Query 019316
Match_columns 343
No_of_seqs 361 out of 2014
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 99.3 3E-11 6.5E-16 127.2 13.1 140 62-225 70-216 (951)
2 PRK10671 copA copper exporting 99.3 4.3E-11 9.3E-16 129.5 14.4 157 61-222 3-163 (834)
3 PF00403 HMA: Heavy-metal-asso 99.2 4.6E-11 1E-15 87.7 7.6 58 161-219 1-62 (62)
4 KOG0207 Cation transport ATPas 99.2 1.6E-10 3.4E-15 121.8 11.0 134 69-227 3-141 (951)
5 COG2608 CopZ Copper chaperone 99.0 1.9E-09 4.2E-14 81.8 8.0 64 159-223 3-70 (71)
6 PF00403 HMA: Heavy-metal-asso 99.0 1.7E-09 3.7E-14 79.3 6.2 59 64-123 1-62 (62)
7 KOG1603 Copper chaperone [Inor 98.9 9.7E-09 2.1E-13 78.4 8.5 67 157-224 4-71 (73)
8 COG2608 CopZ Copper chaperone 98.8 8E-09 1.7E-13 78.4 6.7 66 60-126 1-69 (71)
9 KOG1603 Copper chaperone [Inor 98.6 1.4E-07 3.1E-12 71.9 6.6 66 59-125 3-68 (73)
10 KOG4656 Copper chaperone for s 98.5 3.5E-07 7.7E-12 81.9 7.7 70 158-228 7-76 (247)
11 KOG4656 Copper chaperone for s 98.2 2.9E-06 6.2E-11 76.1 6.7 69 59-129 5-73 (247)
12 PLN02957 copper, zinc superoxi 97.9 5E-05 1.1E-09 70.8 9.3 70 158-228 6-75 (238)
13 PRK10671 copA copper exporting 97.7 6.4E-05 1.4E-09 81.9 7.1 64 158-224 3-67 (834)
14 COG2217 ZntA Cation transport 97.6 0.00012 2.6E-09 78.1 6.9 62 159-222 3-69 (713)
15 TIGR00003 copper ion binding p 97.3 0.0015 3.2E-08 44.9 7.6 61 159-220 3-67 (68)
16 PLN02957 copper, zinc superoxi 97.2 0.0013 2.9E-08 61.3 7.6 68 60-129 5-72 (238)
17 COG2217 ZntA Cation transport 97.1 0.00094 2E-08 71.3 6.2 64 61-126 2-69 (713)
18 TIGR00003 copper ion binding p 96.7 0.011 2.4E-07 40.3 7.2 62 61-123 2-66 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.3 0.041 8.8E-07 59.5 7.0 63 158-221 53-117 (741)
20 PRK11033 zntA zinc/cadmium/mer 93.8 0.14 3.1E-06 55.4 7.0 68 58-126 50-118 (741)
21 TIGR02052 MerP mercuric transp 88.7 3.7 8.1E-05 30.4 8.3 62 159-221 24-89 (92)
22 cd00371 HMA Heavy-metal-associ 83.9 7 0.00015 23.6 6.5 50 163-212 3-55 (63)
23 COG1888 Uncharacterized protei 78.6 12 0.00026 29.7 7.0 67 157-224 5-80 (97)
24 PRK13748 putative mercuric red 77.3 8.8 0.00019 39.8 7.9 64 161-225 3-69 (561)
25 TIGR02052 MerP mercuric transp 65.9 19 0.0004 26.5 5.5 42 62-103 24-66 (92)
26 PF01206 TusA: Sulfurtransfera 62.8 24 0.00051 25.8 5.4 53 161-223 2-57 (70)
27 PF02680 DUF211: Uncharacteriz 61.0 69 0.0015 25.7 7.9 66 157-224 4-78 (95)
28 cd00371 HMA Heavy-metal-associ 57.6 30 0.00066 20.5 4.7 37 67-103 4-41 (63)
29 COG2177 FtsX Cell division pro 55.9 68 0.0015 31.0 8.6 83 72-192 71-153 (297)
30 COG1888 Uncharacterized protei 51.7 47 0.001 26.5 5.4 68 59-127 4-79 (97)
31 PF01883 DUF59: Domain of unkn 50.1 26 0.00056 25.8 3.8 32 159-190 35-72 (72)
32 PRK13748 putative mercuric red 46.8 57 0.0012 33.8 7.0 62 64-126 3-66 (561)
33 PF01883 DUF59: Domain of unkn 45.7 29 0.00064 25.5 3.5 32 62-93 35-72 (72)
34 PRK11018 hypothetical protein; 41.5 1.3E+02 0.0028 22.8 6.6 55 159-223 8-65 (78)
35 cd03421 SirA_like_N SirA_like_ 41.2 88 0.0019 22.6 5.4 51 162-223 2-55 (67)
36 PF02680 DUF211: Uncharacteriz 38.5 73 0.0016 25.6 4.8 65 60-126 4-76 (95)
37 PF14437 MafB19-deam: MafB19-l 35.8 67 0.0015 27.8 4.5 41 158-199 100-142 (146)
38 PRK14054 methionine sulfoxide 35.2 75 0.0016 28.2 4.9 44 170-213 11-76 (172)
39 cd03420 SirA_RHOD_Pry_redox Si 30.8 1.8E+02 0.0039 21.3 5.7 53 162-224 2-57 (69)
40 COG2151 PaaD Predicted metal-s 30.8 1.4E+02 0.0031 24.6 5.5 21 172-192 69-89 (111)
41 TIGR02945 SUF_assoc FeS assemb 30.6 1.2E+02 0.0027 23.7 5.1 21 173-193 58-78 (99)
42 PF13732 DUF4162: Domain of un 30.6 1.5E+02 0.0033 22.0 5.4 44 179-225 26-71 (84)
43 PRK10553 assembly protein for 28.2 1.8E+02 0.0039 22.8 5.5 43 170-212 17-60 (87)
44 cd03423 SirA SirA (also known 27.6 2.2E+02 0.0049 20.7 5.7 53 162-224 2-57 (69)
45 PRK11152 ilvM acetolactate syn 27.1 2.2E+02 0.0048 21.7 5.7 59 109-190 17-75 (76)
46 PF03927 NapD: NapD protein; 26.7 2.4E+02 0.0051 21.5 5.9 43 170-213 15-58 (79)
47 cd00291 SirA_YedF_YeeD SirA, Y 26.4 2.2E+02 0.0047 20.3 5.5 52 162-223 2-56 (69)
48 cd03422 YedF YedF is a bacteri 25.1 2.7E+02 0.0059 20.3 5.8 52 162-223 2-56 (69)
49 PRK14054 methionine sulfoxide 25.0 1.5E+02 0.0032 26.4 5.0 28 72-99 10-37 (172)
50 PF14437 MafB19-deam: MafB19-l 23.9 1.3E+02 0.0028 26.1 4.3 41 60-101 99-141 (146)
51 COG0841 AcrB Cation/multidrug 23.5 6.7E+02 0.014 28.6 10.9 122 74-213 62-207 (1009)
52 PRK00058 methionine sulfoxide 23.3 1.8E+02 0.0039 26.8 5.3 34 60-98 45-78 (213)
53 COG0425 SirA Predicted redox p 23.2 3.4E+02 0.0074 20.6 6.9 53 159-220 5-60 (78)
54 PRK05528 methionine sulfoxide 23.0 1.8E+02 0.0039 25.4 5.1 44 170-213 9-69 (156)
55 TIGR03406 FeS_long_SufT probab 22.8 1.1E+02 0.0023 27.3 3.7 33 160-192 115-153 (174)
56 PF08777 RRM_3: RNA binding mo 22.6 2.9E+02 0.0062 22.2 5.9 54 160-213 2-58 (105)
57 PF14492 EFG_II: Elongation Fa 22.5 3.2E+02 0.0069 20.3 5.8 53 169-221 15-72 (75)
58 TIGR03406 FeS_long_SufT probab 21.2 97 0.0021 27.5 3.1 34 62-95 114-153 (174)
59 cd04888 ACT_PheB-BS C-terminal 21.1 2.2E+02 0.0048 20.4 4.6 32 159-190 42-74 (76)
60 PRK04435 hypothetical protein; 20.7 3.9E+02 0.0084 22.8 6.7 32 159-190 111-143 (147)
61 PRK13014 methionine sulfoxide 20.2 1.5E+02 0.0032 26.8 4.0 26 171-196 17-42 (186)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.28 E-value=3e-11 Score=127.18 Aligned_cols=140 Identities=23% Similarity=0.364 Sum_probs=119.1
Q ss_pred eEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeecc--cCChhhHHhhhhhcccccccccCCCCCCCchhh
Q 019316 62 EIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE--KADPLKVLDRVQRKSHRQVELLSPIPKPTAAEE 138 (343)
Q Consensus 62 ~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~--~~d~~~I~~~I~k~~G~~a~lis~~~~~~~~~~ 138 (343)
...|+|. |+|.+|+++|++.|+.+.||.++.+.+......+..+ ...+..+.+.|++ +||.+.+++.....
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~-~gf~a~~i~~~~~~----- 143 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIED-LGFSAELIESVNGN----- 143 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHh-cCccceehhcccCC-----
Confidence 6789999 9999999999999999999999999999999877543 3578899999996 69998876543210
Q ss_pred hhhhhcCCCCCCCcccceeEEEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec---cCChHHHHHHHHH
Q 019316 139 EKKAEEKAPPKPEEKKEEVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYK 214 (343)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~~~~~Lv~~I~k 214 (343)
....+.|.| ||.|.+|+.+|++.|.+++||.++++++.++++.|.. .+.+++|++.|.
T Consensus 144 -----------------~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie- 205 (951)
T KOG0207|consen 144 -----------------SNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE- 205 (951)
T ss_pred -----------------CCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-
Confidence 014689999 9999999999999999999999999999999999874 478999999994
Q ss_pred hcCCceEEeeC
Q 019316 215 RTGKHAVIVKQ 225 (343)
Q Consensus 215 k~G~~a~iv~~ 225 (343)
.+||.+.+...
T Consensus 206 ~~~~~~~~~~~ 216 (951)
T KOG0207|consen 206 ETGFEASVRPY 216 (951)
T ss_pred hhcccceeeec
Confidence 89998776553
No 2
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.27 E-value=4.3e-11 Score=129.52 Aligned_cols=157 Identities=19% Similarity=0.326 Sum_probs=112.1
Q ss_pred ceEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeecccCChhhHHhhhhhcccccccccCCCCCCCc--hh
Q 019316 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTA--AE 137 (343)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~k~~G~~a~lis~~~~~~~--~~ 137 (343)
++++|.|. |+|++|+.+|+++|.+++||.++.+++. +.++.... +...|...|++ +||.+.+.++...+.. ..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~-~~~~i~~~i~~-~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTA-SAEALIETIKQ-AGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecC-CHHHHHHHHHh-cCCccccccccccccccccc
Confidence 56899999 9999999999999999999999999995 44454444 78899999986 5999886542211100 00
Q ss_pred hhhhhhcCCCCCCCcccceeEEEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEeccCChHHHHHHHHHhc
Q 019316 138 EEKKAEEKAPPKPEEKKEEVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRT 216 (343)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~~~~~Lv~~I~kk~ 216 (343)
..+..................++.|.| ||+|.+|+..|++.|..++||.++.+++.++++.|.+..+...|...+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~ 157 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KA 157 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hc
Confidence 000000000000000000123567889 9999999999999999999999999999999988876667888888885 79
Q ss_pred CCceEE
Q 019316 217 GKHAVI 222 (343)
Q Consensus 217 G~~a~i 222 (343)
||.+.+
T Consensus 158 Gy~a~~ 163 (834)
T PRK10671 158 GYGAEA 163 (834)
T ss_pred CCCccc
Confidence 997653
No 3
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.21 E-value=4.6e-11 Score=87.70 Aligned_cols=58 Identities=31% Similarity=0.555 Sum_probs=53.2
Q ss_pred EEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEecc---CChHHHHHHHHHhcCCc
Q 019316 161 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV---FDPPKLVDYVYKRTGKH 219 (343)
Q Consensus 161 ~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~---~~~~~Lv~~I~kk~G~~ 219 (343)
+|.| ||+|.+|+++|+++|.+++||.++.+|+.+++++|.+. ++++.|...|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5889 99999999999999999999999999999999999965 45699999996 79984
No 4
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.6e-10 Score=121.83 Aligned_cols=134 Identities=22% Similarity=0.356 Sum_probs=114.8
Q ss_pred eechhhHHHHHHHHhCCCCcceeeecccCceEEeecc-cCChhhHHhhhhhcccccccccCCCCCCCchhhhhhhhcCCC
Q 019316 69 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE-KADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAP 147 (343)
Q Consensus 69 M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~-~~d~~~I~~~I~k~~G~~a~lis~~~~~~~~~~~~~~~~~~~ 147 (343)
|+|..|++.|+.++++.+||.++.+++.+++.+|..+ ..+++.|.++|.+ +||.+.+++....
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~~--------------- 66 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSEI--------------- 66 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCcc---------------
Confidence 9999999999999999999999999999999777543 2489999999987 5999987654321
Q ss_pred CCCCcccceeEEEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec---cCChHHHHHHHHHhcCCceEEe
Q 019316 148 PKPEEKKEEVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 148 ~~~~~~~~~~~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
...+-.|+| ||+|.+|++.|++.|+++.||.++.+.+......|.. .++++.+...+. +.||.+.++
T Consensus 67 --------~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i 137 (951)
T KOG0207|consen 67 --------TASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELI 137 (951)
T ss_pred --------ccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceeh
Confidence 123678999 9999999999999999999999999999999999873 478899999996 899999877
Q ss_pred eCCC
Q 019316 224 KQEP 227 (343)
Q Consensus 224 ~~~~ 227 (343)
....
T Consensus 138 ~~~~ 141 (951)
T KOG0207|consen 138 ESVN 141 (951)
T ss_pred hccc
Confidence 5544
No 5
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.9e-09 Score=81.83 Aligned_cols=64 Identities=25% Similarity=0.426 Sum_probs=57.0
Q ss_pred EEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--c-cCChHHHHHHHHHhcCCceEEe
Q 019316 159 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--G-VFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 159 ~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g-~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
...|+| ||+|.+|+..|+++|..++||.++.+|+..+++.|+ + .++.+.|+..|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 578999 999999999999999999999999999999777776 4 479999999995 899987653
No 6
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.95 E-value=1.7e-09 Score=79.30 Aligned_cols=59 Identities=32% Similarity=0.574 Sum_probs=52.6
Q ss_pred EEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeeccc--CChhhHHhhhhhccccc
Q 019316 64 VLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQ 123 (343)
Q Consensus 64 ~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~--~d~~~I~~~I~k~~G~~ 123 (343)
+|.|. |+|.+|+++|+++|.+++||.++.+|+.+++++|.++. +++..|...|++ +||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCcC
Confidence 58898 99999999999999999999999999999999998654 356899999987 5984
No 7
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.89 E-value=9.7e-09 Score=78.37 Aligned_cols=67 Identities=48% Similarity=0.800 Sum_probs=60.1
Q ss_pred eEEEEEeecccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEeccCChHHHHHHHHHhcC-CceEEee
Q 019316 157 VIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTG-KHAVIVK 224 (343)
Q Consensus 157 ~~~v~l~VGM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~~~~~Lv~~I~kk~G-~~a~iv~ 224 (343)
....++.++|||.+|..+|.+.|..+.||.++.+|...++++|.|.+++..|+..|. +.| ..+.+|.
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~-k~~~k~~~~~~ 71 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLK-KTGGKRAELWK 71 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHH-hcCCCceEEec
Confidence 346788889999999999999999999999999999999999999999999999997 466 6666664
No 8
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.84 E-value=8e-09 Score=78.44 Aligned_cols=66 Identities=26% Similarity=0.420 Sum_probs=55.5
Q ss_pred CceEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEe--ecccCChhhHHhhhhhcccccccc
Q 019316 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIV--KGEKADPLKVLDRVQRKSHRQVEL 126 (343)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V--~~~~~d~~~I~~~I~k~~G~~a~l 126 (343)
|....|+|. |+|.+|+.+|+++|..++||.++.+++..+++.| ++..++..+|+.+|.. +||.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~-aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED-AGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH-cCCCeee
Confidence 356789999 9999999999999999999999999999966554 4433488999999987 4997653
No 9
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.4e-07 Score=71.90 Aligned_cols=66 Identities=52% Similarity=0.883 Sum_probs=57.7
Q ss_pred CCceEEEEEeeechhhHHHHHHHHhCCCCcceeeecccCceEEeecccCChhhHHhhhhhccccccc
Q 019316 59 PPKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 125 (343)
Q Consensus 59 ~~~~v~l~V~M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~k~~G~~a~ 125 (343)
.++..++.+.|||.+|...|.+.|+.+.||.++.+|...++++|.+.. ++..|+..|++..+..+.
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~-~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNV-DPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEec-CHHHHHHHHHhcCCCceE
Confidence 456788888899999999999999999999999999999999999986 999999999874225443
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.50 E-value=3.5e-07 Score=81.85 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=64.6
Q ss_pred EEEEEeecccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEeccCChHHHHHHHHHhcCCceEEeeCCCC
Q 019316 158 IIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPE 228 (343)
Q Consensus 158 ~~v~l~VGM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~~~~~Lv~~I~kk~G~~a~iv~~~~~ 228 (343)
..++|.|.|+|.+|++.|+..|..++||.+|.||+..+.|.|.+...+..|.+.|+ .+|.+|.+...+.+
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGKP 76 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCch
Confidence 46789999999999999999999999999999999999999999999999999996 89999998877553
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.22 E-value=2.9e-06 Score=76.12 Aligned_cols=69 Identities=28% Similarity=0.491 Sum_probs=61.1
Q ss_pred CCceEEEEEeeechhhHHHHHHHHhCCCCcceeeecccCceEEeecccCChhhHHhhhhhcccccccccCC
Q 019316 59 PPKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSP 129 (343)
Q Consensus 59 ~~~~v~l~V~M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~k~~G~~a~lis~ 129 (343)
....+.|.|.|||.+|++.|+..|..++||.+|.+++..+.|.|.+.. .+..|...|+. ||.++.+..-
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~-p~s~i~~~le~-tGr~Avl~G~ 73 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSV-PPSEIQNTLEN-TGRDAVLRGA 73 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccC-ChHHHHHHHHh-hChheEEecC
Confidence 345678999999999999999999999999999999999999998876 88999999985 7998876543
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=97.93 E-value=5e-05 Score=70.85 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=62.0
Q ss_pred EEEEEeecccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEeccCChHHHHHHHHHhcCCceEEeeCCCC
Q 019316 158 IIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPE 228 (343)
Q Consensus 158 ~~v~l~VGM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~~~~~Lv~~I~kk~G~~a~iv~~~~~ 228 (343)
+++.|.|+|+|.+|+..|++.|..++||.++.+|+..++++|.+......|+..|. ++||.+.++....+
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDP 75 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCc
Confidence 45668889999999999999999999999999999999999987678888999995 89999988877654
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.71 E-value=6.4e-05 Score=81.88 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=56.4
Q ss_pred EEEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEeccCChHHHHHHHHHhcCCceEEee
Q 019316 158 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVK 224 (343)
Q Consensus 158 ~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~~~~~Lv~~I~kk~G~~a~iv~ 224 (343)
.+++|.| ||+|.+|+.+|+++|.+++||.++.+|+ ++.+|++..+.+.|...|. ++||.+.+..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSI--TEAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEee--eEEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 3688999 9999999999999999999999999999 4566666678899999995 8999988764
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00012 Score=78.05 Aligned_cols=62 Identities=31% Similarity=0.470 Sum_probs=55.1
Q ss_pred EEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEecc---CC-hHHHHHHHHHhcCCceEE
Q 019316 159 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV---FD-PPKLVDYVYKRTGKHAVI 222 (343)
Q Consensus 159 ~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~---~~-~~~Lv~~I~kk~G~~a~i 222 (343)
+..|.| ||+|.+|+++|+ +|.+++||..+.+|+.+++++|... .+ .+.+...++ ..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 468999 999999999999 9999999999999999999999742 44 688999995 89998865
No 15
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.32 E-value=0.0015 Score=44.90 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=50.2
Q ss_pred EEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec---cCChHHHHHHHHHhcCCce
Q 019316 159 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHA 220 (343)
Q Consensus 159 ~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~~~~~Lv~~I~kk~G~~a 220 (343)
+..|.| ||+|.+|...|...+..+.++..+.+++....+.|.. ..+...+...+. ..||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 356899 9999999999999999999999999999999888873 246667777774 678753
No 16
>PLN02957 copper, zinc superoxide dismutase
Probab=97.15 E-value=0.0013 Score=61.28 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=56.9
Q ss_pred CceEEEEEeeechhhHHHHHHHHhCCCCcceeeecccCceEEeecccCChhhHHhhhhhcccccccccCC
Q 019316 60 PKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSP 129 (343)
Q Consensus 60 ~~~v~l~V~M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~k~~G~~a~lis~ 129 (343)
...+.|.+.|+|.+|+..|+..|..++||.++.+++..+++.|.... ....|+..|+. +||.+.++..
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~-~~~~I~~aIe~-~Gy~a~~~~~ 72 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSS-PVKAMTAALEQ-TGRKARLIGQ 72 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecC-CHHHHHHHHHH-cCCcEEEecC
Confidence 34566777799999999999999999999999999999999987654 77888888886 5998876543
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.00094 Score=71.31 Aligned_cols=64 Identities=27% Similarity=0.503 Sum_probs=54.1
Q ss_pred ceEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeeccc--CC-hhhHHhhhhhcccccccc
Q 019316 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--AD-PLKVLDRVQRKSHRQVEL 126 (343)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~--~d-~~~I~~~I~k~~G~~a~l 126 (343)
.++.|.|. |||++|+++|+ +|++++||..+.+|+.++++.|..+. .+ ...+...+.. .||.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~-~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEK-AGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHh-cCccccc
Confidence 35789999 99999999999 99999999999999999999886542 24 6788888886 5997653
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.66 E-value=0.011 Score=40.35 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=47.1
Q ss_pred ceEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeecc--cCChhhHHhhhhhccccc
Q 019316 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE--KADPLKVLDRVQRKSHRQ 123 (343)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~--~~d~~~I~~~I~k~~G~~ 123 (343)
.++.+.|. |+|..|+..|+..+....++..+.+++....+.+... ..+...+...+.. .||.
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 66 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILD-AGYE 66 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHH-cCCC
Confidence 45678999 9999999999999999999999999999888777542 1244555555543 3664
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.26 E-value=0.041 Score=59.48 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=51.2
Q ss_pred EEEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEecc-CChHHHHHHHHHhcCCceE
Q 019316 158 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV-FDPPKLVDYVYKRTGKHAV 221 (343)
Q Consensus 158 ~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~-~~~~~Lv~~I~kk~G~~a~ 221 (343)
.++.|.| ||+|.+|+..|+..|..++||.++.+++.+.++.|... .....+...+. .+||.+.
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~ 117 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLR 117 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcccccc
Confidence 4567889 99999999999999999999999999999998887632 11256677774 6898764
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=93.81 E-value=0.14 Score=55.37 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=52.4
Q ss_pred CCCceEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeecccCChhhHHhhhhhcccccccc
Q 019316 58 PPPKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVEL 126 (343)
Q Consensus 58 ~~~~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~k~~G~~a~l 126 (343)
....++.+.+. |+|.+|+..|+..|..++||.++.+++.+.++.+..+......+...++. +||.+..
T Consensus 50 ~~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~-~Gy~a~~ 118 (741)
T PRK11033 50 VSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQK-AGFSLRD 118 (741)
T ss_pred CCCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHh-ccccccc
Confidence 34556788899 99999999999999999999999999999887775432112556666665 5887643
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=88.75 E-value=3.7 Score=30.44 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=45.9
Q ss_pred EEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec---cCChHHHHHHHHHhcCCceE
Q 019316 159 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAV 221 (343)
Q Consensus 159 ~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~~~~~Lv~~I~kk~G~~a~ 221 (343)
.+.+.+ ++.|..|...+...+....|+....+++....+.+.. ..+...+...+. ..||.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 89 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSS 89 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeE
Confidence 345778 9999999999999999999998888888877765542 235555555553 5777654
No 22
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=83.89 E-value=7 Score=23.62 Aligned_cols=50 Identities=36% Similarity=0.635 Sum_probs=35.2
Q ss_pred ee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEecc--CChHHHHHHH
Q 019316 163 KV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV--FDPPKLVDYV 212 (343)
Q Consensus 163 ~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g~--~~~~~Lv~~I 212 (343)
.+ ++.|..|...+...+....|+....+++....+.+... .+...+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAI 55 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHH
Confidence 35 88999999999999988999887777777666555432 2444443444
No 23
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.65 E-value=12 Score=29.72 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=44.2
Q ss_pred eEEEEEee-cccCcchHHHHHHHHhccCCeeEEeeec-----C--CCeEEEec-cCChHHHHHHHHHhcCCceEEee
Q 019316 157 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDL-----K--NSQVTVKG-VFDPPKLVDYVYKRTGKHAVIVK 224 (343)
Q Consensus 157 ~~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~-----~--~~~vtV~g-~~~~~~Lv~~I~kk~G~~a~iv~ 224 (343)
.++++|.| --+-.--.-.+-..|+++.||..|++.+ . +-.++|.| +++.+.|...|. .+|..++.++
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSiD 80 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSID 80 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeehh
Confidence 45677777 3343334556667788888886665533 2 33445556 599999999995 7997766554
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=77.27 E-value=8.8 Score=39.80 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=48.7
Q ss_pred EEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec--cCChHHHHHHHHHhcCCceEEeeC
Q 019316 161 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG--VFDPPKLVDYVYKRTGKHAVIVKQ 225 (343)
Q Consensus 161 ~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~~~~~Lv~~I~kk~G~~a~iv~~ 225 (343)
.+.+ +|+|.+|...++..+..++++....+++..+.+.+.. ..+...+...+. ..|+.+.+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 4667 9999999999999999999999999999888766653 234555666663 67877655444
No 25
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=65.93 E-value=19 Score=26.49 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=33.5
Q ss_pred eEEEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEee
Q 019316 62 EIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 103 (343)
Q Consensus 62 ~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~ 103 (343)
.+.+.+. ++|..|...+...+....++....+++....+.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 4567788 99999999999999999988877777766665543
No 26
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=62.81 E-value=24 Score=25.83 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=37.4
Q ss_pred EEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceEEe
Q 019316 161 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 161 ~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
+|.+ |+.|+...-.+.++|..++.- ..+.|. ......+|...+. ..||.+..+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~-~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCE-ENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHH-HCCCEEEEE
Confidence 5778 999999999999999998432 344444 2355678888885 799875544
No 27
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=60.98 E-value=69 Score=25.72 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=43.5
Q ss_pred eEEEEEee-cccCcchHHHHHHHHhccCCeeEEeeec-----CCCeEE--Eec-cCChHHHHHHHHHhcCCceEEee
Q 019316 157 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDL-----KNSQVT--VKG-VFDPPKLVDYVYKRTGKHAVIVK 224 (343)
Q Consensus 157 ~~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~-----~~~~vt--V~g-~~~~~~Lv~~I~kk~G~~a~iv~ 224 (343)
.++++|.| --|-+ -.-.+-..|..++||..|++.+ .+..+. |.| .++.+.|...|. .+|-.++.+.
T Consensus 4 irRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSID 78 (95)
T PF02680_consen 4 IRRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSID 78 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEEE
T ss_pred eeEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEeee
Confidence 46788888 33444 4556778899999987776643 333333 446 499999999995 7987666554
No 28
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=57.56 E-value=30 Score=20.47 Aligned_cols=37 Identities=41% Similarity=0.697 Sum_probs=27.5
Q ss_pred Ee-eechhhHHHHHHHHhCCCCcceeeecccCceEEee
Q 019316 67 VY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 103 (343)
Q Consensus 67 V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~ 103 (343)
+. +.|..|...+...+....++....+++....+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 45 88999999999888888887666666655554443
No 29
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=55.86 E-value=68 Score=31.03 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHhCCCCcceeeecccCceEEeecccCChhhHHhhhhhcccccccccCCCCCCCchhhhhhhhcCCCCCCC
Q 019316 72 EGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPE 151 (343)
Q Consensus 72 ~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~k~~G~~a~lis~~~~~~~~~~~~~~~~~~~~~~~ 151 (343)
..|...++..|..++||.++++- +.++-...++...|+. ....... .|
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~-------------sre~~l~~L~~~lg~~-~~~~l~~--------------nP---- 118 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI-------------SREEALKELQPWLGFG-ALLMLDE--------------NP---- 118 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe-------------CHHHHHHHHHHHcCch-hhhcCCC--------------CC----
Confidence 88999999999999999988652 4455555555555764 1111100 01
Q ss_pred cccceeEEEEEeecccCcchHHHHHHHHhccCCeeEEeeec
Q 019316 152 EKKEEVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDL 192 (343)
Q Consensus 152 ~~~~~~~~v~l~VGM~C~~C~~kIek~L~kl~GV~sv~vd~ 192 (343)
-...+++++ +-+.-...+.+.|+.++||.+|+.+.
T Consensus 119 ----LP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~~ 153 (297)
T COG2177 119 ----LPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDDR 153 (297)
T ss_pred ----CCceEEEEe--CCCccHHHHHHHHHcCccceehhcch
Confidence 112344444 23778899999999999999887654
No 30
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.68 E-value=47 Score=26.47 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCceEEEEEe-eechhhHHHHHHHHhCCCCcceeeeccc-------CceEEeecccCChhhHHhhhhhccccccccc
Q 019316 59 PPKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCK-------THKVIVKGEKADPLKVLDRVQRKSHRQVELL 127 (343)
Q Consensus 59 ~~~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~-------~~kv~V~~~~~d~~~I~~~I~k~~G~~a~li 127 (343)
+..+++|.+. -+-.--.--+-..|.+++||..|.+.+. +-.++|.|..++...|...|+. +|..+..+
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~-~Gg~IHSi 79 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEE-LGGAIHSI 79 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHH-cCCeeeeh
Confidence 4456666666 4434444456677889999877665432 3336667766699999999987 48766544
No 31
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=50.05 E-value=26 Score=25.81 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEeecccCcch------HHHHHHHHhccCCeeEEee
Q 019316 159 IVVLKVHMHCEGC------SLEIKKRILRMEGVESAEP 190 (343)
Q Consensus 159 ~v~l~VGM~C~~C------~~kIek~L~kl~GV~sv~v 190 (343)
++.|.+-+..++| ...|+.+|..++||.+|.|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3445554444444 4678888999999998875
No 32
>PRK13748 putative mercuric reductase; Provisional
Probab=46.78 E-value=57 Score=33.78 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=42.7
Q ss_pred EEEEe-eechhhHHHHHHHHhCCCCcceeeecccCceEEeecc-cCChhhHHhhhhhcccccccc
Q 019316 64 VLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE-KADPLKVLDRVQRKSHRQVEL 126 (343)
Q Consensus 64 ~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~kv~V~~~-~~d~~~I~~~I~k~~G~~a~l 126 (343)
.+.+. |+|.+|...++..+..++++....+++....+.+... ..+...+...+.. +|+...+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~-~g~~~~~ 66 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAG-LGYRATL 66 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHH-cCCeeec
Confidence 35677 9999999999999999999888888888777655421 1133444444443 4665543
No 33
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=45.74 E-value=29 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEeeechhhH------HHHHHHHhCCCCcceeee
Q 019316 62 EIVLKVYMHCEGCA------RKVRRCLKGFEGVEDVIT 93 (343)
Q Consensus 62 ~v~l~V~M~C~~Ca------~kIe~~L~kl~GV~~v~v 93 (343)
++.|.+.+..++|. ..|+.+|..++||.+|.|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45566555555554 568888999999988764
No 34
>PRK11018 hypothetical protein; Provisional
Probab=41.51 E-value=1.3e+02 Score=22.76 Aligned_cols=55 Identities=7% Similarity=-0.046 Sum_probs=39.6
Q ss_pred EEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceEEe
Q 019316 159 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 159 ~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
..+|.+ |+.|+.-.-+.+++|.++..- ..+.|. .......|...+. ..||.+...
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~-~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDAR-NHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHH-HcCCEEEEE
Confidence 367888 999999999999999988522 233333 2355667888884 799987543
No 35
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.20 E-value=88 Score=22.60 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=35.2
Q ss_pred Eee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceEEe
Q 019316 162 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 162 l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
|.+ |+.|+.-.-.+.++| .+.. ++.+.|. .......|...+. ..||.+.+.
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~-~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAE-SRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHH-HcCCEEEEE
Confidence 456 999999999999999 6532 1233343 2345578888885 799988543
No 36
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=38.47 E-value=73 Score=25.55 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=41.9
Q ss_pred CceEEEEEe-eechhhHHHHHHHHhCCCCcceeeeccc-----Cce--EEeecccCChhhHHhhhhhcccccccc
Q 019316 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCK-----THK--VIVKGEKADPLKVLDRVQRKSHRQVEL 126 (343)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~-----~~k--v~V~~~~~d~~~I~~~I~k~~G~~a~l 126 (343)
..+++|-|. -|-. -.-.+-..|..++||..|.+.+. +.. ++|.|..++...|..+|+. +|-.+..
T Consensus 4 irRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~-~Gg~IHS 76 (95)
T PF02680_consen 4 IRRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEE-LGGVIHS 76 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHH-TT-EEEE
T ss_pred eeEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHH-cCCeEEe
Confidence 456677776 5333 34467788999999988765532 333 5556765699999999987 4765543
No 37
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=35.81 E-value=67 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=32.0
Q ss_pred EEEEEee-cccCcchHHHHHHHHhccCCeeEEeeecC-CCeEEE
Q 019316 158 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLK-NSQVTV 199 (343)
Q Consensus 158 ~~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~-~~~vtV 199 (343)
..+++.| --.|.+|..-|...+.++ |+.++.|... ++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 4578888 778999999999888887 8888888766 554443
No 38
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=35.17 E-value=75 Score=28.24 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=31.7
Q ss_pred chHHHHHHHHhccCCeeEEeeecCCCe-------------------EEEe---ccCChHHHHHHHH
Q 019316 170 GCSLEIKKRILRMEGVESAEPDLKNSQ-------------------VTVK---GVFDPPKLVDYVY 213 (343)
Q Consensus 170 ~C~~kIek~L~kl~GV~sv~vd~~~~~-------------------vtV~---g~~~~~~Lv~~I~ 213 (343)
+|-+-++..+.+++||.++.+-..++. |.|+ ..++.+.|++..-
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 466777888889999999999776654 4444 2367777777654
No 39
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=30.84 E-value=1.8e+02 Score=21.29 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=37.6
Q ss_pred Eee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceEEee
Q 019316 162 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIVK 224 (343)
Q Consensus 162 l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~iv~ 224 (343)
|.+ |+.|+.=.-++.++|.++.. ++.+.|. ......+|....+ ..||....+.
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~-~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCK-STGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHH-HcCCEEEEEE
Confidence 456 99999999999999998852 1333443 2355677888885 7999876443
No 40
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=30.80 E-value=1.4e+02 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.5
Q ss_pred HHHHHHHHhccCCeeEEeeec
Q 019316 172 SLEIKKRILRMEGVESAEPDL 192 (343)
Q Consensus 172 ~~kIek~L~kl~GV~sv~vd~ 192 (343)
...++.+|..++||.++.|++
T Consensus 69 ~~~v~~al~~~~~v~~v~V~l 89 (111)
T COG2151 69 ADQVEAALEEIPGVEDVEVEL 89 (111)
T ss_pred HHHHHHHHHhcCCcceEEEEE
Confidence 678899999999999988876
No 41
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=30.64 E-value=1.2e+02 Score=23.66 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHhccCCeeEEeeecC
Q 019316 173 LEIKKRILRMEGVESAEPDLK 193 (343)
Q Consensus 173 ~kIek~L~kl~GV~sv~vd~~ 193 (343)
..|+.+|..++|+.++.+++.
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE
Confidence 457788888999999988763
No 42
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=30.59 E-value=1.5e+02 Score=22.03 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=30.4
Q ss_pred HhccCCeeEEeeecCCCeEEE--eccCChHHHHHHHHHhcCCceEEeeC
Q 019316 179 ILRMEGVESAEPDLKNSQVTV--KGVFDPPKLVDYVYKRTGKHAVIVKQ 225 (343)
Q Consensus 179 L~kl~GV~sv~vd~~~~~vtV--~g~~~~~~Lv~~I~kk~G~~a~iv~~ 225 (343)
|..++||.++.... .+.+.| ....+...|+..|. ..|+ +.-+..
T Consensus 26 l~~~~~v~~v~~~~-~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~~f~~ 71 (84)
T PF13732_consen 26 LEELPGVESVEQDG-DGKLRIKLEDEETANELLQELI-EKGI-IRSFEE 71 (84)
T ss_pred HhhCCCeEEEEEeC-CcEEEEEECCcccHHHHHHHHH-hCCC-eeEEEE
Confidence 77889999987643 343444 45567788999996 6787 654443
No 43
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=28.23 E-value=1.8e+02 Score=22.85 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=30.6
Q ss_pred chHHHHHHHHhccCCeeEEeeecCCCeEEEe-ccCChHHHHHHH
Q 019316 170 GCSLEIKKRILRMEGVESAEPDLKNSQVTVK-GVFDPPKLVDYV 212 (343)
Q Consensus 170 ~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~-g~~~~~~Lv~~I 212 (343)
.=...+.+.|..++|+.-...|...+++.|+ -..+.+.+.+.|
T Consensus 17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i 60 (87)
T PRK10553 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTI 60 (87)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHH
Confidence 3477899999999999877777777888877 234445444444
No 44
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.58 E-value=2.2e+02 Score=20.70 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=37.2
Q ss_pred Eee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceEEee
Q 019316 162 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIVK 224 (343)
Q Consensus 162 l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~iv~ 224 (343)
|.+ |+.|+.=.-.+.++|.++.- ++.+.|. ......+|...++ ..||.+....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~~s~~di~~~~~-~~g~~~~~~~ 57 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDPSTTRDIPKFCT-FLGHELLAQE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCCchHHHHHHHHH-HcCCEEEEEE
Confidence 455 89999999999999988841 1233333 3356678888885 7999876443
No 45
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=27.13 E-value=2.2e+02 Score=21.69 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=40.9
Q ss_pred hhhHHhhhhhcccccccccCCCCCCCchhhhhhhhcCCCCCCCcccceeEEEEEeecccCcchHHHHHHHHhccCCeeEE
Q 019316 109 PLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEVIIVVLKVHMHCEGCSLEIKKRILRMEGVESA 188 (343)
Q Consensus 109 ~~~I~~~I~k~~G~~a~lis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~VGM~C~~C~~kIek~L~kl~GV~sv 188 (343)
+..++..++.. ||.+..++..+-. .....+++|-|+ -......|.+-|.++.+|..|
T Consensus 17 L~Ri~~lf~rR-GfnI~sl~v~~t~--------------------~~~~sriti~v~--~~~~i~ql~kQL~KL~dV~~V 73 (76)
T PRK11152 17 LERVLRVVRHR-GFQVCSMNMTQNT--------------------DAQNINIELTVA--SERPIDLLSSQLNKLVDVAHV 73 (76)
T ss_pred HHHHHHHHhcC-CeeeeeEEeeecC--------------------CCCEEEEEEEEC--CCchHHHHHHHHhcCcCeEEE
Confidence 45566666665 8988766543310 113456777774 588999999999999999988
Q ss_pred ee
Q 019316 189 EP 190 (343)
Q Consensus 189 ~v 190 (343)
.+
T Consensus 74 ~~ 75 (76)
T PRK11152 74 EI 75 (76)
T ss_pred EE
Confidence 75
No 46
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=26.74 E-value=2.4e+02 Score=21.51 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=30.6
Q ss_pred chHHHHHHHHhccCCeeEEeeecCCCeEEEe-ccCChHHHHHHHH
Q 019316 170 GCSLEIKKRILRMEGVESAEPDLKNSQVTVK-GVFDPPKLVDYVY 213 (343)
Q Consensus 170 ~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~-g~~~~~~Lv~~I~ 213 (343)
.=...+.++|..++|+.-...+.. +++.|+ -..+...+.+.+.
T Consensus 15 ~~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~ 58 (79)
T PF03927_consen 15 ERLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLID 58 (79)
T ss_dssp CCHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHH
Confidence 346789999999999976666666 777776 3355566666653
No 47
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.42 E-value=2.2e+02 Score=20.27 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=36.2
Q ss_pred Eee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec--cCChHHHHHHHHHhcCCceEEe
Q 019316 162 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG--VFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 162 l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
|.+ |+.|+.=.-.+.++|..+.. ++.+.|.. ......|...+. ..||.+..+
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~~~~~~i~~~~~-~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDPGAVEDIPAWAK-ETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCCcHHHHHHHHHH-HcCCEEEEE
Confidence 456 89999989999999988642 23344442 245778888885 799986544
No 48
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.07 E-value=2.7e+02 Score=20.33 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=36.8
Q ss_pred Eee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceEEe
Q 019316 162 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 223 (343)
Q Consensus 162 l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~iv 223 (343)
|.+ |+.|+.=.-+.+++|.++..- +.+.|. .......|...+. ..||.+...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~G---------~~l~V~~d~~~s~~ni~~~~~-~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKPG---------EILEVISDCPQSINNIPIDAR-NHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCC---------CEEEEEecCchHHHHHHHHHH-HcCCEEEEE
Confidence 345 899999999999999988521 233333 3456677888885 799987544
No 49
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=25.00 E-value=1.5e+02 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHhCCCCcceeeecccCce
Q 019316 72 EGCARKVRRCLKGFEGVEDVITDCKTHK 99 (343)
Q Consensus 72 ~~Ca~kIe~~L~kl~GV~~v~vdl~~~k 99 (343)
++|-+.++..+.+++||.++.+-.+.+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 7788888899999999999988877664
No 50
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=23.92 E-value=1.3e+02 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=31.3
Q ss_pred CceEEEEEe-eechhhHHHHHHHHhCCCCcceeeeccc-CceEE
Q 019316 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCK-THKVI 101 (343)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~kIe~~L~kl~GV~~v~vdl~-~~kv~ 101 (343)
...+++.|+ -.|..|..-|.....+ -|+.++.|... ++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKVY 141 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcEE
Confidence 456889999 9999999888776666 58888877766 55443
No 51
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=23.52 E-value=6.7e+02 Score=28.61 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=66.6
Q ss_pred hHHHHHHHHhCCCCcceeeecccCceEE--ee--cccCChh----hHHhhhhhcccccccccCCCCCCCchhhhhhhhcC
Q 019316 74 CARKVRRCLKGFEGVEDVITDCKTHKVI--VK--GEKADPL----KVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEK 145 (343)
Q Consensus 74 Ca~kIe~~L~kl~GV~~v~vdl~~~kv~--V~--~~~~d~~----~I~~~I~k~~G~~a~lis~~~~~~~~~~~~~~~~~ 145 (343)
-...|++.|+.++|+.++.-....+..+ |. ... +++ ++.++|... ... +-+....+.-
T Consensus 62 Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~-d~d~A~~~V~~kv~~~-~~~--LP~~~~~p~v---------- 127 (1009)
T COG0841 62 VTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGT-DPDTAAVQVQNKIQQA-ESR--LPSGVQQPGV---------- 127 (1009)
T ss_pred HhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCC-ChHHHHHHHHHHHHHH-Hhc--CCCccCCCce----------
Confidence 5667899999999998776555545533 32 222 444 444555432 111 1000000000
Q ss_pred CCCCCCcccceeEEEEEee-c--cc----CcchHHHHHHHHhccCCeeEEeeecC-CCeEEEe--------ccCChHHHH
Q 019316 146 APPKPEEKKEEVIIVVLKV-H--MH----CEGCSLEIKKRILRMEGVESAEPDLK-NSQVTVK--------GVFDPPKLV 209 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~l~V-G--M~----C~~C~~kIek~L~kl~GV~sv~vd~~-~~~vtV~--------g~~~~~~Lv 209 (343)
...+......+.|.+ + +. -..-...|+..|.+++||.+|++.-. ...+.|. ..+++.+|.
T Consensus 128 ----~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~ 203 (1009)
T COG0841 128 ----TVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQ 203 (1009)
T ss_pred ----EeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHH
Confidence 000001122334444 3 22 12235678999999999999999776 3445554 247888899
Q ss_pred HHHH
Q 019316 210 DYVY 213 (343)
Q Consensus 210 ~~I~ 213 (343)
+.|+
T Consensus 204 ~ai~ 207 (1009)
T COG0841 204 SAIR 207 (1009)
T ss_pred HHHH
Confidence 9995
No 52
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=23.32 E-value=1.8e+02 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=26.7
Q ss_pred CceEEEEEeeechhhHHHHHHHHhCCCCcceeeecccCc
Q 019316 60 PKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTH 98 (343)
Q Consensus 60 ~~~v~l~V~M~C~~Ca~kIe~~L~kl~GV~~v~vdl~~~ 98 (343)
+.++.|. ++|-+-++..+.+++||.++.+-+..+
T Consensus 45 ~~~a~fa-----gGCFWg~E~~F~~l~GV~~t~vGYagG 78 (213)
T PRK00058 45 MEQAIFG-----MGCFWGAERLFWQLPGVYSTAVGYAGG 78 (213)
T ss_pred ccEEEEE-----ccCcchhHHHHhcCCCEEEEEeeecCC
Confidence 4455554 778888888999999999998887754
No 53
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=3.4e+02 Score=20.62 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred EEEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec--cCChHHHHHHHHHhcCCce
Q 019316 159 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG--VFDPPKLVDYVYKRTGKHA 220 (343)
Q Consensus 159 ~v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~~~~~Lv~~I~kk~G~~a 220 (343)
..+|.+ |++|+.=.-.+.++|.+++- +..+.|.. .....+|...+....||..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~~---------Ge~LeV~~ddp~~~~dIp~~~~~~~~~~l 60 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLKP---------GEILEVIADDPAAKEDIPAWAKKEGGHEL 60 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCCC---------CCEEEEEecCcchHHHHHHHHHHcCCcEE
Confidence 468899 99999999999999999842 23444442 2445677777742344544
No 54
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=22.97 E-value=1.8e+02 Score=25.40 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=30.3
Q ss_pred chHHHHHHHHhccCCeeEEeeecCCCe--------------EEEe---ccCChHHHHHHHH
Q 019316 170 GCSLEIKKRILRMEGVESAEPDLKNSQ--------------VTVK---GVFDPPKLVDYVY 213 (343)
Q Consensus 170 ~C~~kIek~L~kl~GV~sv~vd~~~~~--------------vtV~---g~~~~~~Lv~~I~ 213 (343)
+|-+-++..+.+++||.++.+-..++. |.|+ ..++-+.|+...-
T Consensus 9 GCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~ 69 (156)
T PRK05528 9 GCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLF 69 (156)
T ss_pred CCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHH
Confidence 466777888889999999998665432 3333 2366777777664
No 55
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=22.82 E-value=1.1e+02 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.577 Sum_probs=23.0
Q ss_pred EEEeecccCcchH------HHHHHHHhccCCeeEEeeec
Q 019316 160 VVLKVHMHCEGCS------LEIKKRILRMEGVESAEPDL 192 (343)
Q Consensus 160 v~l~VGM~C~~C~------~kIek~L~kl~GV~sv~vd~ 192 (343)
+.|.+-++..+|. ..|+.+|..++||.++.|++
T Consensus 115 V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 115 VDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 4444544555553 45888899999999888765
No 56
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=22.62 E-value=2.9e+02 Score=22.22 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=31.4
Q ss_pred EEEee-cccCcchHHHHHHHHhccCCeeEEeeecCCCeEEEec--cCChHHHHHHHH
Q 019316 160 VVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG--VFDPPKLVDYVY 213 (343)
Q Consensus 160 v~l~V-GM~C~~C~~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~~~~~Lv~~I~ 213 (343)
+.|+| |++-..+...|+..|..+..|.-|.+..-.....|.. .-....++..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 35777 7777777999999999999898888877666666763 345677788775
No 57
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=22.52 E-value=3.2e+02 Score=20.35 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=36.4
Q ss_pred cchHHHHHHHHhcc---CCeeEEeeecCCCeEEEe--ccCChHHHHHHHHHhcCCceE
Q 019316 169 EGCSLEIKKRILRM---EGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAV 221 (343)
Q Consensus 169 ~~C~~kIek~L~kl---~GV~sv~vd~~~~~vtV~--g~~~~~~Lv~~I~kk~G~~a~ 221 (343)
..-..++..+|.++ +--..+..|..++.+.|. |.+..+-++..|+.+.|..+.
T Consensus 15 ~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~ 72 (75)
T PF14492_consen 15 KEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVE 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEE
T ss_pred HhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeE
Confidence 44556666666665 233467888888988887 557788889999766665544
No 58
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=21.15 E-value=97 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=23.5
Q ss_pred eEEEEEeeechhhH------HHHHHHHhCCCCcceeeecc
Q 019316 62 EIVLKVYMHCEGCA------RKVRRCLKGFEGVEDVITDC 95 (343)
Q Consensus 62 ~v~l~V~M~C~~Ca------~kIe~~L~kl~GV~~v~vdl 95 (343)
.+.|.+.++..+|. ..|+.+|..++||.+|.|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 34455555655555 34888899999999887764
No 59
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.09 E-value=2.2e+02 Score=20.37 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=23.3
Q ss_pred EEEEeecccCcc-hHHHHHHHHhccCCeeEEee
Q 019316 159 IVVLKVHMHCEG-CSLEIKKRILRMEGVESAEP 190 (343)
Q Consensus 159 ~v~l~VGM~C~~-C~~kIek~L~kl~GV~sv~v 190 (343)
.+.|.|...-.. -...|.+.|++++||.+|.+
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 445555334444 77899999999999998864
No 60
>PRK04435 hypothetical protein; Provisional
Probab=20.71 E-value=3.9e+02 Score=22.79 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=22.8
Q ss_pred EEEEeeccc-CcchHHHHHHHHhccCCeeEEee
Q 019316 159 IVVLKVHMH-CEGCSLEIKKRILRMEGVESAEP 190 (343)
Q Consensus 159 ~v~l~VGM~-C~~C~~kIek~L~kl~GV~sv~v 190 (343)
.+.|.|... -......|...|+.++||.+|.+
T Consensus 111 ~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 111 NVTISIDTSSMEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred EEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 445555222 23478899999999999998875
No 61
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=20.19 E-value=1.5e+02 Score=26.78 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.4
Q ss_pred hHHHHHHHHhccCCeeEEeeecCCCe
Q 019316 171 CSLEIKKRILRMEGVESAEPDLKNSQ 196 (343)
Q Consensus 171 C~~kIek~L~kl~GV~sv~vd~~~~~ 196 (343)
|-+-++..+.+++||.++.+-..++.
T Consensus 17 CFWg~E~~f~~l~GV~~t~vGYagG~ 42 (186)
T PRK13014 17 CFWGVEGVFQHVPGVVSVVSGYSGGH 42 (186)
T ss_pred CceeeHHHHccCCCEEEEEeeecCCC
Confidence 45556667778899999998776653
Done!