEEe-cCeeEEEECCeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWN-TGGLLTRIEGLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~n-KGGliVeIeGlrgFIP~SQl~ 329 (343)
+.|++|.+ .+.. .+=..++..|-+|++|.+.+.
T Consensus 26 ~~Gd~i~v--~~~~~~~Ww~~~~~g~~G~~P~~yv~ 59 (62)
T 3ngp_A 26 KKGDILTL--LNSTNKDWWKIEVNGRQGFVPAAYLK 59 (62)
T ss_dssp CTTCEEEE--EECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred CCCCEEEE--eEecCCCeEEEEECCEEEEEEHHHEE
Confidence 35666654 3333 333566778999999998763
No 108
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=22.00 E-value=79 Score=21.13 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=21.1
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl 328 (343)
+.|++|.+.-..-..+=..++..|-+|++|.+.+
T Consensus 20 ~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv 53 (54)
T 2a28_A 20 DPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53 (54)
T ss_dssp CTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGB
T ss_pred CCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHc
Confidence 4567665432221134456777899999998765
No 109
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=21.89 E-value=47 Score=23.79 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=24.5
Q ss_pred CCCCCCCEEEEEEEEE-eCCeEEEEeCCCeeEEEeccc
Q 019315 168 YEPKPGDFVIGVVVSG-NENKLDVNVGADLLGTMLTKE 204 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI-~~~gv~VDIG~KsEG~IPisE 204 (343)
-.+++||+|+ |+.. +++..+.....+..|++|.+=
T Consensus 21 Ls~~~Gd~i~--v~~~~~~~Ww~g~~~~G~~G~fP~ny 56 (60)
T 2lx7_A 21 LRFAAGELIT--LLQVPDGGWWEGEKEDGLRGWFPASY 56 (60)
T ss_dssp CCCCTTCEEE--BSCCCTTSCEEEECTTSCEEEECGGG
T ss_pred ccCCCCCEEE--EeEecCCCeEEEEeCCCCEEEEcHHH
Confidence 3688999996 5554 455666766555789999753
No 110
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=21.83 E-value=1e+02 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=22.4
Q ss_pred hhCCCcEEEEEEEEecCe-eEEEECCeEEEEeCCcc
Q 019315 294 KQLNEPIEVKFTEWNTGG-LLTRIEGLRAFLPKAEL 328 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGG-liVeIeGlrgFIP~SQl 328 (343)
++.|++|. |.+....| ..++..|-+|++|.+.+
T Consensus 23 ~~~Gd~i~--v~~~~~~~Ww~g~~~g~~G~~P~~yv 56 (59)
T 2g6f_X 23 FSKGDVIH--VTRVEEGGWWEGTHNGRTGWFPSNYV 56 (59)
T ss_dssp BCTTCEEE--EEEECTTSEEEEEETTEEEEEEGGGE
T ss_pred CCCCCEEE--EEEecCCCEEEEEECCcEEEEeHHHE
Confidence 34678776 33443344 55677899999998865
No 111
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.26 E-value=1.2e+02 Score=22.05 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=23.9
Q ss_pred hCCCcEEEEEEEE-ecCeeEEEECCeEEEEeCCcccc
Q 019315 295 QLNEPIEVKFTEW-NTGGLLTRIEGLRAFLPKAELLS 330 (343)
Q Consensus 295 e~g~~VeGkVve~-nKGGliVeIeGlrgFIP~SQl~~ 330 (343)
+.|++|.+. +. ..+=..+++.|-+|++|.+.+..
T Consensus 37 ~~Gd~i~v~--~~~~~~Ww~g~~~g~~G~~P~~yv~~ 71 (79)
T 1x69_A 37 DPDDIITNI--EMIDDGWWRGVCKGRYGLFPANYVEL 71 (79)
T ss_dssp CTTCEEEEE--EECSSSEEEEEETTEEEEEETTSEEE
T ss_pred CCCCEEEEe--EecCCCeEEEEECCcEEEechHHEEE
Confidence 467877654 33 33446677889999999988753
No 112
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=20.55 E-value=1.8e+02 Score=19.78 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=22.9
Q ss_pred hCCCcEEEEEEEEecCeeEEEECCeEEEEeCCcc
Q 019315 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328 (343)
Q Consensus 295 e~g~~VeGkVve~nKGGliVeIeGlrgFIP~SQl 328 (343)
+.|++|.+.=. ...+=..++..|-+|++|.+.+
T Consensus 26 ~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv 58 (60)
T 2gnc_A 26 KKGASLLLYHR-ASEDWWEGRHNGIDGLVPHQYI 58 (60)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTEEEEEEGGGE
T ss_pred CCCCEEEEEEe-cCCCEEEEEECCeEEEEeHhhE
Confidence 46787754332 2455567788899999998865
No 113
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=20.49 E-value=1.3e+02 Score=20.76 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=23.7
Q ss_pred hhCCCcEEEEEEEEecCeeEEEE--CCeEEEEeCCccc
Q 019315 294 KQLNEPIEVKFTEWNTGGLLTRI--EGLRAFLPKAELL 329 (343)
Q Consensus 294 ~e~g~~VeGkVve~nKGGliVeI--eGlrgFIP~SQl~ 329 (343)
++.|++|.+.=.. .+=..++. .|-+|++|.+.+.
T Consensus 26 ~~~Gd~i~v~~~~--~~Ww~g~~~~~g~~G~~P~~yv~ 61 (65)
T 1w1f_A 26 FKKGEKMKVLEEH--GEWWKAKSLLTKKEGFIPSNYVA 61 (65)
T ss_dssp BCTTCEEEEEEEC--SSEEEEEETTTCCEEEEETTTEE
T ss_pred CCCCCEEEEEEcC--CCEEEEEECCCCCEEEEEhhHEE
Confidence 3467777654443 45566777 7899999998764
No 114
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=20.28 E-value=2e+02 Score=19.18 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=24.5
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEEEeCC-CeeEEEecccc
Q 019315 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEV 205 (343)
Q Consensus 168 ~~~k~GdiVeG~VVsI~~~gv~VDIG~-KsEG~IPisEl 205 (343)
-.+++||+|. .+-+.+++........ +..|++|.+=+
T Consensus 18 Ls~~~Gd~i~-v~~~~~~gW~~g~~~~~g~~G~~P~~yv 55 (59)
T 1yn8_A 18 LRLAEGDIVF-ISYKHGQGWLVAENESGSKTGLVPEEFV 55 (59)
T ss_dssp CCBCTTCEEE-EEEEEETTEEEEECTTSSCEEEEEGGGE
T ss_pred cCCCCCCEEE-EEEcCCCCeEEEEECCCCCEEEEehHHe
Confidence 4578999996 3334455567776643 57899997543
No 115
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=20.03 E-value=89 Score=21.05 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=21.6
Q ss_pred hCCCcEEEEEEEEec-CeeEEEECCeEEEEeCCccc
Q 019315 295 QLNEPIEVKFTEWNT-GGLLTRIEGLRAFLPKAELL 329 (343)
Q Consensus 295 e~g~~VeGkVve~nK-GGliVeIeGlrgFIP~SQl~ 329 (343)
+.|++|.+. +... +=..++..|-+|++|.+.+.
T Consensus 22 ~~Gd~i~v~--~~~~~~Ww~g~~~g~~G~~P~~yv~ 55 (58)
T 1sem_A 22 KRGDVITLI--NKDDPNWWEGQLNNRRGIFPSNYVC 55 (58)
T ss_dssp CTTCEEEEE--ECSSSSEEEEEETTEEEEEEGGGEE
T ss_pred CCCCEEEEE--EecCCCEEEEEECCcEEEechHHeE
Confidence 457766543 3333 44567778999999988763
Done!