BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019316
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 65 LKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQV 124
+KV M CEGC RKVRR ++G +GV V + K HKV V G DP KV+ R+ ++ ++V
Sbjct: 30 IKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGY-VDPNKVVARMSHRTGKKV 88
Query: 125 ELLSPIPKPTAAE 137
EL +P A
Sbjct: 89 ELWPYVPYDVVAH 101
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 153 KKEEVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYV 212
K++++ V +KV M CEGC ++++ + M+GV S + K +VTV G DP K+V +
Sbjct: 21 KRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARM 80
Query: 213 YKRTGK 218
RTGK
Sbjct: 81 SHRTGK 86
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=CCS1 PE=3 SV=1
Length = 238
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 164 VHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVI 222
V MHC C+ EI + + + GV+ PDL+ V V+G+ PP + TG+ A++
Sbjct: 14 VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGI-APPSSIVQALAATGRDAIL 71
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 62 EIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKG 104
E V MHC C ++ R L+ GV++V D + V V+G
Sbjct: 9 EATYAVPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRG 51
>sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=copA PE=3
SV=1
Length = 915
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 133 PTAAEEEKK-----AEEKAPPKPEEKKEEVIIVVLKVHMHCEGCSLEIKKRILRMEGVES 187
P A+ +EK+ AE + + E + + +++K M C C ++K +L +EGV+S
Sbjct: 144 PAASIDEKETDTPDAENSSNTEATEASSQTLSLLIK-GMTCASCVASVEKALLSVEGVQS 202
Query: 188 AEPDLKNSQVTVKGVFDPPK 207
A+ +L V+G+F P+
Sbjct: 203 AQVNLTEQSALVRGIFANPQ 222
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 23 EAAEKPQEKPAAA----EEKKPAPEESKDAKAAKEEQSPPPPKEIVLKVYMHCEGCARKV 78
EA ++ PAA+ E P E S + +A ++ +++K M C C V
Sbjct: 135 EAEQESTFAPAASIDEKETDTPDAENSSNTEA---TEASSQTLSLLIK-GMTCASCVASV 190
Query: 79 RRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELL 127
+ L EGV+ + +V+G A+P +L+ +Q + Q E+L
Sbjct: 191 EKALLSVEGVQSAQVNLTEQSALVRGIFANPQPLLNAIQSSGY-QAEIL 238
>sp|Q64430|ATP7A_MOUSE Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=3
Length = 1491
Score = 36.6 bits (83), Expect = 0.26, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 22/210 (10%)
Query: 10 AAEEKKPEEAKKEEAAEKPQEK-----PAAAEEKKPAPEESKDAKAAKEEQSPPPPKEIV 64
A E KK EA A K Q K E K P +S + K P +
Sbjct: 222 AEEIKKQIEAVGFPAFIKKQPKYLKLGAIDVERLKNTPVKSSEGSQQKSPSYPSDSTTMF 281
Query: 65 LKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQV 124
MHC+ C + L + V ++ + IVK + V + RK+ +
Sbjct: 282 TIEGMHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVKYNAS---LVTPEMLRKA---I 335
Query: 125 ELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEVIIV--------VLKVH-MHCEGCSLEI 175
E +SP + E ++ +P +K + IV V+ ++ M C C I
Sbjct: 336 EAISPGQYRVSIASEVESTASSPSSSSLQKMPLNIVSQPLTQEAVININGMTCNSCVQSI 395
Query: 176 KKRILRMEGVESAEPDLKNSQVTVKGVFDP 205
+ I + GV+S L NS T++ FDP
Sbjct: 396 EGVISKKPGVKSIHVSLANSTGTIE--FDP 423
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 124 VELLSPIPKPTAAEEEKKA--EEKAPPKPEEKKEEVIIVVLKVH-MHCEGCSLEIKKRIL 180
VEL+ + +E+K EE + P+ E +++ +KV M C C+ I+ ++
Sbjct: 140 VELVPDLSLDMGTQEKKSGACEEHSTPQAGE-----VMLKMKVEGMTCHSCTSTIEGKVG 194
Query: 181 RMEGVESAEPDLKNSQVTVKGVFDP 205
+++GV+ + L N + T+ VF P
Sbjct: 195 KLQGVQRIKVSLDNQEATI--VFQP 217
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1
SV=1
Length = 1492
Score = 35.0 bits (79), Expect = 0.90, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 32/215 (14%)
Query: 10 AAEEKKPEEAKKEEAAEKPQEK-----PAAAEEKKPAPEESKDAKAAKEEQSPPPPKEIV 64
A E KK EA A K Q K E K P +S + +++SP P +
Sbjct: 222 AEEIKKQIEAVGFPAFIKKQPKYLKLGAIDVERLKSTPVKSSEGS---QQKSPAYPSDSA 278
Query: 65 LKVY---MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSH 121
+ MHC+ C + L + V ++ + IVK + V + RK+
Sbjct: 279 ITFTIDGMHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVKYNAS---LVTPEILRKA- 334
Query: 122 RQVELLSPIPKPTAAEEEKKAE---------EKAPPK--PEEKKEEVIIVVLKVHMHCEG 170
+E +SP + E ++ +K P + +EV+I + M C
Sbjct: 335 --IEAVSPGQYRVSISSEVESPTSSPSSSSLQKMPLNLVSQPLTQEVVINI--NGMTCNS 390
Query: 171 CSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDP 205
C I+ I + GV+S L NS T++ +DP
Sbjct: 391 CVQSIEGVISKKPGVKSIHVSLTNSTGTIE--YDP 423
Score = 31.6 bits (70), Expect = 9.2, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 124 VELLSPIPKPTAAEEEKK--AEEKAPPKPEEKKEEVIIVVLKVH-MHCEGCSLEIKKRIL 180
VEL+ + +E+K +EE + P+ E +++ ++V M C C+ I+ ++
Sbjct: 140 VELVPDLSLDMGTQEKKSGTSEEHSTPQAGE-----VLLKMRVEGMTCHSCTSTIEGKVG 194
Query: 181 RMEGVESAEPDLKNSQVTVKGVFDP 205
+++GV+ + L N + T+ V+ P
Sbjct: 195 KLQGVQRIKVSLDNQEATI--VYQP 217
>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2
OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1
Length = 847
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 9 PAAEEKKPEEAKKEEAAEKPQ-EKPAAA--EEKKPAPEESKDAKAAKEEQSPPPPK 61
P E+ KPEE+ K E + P+ KP + E + P P++ DA K +SPPPPK
Sbjct: 472 PKPEQPKPEESPKPEQPQIPEPTKPVSPPNEAQGPTPDDPYDASPVKNRRSPPPPK 527
>sp|Q64ZR4|IF2_BACFR Translation initiation factor IF-2 OS=Bacteroides fragilis (strain
YCH46) GN=infB PE=3 SV=1
Length = 1015
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 113 LDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEVII 159
LD++ RK ++ P P+P AAEE+K AEE P E KKEEV +
Sbjct: 116 LDKLNRKVEKEPVKEEPKPQPVAAEEKKVAEEVKPVVNEVKKEEVTV 162
>sp|Q5LIN1|IF2_BACFN Translation initiation factor IF-2 OS=Bacteroides fragilis (strain
ATCC 25285 / NCTC 9343) GN=infB PE=3 SV=1
Length = 1015
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 113 LDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEVII 159
LD++ RK ++ P P+P AAEE+K AEE P E KKEEV +
Sbjct: 116 LDKLNRKVEKEPVKEEPKPQPVAAEEKKVAEEVKPVVNEVKKEEVTV 162
>sp|B8FCY5|IF2_DESAA Translation initiation factor IF-2 OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=infB PE=3 SV=1
Length = 1040
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 13 EKKPE---EAKKEEAA-EKPQEKPAAAEEKKPAPEESKDAKAAKEEQSP 57
E KPE EAK EE A EKP E+P A EE+K APE+SK+ A+E P
Sbjct: 232 EAKPEIKAEAKAEEGAPEKPAEEPKAKEEQKAAPEDSKEEPKAEEPAQP 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,192,218
Number of Sequences: 539616
Number of extensions: 7262111
Number of successful extensions: 95417
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 1370
Number of HSP's that attempted gapping in prelim test: 64451
Number of HSP's gapped (non-prelim): 21888
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (28.1 bits)