Query 019319
Match_columns 343
No_of_seqs 192 out of 459
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 9.2E-88 2E-92 640.1 25.1 303 25-328 3-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 6.2E-80 1.3E-84 593.3 33.1 312 22-334 14-328 (328)
3 PRK10446 ribosomal protein S6 100.0 1.3E-27 2.9E-32 228.6 26.4 252 44-333 13-293 (300)
4 COG0189 RimK Glutathione synth 100.0 2.7E-28 5.8E-33 235.1 21.5 222 56-316 61-296 (318)
5 TIGR02144 LysX_arch Lysine bio 100.0 3.6E-27 7.8E-32 222.3 25.5 244 46-330 12-279 (280)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 7.5E-26 1.6E-30 212.0 24.0 233 45-316 12-262 (277)
7 PF08443 RimK: RimK-like ATP-g 99.9 4.3E-25 9.3E-30 198.2 15.4 167 114-317 2-176 (190)
8 PRK01372 ddl D-alanine--D-alan 99.9 3.2E-22 6.9E-27 191.0 25.5 235 45-312 24-273 (304)
9 TIGR01380 glut_syn glutathione 99.9 3.9E-22 8.4E-27 192.2 22.4 249 31-328 2-310 (312)
10 TIGR01205 D_ala_D_alaTIGR D-al 99.9 9.3E-22 2E-26 188.6 24.8 236 46-312 20-288 (315)
11 PRK12458 glutathione synthetas 99.9 2.4E-21 5.1E-26 188.7 23.2 249 42-335 9-330 (338)
12 PRK05246 glutathione synthetas 99.9 2.7E-21 5.9E-26 186.6 23.0 252 31-330 3-313 (316)
13 PRK14571 D-alanyl-alanine synt 99.9 1.6E-20 3.5E-25 179.4 24.0 232 48-319 23-274 (299)
14 TIGR03103 trio_acet_GNAT GNAT- 99.9 3E-20 6.6E-25 191.4 25.4 237 44-316 240-528 (547)
15 PRK14570 D-alanyl-alanine synt 99.9 3.2E-20 7E-25 182.5 22.3 216 74-317 87-323 (364)
16 PRK01966 ddl D-alanyl-alanine 99.9 7.3E-20 1.6E-24 177.8 22.5 237 49-315 27-306 (333)
17 PRK14569 D-alanyl-alanine synt 99.9 1.1E-19 2.4E-24 173.8 22.3 232 49-318 27-273 (296)
18 PRK14568 vanB D-alanine--D-lac 99.8 1.8E-19 4E-24 175.7 22.6 211 74-318 90-318 (343)
19 PRK14016 cyanophycin synthetas 99.8 1.3E-19 2.9E-24 192.2 22.0 231 48-312 164-450 (727)
20 PRK02471 bifunctional glutamat 99.8 2E-19 4.3E-24 190.8 22.5 236 43-312 431-729 (752)
21 PRK14572 D-alanyl-alanine synt 99.8 4.6E-19 9.9E-24 173.2 22.4 215 74-318 88-323 (347)
22 KOG1057 Arp2/3 complex-interac 99.8 2.2E-19 4.8E-24 183.1 17.6 265 26-327 37-340 (1018)
23 PF07478 Dala_Dala_lig_C: D-al 99.8 3.5E-20 7.6E-25 168.3 9.9 164 134-320 6-185 (203)
24 TIGR02068 cya_phycin_syn cyano 99.8 1.4E-18 3E-23 187.6 18.6 232 45-312 160-449 (864)
25 TIGR01435 glu_cys_lig_rel glut 99.8 1.2E-17 2.7E-22 175.5 19.7 238 42-312 418-715 (737)
26 TIGR02291 rimK_rel_E_lig alpha 99.8 3.1E-17 6.7E-22 157.7 19.4 195 103-312 25-273 (317)
27 PRK14573 bifunctional D-alanyl 99.7 3.5E-16 7.7E-21 168.3 24.2 262 29-315 451-761 (809)
28 COG1181 DdlA D-alanine-D-alani 99.7 6.4E-16 1.4E-20 149.2 22.3 251 44-319 21-295 (317)
29 TIGR01161 purK phosphoribosyla 99.7 1.5E-15 3.2E-20 148.4 23.5 230 45-312 10-268 (352)
30 TIGR01142 purT phosphoribosylg 99.7 6.4E-16 1.4E-20 152.0 21.1 229 46-316 11-278 (380)
31 PRK06019 phosphoribosylaminoim 99.7 2.7E-15 5.8E-20 148.0 20.8 228 45-312 13-270 (372)
32 PLN02948 phosphoribosylaminoim 99.6 2.5E-14 5.5E-19 148.4 23.2 244 25-312 18-293 (577)
33 PF13535 ATP-grasp_4: ATP-gras 99.6 3.4E-15 7.3E-20 131.0 13.9 164 112-310 1-180 (184)
34 PRK07206 hypothetical protein; 99.6 4.1E-14 9E-19 140.9 22.7 230 47-317 15-295 (416)
35 PRK05294 carB carbamoyl phosph 99.6 3.7E-14 7.9E-19 156.6 24.1 228 43-310 574-842 (1066)
36 PRK12767 carbamoyl phosphate s 99.6 3.9E-14 8.4E-19 136.3 21.4 168 100-310 95-271 (326)
37 PRK06849 hypothetical protein; 99.6 8.4E-14 1.8E-18 137.8 21.9 167 102-310 103-277 (389)
38 TIGR01369 CPSaseII_lrg carbamo 99.6 1E-13 2.2E-18 152.8 24.3 229 43-310 574-842 (1050)
39 PRK09288 purT phosphoribosylgl 99.6 8.3E-14 1.8E-18 137.7 21.2 230 45-316 23-291 (395)
40 PRK08462 biotin carboxylase; V 99.6 1.4E-13 3E-18 138.6 20.2 229 44-312 14-298 (445)
41 PRK12833 acetyl-CoA carboxylas 99.6 3E-13 6.6E-18 137.2 20.7 177 100-312 102-299 (467)
42 PRK05586 biotin carboxylase; V 99.6 2.5E-13 5.4E-18 137.0 19.3 179 99-312 98-296 (447)
43 TIGR00514 accC acetyl-CoA carb 99.5 4.6E-13 9.9E-18 135.1 20.4 230 44-311 12-295 (449)
44 PRK13790 phosphoribosylamine-- 99.5 7E-13 1.5E-17 131.2 21.1 215 46-311 16-252 (379)
45 PLN02735 carbamoyl-phosphate s 99.5 8.2E-13 1.8E-17 145.9 23.2 230 47-310 598-877 (1102)
46 PLN02735 carbamoyl-phosphate s 99.5 7E-13 1.5E-17 146.4 21.9 233 44-312 44-322 (1102)
47 PRK02186 argininosuccinate lya 99.5 1.1E-12 2.5E-17 142.5 23.0 224 48-310 18-278 (887)
48 PRK08463 acetyl-CoA carboxylas 99.5 1.3E-12 2.8E-17 133.0 22.0 229 45-312 13-296 (478)
49 PRK08654 pyruvate carboxylase 99.5 1.6E-12 3.4E-17 133.0 22.3 176 99-312 98-295 (499)
50 PRK12815 carB carbamoyl phosph 99.5 1.8E-12 4E-17 143.2 24.4 227 45-310 577-840 (1068)
51 PRK07178 pyruvate carboxylase 99.5 1.6E-12 3.4E-17 132.2 20.8 230 46-312 14-295 (472)
52 PRK08591 acetyl-CoA carboxylas 99.5 1.9E-12 4.1E-17 130.5 21.0 179 99-312 98-296 (451)
53 TIGR01235 pyruv_carbox pyruvat 99.5 3.3E-12 7.2E-17 140.9 20.8 178 99-312 98-296 (1143)
54 PRK06524 biotin carboxylase-li 99.5 2.5E-12 5.4E-17 129.9 18.0 191 91-311 118-325 (493)
55 PRK00885 phosphoribosylamine-- 99.5 7.3E-12 1.6E-16 125.3 21.3 102 99-215 85-200 (420)
56 PRK05294 carB carbamoyl phosph 99.5 3.2E-12 7E-17 141.4 20.2 230 47-310 31-305 (1066)
57 TIGR01369 CPSaseII_lrg carbamo 99.5 3.8E-12 8.3E-17 140.5 20.6 233 44-310 27-303 (1050)
58 PRK06111 acetyl-CoA carboxylas 99.4 9.7E-12 2.1E-16 125.2 20.8 179 99-311 98-295 (450)
59 PLN02257 phosphoribosylamine-- 99.4 1.6E-11 3.4E-16 123.6 20.7 216 47-312 52-293 (434)
60 PRK12815 carB carbamoyl phosph 99.4 1.7E-11 3.6E-16 135.6 20.8 231 45-312 29-304 (1068)
61 PRK13789 phosphoribosylamine-- 99.4 1.9E-11 4.1E-16 122.8 17.4 138 44-215 55-206 (426)
62 TIGR00877 purD phosphoribosyla 99.4 5E-11 1.1E-15 119.2 19.8 180 99-312 87-293 (423)
63 PRK12999 pyruvate carboxylase; 99.3 2.2E-11 4.8E-16 134.8 17.8 177 99-312 102-300 (1146)
64 PF02655 ATP-grasp_3: ATP-gras 99.3 4.8E-12 1E-16 110.7 8.7 149 113-307 1-156 (161)
65 TIGR02712 urea_carbox urea car 99.3 1.6E-10 3.5E-15 128.6 21.9 177 99-312 97-295 (1201)
66 PRK06395 phosphoribosylamine-- 99.3 4.2E-10 9.2E-15 113.4 20.2 215 45-310 53-294 (435)
67 PF15632 ATPgrasp_Ter: ATP-gra 99.2 1.1E-09 2.4E-14 106.3 19.0 185 74-310 66-282 (329)
68 COG0458 CarB Carbamoylphosphat 99.2 1E-09 2.2E-14 107.6 17.7 227 51-310 23-291 (400)
69 COG0439 AccC Biotin carboxylas 99.2 3.8E-10 8.3E-15 113.4 14.4 178 99-312 98-296 (449)
70 PF02750 Synapsin_C: Synapsin, 99.1 2.7E-09 6E-14 95.0 14.9 165 105-308 1-177 (203)
71 PF02786 CPSase_L_D2: Carbamoy 99.1 8.4E-10 1.8E-14 101.0 10.2 163 115-312 1-183 (211)
72 COG0027 PurT Formate-dependent 99.0 1.5E-08 3.1E-13 96.2 17.2 225 48-315 26-290 (394)
73 PRK05784 phosphoribosylamine-- 99.0 3.6E-08 7.8E-13 100.7 20.3 135 46-215 58-217 (486)
74 PF02955 GSH-S_ATP: Prokaryoti 99.0 4.8E-09 1E-13 93.0 10.5 138 136-308 11-161 (173)
75 PF14398 ATPgrasp_YheCD: YheC/ 98.8 6.4E-08 1.4E-12 91.4 14.6 196 95-318 3-241 (262)
76 COG0026 PurK Phosphoribosylami 98.8 2.7E-07 5.8E-12 89.9 19.0 223 49-310 16-268 (375)
77 COG1821 Predicted ATP-utilizin 98.8 1.4E-07 3.1E-12 87.2 15.5 162 88-310 92-257 (307)
78 PF02222 ATP-grasp: ATP-grasp 98.8 5E-08 1.1E-12 86.6 9.7 151 134-312 5-164 (172)
79 COG2232 Predicted ATP-dependen 98.7 6.7E-07 1.4E-11 85.5 17.5 218 44-307 19-272 (389)
80 PRK13278 purP 5-formaminoimida 98.7 4.9E-07 1.1E-11 88.9 17.2 91 99-213 107-211 (358)
81 PF14397 ATPgrasp_ST: Sugar-tr 98.7 1.8E-06 3.8E-11 82.6 19.4 194 105-312 16-263 (285)
82 KOG0238 3-Methylcrotonyl-CoA c 98.7 6.9E-07 1.5E-11 89.4 15.8 179 98-312 93-292 (670)
83 PRK13277 5-formaminoimidazole- 98.7 5.6E-07 1.2E-11 88.1 14.7 160 114-307 125-317 (366)
84 KOG3895 Synaptic vesicle prote 98.6 5.5E-07 1.2E-11 86.5 12.1 220 74-330 155-390 (488)
85 COG3919 Predicted ATP-grasp en 98.6 6.6E-07 1.4E-11 84.5 11.4 171 103-310 102-289 (415)
86 COG1038 PycA Pyruvate carboxyl 98.5 3.2E-06 6.8E-11 88.6 16.0 173 99-308 104-298 (1149)
87 COG4770 Acetyl/propionyl-CoA c 98.4 6.7E-06 1.5E-10 83.6 15.8 178 99-312 98-296 (645)
88 PF03133 TTL: Tubulin-tyrosine 98.4 6.4E-06 1.4E-10 78.5 14.7 98 113-214 19-126 (292)
89 COG0151 PurD Phosphoribosylami 98.3 2.2E-05 4.8E-10 77.8 16.4 219 46-310 52-290 (428)
90 PF01071 GARS_A: Phosphoribosy 98.2 9.2E-06 2E-10 73.3 10.3 89 115-218 2-106 (194)
91 KOG0369 Pyruvate carboxylase [ 98.2 4.9E-05 1.1E-09 78.6 14.8 226 27-310 77-326 (1176)
92 PF14305 ATPgrasp_TupA: TupA-l 97.5 0.011 2.4E-07 55.1 17.5 179 105-312 10-221 (239)
93 KOG0370 Multifunctional pyrimi 97.4 0.00087 1.9E-08 71.9 9.9 195 100-332 1017-1230(1435)
94 TIGR01016 sucCoAbeta succinyl- 97.0 0.0016 3.4E-08 64.9 7.4 89 117-216 6-116 (386)
95 PF14403 CP_ATPgrasp_2: Circul 97.0 0.0056 1.2E-07 62.0 11.1 151 43-203 199-385 (445)
96 PRK00696 sucC succinyl-CoA syn 96.8 0.0025 5.5E-08 63.4 7.0 91 115-216 4-116 (388)
97 KOG2156 Tubulin-tyrosine ligas 96.8 0.0046 1E-07 62.8 8.3 73 136-213 282-360 (662)
98 PF14243 DUF4343: Domain of un 95.9 0.32 6.9E-06 41.2 13.3 109 162-310 3-117 (130)
99 KOG0368 Acetyl-CoA carboxylase 94.9 0.26 5.7E-06 55.8 11.7 187 100-307 162-375 (2196)
100 PF13549 ATP-grasp_5: ATP-gras 94.4 0.022 4.7E-07 52.7 1.9 92 113-215 9-120 (222)
101 PF07065 D123: D123; InterPro 92.3 0.63 1.4E-05 44.9 8.3 90 194-312 151-242 (299)
102 KOG2157 Predicted tubulin-tyro 92.1 0.15 3.3E-06 52.4 3.8 56 158-216 197-270 (497)
103 KOG0237 Glycinamide ribonucleo 91.9 2.8 6.1E-05 43.9 12.6 138 46-216 57-208 (788)
104 PF08442 ATP-grasp_2: ATP-gras 89.6 0.92 2E-05 41.3 6.3 79 120-208 8-108 (202)
105 PRK14046 malate--CoA ligase su 88.8 1.3 2.8E-05 44.4 7.2 87 119-216 8-116 (392)
106 PF02951 GSH-S_N: Prokaryotic 85.6 2 4.4E-05 35.8 5.4 80 31-111 2-119 (119)
107 COG1759 5-formaminoimidazole-4 81.1 2.4 5.3E-05 41.2 4.7 66 115-202 124-203 (361)
108 COG0045 SucC Succinyl-CoA synt 80.9 6.4 0.00014 39.2 7.6 83 120-212 9-110 (387)
109 KOG2158 Tubulin-tyrosine ligas 68.8 2.3 5.1E-05 43.2 1.2 54 159-216 225-285 (565)
110 PHA02117 glutathionylspermidin 65.8 22 0.00048 35.8 7.4 165 45-225 192-380 (397)
111 PLN02235 ATP citrate (pro-S)-l 62.8 23 0.0005 35.9 6.9 72 133-204 23-114 (423)
112 KOG0370 Multifunctional pyrimi 59.8 3.6 7.9E-05 45.3 0.6 229 44-308 398-670 (1435)
113 PLN00124 succinyl-CoA ligase [ 57.4 10 0.00022 38.5 3.3 62 118-190 34-106 (422)
114 COG0754 Gsp Glutathionylspermi 52.4 7.7 0.00017 38.3 1.5 104 97-218 248-357 (387)
115 PF04174 CP_ATPgrasp_1: A circ 50.3 17 0.00037 35.7 3.5 27 282-310 67-93 (330)
116 TIGR02307 RNA_lig_RNL2 RNA lig 49.1 1.1E+02 0.0024 30.0 8.9 32 192-225 24-56 (325)
117 PF02729 OTCace_N: Aspartate/o 47.7 43 0.00094 28.6 5.3 77 25-107 35-123 (142)
118 PF02310 B12-binding: B12 bind 40.0 95 0.0021 24.7 6.0 33 35-67 6-38 (121)
119 PF08532 Glyco_hydro_42M: Beta 37.2 53 0.0011 29.5 4.4 67 48-118 34-103 (207)
120 KOG2157 Predicted tubulin-tyro 36.8 39 0.00085 35.0 3.9 33 283-317 377-409 (497)
121 COG1181 DdlA D-alanine-D-alani 36.3 4.2 9.1E-05 39.6 -3.1 110 99-223 35-158 (317)
122 PRK12562 ornithine carbamoyltr 34.4 1E+02 0.0022 30.3 6.2 75 27-107 43-129 (334)
123 PF13380 CoA_binding_2: CoA bi 32.3 2.5E+02 0.0055 22.7 7.4 67 40-107 11-88 (116)
124 KOG2983 Uncharacterized conser 30.9 1.6E+02 0.0036 28.1 6.6 85 195-312 165-255 (334)
125 PF04556 DpnII: DpnII restrict 30.7 73 0.0016 30.7 4.3 36 275-312 179-220 (286)
126 PRK00856 pyrB aspartate carbam 30.5 96 0.0021 30.0 5.2 75 27-108 43-131 (305)
127 PF12058 DUF3539: Protein of u 29.4 33 0.00071 27.0 1.4 19 198-216 3-23 (88)
128 PRK10507 bifunctional glutathi 28.8 1.7E+02 0.0038 31.3 7.1 107 99-224 482-600 (619)
129 PRK11303 DNA-binding transcrip 28.4 2E+02 0.0043 26.9 7.0 61 5-66 35-100 (328)
130 TIGR00853 pts-lac PTS system, 28.4 65 0.0014 25.5 3.1 63 43-108 17-85 (95)
131 PRK01713 ornithine carbamoyltr 27.4 2.5E+02 0.0055 27.5 7.6 74 27-107 44-130 (334)
132 TIGR02049 gshA_ferroox glutama 26.8 2E+02 0.0044 28.8 6.7 58 163-223 260-340 (403)
133 PRK03515 ornithine carbamoyltr 26.7 1.5E+02 0.0032 29.2 5.8 74 27-106 43-128 (336)
134 cd06353 PBP1_BmpA_Med_like Per 26.3 2E+02 0.0044 26.6 6.6 35 32-66 2-40 (258)
135 PRK04284 ornithine carbamoyltr 25.9 2.7E+02 0.0059 27.2 7.5 73 27-106 43-128 (332)
136 PRK02102 ornithine carbamoyltr 25.5 1.1E+02 0.0024 30.0 4.7 73 27-106 44-129 (331)
137 PF08886 GshA: Glutamate-cyste 24.8 1.8E+02 0.004 29.2 6.0 58 163-223 263-343 (404)
138 COG0540 PyrB Aspartate carbamo 24.3 1.3E+02 0.0027 29.5 4.7 71 28-105 45-130 (316)
139 PRK14805 ornithine carbamoyltr 23.2 1.3E+02 0.0029 29.0 4.7 75 27-108 36-123 (302)
140 PRK00779 ornithine carbamoyltr 23.0 1.4E+02 0.0031 28.8 4.9 75 27-107 41-127 (304)
141 TIGR00658 orni_carb_tr ornithi 22.8 1.5E+02 0.0032 28.6 5.0 73 27-106 37-122 (304)
142 TIGR02417 fruct_sucro_rep D-fr 22.6 3.6E+02 0.0078 25.2 7.6 61 6-66 35-99 (327)
143 PRK14804 ornithine carbamoyltr 22.5 4E+02 0.0087 25.8 7.9 75 27-108 41-127 (311)
144 cd02065 B12-binding_like B12 b 21.8 2.1E+02 0.0046 22.6 5.1 22 46-67 16-37 (125)
145 TIGR00670 asp_carb_tr aspartat 21.6 1.5E+02 0.0033 28.5 4.8 75 27-108 37-125 (301)
146 cd03143 A4_beta-galactosidase_ 21.3 1.7E+02 0.0036 24.6 4.6 56 48-107 30-88 (154)
147 cd05565 PTS_IIB_lactose PTS_II 21.0 4.1E+02 0.0089 21.2 6.4 76 43-118 14-92 (99)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=9.2e-88 Score=640.09 Aligned_cols=303 Identities=52% Similarity=0.884 Sum_probs=250.7
Q ss_pred cCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019319 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (343)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi 104 (343)
..+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++|||||+||||+|++.|++.+++|.++||+++||
T Consensus 3 ~~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~vi 82 (307)
T PF05770_consen 3 TQRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVI 82 (307)
T ss_dssp GGGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEE
T ss_pred ccccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~ 184 (343)
||+++|++++||.+|+++|.++......+.|++|+++++.++.+++.+.+.+++|+||+||||++||||+.||.|+||++
T Consensus 83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 162 (307)
T PF05770_consen 83 DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFN 162 (307)
T ss_dssp T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-S
T ss_pred cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEEC
Confidence 99999999999999999999887666677999999999976667788888899999999999999999999999999999
Q ss_pred hhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCC--cccc
Q 019319 185 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD--PCVA 262 (343)
Q Consensus 185 ~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~--~~~~ 262 (343)
+++|+++++|||+||||||+|++|||||||++++++.|+|+||+..++.....+.|+|+++|+.++.+....++ +...
T Consensus 163 ~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~ 242 (307)
T PF05770_consen 163 EEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQV 242 (307)
T ss_dssp GGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTT
T ss_pred HHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccc
Confidence 99999999999999999999999999999999999999999999987766667889999999988776665555 4456
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchHHHHHhHHhh
Q 019319 263 ELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIK 328 (343)
Q Consensus 263 ~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~~l~~~l~~ 328 (343)
++|+.+.++++|..+|++|||+|||||+|++++|+++||||||||||||+ |||||+.+|+++|++
T Consensus 243 ~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~-~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 243 EMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYK-KVPDFESVLTDFILD 307 (307)
T ss_dssp TS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TT-TSCTHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCcc-CCCChHHHHHHHhhC
Confidence 78888999999999999999999999999999995589999999999999 999999999999975
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=6.2e-80 Score=593.28 Aligned_cols=312 Identities=70% Similarity=1.079 Sum_probs=283.3
Q ss_pred ccccCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019319 22 QTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (343)
Q Consensus 22 ~~~~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v 101 (343)
+.+...++++|||||++||++||.|++|+++|+++||++++||+++||.+|||||+||||++++.|++.+++|..+|||+
T Consensus 14 ~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred cccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
+||||+++|++|+||+.|+++|++++++.+.++|++|+|+++.+.+..+......++++||+|+||+.||||++||+|++
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~l 173 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSL 173 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEE
Confidence 99999999999999999999999998877777899999999964433333335678999999999999999999999999
Q ss_pred EeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCC---CC
Q 019319 182 AYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD---LD 258 (343)
Q Consensus 182 v~~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~---~~ 258 (343)
++++++|..+++|+|+||||||+|+|||||||||++.++.|+|+|||..++..+..|.++|+++++.+..+..+. ++
T Consensus 174 v~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~ 253 (328)
T PLN02941 174 AYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLD 253 (328)
T ss_pred ecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999888999999998544334568899999998876665554 55
Q ss_pred ccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchHHHHHhHHhhhcccch
Q 019319 259 PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPV 334 (343)
Q Consensus 259 ~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~~l~~~l~~~i~~~~ 334 (343)
+...++|+++++++||.+++++||++|||||+|++.++|++|+||||||||||+ |||+|+.+|+|+|++++++++
T Consensus 254 ~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k-~~p~~~~~l~~~~~~~~~~~~ 328 (328)
T PLN02941 254 PEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYA-KMPGYETVLTDFLLSLVQKKY 328 (328)
T ss_pred cccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccc-cCCchHHHHHHHHHHHHhcCC
Confidence 556678888889999999999999999999999997666689999999999999 999999999999999998764
No 3
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=228.60 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=177.3
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCC---CC-----------cCCCccEEEEccCch--hHHHHHHHHHHhCCCceeeChh
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRP---LS-----------DQGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~---l~-----------~q~~fDvilhK~t~~--~~~~~l~~~~~~~p~v~ViDp~ 107 (343)
.+-.++.++++++|++++.+|+++. +. ...++|++|.+..+. .......+.. +..|++++|++
T Consensus 13 ~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~l-e~~g~~v~n~~ 91 (300)
T PRK10446 13 YSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQF-EMLGSYPLNES 91 (300)
T ss_pred hhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHH-HHCCCceecCH
Confidence 4446699999999999999998862 11 223799999988652 1112222333 22468999999
Q ss_pred hHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhh
Q 019319 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (343)
Q Consensus 108 ~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~ 187 (343)
.++..|.||..+.+.|++. +||+|++.++. +.+.+.+.+ ..-.+||+|+||..+ + +|.++.++.+.++
T Consensus 92 ~a~~~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~-~~~~~~P~VvKP~~g--~-~g~GV~~v~~~~~ 159 (300)
T PRK10446 92 VAIARARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLI-DMVGGAPLVVKLVEG--T-QGIGVVLAETRQA 159 (300)
T ss_pred HHHHhhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHH-HHhCCCCEEEEECCC--C-CcccEEEEcCHHH
Confidence 9999999999999999976 89999998874 222222222 222379999999884 3 5889999999877
Q ss_pred Hhc-------cCCCeEEEecccC-CCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCc
Q 019319 188 LKK-------LEPPLVLQEFVNH-GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (343)
Q Consensus 188 L~~-------l~~p~v~QEFI~h-~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (343)
+.. ++.++++||||++ .|++++|+|+|++++.+.++..+. ++|..+ + . .|......
T Consensus 160 ~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~---~~~~~n-----~---~-~g~~~~~~---- 223 (300)
T PRK10446 160 AESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE---GDFRSN-----L---H-RGGAASVA---- 223 (300)
T ss_pred HHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC---Cchhhe-----e---c-cCCeeccC----
Confidence 653 3668999999986 599999999999987664443211 122211 1 1 11111111
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcc-----hHHHHHhHHhhhcccc
Q 019319 260 CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAG-----VRAHIYRLPIKPDTEP 333 (343)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~-----~~~~l~~~l~~~i~~~ 333 (343)
++ .+.++++|.++.++||+.++|||++.+. +| +||+|||..|||+ +++. +.+.+.+++.+.+...
T Consensus 224 ---~l--~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~-~~~~~~g~~~~~~~~~~i~~~~~~~ 293 (300)
T PRK10446 224 ---SI--TPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLE-GIEKTTGIDIAGKMIRWIERHATTE 293 (300)
T ss_pred ---CC--CHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChh-hhHHHHCcCHHHHHHHHHHHhcccc
Confidence 12 3568999999999999999999999875 34 7899999999998 8764 4455555555555433
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-28 Score=235.15 Aligned_cols=222 Identities=23% Similarity=0.302 Sum_probs=156.2
Q ss_pred cceEEEEeeCCCCCCcCCCccEEEEccCchhHH--HHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCC
Q 019319 56 KGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR--QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYG 133 (343)
Q Consensus 56 ~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~--~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~ 133 (343)
.+..+..+.... .....++|+++.|.++.... ..++. .+.-|++||||+++|+.|.||+.+++.|+..
T Consensus 61 ~~~~~~~~~~~~-~~~~~~~D~i~~R~~~~~~~~~~~~~~--~E~~G~~viN~p~~i~~~~nK~~~~~~l~~~------- 130 (318)
T COG0189 61 IGLHYELIEEED-LSLLDELDVIIMRKDPPFDFATRFLRL--AERKGVPVINDPQSIRRCRNKLYTTQLLAKA------- 130 (318)
T ss_pred cccccccccccc-cchhccCCEEEEecCCchhhHHHHHHH--HHHcCCeEECCHHHHHhhhhHHHHHHHHHhc-------
Confidence 344444443332 22344899999999874332 12222 3446999999999999999999999999965
Q ss_pred CccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChh-hHhcc--------CCCeEEEecccCC
Q 019319 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL--------EPPLVLQEFVNHG 204 (343)
Q Consensus 134 ~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~-~L~~l--------~~p~v~QEFI~h~ 204 (343)
++|+|+|+++.+. ++... .....++||+|+||+. || ++.++.++.+.+ +|.++ ..++++||||+..
T Consensus 131 ~ipvP~T~i~~~~-~~~~~-~~~~~~g~pvVlKp~~--Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~ 205 (318)
T COG0189 131 GIPVPPTLITRDP-DEAAE-FVAEHLGFPVVLKPLD--GS-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205 (318)
T ss_pred CCCCCCEEEEcCH-HHHHH-HHHHhcCCCEEEeeCC--CC-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc
Confidence 8999999999632 22332 3456789999999988 56 899999999998 76653 2369999999998
Q ss_pred CcEEEEEEECCEEEEEE---EecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh
Q 019319 205 GVLFKVYIVGEAIKVVR---RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL 281 (343)
Q Consensus 205 g~~~Kv~VIG~~v~~~~---R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l 281 (343)
+.+.|.+++||.+.+++ ++-.. .++|++| .+.+ +.+.... + .++++++|.+++++|
T Consensus 206 ~~~~rrivv~~~~~~~~y~~~R~~~---~~~~R~N--------~a~G-g~~e~~~-------l--~~e~~elA~kaa~~l 264 (318)
T COG0189 206 KRDDRRVLVGGGEVVAIYALARIPA---SGDFRSN--------LARG-GRAEPCE-------L--TEEEEELAVKAAPAL 264 (318)
T ss_pred cCCcEEEEEeCCEEeEEeeeccccC---CCCceee--------cccc-ccccccC-------C--CHHHHHHHHHHHHHh
Confidence 87777777777655543 33111 1233322 1211 1122222 2 366899999999999
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCc
Q 019319 282 GLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 282 Gl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
|+.++||||++++ + .+||+|||.+|+++.++.
T Consensus 265 Gl~~~GVDiie~~-~--g~~V~EVN~sP~~~~~i~ 296 (318)
T COG0189 265 GLGLVGVDIIEDK-D--GLYVTEVNVSPTGKGEIE 296 (318)
T ss_pred CCeEEEEEEEecC-C--CcEEEEEeCCCccccchh
Confidence 9999999999874 3 489999999998883433
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.96 E-value=3.6e-27 Score=222.26 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=177.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC-------cCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLS-------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~-------~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~ 118 (343)
.+.|+++++++|+++..+|+.+... +..++|++|.|.........+ .+..+.-|++++||+++++.+.||..
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~-~~~le~~g~~~~n~~~~~~~~~dK~~ 90 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYS-ARLLEALGVPVINSSHVIEACGDKIF 90 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHH-HHHHHHCCCcEECcHHHHHHHhhHHH
Confidence 4568899999999999987775322 225789999985432211122 22334458999999999999999999
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------
Q 019319 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------- 191 (343)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l------- 191 (343)
+++.|+++ +||+|++..+. +.+++.+ ....++||+|+||..+ + +++++.++.+.+++.++
T Consensus 91 ~~~~l~~~-------gip~P~t~~~~-~~~~~~~--~~~~~~~P~vvKP~~g--~-~g~gv~~v~~~~~l~~~~~~~~~~ 157 (280)
T TIGR02144 91 TYLKLAKA-------GVPTPRTYLAF-DREAALK--LAEALGYPVVLKPVIG--S-WGRLVALIRDKDELESLLEHKEVL 157 (280)
T ss_pred HHHHHHHC-------CcCCCCeEeeC-CHHHHHH--HHHHcCCCEEEEECcC--C-CcCCEEEECCHHHHHHHHHHHHhh
Confidence 99999976 89999999884 2222222 1245799999999884 3 57889999999887541
Q ss_pred ----CCCeEEEecccCCCcEEEEEEECCEEEEE-EEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCC
Q 019319 192 ----EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP 266 (343)
Q Consensus 192 ----~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~ 266 (343)
..++++||||++.|++++++|+|+++.+. .|.+ .++..+. +. +....+. +.
T Consensus 158 ~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~~-------------~~-g~~~~~~---------~~ 213 (280)
T TIGR02144 158 GGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTNT-------------AR-GGKAEPC---------PL 213 (280)
T ss_pred cCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhhh-------------hc-CCceecc---------CC
Confidence 25799999999879999999999997754 4444 2222111 10 0001111 11
Q ss_pred hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCc-----chHHHHHhHHhhhc
Q 019319 267 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENA-----GVRAHIYRLPIKPD 330 (343)
Q Consensus 267 ~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~-----~~~~~l~~~l~~~i 330 (343)
.+.++++|.++.+++|+.++|||++.+.+ | .+||+|||..|||. ++. |+...+.+++.+++
T Consensus 214 ~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~-~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 214 DEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFK-NSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchh-hhhHhhCCCHHHHHHHHHHHhh
Confidence 35679999999999999999999998753 3 58999999999999 764 56777777777665
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.95 E-value=7.5e-26 Score=211.96 Aligned_cols=233 Identities=18% Similarity=0.261 Sum_probs=170.0
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCC---Cc----CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPL---SD----QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l---~~----q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~ 117 (343)
..+.++++++++|+++..+|+.+.. .. ...+|+|+.|.........+.+..+. -|++++|+++++..+.||.
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHHhhHH
Confidence 6778999999999999999987532 11 44689999998432222233344432 4789999999999999999
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc------
Q 019319 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------ 191 (343)
Q Consensus 118 ~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l------ 191 (343)
.+++.|++. +|++|++..+. +.+++.+. ...++||+|+||..++ .|.++.++.+.+++..+
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~--~~~~~~p~vvKP~~g~---~g~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAG-SPEEALKL--IEEIGFPVVLKPVFGS---WGRLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeC-CHHHHHHH--HHhcCCCEEEEECcCC---CCCceEEEcCHHHHHHHHHHHHH
Confidence 999999976 89999999885 22223222 2357899999998854 46789999999887542
Q ss_pred -C---CCeEEEecccCC-CcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCC
Q 019319 192 -E---PPLVLQEFVNHG-GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP 266 (343)
Q Consensus 192 -~---~p~v~QEFI~h~-g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~ 266 (343)
. .++++||||++. |.+++|+|+|++++.+.++..+ ++|.++ .+..+. .... . .
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n--------~~~g~~-~~~~-------~--l 215 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN--------LARGGK-AEPC-------P--L 215 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--------hhcCCe-eeec-------C--C
Confidence 2 379999999976 4899999999998876444321 112211 111110 0111 1 1
Q ss_pred hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCc
Q 019319 267 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 267 ~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
.++++++|.++.++||+.++|||++++. +| ++||+|||..||+. ++.
T Consensus 216 ~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~-~~~ 262 (277)
T TIGR00768 216 TEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFK-NSV 262 (277)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchh-hhH
Confidence 3568999999999999999999999986 44 69999999999998 764
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.93 E-value=4.3e-25 Score=198.18 Aligned_cols=167 Identities=28% Similarity=0.438 Sum_probs=97.4
Q ss_pred cCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc--
Q 019319 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (343)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-- 191 (343)
.||..++++|++. +||+|+|.++.+ .+++.+.+...+ +||+|+||..+ + .+.+|.++.+.+++..+
T Consensus 2 ~dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g--~-~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRG--S-SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCC--C-CCCEEEEecCHHHHHHHHH
Confidence 5999999999976 899999999953 334444444444 89999999884 3 58899999999877653
Q ss_pred -----CCCeEEEecccCCC-cEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCC
Q 019319 192 -----EPPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 265 (343)
Q Consensus 192 -----~~p~v~QEFI~h~g-~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p 265 (343)
+.++++|+||++.+ +|+||+|||++++.+++++.++ ++|+++. +.+ +..++ .++
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n~--------~~g------~~~~~--~~l- 129 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTNL--------SRG------GKVEP--YDL- 129 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhhh--------ccC------ceEEE--ecC-
Confidence 67999999999865 9999999999999887666443 2344321 111 11111 112
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcc
Q 019319 266 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAG 317 (343)
Q Consensus 266 ~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~ 317 (343)
.+++.++|.++++++|++++|||++..+ + .+||+|||.+|||+ +++.
T Consensus 130 -~~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~-~~~~ 176 (190)
T PF08443_consen 130 -PEEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFR-GIEE 176 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---T-THHH
T ss_pred -CHHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHh-HHHH
Confidence 2568999999999999999999977654 2 59999999999999 8864
No 8
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.91 E-value=3.2e-22 Score=191.02 Aligned_cols=235 Identities=18% Similarity=0.233 Sum_probs=167.9
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc---CCCccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-hhHHHHhcCHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSM 119 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~ 119 (343)
.-..+.++++++|++++.|+.+..+.+ ...+|+||....+... ...++.+.+. -|++++.+ +.++..|.||..+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~ 102 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLEL-LGIPYTGSGVLASALAMDKLRT 102 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHhCHHHH
Confidence 336688899999999999998875554 4578999998644211 1244555544 48999977 7999999999999
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------C
Q 019319 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------E 192 (343)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~ 192 (343)
.++|.++ +|++|++..+.+.. +... ....++||+|+||..++ +|.++.++.+.+++.+. .
T Consensus 103 k~~l~~~-------gIp~p~~~~~~~~~-~~~~--~~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~ 169 (304)
T PRK01372 103 KLVWQAA-------GLPTPPWIVLTREE-DLLA--AIDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYD 169 (304)
T ss_pred HHHHHHC-------CCCCCCEEEEeCcc-hHHH--HHhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 9999976 89999999996332 2222 23468999999999854 46789999999887642 5
Q ss_pred CCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccC--CCCCCCccccCCCChHHH
Q 019319 193 PPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLL 270 (343)
Q Consensus 193 ~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~--~~~~~~~~~~~~p~~~~~ 270 (343)
.++++||||+ |+++.|.|+|+++....+...+ .+.++|......+... .+..+++.. .+.+
T Consensus 170 ~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~~~~~~-----~~~l 232 (304)
T PRK01372 170 DEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA----------GEFYDYEAKYLAGGTQYICPAGLPAEI-----EAEL 232 (304)
T ss_pred CcEEEEcccC--CEEEEEEEECCCccceEEEEec----------CCEEeeeccccCCCeEEEeCCCCCHHH-----HHHH
Confidence 7899999995 9999999999986644333211 1223332221111100 111121111 3567
Q ss_pred HHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 271 ERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 271 ~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+++|.++.++||+. +++||++++. +| ++||+|||..||+.
T Consensus 233 ~~~a~~~~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~~ 273 (304)
T PRK01372 233 QELALKAYRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGMT 273 (304)
T ss_pred HHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCCC
Confidence 89999999999995 6679999986 35 69999999999998
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.90 E-value=3.9e-22 Score=192.24 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=164.8
Q ss_pred EEEEEecc---cccccccchHHHhhhhhcceEEEEeeCCCCCC---------------c---------------CCCccE
Q 019319 31 VVGYALTS---KKTKSFLQPKLEGLARNKGILFVAIDQNRPLS---------------D---------------QGPFDI 77 (343)
Q Consensus 31 ~VGy~l~~---kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~---------------~---------------q~~fDv 77 (343)
.||+.|-| -|.++....+|..+|+++|+++..+++++... + ...||+
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 81 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDA 81 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCE
Confidence 46666654 45666778889999999999999888875210 0 137899
Q ss_pred EEEccCchh---H--HHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchH
Q 019319 78 VLHKLTGKE---W--RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD 152 (343)
Q Consensus 78 ilhK~t~~~---~--~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~ 152 (343)
||.|-.... . ...+.++.+ .-|++|+||+++++.+.||..+++++ .++|+|++.. +.+.+.+
T Consensus 82 v~~R~~~~~~~~~~~~~~~l~~le-~~g~~viN~p~~i~~~~dK~~~~~~~-----------~~vP~T~v~~-~~~~~~~ 148 (312)
T TIGR01380 82 VLMRKDPPFDMEYIYATYLLELAD-PTGTLVINSPQGLRDANEKLFTLQFP-----------KVIPPTLVTR-DKAEIRA 148 (312)
T ss_pred EEEeCCCCCChhhhHHHHHHHHHH-hCCCeEEeCHHHHHhhhhHHHHhhCc-----------CCCCCEEEeC-CHHHHHH
Confidence 999974321 1 112333332 24899999999999999999977753 1699998764 3333333
Q ss_pred HHHhcCCCCcEEEecCCCCCCCCceeeEEEeCh-hhH-------hcc-CCCeEEEecccC-CCcEEEEEEECCEEEE-EE
Q 019319 153 VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSL-------KKL-EPPLVLQEFVNH-GGVLFKVYIVGEAIKV-VR 221 (343)
Q Consensus 153 ~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~-~~L-------~~l-~~p~v~QEFI~h-~g~~~Kv~VIG~~v~~-~~ 221 (343)
.+.. .+ |+|+||+.+ + ++.++..+... ..+ ..+ ..|+++|+||+. .+.|+||+|+|++++. +.
T Consensus 149 ~~~~--~g-~vVvKPl~G--~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai 222 (312)
T TIGR01380 149 FLAE--HG-DIVLKPLDG--M-GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAV 222 (312)
T ss_pred HHHH--cC-CEEEEECCC--C-CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEE
Confidence 3333 34 999999994 4 67888887652 222 222 468999999986 4689999999999875 55
Q ss_pred Ee-cCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEeCCCC
Q 019319 222 RF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGTR 297 (343)
Q Consensus 222 R~-slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~lGl~l~GvDvi~~~~~g 297 (343)
|+ +.+ ++|+++ ...+ ...... ++ .++..++|.+++ +++|+.+.|||+| |
T Consensus 223 ~R~~~~----gd~r~N--------~~~G-g~~~~~-------~l--~~e~~~ia~~~~~~~~~~gl~~agVDii-----g 275 (312)
T TIGR01380 223 ARIPAG----GEFRGN--------LAVG-GRGEAT-------EL--SERDREICADVAPELKRRGLLFVGIDVI-----G 275 (312)
T ss_pred EecCCC----CCcccc--------ccCC-ceeecc-------CC--CHHHHHHHHHHHHHHHhcCCcEEEEEEe-----C
Confidence 44 332 223322 1111 111111 12 345688999887 6779999999999 2
Q ss_pred CeEEEEEecCC--CCCccCCcc-----hHHHHHhHHhh
Q 019319 298 DQFYVIDINYF--PGEVWENAG-----VRAHIYRLPIK 328 (343)
Q Consensus 298 ~~~~ViDVN~f--Pg~~~gv~~-----~~~~l~~~l~~ 328 (343)
++|+|||.. +||. |+.. +...+.+++.+
T Consensus 276 --~~v~EvN~~~p~~~~-~~~~~~g~~ia~~i~d~l~~ 310 (312)
T TIGR01380 276 --GYLTEVNVTSPTGIR-EIDRQKGVNIAGMLWDAIEK 310 (312)
T ss_pred --CEEEEEecCCcchHH-HHHhhhCCCHHHHHHHHHHh
Confidence 369999975 5897 7653 33444554443
No 10
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.90 E-value=9.3e-22 Score=188.57 Aligned_cols=236 Identities=17% Similarity=0.253 Sum_probs=161.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCC-------CCc--------CCCccEEEEccCch--hHHHHHHHHHHhCCCceeeCh-h
Q 019319 46 QPKLEGLARNKGILFVAIDQNRP-------LSD--------QGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDP-P 107 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~-------l~~--------q~~fDvilhK~t~~--~~~~~l~~~~~~~p~v~ViDp-~ 107 (343)
-..++++++++|++++.|+.+.. +.+ ...+|+|+.-+.+. +. ..++...+ .-|++++++ +
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~-~~~~~~le-~~gip~~g~~~ 97 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGED-GTIQGLLE-LMGIPYTGSGV 97 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCC-cHHHHHHH-HcCCCccCCCH
Confidence 34478889999999999998862 111 25789999865432 11 23344443 358999986 8
Q ss_pred hHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHH---HHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (343)
Q Consensus 108 ~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~---l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~ 184 (343)
.++..|.||..+.+.|+++ +|++|++.++..+.....+. .....++||+|+||..++ +|.++.++.|
T Consensus 98 ~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~~ 167 (315)
T TIGR01205 98 LASALSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVKS 167 (315)
T ss_pred HHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEECC
Confidence 9999999999999999976 89999999886222211110 112468999999998854 4678999999
Q ss_pred hhhHhcc-------CCCeEEEecccCCCcEEEEEEEC-CEEEEE-EEecCCCCccccCccCCceeeeccccccccc--CC
Q 019319 185 QYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVG-EAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--AD 253 (343)
Q Consensus 185 ~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG-~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~ 253 (343)
.++|.+. ..++++|||| +|++|.|.|+| ++.... .+.... ..+++|......+.. ..
T Consensus 168 ~~el~~~~~~~~~~~~~~lvEe~i--~G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 235 (315)
T TIGR01205 168 EEELQAALDEAFEYDEEVLVEQFI--KGRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYVI 235 (315)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCC--CCEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEEe
Confidence 9888653 6789999999 49999999999 443222 111100 002222221111100 01
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 254 DADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+..+++.. .+.++++|.++.++||+ ++++||++++. +| ++||+|||..||+.
T Consensus 236 p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~ 288 (315)
T TIGR01205 236 PAPLDEEL-----EEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMT 288 (315)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCC
Confidence 22222221 35689999999999999 68899999985 34 69999999999998
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=99.89 E-value=2.4e-21 Score=188.74 Aligned_cols=249 Identities=16% Similarity=0.171 Sum_probs=167.2
Q ss_pred ccccchHHHhhhhhcceEEEEeeCCCCCCc--------------------------------------CCCccEEEEccC
Q 019319 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSD--------------------------------------QGPFDIVLHKLT 83 (343)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~--------------------------------------q~~fDvilhK~t 83 (343)
++....+|..+|.++|+++..+++.+.... ...||+|++|-.
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 567778899999999999987776652211 136899999965
Q ss_pred ch---hHHHHHHHH------HHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHH
Q 019319 84 GK---EWRQILEEY------RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 154 (343)
Q Consensus 84 ~~---~~~~~l~~~------~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l 154 (343)
.. ...+.+..+ ..+..|++++|++++++.+.||..+++ |. .+++|+|++.. +.+.+.+.+
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~-l~---------~~~vP~T~v~~-~~~~~~~~~ 157 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQS-FP---------EEVRPTTHISR-NKEYIREFL 157 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHh-hc---------cCCCCCEEEeC-CHHHHHHHH
Confidence 42 233333322 224468999999999999999998754 33 14799998874 333333322
Q ss_pred HhcCCCC-cEEEecCCCCCCCCceeeEEEeChhh--Hhc----c--CCCeEEEecccC-CCcEEEEEEECCEEE------
Q 019319 155 LKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS--LKK----L--EPPLVLQEFVNH-GGVLFKVYIVGEAIK------ 218 (343)
Q Consensus 155 ~~~~l~f-P~VvKp~~a~GS~~sh~m~iv~~~~~--L~~----l--~~p~v~QEFI~h-~g~~~Kv~VIG~~v~------ 218 (343)
. ..++ |+|+||+.+ + ++.++.++.+.+. +.. + ..++++||||+. .+.++||+|+|++++
T Consensus 158 ~--~~~~~pvVvKPl~G--~-gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~ 232 (338)
T PRK12458 158 E--ESPGDKMILKPLQG--S-GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHY 232 (338)
T ss_pred H--HcCCCeEEEEECCC--C-CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccce
Confidence 2 3444 599999984 4 6788998876542 322 1 568999999986 467999999999999
Q ss_pred EEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---CCcEeEEEEEEeCC
Q 019319 219 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---GLRLFNLDIIREHG 295 (343)
Q Consensus 219 ~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l---Gl~l~GvDvi~~~~ 295 (343)
++.++.... ++|+.+ .+ .|...... ++ .+.++++|.++..+| ||.+.|+|+| +
T Consensus 233 ~a~~R~~~~---~d~RsN--------~~-~Gg~~~~~-------~l--~~~~~~ia~~~~~~l~~~GL~~~gVDli---~ 288 (338)
T PRK12458 233 AAMRRVPAG---GDVRSN--------VH-AGGSVVKH-------TL--TKEELELCEAIRPKLVRDGLFFVGLDIV---G 288 (338)
T ss_pred eEEEEecCC---CCeeec--------cc-CCCcccCc-------CC--CHHHHHHHHHHHHHHhhcCCeEEeEEEE---C
Confidence 775554321 233322 11 11111111 22 356799999999888 9999999999 2
Q ss_pred CCCeEEEEEecC-CC-CCccCCc-----chHHHHHhHHhhhcccchh
Q 019319 296 TRDQFYVIDINY-FP-GEVWENA-----GVRAHIYRLPIKPDTEPVQ 335 (343)
Q Consensus 296 ~g~~~~ViDVN~-fP-g~~~gv~-----~~~~~l~~~l~~~i~~~~~ 335 (343)
+ +|+|||. +| |+. ++. |+...+.+++.+.+..+..
T Consensus 289 -~---~l~EIN~~sp~g~~-~~~~~~g~d~a~~i~~~i~~~~~~~~~ 330 (338)
T PRK12458 289 -D---KLVEVNVFSPGGLT-RINKLNKIDFVEDIIEALERKVQRKSA 330 (338)
T ss_pred -C---EEEEEeCCCcchHH-HHHHHhCCCHHHHHHHHHHHHHhHHHH
Confidence 2 5899998 79 665 533 4667777777777755443
No 12
>PRK05246 glutathione synthetase; Provisional
Probab=99.89 E-value=2.7e-21 Score=186.56 Aligned_cols=252 Identities=14% Similarity=0.167 Sum_probs=167.6
Q ss_pred EEEEEecc---cccccccchHHHhhhhhcceEEEEeeCCCCCCc------------------------------CCCccE
Q 019319 31 VVGYALTS---KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (343)
Q Consensus 31 ~VGy~l~~---kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~------------------------------q~~fDv 77 (343)
.||+.|-| .|.++....+|.++|+++|+++..+++++.... ...||+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 56777764 466678888899999999999988888752110 024899
Q ss_pred EEEccCch-----hHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchH
Q 019319 78 VLHKLTGK-----EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD 152 (343)
Q Consensus 78 ilhK~t~~-----~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~ 152 (343)
|+.|.... .....+.+..+. .|++++|++++++.+.||+.+++++. ++|+|.+.. +.+.+.+
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~ 149 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAER-PGTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRA 149 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHh-CCCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHH
Confidence 99996432 112233333333 38999999999999999999877532 589998774 3333333
Q ss_pred HHHhcCCCCcEEEecCCCCCCCCceeeEEEeC-hhhH-------hcc-CCCeEEEecccCC-CcEEEEEEECCEEEE-EE
Q 019319 153 VVLKAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV-VR 221 (343)
Q Consensus 153 ~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~-~~~L-------~~l-~~p~v~QEFI~h~-g~~~Kv~VIG~~v~~-~~ 221 (343)
.+.. .+ |+|+||+.+ + ++.++..+.. ..++ ... ..|+++|+||+.. +.|+||+|+|+++++ +.
T Consensus 150 ~~~~--~~-~vVlKP~~G--~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~ 223 (316)
T PRK05246 150 FRAE--HG-DIILKPLDG--M-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYAL 223 (316)
T ss_pred HHHH--CC-CEEEEECCC--C-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhhee
Confidence 3333 33 999999984 4 6788888854 3222 222 4699999999864 679999999999887 65
Q ss_pred EecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEeCCCCC
Q 019319 222 RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGTRD 298 (343)
Q Consensus 222 R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~lGl~l~GvDvi~~~~~g~ 298 (343)
+|..+. ++|+++ ++.+| ...+. ++ .+...++|.+++ +.+|+.++|||++ |
T Consensus 224 ~R~~~~---~~~rtN--------~~~Gg-~~~~~-------~l--~~~~~~ia~~~~~~l~~~gl~~~GVDli-----~- 276 (316)
T PRK05246 224 ARIPAG---GETRGN--------LAAGG-RGEAT-------PL--TERDREICAAIGPELKERGLIFVGIDVI-----G- 276 (316)
T ss_pred EecCCC---CCcccC--------ccCCc-eEecc-------CC--CHHHHHHHHHHHHHHHHhCCCEEEEEEe-----C-
Confidence 443221 223322 12111 11111 12 345688998888 5779999999999 2
Q ss_pred eEEEEEecCC-C-CCccCCcc-----hHHHHHhHHhhhc
Q 019319 299 QFYVIDINYF-P-GEVWENAG-----VRAHIYRLPIKPD 330 (343)
Q Consensus 299 ~~~ViDVN~f-P-g~~~gv~~-----~~~~l~~~l~~~i 330 (343)
. ||+|||.+ | ||. +++. ....+.+++.+.+
T Consensus 277 ~-~l~EvN~~~p~~~~-~~~~~tg~~ia~~i~~~~~~~~ 313 (316)
T PRK05246 277 D-YLTEINVTSPTGIR-EIERLTGVDIAGMLWDAIEAKL 313 (316)
T ss_pred C-EEEEEeCCCchHHH-HHHHHhCCCHHHHHHHHHHHHh
Confidence 2 59999975 6 888 8864 4455555555543
No 13
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.87 E-value=1.6e-20 Score=179.43 Aligned_cols=232 Identities=16% Similarity=0.223 Sum_probs=160.8
Q ss_pred HHHhhhhhcceEEEEeeCCCCCC----cCCCccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-hhHHHHhcCHHHHHH
Q 019319 48 KLEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQ 121 (343)
Q Consensus 48 ~l~~~a~~~Gi~~v~ID~~~~l~----~q~~fDvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~~ 121 (343)
.+.++.++.|++++.||....+. +...+|++|..+.+... ...++.+.+. -|++++.+ +.++..|+||..+.+
T Consensus 23 ~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~ 101 (299)
T PRK14571 23 RVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYR 101 (299)
T ss_pred HHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHH
Confidence 36778889999999998776432 23579999999865311 1345665544 58999965 899999999999988
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCC
Q 019319 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPP 194 (343)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p 194 (343)
.|+. +|++|++..+... . ....++||+|+||..++ +|.++.+++|.++|.+. ..+
T Consensus 102 ~l~~--------~ip~p~~~~~~~~-~------~~~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~ 163 (299)
T PRK14571 102 FLKG--------TVEIPDFVEIKEF-M------KTSPLGYPCVVKPRREG---SSIGVFICESDEEFQHALKEDLPRYGS 163 (299)
T ss_pred HHhc--------CCCCCCEEEEech-h------hhhhcCCCEEEecCCCC---CcCCEEEECCHHHHHHHHHHHHhhCCc
Confidence 8872 6999999988421 1 12458999999998854 36789999999888642 357
Q ss_pred eEEEecccCCCcEEEEEEECCE----EEEEEEecCCCCccccCccCCceeeeccccccccc--CCCCCCCccccCCCChH
Q 019319 195 LVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRP 268 (343)
Q Consensus 195 ~v~QEFI~h~g~~~Kv~VIG~~----v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~ 268 (343)
+++||||+ |+++.|.|+|+. +....... + ..++|+|...+..+.. ..+..++++. .+
T Consensus 164 vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~-~---------~~~~~~~~~k~~~g~~~~~~p~~l~~~~-----~~ 226 (299)
T PRK14571 164 VIVQEYIP--GREMTVSILETEKGFEVLPILELR-P---------KRRFYDYVAKYTKGETEFILPAPLNPEE-----ER 226 (299)
T ss_pred EEEEcccc--ceEEEEEEEcCCCCeeeeceEEEe-c---------CCCccccccccCCCCeeEEeCCCCCHHH-----HH
Confidence 99999995 999999999863 22211111 0 1122333322211110 0122222221 34
Q ss_pred HHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchH
Q 019319 269 LLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVR 319 (343)
Q Consensus 269 ~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~ 319 (343)
.++++|.++.++||+ +++++|++.++ | ++||+|||..||++ ....++
T Consensus 227 ~i~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~-~~s~~~ 274 (299)
T PRK14571 227 LVKETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLT-ELSDLP 274 (299)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCC-ccCHHH
Confidence 688999999999997 68889999864 3 69999999999999 665443
No 14
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.87 E-value=3e-20 Score=191.37 Aligned_cols=237 Identities=15% Similarity=0.216 Sum_probs=156.9
Q ss_pred ccc--hHHHhhhhhcceEEEEeeCCCCCCcC-CCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHH
Q 019319 44 FLQ--PKLEGLARNKGILFVAIDQNRPLSDQ-GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (343)
Q Consensus 44 ~~~--~~l~~~a~~~Gi~~v~ID~~~~l~~q-~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~ 120 (343)
+.- +.++++|+++|++++.+|....+-.. ..-+.++.+ + ....++++.++..|.||..+.
T Consensus 240 l~~y~~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~---------------~--s~~~~~s~~ai~~~~DK~~tk 302 (547)
T TIGR03103 240 LNPYARIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCR---------------E--SLSELTSAVAMSLCDDKRLTR 302 (547)
T ss_pred cCHHHHHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEE---------------e--ccCCCCCHHHHHHhcCHHHHH
Confidence 444 67999999999999998754322210 011222211 1 223677999999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE-EeChhhHhcc-------C
Q 019319 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------E 192 (343)
Q Consensus 121 ~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i-v~~~~~L~~l-------~ 192 (343)
++|++. |||+|++.++. +.+++.+... .++ |+|+||..+ + ++.+|.+ +.++++|.+. .
T Consensus 303 ~lL~~a-------GIpVP~~~~~~-~~~~~~~~~~--~~G-~vVVKP~~G--~-~G~Gv~v~v~~~~eL~~a~~~a~~~~ 368 (547)
T TIGR03103 303 RLVSEA-------GLQVPEQQLAG-NGEAVEAFLA--EHG-AVVVKPVRG--E-QGKGISVDVRTPDDLEAAIAKARQFC 368 (547)
T ss_pred HHHHHc-------CcCCCCEEEEC-CHHHHHHHHH--HhC-CEEEEECCC--C-CCcCeEEecCCHHHHHHHHHHHHhcC
Confidence 999976 89999999985 3223333222 355 799999874 4 6889987 8999888652 5
Q ss_pred CCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCcc---------------CCce-----------------e
Q 019319 193 PPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST---------------SAGV-----------------F 240 (343)
Q Consensus 193 ~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~---------------~~g~-----------------~ 240 (343)
..+++|+|| .|.++|++|||++++++.++-.+.+..+...+ ..+. +
T Consensus 369 ~~vlvEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~ 446 (547)
T TIGR03103 369 DRVLLERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGL 446 (547)
T ss_pred CcEEEEEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCC
Confidence 589999999 59999999999999988655445432111000 0000 1
Q ss_pred eeccccccc---------ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 241 RFPRVSCAA---------ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 241 ~~~~~s~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
+++++...| +...++.......+ ..+...++|.++++++||.+.|||+|.++-++..++|||||..||+
T Consensus 447 ~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~--~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl 524 (547)
T TIGR03103 447 DLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQ--LHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPGL 524 (547)
T ss_pred CccccCCCCCEEEEecCCcccCCCeeEecccc--cCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCccc
Confidence 111111100 00011111000011 2456899999999999999999999997644446899999999999
Q ss_pred ccCCc
Q 019319 312 VWENA 316 (343)
Q Consensus 312 ~~gv~ 316 (343)
. +-+
T Consensus 525 ~-~h~ 528 (547)
T TIGR03103 525 A-NHE 528 (547)
T ss_pred c-ccC
Confidence 8 654
No 15
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=3.2e-20 Score=182.47 Aligned_cols=216 Identities=17% Similarity=0.259 Sum_probs=149.6
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceeeChh-hHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCC----
Q 019319 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---- 147 (343)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp~-~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~---- 147 (343)
.+|+++.-+.+.... ..+|.+.+. -|++.+.+. .+...|+||..+.++|+++ +||+|++..+....
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccccc
Confidence 589999888653111 355666543 689999988 5999999999999999976 89999998885321
Q ss_pred -CCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEE
Q 019319 148 -SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKV 219 (343)
Q Consensus 148 -~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~ 219 (343)
++..+. ....++||+|+||..+ || |.+|.++.++++|.. .+.++++||||. |+++.|.|+|+....
T Consensus 159 ~~~~~~~-~~~~lg~PviVKP~~~-Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~ 232 (364)
T PRK14570 159 KEGIKKD-IKEVLGYPVIVKPAVL-GS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIK 232 (364)
T ss_pred hHHHHHH-HHHhcCCCEEEEeCCC-CC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCce
Confidence 111111 1246899999999874 44 668999999988865 256799999995 999999999985211
Q ss_pred EEEecCCCCccccCcc-CCceeeecccccc--ccc---CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019319 220 VRRFSLPDVTKQDLST-SAGVFRFPRVSCA--AAS---ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIR 292 (343)
Q Consensus 220 ~~R~slp~~~~~~~~~-~~g~~~~~~~s~~--~~~---~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~ 292 (343)
+ +|. +++.. ..++|+|...+.. +.. ..++.++++. .+.++++|.++.++||+. ++.+|+++
T Consensus 233 v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~-----~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 233 I----FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKH-----LLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred E----eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 1 111 11111 1235666543321 111 1233333322 467899999999999995 55699999
Q ss_pred eCCCCCeEEEEEecCCCCCccCCcc
Q 019319 293 EHGTRDQFYVIDINYFPGEVWENAG 317 (343)
Q Consensus 293 ~~~~g~~~~ViDVN~fPg~~~gv~~ 317 (343)
+.++| ++||+|||..||++ ....
T Consensus 301 ~~~~g-~~yvlEiNt~PG~t-~~S~ 323 (364)
T PRK14570 301 EKDTG-LIYLNEINTIPGFT-DISM 323 (364)
T ss_pred ECCCC-cEEEEEeeCCCCCC-cccH
Confidence 85334 69999999999998 6543
No 16
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.85 E-value=7.3e-20 Score=177.80 Aligned_cols=237 Identities=17% Similarity=0.201 Sum_probs=161.1
Q ss_pred HHhhhhhcceEEEEeeCCCC------------CC---------------cCC--CccEEEEccCchhH-HHHHHHHHHhC
Q 019319 49 LEGLARNKGILFVAIDQNRP------------LS---------------DQG--PFDIVLHKLTGKEW-RQILEEYRQTH 98 (343)
Q Consensus 49 l~~~a~~~Gi~~v~ID~~~~------------l~---------------~q~--~fDvilhK~t~~~~-~~~l~~~~~~~ 98 (343)
..++.++.|+++.+||.++. +. +.. .+|+++.=+.+... -..++.+.+.
T Consensus 27 v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gedg~iq~lle~- 105 (333)
T PRK01966 27 VLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDDNDKEDLSLLILPSGGSEEVDVVFPVLHGPPGEDGTIQGLLEL- 105 (333)
T ss_pred HHHHhcccCCEEEEEEECCCCCEeeccchhhhcccccccccccchhccccccCccCCEEEEccCCCCCCCcHHHHHHHH-
Confidence 44555667888888877653 00 012 58999876644211 1245666543
Q ss_pred CCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC--chHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS--IPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~--~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
.|++.+-+ +.+...++||..+.++|++. +||+|++..+.+.... ..+. ....++||+|+||..++ |
T Consensus 106 ~gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~-~~~~~~~P~vVKP~~~g-s-- 174 (333)
T PRK01966 106 LGIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEASLAE-IEAKLGLPVFVKPANLG-S-- 174 (333)
T ss_pred cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchhhHHH-HHHhcCCCEEEEeCCCC-C--
Confidence 57888765 78999999999999999976 9999999998543221 1111 23468999999998854 3
Q ss_pred ceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccc
Q 019319 176 SHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 248 (343)
Q Consensus 176 sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~ 248 (343)
|.++.++.+.++|.+ .+.++++|+||+ |+++.|.|+|+... .+|. +++....++|+|...+..
T Consensus 175 S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~-----~~~~---~ei~~~~~~~d~~~ky~~ 244 (333)
T PRK01966 175 SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPK-----ASVP---GEIVKPDDFYDYEAKYLD 244 (333)
T ss_pred ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCe-----Eccc---EEEecCCceEcHHHccCC
Confidence 678999999998865 367899999995 89999999996311 1111 111112245666544322
Q ss_pred ccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 249 AAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 249 ~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
+.. ..++.++++. .+.++++|.++.++||+ +++.+|++.+. +| ++||+|||..||++ ..
T Consensus 245 ~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~~~vlEiNt~Pg~t-~~ 306 (333)
T PRK01966 245 GSAELIIPADLSEEL-----TEKIRELAIKAFKALGCSGLARVDFFLTE-DG-EIYLNEINTMPGFT-PI 306 (333)
T ss_pred CCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEeeCCCCCC-cc
Confidence 211 1233333222 45789999999999998 56679999975 35 68999999999998 54
No 17
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.85 E-value=1.1e-19 Score=173.78 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=157.6
Q ss_pred HHhhhhhcceEEEEeeCCC-CCC---cCCCccEEEEccCchhH-HHHHHHHHHhCCCceeeC-hhhHHHHhcCHHHHHHH
Q 019319 49 LEGLARNKGILFVAIDQNR-PLS---DQGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQC 122 (343)
Q Consensus 49 l~~~a~~~Gi~~v~ID~~~-~l~---~q~~fDvilhK~t~~~~-~~~l~~~~~~~p~v~ViD-p~~ai~~~~dR~~~~~~ 122 (343)
..++.++.|++++.+|.+. .+. ....+|+++.=+.+... ...++...+. -|++++. ++.++..|+||..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-LEIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHHCHHHHHHH
Confidence 5567788899999999863 211 13478988876543211 1345555543 3777764 66999999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc------CCCeE
Q 019319 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLV 196 (343)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l------~~p~v 196 (343)
|+++ +||+|++..+.... . ....++||+|+||..+ || |.++.++.++++|... ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~~----~--~~~~~~~P~vVKP~~g-gs--s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDKL----V--AEDEISFPVAVKPSSG-GS--SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchhh----h--hHhhcCCCEEEEeCCC-CC--CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 9976 89999998875211 1 2346899999999884 33 6889999999988752 24799
Q ss_pred EEecccCCCcEEEEEEECCEEEE-EEEecCCCCccccCccCCceeeeccccccccc-CCCCCCCccccCCCChHHHHHHH
Q 019319 197 LQEFVNHGGVLFKVYIVGEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS-ADDADLDPCVAELPPRPLLERLA 274 (343)
Q Consensus 197 ~QEFI~h~g~~~Kv~VIG~~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~-~~~~~~~~~~~~~p~~~~~~~lA 274 (343)
+|||| .|++|.|.|+|+.+.. +..... ..+|++......... ..+..+.+.. .+.++++|
T Consensus 170 vEefI--~G~E~tv~vl~~~~~~~~~i~~~-----------~~~~~~~~k~~~~~~~~~P~~l~~~~-----~~~i~~~a 231 (296)
T PRK14569 170 IEQWV--TGKEITVAIVNDEVYSSVWIEPQ-----------NEFYDYESKYSGKSIYHSPSGLCEQK-----ELEVRQLA 231 (296)
T ss_pred EEccc--ccEEEEEEEECCcCcceEEEecC-----------CCcCChhhccCCCcEEEeCCCCCHHH-----HHHHHHHH
Confidence 99999 5999999999987432 222111 112222221111000 0122222111 35789999
Q ss_pred HHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCccCCcch
Q 019319 275 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEVWENAGV 318 (343)
Q Consensus 275 ~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~ 318 (343)
.++.++||+. +++||++.+. +| ++||+|||..||++ .-..+
T Consensus 232 ~~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t-~~s~~ 273 (296)
T PRK14569 232 KKAYDLLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMT-DNSLS 273 (296)
T ss_pred HHHHHHhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCC-CcCHH
Confidence 9999999975 5669999975 34 69999999999998 44433
No 18
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.85 E-value=1.8e-19 Score=175.70 Aligned_cols=211 Identities=19% Similarity=0.232 Sum_probs=145.8
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCch
Q 019319 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (343)
Q Consensus 74 ~fDvilhK~t~~~~-~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (343)
.+|+++.-+.+... -..++.+.+. .|++.+ .++.+...|+||..+.++|+++ +|++|++.++.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh-
Confidence 47988877765211 1356666643 678877 5678999999999999999976 89999999986332 11
Q ss_pred HHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEE--EEEEE
Q 019319 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAI--KVVRR 222 (343)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g~~~Kv~VIG~~v--~~~~R 222 (343)
....++||+|+||..+ || |.++.++.+.++|.+ .+..+++|||| .|+++.|.|+|+.- .+..
T Consensus 160 ---~~~~l~~P~iVKP~~~-gs--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I--~G~E~sv~vl~~~~~~~~~~- 230 (343)
T PRK14568 160 ---DAATLTYPVFVKPARS-GS--SFGVSKVNSADELDYAIESARQYDSKVLIEEAV--VGSEVGCAVLGNGADLVVGE- 230 (343)
T ss_pred ---hhhhcCCCEEEEeCCC-CC--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCc--CCEEEEEEEEcCCCCcceec-
Confidence 1346899999999885 44 689999999999864 35689999999 48999999998741 1110
Q ss_pred ecCCCCccccCccCCceeeecccccc--cc----cCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCC
Q 019319 223 FSLPDVTKQDLSTSAGVFRFPRVSCA--AA----SADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHG 295 (343)
Q Consensus 223 ~slp~~~~~~~~~~~g~~~~~~~s~~--~~----~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~ 295 (343)
...+....++|+++..... +. ...++.++++. .+.++++|.++.++||+ .++.+|++.+.
T Consensus 231 -------~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~- 297 (343)
T PRK14568 231 -------VDQIRLSHGFFRIHQENEPEKGSENSTIIVPADISAEE-----RSRVQETAKAIYRALGCRGLARVDMFLQE- 297 (343)
T ss_pred -------ceEEecCCCccchhhhhccccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCcEEEEEEEEeC-
Confidence 0001112345555432211 00 01222222221 35689999999999999 67779999985
Q ss_pred CCCeEEEEEecCCCCCccCCcch
Q 019319 296 TRDQFYVIDINYFPGEVWENAGV 318 (343)
Q Consensus 296 ~g~~~~ViDVN~fPg~~~gv~~~ 318 (343)
+| ++||+|||..||++ ...-|
T Consensus 298 ~g-~~~llEINt~Pg~t-~~S~~ 318 (343)
T PRK14568 298 DG-TVVLNEVNTLPGFT-SYSRY 318 (343)
T ss_pred CC-CEEEEEeeCCCCCC-ccCHH
Confidence 45 68999999999998 65433
No 19
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.84 E-value=1.3e-19 Score=192.20 Aligned_cols=231 Identities=18% Similarity=0.291 Sum_probs=151.8
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhcc
Q 019319 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN 127 (343)
Q Consensus 48 ~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~ 127 (343)
.++++|.++|+.+..++-.. + +|=-.+. .. +.... .+ .--++..++..+.||..+.++|++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~~-~---------v~lgyG~-~~----~~i~~-~~-~~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDGS-L---------VQLGYGK-YQ----RRIQA-AE-TDQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCCC-e---------EecCCcH-HH----HHHHH-hc-CCCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 58899999999998876433 1 1111221 11 12211 11 2377889999999999999999976
Q ss_pred ccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE-EeChhhHhcc-------CCCeEEEe
Q 019319 128 LSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPPLVLQE 199 (343)
Q Consensus 128 l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i-v~~~~~L~~l-------~~p~v~QE 199 (343)
+||+|++..+. +.+++.+. ...++||+|+||.. |+ ++.+|.+ +.++++|.+. ..++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~--a~~iG~PvVVKP~~--G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEA--AEEIGYPVVVKPLD--GN-HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHH--HHHcCCCEEEEECC--CC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 89999999885 22233332 34689999999987 44 5789998 8999887652 56899999
Q ss_pred cccCCCcEEEEEEECCEEEEEEEecCCCCccccCcc--------C----Cce-----------------------eeecc
Q 019319 200 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S----AGV-----------------------FRFPR 244 (343)
Q Consensus 200 FI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~--------~----~g~-----------------------~~~~~ 244 (343)
||+ |++|||+|+|++++++.|+..+.+..+...+ + .|. +++++
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~s 371 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDS 371 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccc
Confidence 995 9999999999999999887656442111000 0 000 11111
Q ss_pred cccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC----CCCeEEEEEecCCCCC
Q 019319 245 VSCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG----TRDQFYVIDINYFPGE 311 (343)
Q Consensus 245 ~s~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~----~g~~~~ViDVN~fPg~ 311 (343)
+...|. .+.++.......+. .+...++|.++++++|++++|||++.++- ......|||||..||+
T Consensus 372 V~~~G~~v~l~~~~N~s~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi 449 (727)
T PRK14016 372 VPPKGEKVYLRRNANLSTGGTAIDVTDEV--HPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGL 449 (727)
T ss_pred cCCCCCEEEEeccccccCCCeeEeccccc--CHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcch
Confidence 111110 00011100011112 35579999999999999999999999641 0113689999999999
Q ss_pred c
Q 019319 312 V 312 (343)
Q Consensus 312 ~ 312 (343)
.
T Consensus 450 ~ 450 (727)
T PRK14016 450 R 450 (727)
T ss_pred h
Confidence 8
No 20
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.84 E-value=2e-19 Score=190.80 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=156.3
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCcCC---CccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHH
Q 019319 43 SFLQPKLEGLARNKGILFVAIDQNRPLSDQG---PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (343)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~---~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~ 119 (343)
.++.+.++++|.++||.+..+|.+..+...+ ..+.++. -.....|+..+...+.||..+
T Consensus 431 ~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 431 ELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred ChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHH
Confidence 3567779999999999999999876443321 1222211 134678899999999999999
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEe---ChhhHhc------
Q 019319 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK------ 190 (343)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~---~~~~L~~------ 190 (343)
.++|++. |||+|++.++. +.+++..... .-.+||+|+||..+ + +|.++.++. +.+++.+
T Consensus 493 k~lL~~~-------GIpvP~~~~~~-~~e~a~~~~~-~~~g~PvVVKP~~g--~-~G~GV~~~~~~~~~eel~~A~~~a~ 560 (752)
T PRK02471 493 KKILAEA-------GFPVPAGDEFT-SLEEALADYS-LFADKAIVVKPKST--N-FGLGISIFKEPASLEDYEKALEIAF 560 (752)
T ss_pred HHHHHHC-------CcCCCCEEEEc-CHHHHHHHHH-HhcCCCEEEEECCC--C-CcCCeEEecCcCCHHHHHHHHHHHH
Confidence 9999975 89999999885 2222222222 22489999999884 3 577888864 4555543
Q ss_pred -cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCcc--------CC----c--e----------------
Q 019319 191 -LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA----G--V---------------- 239 (343)
Q Consensus 191 -l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~--------~~----g--~---------------- 239 (343)
.+..+++|||| .|++|+|+|||++++.+.++..+++..++..+ +. | .
T Consensus 561 ~~~~~vlVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~ 638 (752)
T PRK02471 561 REDSSVLVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLM 638 (752)
T ss_pred hcCCcEEEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHH
Confidence 25679999999 59999999999999988666656655332111 10 0 0
Q ss_pred -----eeeccccccccc---------CCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC------CCCe
Q 019319 240 -----FRFPRVSCAAAS---------ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------TRDQ 299 (343)
Q Consensus 240 -----~~~~~~s~~~~~---------~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~------~g~~ 299 (343)
++++++...|.. +.+++.. .+.. ...+...++|.++++++|+.++|||++.++- ....
T Consensus 639 L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~-dvtd-~ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~ 716 (752)
T PRK02471 639 LKQQGLTPDSIPKKGEIVYLRENSNISTGGDSI-DMTD-DMDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPN 716 (752)
T ss_pred HHHcCCCccccCCCCCEEEecCCCccCCCCeeE-eccc-ccCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCC
Confidence 111222111100 0011000 0111 1235679999999999999999999999651 1114
Q ss_pred EEEEEecCCCCCc
Q 019319 300 FYVIDINYFPGEV 312 (343)
Q Consensus 300 ~~ViDVN~fPg~~ 312 (343)
+.|||||..||+.
T Consensus 717 ~~IiEvN~~P~l~ 729 (752)
T PRK02471 717 YGIIELNFNPAMY 729 (752)
T ss_pred eEEEEecCCCchh
Confidence 7899999999974
No 21
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=4.6e-19 Score=173.19 Aligned_cols=215 Identities=17% Similarity=0.192 Sum_probs=142.9
Q ss_pred CccEEEE---ccCchhHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-
Q 019319 74 PFDIVLH---KLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS- 148 (343)
Q Consensus 74 ~fDvilh---K~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~- 148 (343)
.+|+++. .-.++. ..++.+.+. -|++++ .++.++..|+||..+.+.|+++ +|++|++..+.+...
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 4677554 333322 245555543 478887 4588999999999999999975 899999999853221
Q ss_pred -CchHHH-HhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECC----
Q 019319 149 -SIPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE---- 215 (343)
Q Consensus 149 -~~~~~l-~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~---- 215 (343)
...+.. ....++||+|+||..+ || |.+++++.++++|... +.++++|||| .|++|.|.|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~g-gs--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g 232 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVEG-GS--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGG 232 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCC
Confidence 111111 1246899999999884 33 6899999999988652 5689999999 599999999973
Q ss_pred EEEEEEEecCCCCccccCccCCceeeeccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019319 216 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIR 292 (343)
Q Consensus 216 ~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~ 292 (343)
++... .+|-. ++....++|+|...+..+.. ..++.+++++ .+.++++|.++.++||+. +.++|+++
T Consensus 233 ~~~~~---~l~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvD~~~ 301 (347)
T PRK14572 233 KRNPI---ALPAT---EIVPGGEFFDFESKYKQGGSEEITPARISDQE-----MKRVQELAIRAHESLGCKGYSRTDFII 301 (347)
T ss_pred CCCce---ecccE---EEecCCCccCHHHccCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhCCcceeEEEEEE
Confidence 21100 11110 11111245565544432211 1233333222 357899999999999987 55699999
Q ss_pred eCCCCCeEEEEEecCCCCCccCCcch
Q 019319 293 EHGTRDQFYVIDINYFPGEVWENAGV 318 (343)
Q Consensus 293 ~~~~g~~~~ViDVN~fPg~~~gv~~~ 318 (343)
++ | .+||+|||..||++ ....+
T Consensus 302 ~~--~-~~~vlEiNt~PG~t-~~S~~ 323 (347)
T PRK14572 302 VD--G-EPHILETNTLPGMT-ETSLI 323 (347)
T ss_pred EC--C-cEEEEeeeCCCCCC-cccHH
Confidence 63 3 68999999999999 65443
No 22
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.82 E-value=2.2e-19 Score=183.12 Aligned_cols=265 Identities=21% Similarity=0.271 Sum_probs=190.9
Q ss_pred CCceEEEEEEecccccccccchHHHh-hhhhcceEEEE----eeCCCCCCcCCCccEEEEccCchhHHHHHHHHHH-hCC
Q 019319 26 QSKLVVVGYALTSKKTKSFLQPKLEG-LARNKGILFVA----IDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ-THP 99 (343)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~~~~~l~~-~a~~~Gi~~v~----ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~-~~p 99 (343)
..+..+||.|...||.+|=-.....+ .+.-.=++++. +-++.|.+.+.-+|++|--.+..--....++|++ ++|
T Consensus 37 ~~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnP 116 (1018)
T KOG1057|consen 37 PERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP 116 (1018)
T ss_pred CccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCC
Confidence 34446999999999988765544333 32222344432 4466788888999999977766545677888987 556
Q ss_pred CceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-chHHHH---------hcCCCCcEEEecCC
Q 019319 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-IPDVVL---------KAGLTLPLVAKPLV 169 (343)
Q Consensus 100 ~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~-~~~~l~---------~~~l~fP~VvKp~~ 169 (343)
+|||.+.-...++||...|++|+.. +|++|++.++.++..+ ....+. -.-+.-|+|-||+.
T Consensus 117 --FviNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs 187 (1018)
T KOG1057|consen 117 --FVINDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVS 187 (1018)
T ss_pred --eeeccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCC
Confidence 8999999999999999999999965 9999999999765421 111111 12345599999998
Q ss_pred CCCCCCceeeEEEeChhh-------Hhcc---------------CCCeEEEecccCCCcEEEEEEECCEEEEE-EEecCC
Q 019319 170 ADGSAKSHELSLAYDQYS-------LKKL---------------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLP 226 (343)
Q Consensus 170 a~GS~~sh~m~iv~~~~~-------L~~l---------------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~-~R~slp 226 (343)
| +-|+++|.+..+. ++++ ...++.+||++++|.|.|||.||..+..+ .|+| |
T Consensus 188 ~----EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKS-P 262 (1018)
T KOG1057|consen 188 A----EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-P 262 (1018)
T ss_pred c----ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccC-c
Confidence 5 7999999998732 3332 23589999999999999999999998766 7887 5
Q ss_pred CCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEec
Q 019319 227 DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDIN 306 (343)
Q Consensus 227 ~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN 306 (343)
.++.-.-++.+| ..... | ..+ .+..+.+|.+++-+++..++|||+++.+ | .-||||||
T Consensus 263 vvDGkV~Rns~G--------------KEvRY-p--v~L--s~~EK~iA~KVciAF~Q~VCGFDLLRa~--G-~SYVcDVN 320 (1018)
T KOG1057|consen 263 VVDGKVERNSDG--------------KEVRY-P--VIL--NSSEKQIARKVCIAFKQTVCGFDLLRAN--G-KSYVCDVN 320 (1018)
T ss_pred cccceeeecCCC--------------ceeec-e--eec--ChhhHHHHhHHHhhccccccchHHhhcC--C-ceEEEecc
Confidence 433100011111 01111 0 112 2345889999999999999999999976 4 57999999
Q ss_pred CCCCCccCCcchHHHHHhHHh
Q 019319 307 YFPGEVWENAGVRAHIYRLPI 327 (343)
Q Consensus 307 ~fPg~~~gv~~~~~~l~~~l~ 327 (343)
.|.-.+ .--.|+...+..|.
T Consensus 321 GfSFVK-ns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 321 GFSFVK-NSNKYYDDCAKILG 340 (1018)
T ss_pred ceeeee-cchhhhHHHHHHHh
Confidence 999999 88888877777666
No 23
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.82 E-value=3.5e-20 Score=168.33 Aligned_cols=164 Identities=20% Similarity=0.326 Sum_probs=111.7
Q ss_pred CccCCcEEEEecCCCCchH-HHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCC
Q 019319 134 KVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG 205 (343)
Q Consensus 134 ~I~~P~~~~~~~~~~~~~~-~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g 205 (343)
||+||+++++.+.+..... ......++||+|+||..+ || |.|+.+|++.++|.+ ++.++++|||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 9999999999754321110 012356999999999874 66 778999999998875 36789999999 79
Q ss_pred cEEEEEEECCE---EEEEEEecCCCCccccCccCCceeeecccccc--c--ccCCCCCCCccccCCCChHHHHHHHHHHH
Q 019319 206 VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--A--ASADDADLDPCVAELPPRPLLERLAKELR 278 (343)
Q Consensus 206 ~~~Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~--~--~~~~~~~~~~~~~~~p~~~~~~~lA~~l~ 278 (343)
++|.|.|+|+. +.-.... ....++|+|+..... + ....++.+++.. .+.++++|.++.
T Consensus 81 ~E~tv~vl~~~~~~~~~~~ei----------~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~-----~~~i~~~a~~a~ 145 (203)
T PF07478_consen 81 REFTVGVLGNGEPRVLPPVEI----------VFPSEFYDYEAKYQPADSETEYIIPADLSEEL-----QEKIKEIAKKAF 145 (203)
T ss_dssp EEEEEEEEESSSTEEEEEEEE----------EESSSEEEHHHHHSGCCSCEEEESS-SS-HHH-----HHHHHHHHHHHH
T ss_pred cceEEEEEecCCcccCceEEE----------EcCCCceehhheeccCCCceEEEecCCCCHHH-----HHHHHHHHHHHH
Confidence 99999999954 3322222 223367888776532 1 111333333332 467899999999
Q ss_pred HHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCccCCcchHH
Q 019319 279 RQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEVWENAGVRA 320 (343)
Q Consensus 279 ~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~ 320 (343)
++||+.-++ ||+..++ +| ++|++|||..||+. ....++.
T Consensus 146 ~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt-~~S~~p~ 185 (203)
T PF07478_consen 146 KALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLT-PTSLFPR 185 (203)
T ss_dssp HHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-S-TTSHHHH
T ss_pred HHHcCCCceeEEEEecc-CC-ceEEEeccCccccc-CCCHHHH
Confidence 999998888 9999985 45 79999999999999 6555543
No 24
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.80 E-value=1.4e-18 Score=187.57 Aligned_cols=232 Identities=16% Similarity=0.251 Sum_probs=151.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc--CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSD--QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQC 122 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~--q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~ 122 (343)
+.+.++++|.++||.+..+|-.. +-+ +|..--++.- ...=.|+..++..+.||..+.++
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~-~~qlg~g~~~~~~~~------------------~~t~~~s~ia~~ia~DK~~tk~l 220 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGS-LVQLGYGSRQKRIQA------------------TETDRTSAIAVEIACDKDLTKEI 220 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCC-EEEecCCCEEEEEEe------------------ecCCCCcHHHHHHHcCHHHHHHH
Confidence 44568889999999999887532 322 1211111110 11235677899999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE-EeChhhHhcc-------CCC
Q 019319 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPP 194 (343)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i-v~~~~~L~~l-------~~p 194 (343)
|++. +||+|++.++. +.+++.+. ...++||+|+||..+ + .+.++.+ +.++++|.+. ..+
T Consensus 221 L~~~-------GIpvP~~~~~~-s~~ea~~~--~~~ig~PvVVKP~~g--~-~G~GV~l~v~s~~el~~a~~~a~~~~~~ 287 (864)
T TIGR02068 221 LSDA-------GVPVPEGTVVQ-SAEDAWEA--AQDLGYPVVIKPYDG--N-HGRGVTINILTRDEIESAYEAAVEESSG 287 (864)
T ss_pred HHHc-------CcCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEECCC--C-CccCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 9976 89999999885 22223332 245799999999874 3 5788998 8999887652 568
Q ss_pred eEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCcc--------C------Cc---e------------------
Q 019319 195 LVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AG---V------------------ 239 (343)
Q Consensus 195 ~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~--------~------~g---~------------------ 239 (343)
+++|+|| .|++|||+|+|++++++.++-.|++.-++..+ | +| .
T Consensus 288 vlVEefI--~G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g 365 (864)
T TIGR02068 288 VIVERFI--TGRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQG 365 (864)
T ss_pred EEEEEec--cCCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcC
Confidence 9999999 49999999999999988777656543221110 0 00 0
Q ss_pred eeecccccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCC----CCeEEEEEec
Q 019319 240 FRFPRVSCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGT----RDQFYVIDIN 306 (343)
Q Consensus 240 ~~~~~~s~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~----g~~~~ViDVN 306 (343)
++++++...|. .+.++.......++ .+...++|.++++++||+++|||++.++-+ +..+.|||||
T Consensus 366 ~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN 443 (864)
T TIGR02068 366 LTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEI--HPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVN 443 (864)
T ss_pred CCccccCCCCCEEEEeccccccCCCceEeccccc--CHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEc
Confidence 01111111110 00011100001122 345799999999999999999999986311 1136899999
Q ss_pred CCCCCc
Q 019319 307 YFPGEV 312 (343)
Q Consensus 307 ~fPg~~ 312 (343)
..||+.
T Consensus 444 ~~p~~~ 449 (864)
T TIGR02068 444 AAPGLR 449 (864)
T ss_pred CCcchh
Confidence 999986
No 25
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.77 E-value=1.2e-17 Score=175.48 Aligned_cols=238 Identities=14% Similarity=0.181 Sum_probs=154.9
Q ss_pred ccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHH
Q 019319 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (343)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~ 121 (343)
-.++.+.|+..|.++| .+..+|....+- +++.. .-++|+.+ ..+.-.|+..+...|.||..+-+
T Consensus 418 ~~~stQ~Li~~Ai~rG-~v~vlD~~~~~~----------~L~~g----~~~~~v~~-~s~ts~tS~ia~~i~~DK~~TK~ 481 (737)
T TIGR01435 418 MELSTQWKLFDVIQKG-KVEILDEAEQFL----------RLQKG----DHIEYVKN-ANMTSKDNYVSPLIMENKVVTKK 481 (737)
T ss_pred ccHhHHHHHHHHHHCC-CEEEeCCCCCee----------EeecC----CcceEEec-ceecCCccHHHHHHhcCHHHHHH
Confidence 3577788999999999 888888876433 33211 00122211 13456788899999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCC-CCcEEEecCCCCCCCCceeeEEEeC---hhhHhc-------
Q 019319 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAYD---QYSLKK------- 190 (343)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a~GS~~sh~m~iv~~---~~~L~~------- 190 (343)
+|++. |||||++.++.+.. ...+.. ..+ +||+|+||..++ .|.|+.++.+ .+++.+
T Consensus 482 iL~~a-------GIPVP~g~~~~~~~-~a~~~~--~~~~g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~~ 548 (737)
T TIGR01435 482 VLAEA-------GFRVPFGDEFSSQA-LALEAF--SLFENKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAFS 548 (737)
T ss_pred HHHHc-------CcCCCCEEEECCHH-HHHHHH--HHhcCCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHHh
Confidence 99975 89999999885321 222211 223 799999998843 4778888876 455543
Q ss_pred cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCcc--------C------Cce-----------------
Q 019319 191 LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AGV----------------- 239 (343)
Q Consensus 191 l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~--------~------~g~----------------- 239 (343)
.+..+++|||| .|++|||+|||+++.++.++..+++..++..+ + .+.
T Consensus 549 ~~~~VLVEefI--~G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~ 626 (737)
T TIGR01435 549 EDSSVIIEEFL--PGTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLK 626 (737)
T ss_pred cCCeEEEEecc--cCCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHH
Confidence 25579999999 59999999999999988776656665332111 0 010
Q ss_pred ---eeeccccccccc---------CCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCC------CeEE
Q 019319 240 ---FRFPRVSCAAAS---------ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTR------DQFY 301 (343)
Q Consensus 240 ---~~~~~~s~~~~~---------~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g------~~~~ 301 (343)
+.++++...|.. +.+++......++ .+..+++|.++++++|+.++|||+|.++-+. ..+.
T Consensus 627 ~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~i--hp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~~ 704 (737)
T TIGR01435 627 EQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEM--DDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIWG 704 (737)
T ss_pred HcCCCccccCCCCCEEEEcCCCcccCCCceEeccccc--CHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccceE
Confidence 011111111100 0011100000122 3557999999999999999999999864211 1378
Q ss_pred EEEecCCCCCc
Q 019319 302 VIDINYFPGEV 312 (343)
Q Consensus 302 ViDVN~fPg~~ 312 (343)
|||||..||+.
T Consensus 705 iiEvN~~P~l~ 715 (737)
T TIGR01435 705 VIEANFNPAMH 715 (737)
T ss_pred EEEEcCCcchh
Confidence 99999999965
No 26
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.77 E-value=3.1e-17 Score=157.75 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=123.7
Q ss_pred eeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCC-cEEEecCCCCCCCCceeeEE
Q 019319 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 103 ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~GS~~sh~m~i 181 (343)
-.|+.+....|.||+.+.++|++. +||+|.|.++.+..... +.+...--++ |+|+||+. || ++.++.+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~a-------glpvP~T~~~~s~~~~~-~~l~~~~~~~~~VVVKPl~--Gs-~GrGI~~ 93 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAA-------GITVPELYGVIHNQAEV-KTIHNIVKDHPDFVIKPAQ--GS-GGKGILV 93 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHc-------CCCCCCEEEecCchhhH-HHHHHHHccCCCEEEEECC--CC-CccCeEE
Confidence 457778889999999999999975 89999999885333222 2222221256 69999998 56 8999999
Q ss_pred EeChhhH---------------h-----------ccCCC--eEEEecccCC-----------CcEEEEEEECCEEEEEEE
Q 019319 182 AYDQYSL---------------K-----------KLEPP--LVLQEFVNHG-----------GVLFKVYIVGEAIKVVRR 222 (343)
Q Consensus 182 v~~~~~L---------------~-----------~l~~p--~v~QEFI~h~-----------g~~~Kv~VIG~~v~~~~R 222 (343)
+.+.++. . .+..+ .++|||+..+ ..++||+|+|+++.++++
T Consensus 94 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~ 173 (317)
T TIGR02291 94 ITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMM 173 (317)
T ss_pred EEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEE
Confidence 9765321 1 12222 5666776332 379999999999987754
Q ss_pred e-cCC--CCccccCccCCcee---eeccc--ccccccCCCCCCCccc------cCCCChHHHHHHHHHHHHHhCCcEeEE
Q 019319 223 F-SLP--DVTKQDLSTSAGVF---RFPRV--SCAAASADDADLDPCV------AELPPRPLLERLAKELRRQLGLRLFNL 288 (343)
Q Consensus 223 ~-slp--~~~~~~~~~~~g~~---~~~~~--s~~~~~~~~~~~~~~~------~~~p~~~~~~~lA~~l~~~lGl~l~Gv 288 (343)
+ +.. +|.+|- . ..|.. +..+. ...+.........|.. .+.|..+++.++|.++.+++|+.++|+
T Consensus 174 R~~~~~~~~~tN~-~-~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~Gv 251 (317)
T TIGR02291 174 RLPTRASDGKANL-H-QGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGV 251 (317)
T ss_pred EccCccCCccccc-c-cCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEE
Confidence 4 322 344331 0 01111 11100 0000000011111110 134545778999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCCCc
Q 019319 289 DIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 289 Dvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
|++++.+. .++|+|||..|||+
T Consensus 252 Dii~~~~~--g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 252 DMVLDKEE--GPLVLELNARPGLA 273 (317)
T ss_pred EEEEeCCC--CEEEEEeCCCCCCC
Confidence 99997533 48999999999987
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.74 E-value=3.5e-16 Score=168.27 Aligned_cols=262 Identities=14% Similarity=0.111 Sum_probs=172.6
Q ss_pred eEEEEEEec-ccccccccchH---HHhhhhhcceEEEEeeCCCC--C--C---------------------c-CCCccEE
Q 019319 29 LVVVGYALT-SKKTKSFLQPK---LEGLARNKGILFVAIDQNRP--L--S---------------------D-QGPFDIV 78 (343)
Q Consensus 29 ~~~VGy~l~-~kK~~~~~~~~---l~~~a~~~Gi~~v~ID~~~~--l--~---------------------~-q~~fDvi 78 (343)
..+|+..+= .+-.+..+..+ ..++.++.|+++++||.++. . . + ...+|++
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 530 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVV 530 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEE
Confidence 344444432 23344444333 55566778999999988762 0 0 0 0347888
Q ss_pred EEccCchhH-HHHHHHHHHhCCCceeeC-hhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCC--CCchHHH
Q 019319 79 LHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SSIPDVV 154 (343)
Q Consensus 79 lhK~t~~~~-~~~l~~~~~~~p~v~ViD-p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~--~~~~~~l 154 (343)
+.=+.+... -..+|.+.+. -|++.+- ++.+...++||..+-++|++. +|++|++..+.... ......+
T Consensus 531 f~~lhG~~gedg~iq~~le~-~gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~~~ 602 (809)
T PRK14573 531 LPILHGPFGEDGTMQGFLEI-IGKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPELCL 602 (809)
T ss_pred EEcCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHHHH
Confidence 877654211 1356666643 4677654 778899999999999999975 89999999885321 0111101
Q ss_pred --HhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecC
Q 019319 155 --LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSL 225 (343)
Q Consensus 155 --~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~sl 225 (343)
....++||+|+||..+ || |.|+.+|.++++|.+ .+.++++||||. +|+++.|.|+|+.-.... .+
T Consensus 603 ~~~~~~lg~P~iVKP~~~-Gs--S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~- 676 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHL-GS--SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IA- 676 (809)
T ss_pred HHHHHhcCCCEEEeeCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ec-
Confidence 2346899999999885 44 579999999998865 257899999985 579999999998521000 01
Q ss_pred CCCccccCccCCceeeecccccc-ccc----CCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCe
Q 019319 226 PDVTKQDLSTSAGVFRFPRVSCA-AAS----ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQ 299 (343)
Q Consensus 226 p~~~~~~~~~~~g~~~~~~~s~~-~~~----~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~ 299 (343)
+. .+.....++|+|...+.. +.. ..++.+++++ .+.++++|.++.++||+.-++ +|++++.+ | .
T Consensus 677 ~~---~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~riDf~v~~~-g-~ 746 (809)
T PRK14573 677 GP---HERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKES-----QEQVLELAERIYRLLQGKGSCRIDFFLDEE-G-N 746 (809)
T ss_pred cc---eEEccCCCeeCchhcccCCCCCceEEecCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEcCC-C-C
Confidence 11 111112356777655421 110 1233343332 467899999999999998776 99999753 4 6
Q ss_pred EEEEEecCCCCCccCC
Q 019319 300 FYVIDINYFPGEVWEN 315 (343)
Q Consensus 300 ~~ViDVN~fPg~~~gv 315 (343)
+||+|||..||++ ..
T Consensus 747 ~yv~EiNt~PG~t-~~ 761 (809)
T PRK14573 747 FWLSEMNPIPGMT-EA 761 (809)
T ss_pred EEEEEeeCCCCCC-cc
Confidence 8999999999998 54
No 28
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=6.4e-16 Score=149.16 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=177.8
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc---C-------CCccEEEEccCchhH-HHHHHHHHHhCCCceeeChhhHHHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSD---Q-------GPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDPPYAIQH 112 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~---q-------~~fDvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (343)
++-..+.++.+..|.+...+|......- . ..+|+++..+.+... -..+|.|++..-==+|.-|..+-..
T Consensus 21 ~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~ 100 (317)
T COG1181 21 LSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAG 100 (317)
T ss_pred ecHHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhh
Confidence 3345567777778999999998873321 2 578998887766311 1345555543211277899999999
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCcEEEEecCC-CCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-
Q 019319 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK- 190 (343)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~-~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~- 190 (343)
++||..+-+++... +++++.++.++.+. .+..-.-...+++||++|||... || |-++..+.+.+++..
T Consensus 101 ~mdk~~~K~~~~~~-------g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~ 170 (317)
T COG1181 101 AMDKIVTKRLFKAE-------GLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSA 170 (317)
T ss_pred cccHHHHHHHHHHC-------CCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHH
Confidence 99999988888765 89999999996542 22211123568999999999884 66 788999999887764
Q ss_pred ------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccC-Cceeeeccccccccc---CCCCCCCcc
Q 019319 191 ------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS-AGVFRFPRVSCAAAS---ADDADLDPC 260 (343)
Q Consensus 191 ------l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~-~g~~~~~~~s~~~~~---~~~~~~~~~ 260 (343)
.+..+++|+|++ |+.+.|-++|+.. ... .++ .+++... ..+|+|...+..+.. ..++.++++
T Consensus 171 ~e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~--~l~---~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~ 242 (317)
T COG1181 171 LELAFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQ--ALP---LGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDE 242 (317)
T ss_pred HHHHHHhCCceeeccCCC--cceEEEEecCCcc-cce--ecC---ceEEecCCCeEEeeeccccCCCCceeeCCCCCCHH
Confidence 378899999997 9999999999964 111 111 1223323 467888776644221 123333333
Q ss_pred ccCCCChHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchH
Q 019319 261 VAELPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVR 319 (343)
Q Consensus 261 ~~~~p~~~~~~~lA~~l~~~lG-l~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~ 319 (343)
. .+.++++|.++.++|| ..+.++|++.+..+| ++|++|||..|||. .+.-|+
T Consensus 243 ~-----~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t-~~sl~P 295 (317)
T COG1181 243 I-----HEEIKELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMT-AMSLFP 295 (317)
T ss_pred H-----HHHHHHHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCc-ccccch
Confidence 2 4678999999999999 899999999987445 79999999999998 766554
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.72 E-value=1.5e-15 Score=148.43 Aligned_cols=230 Identities=19% Similarity=0.252 Sum_probs=149.3
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCcc-EEEEccCch-----------------hH--HHHHHHHHHhCCCceee
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGK-----------------EW--RQILEEYRQTHPEVTVL 104 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fD-vilhK~t~~-----------------~~--~~~l~~~~~~~p~v~Vi 104 (343)
....|..+|+++|+.++.+|.+..-....-.| .++....+. +. ...+..+.+. |+++.
T Consensus 10 l~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~ 87 (352)
T TIGR01161 10 LGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLF 87 (352)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeEC
Confidence 34468889999999999999864211111011 111122221 11 1233333333 57788
Q ss_pred ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~ 184 (343)
.++++++.+.||..+-+.|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+ |+ +|.++.++.+
T Consensus 88 p~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~-g~-~g~Gv~~v~~ 155 (352)
T TIGR01161 88 PSPDALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAA--LQELGFPVVLKARTG-GY-DGRGQYRIRN 155 (352)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHH--HHHcCCCEEEEeCCC-CC-CCCCEEEECC
Confidence 9999999999999999999976 899999999853 2222221 235899999999874 32 5789999999
Q ss_pred hhhHhcc-----CCCeEEEecccCCCcEEEEEEEC---CEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCC
Q 019319 185 QYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVG---EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 256 (343)
Q Consensus 185 ~~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG---~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~ 256 (343)
.++|.+. +.++++||||+ .+.++.|.++. +++.+. |-.. + ....|....+- .+..
T Consensus 156 ~~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~-----~~~~-~--~~~~g~~~~~~--------~p~~ 218 (352)
T TIGR01161 156 EADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFY-----PVVE-N--IHQDGILRYVV--------APAA 218 (352)
T ss_pred HHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEE-----CCcc-c--EEeCCEEEEEE--------CCCC
Confidence 9988653 34899999996 36888887763 233322 1111 0 00122222110 1222
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 257 LDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 257 ~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+++.+ .+.++++|.++.++||+ .++++|++++. +| ++||+|||.=||=.
T Consensus 219 ~~~~~-----~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~~s 268 (352)
T TIGR01161 219 VPDAI-----QARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVHNS 268 (352)
T ss_pred CCHHH-----HHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCCCc
Confidence 22221 35689999999999998 47789999975 35 68999999999833
No 30
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.72 E-value=6.4e-16 Score=152.00 Aligned_cols=229 Identities=14% Similarity=0.198 Sum_probs=148.4
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCc-----------------------CCCccEEEEccCchhHHHHHHHHHHhCCCce
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ 102 (343)
...++.+|+++|+.++.+|.+..-.. ...+|+|+.=... .....+..+.+ .|++
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~l~~--~g~~ 87 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFELEK--EGYF 87 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHHHHh--cCCe
Confidence 34577788999999988888642111 1135655542211 11223333322 3677
Q ss_pred eeChhhHHHHhcCHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 103 VLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 103 ViDp~~ai~~~~dR~~~~~~L-~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
+..++++++.+.||..+.+.+ .++ +|++|++..+.+ .+++.+. ...++||+|+||..+ + +|.++.+
T Consensus 88 ~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~VvKP~~g--~-~s~gv~~ 154 (380)
T TIGR01142 88 VVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREA--VEKIGYPCVVKPVMS--S-SGKGQSV 154 (380)
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHH--HHHcCCCEEEEECCC--c-CCCCeEE
Confidence 888999999999999988875 555 899999998853 2223221 246899999999864 3 5789999
Q ss_pred EeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEE---CCEEEEEEEecCCCCccccCccCCceeeeccccc
Q 019319 182 AYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 247 (343)
Q Consensus 182 v~~~~~L~~l-----------~~p~v~QEFI~h~g~~~Kv~VI---G~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~ 247 (343)
+.++++|... +.++++||||+ .+.++.|.++ ++++... ....+.. ..|.+..+
T Consensus 155 v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~~~---- 221 (380)
T TIGR01142 155 VRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYHES---- 221 (380)
T ss_pred ECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeEEE----
Confidence 9999988642 35799999996 3678888877 3332221 1110100 11111100
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCCc
Q 019319 248 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 248 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
..+..+++.. .+.++++|.++.++||. .++++|++.+++ .+||+|||.-||-. +.+
T Consensus 222 ----~~p~~l~~~~-----~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~-~~~ 278 (380)
T TIGR01142 222 ----WQPQEMSEKA-----LEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDT-GMV 278 (380)
T ss_pred ----ECCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCC-ceE
Confidence 0122232221 35678999999999998 677899999742 48999999999966 554
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.69 E-value=2.7e-15 Score=147.97 Aligned_cols=228 Identities=18% Similarity=0.210 Sum_probs=151.6
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCC---------------------CccEEEEccCchhHHHHHHHHHHhCCCcee
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSDQG---------------------PFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~---------------------~fDvilhK~t~~~~~~~l~~~~~~~p~v~V 103 (343)
.-..|..+|+++|+.+..+|++..-.-.. .+|+|..-... .....+ ++++++ ..+
T Consensus 13 l~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~-i~~~~l-~~l~~~--~~~ 88 (372)
T PRK06019 13 LGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFEN-VPAEAL-DALAAR--VPV 88 (372)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCC-CCHHHH-HHHhcC--Cee
Confidence 33457788999999999999864221111 33443211110 111223 334444 468
Q ss_pred eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEe
Q 019319 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (343)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~ 183 (343)
..+++++..+.||..+-+.|.++ +||+|++..+++ .+++.+. ...++||+|+||..+ |+ .|+++.++.
T Consensus 89 ~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~--~~~~g~P~vlKp~~~-g~-~g~Gv~~v~ 156 (372)
T PRK06019 89 PPGPDALAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAA--LADLGLPAVLKTRRG-GY-DGKGQWVIR 156 (372)
T ss_pred CcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHH--HHHcCCcEEEEeCCC-Cc-CCCCeEEEC
Confidence 89999999999999999999976 899999999853 2223221 235899999999873 44 688999999
Q ss_pred ChhhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccccCccCCceeeecccccccccCCCC
Q 019319 184 DQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA 255 (343)
Q Consensus 184 ~~~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~ 255 (343)
++++|.+. ..++++||||+ .++++.|.++++ ++.+. |-.+ + + ...|.+.++. .++
T Consensus 157 ~~~el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~-----p~~e-~-~-~~~gi~~~~~--------~pa 219 (372)
T PRK06019 157 SAEDLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFY-----PLVE-N-V-HRNGILRTSI--------APA 219 (372)
T ss_pred CHHHHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEe-----CCcc-c-E-EeCCEEEEEE--------CCC
Confidence 99988763 45899999996 378888887754 33322 1101 0 1 1123333221 122
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 256 DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 256 ~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.+++.. .++++++|.++.++||+. ++++|++++. +| ++||+|||.=|+-.
T Consensus 220 ~~~~~~-----~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~s 270 (372)
T PRK06019 220 RISAEL-----QAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNS 270 (372)
T ss_pred CCCHHH-----HHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCc
Confidence 232222 457899999999999975 7789999974 45 69999999999854
No 32
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.64 E-value=2.5e-14 Score=148.39 Aligned_cols=244 Identities=15% Similarity=0.119 Sum_probs=160.6
Q ss_pred cCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCC---------------------CccEEEEccC
Q 019319 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG---------------------PFDIVLHKLT 83 (343)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~---------------------~fDvilhK~t 83 (343)
......+||....- ..-..+..+|+++|++++.+|.+..-.... ..|+|..-..
T Consensus 18 ~~~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 33556678888877 444557889999999999999875211100 1233321100
Q ss_pred chhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcE
Q 019319 84 GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPL 163 (343)
Q Consensus 84 ~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~ 163 (343)
. .....+..+.+. +++|..+++++..|+||+.+-+.|.++ +|++|++..+.+ .+++.+ ....++||+
T Consensus 93 ~-v~~~~l~~le~~--gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~--~~~~ig~P~ 159 (577)
T PLN02948 93 H-VDVDTLEALEKQ--GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEK--AGDLFGYPL 159 (577)
T ss_pred C-CCHHHHHHHHhc--CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHH--HHHhcCCcE
Confidence 0 012233333322 566789999999999999999999976 899999998852 222222 234689999
Q ss_pred EEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccccC
Q 019319 164 VAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDL 233 (343)
Q Consensus 164 VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~ 233 (343)
|+||..+ |+ +|.++.++.++++|... +.++++|+||+ ..+.+-|.|+++ .+.+ .|..+.
T Consensus 160 VvKP~~g-gs-~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~-----~p~~E~--- 228 (577)
T PLN02948 160 MLKSRRL-AY-DGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRC-----YPVVET--- 228 (577)
T ss_pred EEEeCCC-CC-CCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEE-----ecCccc---
Confidence 9999873 33 57899999999887652 46899999995 348899988853 3332 122110
Q ss_pred ccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 234 STSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 234 ~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
....+.+.+. ..++.+++.. .+.++++|.++.++||.. ++.+|++++. +| .+||+|||.-||..
T Consensus 229 ~~~~~~~~~~--------~~Pa~l~~~~-----~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG-~v~v~EInpRpg~s 293 (577)
T PLN02948 229 IHKDNICHVV--------EAPANVPWKV-----AKLATDVAEKAVGSLEGAGVFGVELFLLK-DG-QILLNEVAPRPHNS 293 (577)
T ss_pred EEECCeeEEE--------EECCCCCHHH-----HHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CC-cEEEEEEeCCCCCC
Confidence 0011222211 0133343332 467899999999999865 4469999975 35 68999999999965
No 33
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.64 E-value=3.4e-15 Score=131.00 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=100.7
Q ss_pred HhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc
Q 019319 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191 (343)
Q Consensus 112 ~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l 191 (343)
+|.||..|.+++.++ +|++|++..+.. .+++.+. ...++||+|+||..+. +|.++.++.++++|.+.
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~--~~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAF--AEDLGFPFVVKPVDGS---GSRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHH--HHHSSSSEEEEESS-S---TTTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEcCccc---cCCCEEEeCCHHHHHHH
Confidence 588999999999987 899999999953 2233332 2346799999999854 46899999999998764
Q ss_pred -----------CCCeEEEecccCCCcEE--EEEEECCEEEEE-EEecCCCCccccCccCCceeeecccccccccCCCCCC
Q 019319 192 -----------EPPLVLQEFVNHGGVLF--KVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADL 257 (343)
Q Consensus 192 -----------~~p~v~QEFI~h~g~~~--Kv~VIG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~ 257 (343)
..++++||||+ |.++ .+++.++++++. ......... .... ....... ..+.
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~--g~e~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~-~~~~~~~---------~~~~-- 132 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIP--GDEYSVDGVVDDGEVVFAGISRYVRQSP-GHFS-GGVPTGY---------SVPS-- 132 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE-----SEEEEEEEEEETTEEEEEEEEEEEEEET-CCCS-SSEEEEE---------EES---
T ss_pred HHHHHHhcccCCccEEEEEeee--eeeEEEEEEEEcceEEEEEEEEEecccc-cccc-cceeeee---------eccc--
Confidence 35799999997 5655 566777876543 222111100 0000 0000000 0001
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 258 DPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 258 ~~~~~~~p~~~~~~~lA~~l~~~lGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
+.+..+.+++++.++.+++|. ..+++|++.+.+ | ++++||||.=||
T Consensus 133 -----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 133 -----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp ------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred -----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 111136789999999999998 888999999975 6 799999998665
No 34
>PRK07206 hypothetical protein; Provisional
Probab=99.63 E-value=4.1e-14 Score=140.88 Aligned_cols=230 Identities=15% Similarity=0.137 Sum_probs=147.7
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCc----------------------------CCCccEEEEccCchhHHHHHHHHHHhC
Q 019319 47 PKLEGLARNKGILFVAIDQNRPLSD----------------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~l~~----------------------------q~~fDvilhK~t~~~~~~~l~~~~~~~ 98 (343)
..+.++|+++|+.++.+|.+..... .-.+|+|+. +.+.... +.+...++
T Consensus 15 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~--~~e~~~~-~~a~l~~~ 91 (416)
T PRK07206 15 KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIA--GAESGVE-LADRLAEI 91 (416)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEE--CCCccHH-HHHHHHHh
Confidence 3577888999999998885531110 124466664 2222222 23334455
Q ss_pred CCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCC---cEEEecCCCCCCCC
Q 019319 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL---PLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f---P~VvKp~~a~GS~~ 175 (343)
-+.+.-++++++..++||+.|.+.|.++ +|++|++..+. +.+++.+.+ ..++| |+|+||..+. +
T Consensus 92 l~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~--~~~g~~~~P~VvKP~~g~---g 158 (416)
T PRK07206 92 LTPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWL--RENGLIDRPVVIKPLESA---G 158 (416)
T ss_pred cCCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHH--HhcCCCCCCEEEeCCCCC---C
Confidence 5766689999999999999999999976 89999999885 222333322 34566 9999998854 5
Q ss_pred ceeeEEEeChhhHhcc--------------CCCeEEEecccCCCcEEEE--EEECCEEEEE--EEecCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL--------------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVV--RRFSLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l--------------~~p~v~QEFI~h~g~~~Kv--~VIG~~v~~~--~R~slp~~~~~~~~~~~ 237 (343)
|.++.++.+.++|.+. +.++++||||. |..|-| ++.++++++. .+..-.... .
T Consensus 159 s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-------~ 229 (416)
T PRK07206 159 SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-------S 229 (416)
T ss_pred CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC-------C
Confidence 6799999999987652 24799999995 788866 4446665432 322111111 1
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
+.+.+.... .. |. ..+..+.+.+++.++.++||+ ..+.+|++.+. +| +++||||.=||=. .+
T Consensus 230 ~~~~~~~~~-------~~---p~--~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~g--~~liEin~R~~G~-~~ 293 (416)
T PRK07206 230 GSTVYDYDE-------FL---DY--SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-DG--PRLIEIGARLDGG-LH 293 (416)
T ss_pred CCceecccc-------cC---Cc--cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-CC--CEEEEECCccCCC-Cc
Confidence 111110000 00 00 011245688999999999998 57789999975 34 7899999988855 55
Q ss_pred cc
Q 019319 316 AG 317 (343)
Q Consensus 316 ~~ 317 (343)
+.
T Consensus 294 ~~ 295 (416)
T PRK07206 294 PD 295 (416)
T ss_pred cc
Confidence 53
No 35
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.63 E-value=3.7e-14 Score=156.65 Aligned_cols=228 Identities=16% Similarity=0.270 Sum_probs=148.3
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchhHHHHHHHHHHhC
Q 019319 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (343)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~------------------------q~~fDvilhK~t~~~~~~~l~~~~~~~ 98 (343)
.+.+..++++++++|++.+.+|.+-.... .-..|.|+.-..++.... +....++
T Consensus 574 dy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~~-la~~le~- 651 (1066)
T PRK05294 574 DYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPLK-LAKALEA- 651 (1066)
T ss_pred chhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHHH-HHHHHHH-
Confidence 34556689999999999999997652210 113566666555533322 2222322
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
-|++++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+ + +|.
T Consensus 652 ~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvvVKP~~~--~-Gg~ 718 (1066)
T PRK05294 652 AGVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEV--AEEIGYPVLVRPSYV--L-GGR 718 (1066)
T ss_pred CCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHH--HHhcCCCeEEEeCCC--C-CCC
Confidence 377765 6889999999999999999976 899999998852 2223222 246899999999774 3 578
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCc-EEEEEEE--CCEEEEE--EEe-cCCCCccccCccCCceeee
Q 019319 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGV-LFKVYIV--GEAIKVV--RRF-SLPDVTKQDLSTSAGVFRF 242 (343)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~-~~Kv~VI--G~~v~~~--~R~-slp~~~~~~~~~~~g~~~~ 242 (343)
+|.++.|+++|..+ +.|+++||||. |. .+-|-++ |+.+.+. .++ ....+..++ ....+
T Consensus 719 Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~--G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~~~ 791 (1066)
T PRK05294 719 AMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE--GAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SACSL 791 (1066)
T ss_pred cEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC--CCEEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcEEe
Confidence 99999999988752 46899999995 44 5544444 4434331 121 100111010 00000
Q ss_pred cccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 243 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 243 ~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
.+..+++.. .+.++++|.++.++||+ .++++|+++++ + .+||||||.-|+
T Consensus 792 ----------p~~~l~~~~-----~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 792 ----------PPQTLSEEI-----IEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred ----------cCCCCCHHH-----HHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 011221111 35688999999999999 56679999974 3 699999998765
No 36
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.63 E-value=3.9e-14 Score=136.33 Aligned_cols=168 Identities=24% Similarity=0.330 Sum_probs=117.6
Q ss_pred Cc-eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 100 EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 100 ~v-~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
|+ ++.++++++..+.||..+.+.|.++ +|++|++..+++ .+++.+.+....++||+|+||..+ + .|.+
T Consensus 95 g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g--~-~s~g 163 (326)
T PRK12767 95 GVKVLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDG--S-ASIG 163 (326)
T ss_pred CcEEEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCC--C-CccC
Confidence 54 4679999999999999999999976 899999988752 222222112356899999999774 3 4788
Q ss_pred eEEEeChhhHhcc---CCCeEEEecccCCCcEEEEEEE---CCEEEE-EEEecCCCCccccCccCCceeeeccccccccc
Q 019319 179 LSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIV---GEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 251 (343)
Q Consensus 179 m~iv~~~~~L~~l---~~p~v~QEFI~h~g~~~Kv~VI---G~~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~ 251 (343)
+.++.+.++|.+. ..++++|||| .|..+.+-++ ++++++ ..+..+. .. .|.. .
T Consensus 164 v~~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~-~~-------~g~~-----~----- 223 (326)
T PRK12767 164 VFKVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIE-VR-------AGET-----S----- 223 (326)
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeee-ec-------CCce-----e-----
Confidence 9999999998763 4589999999 5777766544 445543 2333211 00 0000 0
Q ss_pred CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 252 ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 252 ~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
... .. +.+.+.+++.++.++||+ .+++||+++++ | ++|+||||.-++
T Consensus 224 -~~~-------~~-~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 224 -KGV-------TV-KDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred -EEE-------Ec-CCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 000 01 135689999999999999 47889999985 3 699999997443
No 37
>PRK06849 hypothetical protein; Provisional
Probab=99.61 E-value=8.4e-14 Score=137.82 Aligned_cols=167 Identities=19% Similarity=0.324 Sum_probs=115.1
Q ss_pred eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
+...++++++.|+||..+.+.++++ ||++|++..+++ .+++.+ +.....+||+|+||..++| ++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l~~-~~~~~~~~P~vlKP~~~~~---~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAIRN-FMFKTPHTPYVLKPIYSRF---VRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHH-HhhcCCCCcEEEEeCcccC---CCeEEE
Confidence 4568899999999999999999976 899999999853 222222 1222238999999988653 567888
Q ss_pred EeChhhHhcc----CCCeEEEecccCCCcEE--EEEEECCEEEEE-EEecCCCCccccCccCCceeeecccccccccCCC
Q 019319 182 AYDQYSLKKL----EPPLVLQEFVNHGGVLF--KVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 254 (343)
Q Consensus 182 v~~~~~L~~l----~~p~v~QEFI~h~g~~~--Kv~VIG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~ 254 (343)
+.+++.+..+ ..|+++||||+ |..+ -.++.++++.+. .+. +.... ..|. .
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~~~-----~~~~--------------~ 227 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEYCA-----GSGA--------------Q 227 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--ccccC-----CCCc--------------e
Confidence 8888877765 35799999996 6555 455667776543 211 11100 0000 0
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 255 ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
....+ . ..+.+.+++.++.++||++ .++||++.+. +| ++|+||||.=++
T Consensus 228 ~~~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 228 IAFQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEeEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 00000 0 1356899999999999988 7779999874 55 799999996554
No 38
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.61 E-value=1e-13 Score=152.81 Aligned_cols=229 Identities=14% Similarity=0.260 Sum_probs=148.6
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchhHHHHHHHHHHhC
Q 019319 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (343)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~------------------------q~~fDvilhK~t~~~~~~~l~~~~~~~ 98 (343)
++.+-.++++++++|++++.+|.+-.... ....|.|+.-..+... ..+....++
T Consensus 574 d~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~- 651 (1050)
T TIGR01369 574 DYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEE- 651 (1050)
T ss_pred chHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHH-
Confidence 34556679999999999999988632110 1134555544443221 122222222
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
.|++++ .+++++..+.||..+.++|.++ +|++|++..+. +.+++.+. ...++||+|+||..+. +|.
T Consensus 652 ~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~-s~ee~~~~--~~~igyPvIVKP~~~~---Gg~ 718 (1050)
T TIGR01369 652 AGVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTAT-SVEEAVEF--ASEIGYPVLVRPSYVL---GGR 718 (1050)
T ss_pred CCCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEEC-CHHHHHHH--HHhcCCCEEEEECCCC---CCC
Confidence 377765 7899999999999999999976 89999999885 33233321 2468999999998753 468
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEE--EEEECCEEEEE--EEecC-CCCccccCccCCceeeec
Q 019319 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFK--VYIVGEAIKVV--RRFSL-PDVTKQDLSTSAGVFRFP 243 (343)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~K--v~VIG~~v~~~--~R~sl-p~~~~~~~~~~~g~~~~~ 243 (343)
+|.+++|+++|... +.|+++||||+ +|..+- +++-|+++.+. ...-. ..+..++ ....+
T Consensus 719 gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGd-----s~~~~- 791 (1050)
T TIGR01369 719 AMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-DAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGD-----STCVL- 791 (1050)
T ss_pred CeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-CCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCC-----ceEEe-
Confidence 99999999998652 46899999996 366665 45566666543 22111 1111000 00000
Q ss_pred ccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 244 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 244 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
....+++.. .+.++++|.++.++||+. ++++|+++++ | .+||||||.-++
T Consensus 792 ---------P~~~l~~~~-----~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 792 ---------PPQTLSAEI-----VDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred ---------cCCCCCHHH-----HHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 011121111 356899999999999974 4459999974 3 699999998876
No 39
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.60 E-value=8.3e-14 Score=137.72 Aligned_cols=230 Identities=15% Similarity=0.231 Sum_probs=148.0
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC--------------c---------CCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLS--------------D---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~--------------~---------q~~fDvilhK~t~~~~~~~l~~~~~~~p~v 101 (343)
....+..+++++|+.++.+|.+..-. + ...+|+|+.-..+ .....+.+..+ . |+
T Consensus 23 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~-~~~~~~~~l~~-~-g~ 99 (395)
T PRK09288 23 LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA-IATDALVELEK-E-GF 99 (395)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc-CCHHHHHHHHh-c-CC
Confidence 34457778899999999888764111 0 1146666653322 11223334333 3 77
Q ss_pred eeeChhhHHHHhcCHHHHHHHHH-hccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~-~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~ 180 (343)
++..++++++.++||..+-+.|. ++ +||+|++..+++ .+++.+. ...++||+|+||.. |+ .|.++.
T Consensus 100 ~~~~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~--~~~~g~P~VvKP~~--g~-~s~Gv~ 166 (395)
T PRK09288 100 NVVPTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAA--VEEIGYPCVVKPVM--SS-SGKGQS 166 (395)
T ss_pred eeCCCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHH--HHhcCCCEEEEeCC--Cc-CCCCeE
Confidence 77788999999999999999884 44 899999999853 2223222 24689999999985 34 578999
Q ss_pred EEeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCccccCccCCceeeecccc
Q 019319 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (343)
Q Consensus 181 iv~~~~~L~~l-----------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~s 246 (343)
++.++++|.+. +.++++||||+ .+..+.|.++.+. .... ....+.. ..|.+...
T Consensus 167 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~--- 234 (395)
T PRK09288 167 VVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHRQ------EDGDYRES--- 234 (395)
T ss_pred EECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccEE------ECCEEEEE---
Confidence 99999888652 25899999996 4788888877432 2221 0111110 01111100
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCCc
Q 019319 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
..+..+++.. .++++++|.++.++||. .++.+|++++++ .+||||||.=||-. +..
T Consensus 235 -----~~p~~l~~~~-----~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~-~~~ 291 (395)
T PRK09288 235 -----WQPQPMSPAA-----LEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDT-GMV 291 (395)
T ss_pred -----ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCC-cce
Confidence 0122222221 34578899999999985 345699999752 58999999999865 543
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.58 E-value=1.4e-13 Score=138.61 Aligned_cols=229 Identities=15% Similarity=0.167 Sum_probs=143.0
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCC----c----------------------------CCCccEEEEccCc-hhHHHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLS----D----------------------------QGPFDIVLHKLTG-KEWRQI 90 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~----~----------------------------q~~fDvilhK~t~-~~~~~~ 90 (343)
.+.-+++++|+++|+..+.++-..+-. . ...+|+|+.=... .+. ..
T Consensus 14 ~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~-~~ 92 (445)
T PRK08462 14 EIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSEN-QN 92 (445)
T ss_pred HHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccC-HH
Confidence 445678899999999988884322110 0 1134444433211 001 12
Q ss_pred HHHHHHhCCCcee-eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEec
Q 019319 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 167 (343)
Q Consensus 91 l~~~~~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (343)
+.+.. +.-|+++ -.+++++..+.||..+.+.|.++ +|++|++. .+. +.+++.+ ....++||+|+||
T Consensus 93 ~a~~~-e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~--~~~~~g~PvvvKP 161 (445)
T PRK08462 93 FVEIC-SHHNIKFIGPSVEVMALMSDKSKAKEVMKRA-------GVPVIPGSDGALK-SYEEAKK--IAKEIGYPVILKA 161 (445)
T ss_pred HHHHH-HHCCCeEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEe
Confidence 22222 2346754 58889999999999999999976 89998864 232 2222222 1346899999999
Q ss_pred CCCCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCc
Q 019319 168 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVT 229 (343)
Q Consensus 168 ~~a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~-~R~-slp~~~ 229 (343)
..+ + +|.+|.++.++++|.+. +.++++||||+ +++.+.+.++|+. ++.. .|. +...
T Consensus 162 ~~g--~-gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~-- 235 (445)
T PRK08462 162 AAG--G-GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQR-- 235 (445)
T ss_pred CCC--C-CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEecccccee--
Confidence 884 3 57899999999988652 24699999996 4677888888652 2222 111 1100
Q ss_pred cccCccCCceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 019319 230 KQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINY 307 (343)
Q Consensus 230 ~~~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~ 307 (343)
....+ + . ..+. .+++.. .+.+.++|.++.++||+.-++ ||++++.+ | .+||+|||.
T Consensus 236 ------~~~~~-~---~-----~~p~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNp 293 (445)
T PRK08462 236 ------RHQKL-I---E-----ESPAVVLDEKT-----RERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNT 293 (445)
T ss_pred ------cccce-E---E-----EcCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEEC
Confidence 00000 0 0 0011 122111 356889999999999997555 99999853 3 589999998
Q ss_pred CCCCc
Q 019319 308 FPGEV 312 (343)
Q Consensus 308 fPg~~ 312 (343)
=+|-.
T Consensus 294 R~~~~ 298 (445)
T PRK08462 294 RLQVE 298 (445)
T ss_pred CcCcC
Confidence 88754
No 41
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.56 E-value=3e-13 Score=137.24 Aligned_cols=177 Identities=20% Similarity=0.257 Sum_probs=120.4
Q ss_pred Cce-eeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 100 ~v~-ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
|++ +-.++++++.|.||..+.+.+.++ +||+|++. .+. +.+++.+ ....++||+|+||..++ +|
T Consensus 102 gi~~igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~--~~~~igyPvvvKp~~gg---gg 168 (467)
T PRK12833 102 GLIFVGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALE--VAARIGYPLMIKAAAGG---GG 168 (467)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHH--HHHHhCCCEEEEECCCC---CC
Confidence 554 456789999999999999999976 89998775 443 2222222 13458999999998843 47
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE--EE-EEEEe-cCCCCccccCccCCce
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA--IK-VVRRF-SLPDVTKQDLSTSAGV 239 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~--v~-~~~R~-slp~~~~~~~~~~~g~ 239 (343)
.+|.++.++++|.+. +.++++|+||+. |+.+-|-|+||. ++ ...|. +... .....
T Consensus 169 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r-------~~~ki 240 (467)
T PRK12833 169 RGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQR-------RRQKI 240 (467)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeeccccc-------CCccE
Confidence 899999999988652 457999999973 799999888874 23 22221 1110 00000
Q ss_pred eeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 240 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 240 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+.. +....+++.. .+.+.++|.++.++||+.-.+ +|++.+..+| .+|+||||.=++..
T Consensus 241 ~e~---------~p~~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 241 LEE---------APSPSLTPAQ-----RDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EEE---------CCCCCCCHHH-----HHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 100 0011122111 356899999999999998655 9999975445 69999999877644
No 42
>PRK05586 biotin carboxylase; Validated
Probab=99.55 E-value=2.5e-13 Score=137.04 Aligned_cols=179 Identities=11% Similarity=0.188 Sum_probs=119.3
Q ss_pred CCce-eeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~-ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
-|++ +--+++++..+.||..+.+.+.++ +|++|++. .+. +.+++.+ ....++||+|+||..+ + +
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~--~~~~igyPvvvKP~~g--g-g 164 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALE--IAKEIGYPVMVKASAG--G-G 164 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECCC--C-C
Confidence 3654 568899999999999999999976 89999874 333 2222222 1246899999999874 3 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCccccCccCCce
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGV 239 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~ 239 (343)
|+++.++.++++|.+. +.++++||||+ +++.+.+.|+++. +.....+... +......
T Consensus 165 g~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~------~~~~~~~ 237 (447)
T PRK05586 165 GRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS------LQRRNQK 237 (447)
T ss_pred CCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc------eEecccc
Confidence 7899999999988542 35799999996 3478899888753 3322111000 0000000
Q ss_pred eeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 240 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 240 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
. ... +....+++.. .+.+.++|.++.++||+.-.+ +|++++. +| ++||+|||.=||..
T Consensus 238 ~----~~~----~p~~~l~~~~-----~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 238 V----LEE----APSPVMTEEL-----RKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred e----EEE----cCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 0 000 0001121111 346889999999999998777 9999985 35 69999999888644
No 43
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.54 E-value=4.6e-13 Score=135.15 Aligned_cols=230 Identities=13% Similarity=0.172 Sum_probs=142.5
Q ss_pred ccchHHHhhhhhcceEEEEeeCCC--C--C---Cc-------------------------CCCccEEEEccCc-hhHHHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNR--P--L---SD-------------------------QGPFDIVLHKLTG-KEWRQI 90 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~--~--l---~~-------------------------q~~fDvilhK~t~-~~~~~~ 90 (343)
.+..+++++|+++|+.++.+|.+. + - .+ ...+|+|+.-..- .+...
T Consensus 12 ~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~- 90 (449)
T TIGR00514 12 EIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENAN- 90 (449)
T ss_pred HHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHH-
Confidence 445678899999999999997631 1 0 10 0135555543310 01111
Q ss_pred HHHHHHhCCCcee-eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEec
Q 019319 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 167 (343)
Q Consensus 91 l~~~~~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (343)
+.+..++ -|+++ -.++++++.|.||..+.+.|.++ +|++|++. .+. +.+++.+ ....++||+|+||
T Consensus 91 ~a~~~e~-~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~-~~~e~~~--~~~~ig~PvvvKP 159 (449)
T TIGR00514 91 FAEQCER-SGFTFIGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVE-DEEENVR--IAKRIGYPVIIKA 159 (449)
T ss_pred HHHHHHH-CCCcEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcC-CHHHHHH--HHHHhCCCEEEEe
Confidence 2222222 46654 47899999999999999999976 89998764 332 2222222 1246899999999
Q ss_pred CCCCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccc
Q 019319 168 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQ 231 (343)
Q Consensus 168 ~~a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~ 231 (343)
..++ +|.++.++.++++|.+. ..++++||||. +++.+-+-|+++ ++...... +..
T Consensus 160 ~~g~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~---~~~-- 230 (449)
T TIGR00514 160 TAGG---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGER---DCS-- 230 (449)
T ss_pred CCCC---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEecc---ccC--
Confidence 8854 47899999999887652 34799999995 467788877764 33322110 000
Q ss_pred cCccCCc-eeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCC
Q 019319 232 DLSTSAG-VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 309 (343)
Q Consensus 232 ~~~~~~g-~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fP 309 (343)
...... .+.+ .....+++.. .+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.=+
T Consensus 231 -~~~~~~~~~~~---------~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~ 293 (449)
T TIGR00514 231 -IQRRHQKLLEE---------APSPALTPEL-----RRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRI 293 (449)
T ss_pred -ceecccceEEE---------CCCCCCCHHH-----HHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCC
Confidence 000000 0000 0011122111 356889999999999997554 9999984 34 68999999877
Q ss_pred CC
Q 019319 310 GE 311 (343)
Q Consensus 310 g~ 311 (343)
|.
T Consensus 294 ~~ 295 (449)
T TIGR00514 294 QV 295 (449)
T ss_pred CC
Confidence 53
No 44
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.54 E-value=7e-13 Score=131.22 Aligned_cols=215 Identities=16% Similarity=0.202 Sum_probs=131.8
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~ 124 (343)
..++.++|++.+++++.+.++.++ ...+.+..++ .|++++ .++++++.+.||..+-+.|+
T Consensus 16 ~~~l~~~~~~~~id~vi~g~E~~l------------------~~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~ 76 (379)
T PRK13790 16 HQAILDFAKQQNVDWVVIGPEQPL------------------IDGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIME 76 (379)
T ss_pred HHHHHHHHHHhCCCEEEECCcHHH------------------HHHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHH
Confidence 355788888888888877665432 1233333322 477777 55599999999999999999
Q ss_pred hccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc---------CCCe
Q 019319 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPL 195 (343)
Q Consensus 125 ~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l---------~~p~ 195 (343)
++ +||+|++..+.+ .+++.+.+ ..++||+|+||.. |+ +|.+|.++.+.+++.+. ..++
T Consensus 77 ~~-------gIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~--~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~v 143 (379)
T PRK13790 77 KY-------NIPTADYKEVER-KKDALTYI--ENCELPVVVKKDG--LA-AGKGVIIADTIEAARSAIEIMYGDEEEGTV 143 (379)
T ss_pred HC-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCC--CC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeE
Confidence 76 899999988852 22232322 3589999999975 33 57899999999887541 3479
Q ss_pred EEEecccCCCcEEEEEEE--CCEEEE---EEEecCCCCccccCccCCceeeecccccccccCCCC-CCCccccCCCChHH
Q 019319 196 VLQEFVNHGGVLFKVYIV--GEAIKV---VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPL 269 (343)
Q Consensus 196 v~QEFI~h~g~~~Kv~VI--G~~v~~---~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~ 269 (343)
++||||. |..+-|.++ |+.++. ..+.....+. +++..+.| . .+.. .+. .++++. ....
T Consensus 144 lvEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~~kr~~~-~d~g~~tg-------g-~~~~-~p~~~l~~~~----~~~~ 207 (379)
T PRK13790 144 VFETFLE--GEEFSLMTFVNGDLAVPFDCIAQDHKRAFD-HDEGPNTG-------G-MGAY-CPVPHISDDV----LKLT 207 (379)
T ss_pred EEEEccc--CceEEEEEEeeCCEEEeccccccccccccc-CCCCCcCC-------C-CceE-eeCCCCCHHH----HHHH
Confidence 9999994 777776655 443221 1110000000 11111100 0 0000 011 111111 0112
Q ss_pred HHHHHHHHHHHh---CCcEeE---EEEEEeCCCCCeEEEEEecCCCCC
Q 019319 270 LERLAKELRRQL---GLRLFN---LDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 270 ~~~lA~~l~~~l---Gl~l~G---vDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
.++++.++.++| |+.++| +|++++. +| +||+|+|.=||-
T Consensus 208 ~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G~ 252 (379)
T PRK13790 208 NETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccCC
Confidence 377888888888 667666 5999874 34 899999997763
No 45
>PLN02735 carbamoyl-phosphate synthase
Probab=99.54 E-value=8.2e-13 Score=145.89 Aligned_cols=230 Identities=13% Similarity=0.225 Sum_probs=151.6
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchh---HHHHHHHHHHhCC
Q 019319 47 PKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKE---WRQILEEYRQTHP 99 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~l~~------------------------q~~fDvilhK~t~~~---~~~~l~~~~~~~p 99 (343)
-..+.+++++|++.+.+|-+-.... ....|.|+.=..++. ....+.++..+++
T Consensus 598 v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~ 677 (1102)
T PLN02735 598 CHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNP 677 (1102)
T ss_pred HHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhcc
Confidence 3477899999999999988643211 124566666554431 2344555554433
Q ss_pred --------Cc-eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCC
Q 019319 100 --------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 170 (343)
Q Consensus 100 --------~v-~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a 170 (343)
|+ ++-.+++++..+.||..+-++|.++ +||+|++..+.+ .+++.+ ....++||+|+||..+
T Consensus 678 ~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~--~a~~iGyPvvVKP~~g 747 (1102)
T PLN02735 678 PPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALA--IAKRIGYPVVVRPSYV 747 (1102)
T ss_pred chhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHH--HHHhcCCCeEEEeCCC
Confidence 43 4568899999999999999999976 899999988752 222222 2346899999999874
Q ss_pred CCCCCceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCccccCccCC
Q 019319 171 DGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSA 237 (343)
Q Consensus 171 ~GS~~sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~slp~~~~~~~~~~~ 237 (343)
. +|.+|.+++++++|... +.|+++|+||. +|+.+-|-+++| .+.+. .+.-. . ..
T Consensus 748 ~---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~---~------~~ 814 (1102)
T PLN02735 748 L---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHI---E------QA 814 (1102)
T ss_pred C---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEee---e------cc
Confidence 3 46799999999998752 35799999996 489999999985 23321 11100 0 00
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCC
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
|.....+.. ......+++.. .+.++++|.+++++||..=+ .+|++++. +| ++||+|||.-||
T Consensus 815 gvhsGds~~----~~P~~~L~~e~-----~~~i~~~a~ki~~~L~~~G~~~vqf~v~~-dg-~~yviEiNpR~s 877 (1102)
T PLN02735 815 GVHSGDSAC----SLPTQTIPSSC-----LATIRDWTTKLAKRLNVCGLMNCQYAITP-SG-EVYIIEANPRAS 877 (1102)
T ss_pred CccCCCccE----EecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeeEEEEEcC-CC-cEEEEEEeCCCC
Confidence 100000000 00011222221 35678899999999997644 59999964 24 699999999998
No 46
>PLN02735 carbamoyl-phosphate synthase
Probab=99.53 E-value=7e-13 Score=146.41 Aligned_cols=233 Identities=14% Similarity=0.218 Sum_probs=150.2
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCC------------------------CcCCCccEEEEccCchhH---HHHHH-HHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPL------------------------SDQGPFDIVLHKLTGKEW---RQILE-EYR 95 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l------------------------~~q~~fDvilhK~t~~~~---~~~l~-~~~ 95 (343)
++-..+++++++.|++++.+|.+-.. .+...+|+|+.=+.++.. ...+. +..
T Consensus 44 ~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~ 123 (1102)
T PLN02735 44 YSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGI 123 (1102)
T ss_pred chHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCH
Confidence 44455888999999999999986421 012367888876544321 11222 122
Q ss_pred HhCCCcee-eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCC-CcEEEecCCCCCC
Q 019319 96 QTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGS 173 (343)
Q Consensus 96 ~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~GS 173 (343)
-+.-|+++ -.+++++..+.||..+-++|.++ +||+|++..+++ .++..+. ...++ ||+|+||..+.
T Consensus 124 Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~eea~~~--~~~iG~yPvVVKP~~~~-- 191 (1102)
T PLN02735 124 LEKYGVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATT-LDECFEI--AEDIGEFPLIIRPAFTL-- 191 (1102)
T ss_pred HHHCCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCC-HHHHHHH--HHHhCCCCEEEEeCCCC--
Confidence 22346655 46889999999999999999976 899999998853 2222221 23577 99999998743
Q ss_pred CCceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECC---EEEEEEEecCCCCccccCccCCcee
Q 019319 174 AKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 174 ~~sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g-~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~ 240 (343)
++.++.+++|+++|... ..++++||||. | +.|-|-|++| .+..+ .+.-++......+ |
T Consensus 192 -GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~--G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~gvh~--G-- 262 (1102)
T PLN02735 192 -GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL--GWKEYELEVMRDLADNVVII--CSIENIDPMGVHT--G-- 262 (1102)
T ss_pred -CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC--CCeEEEEEEEEcCCCCEEEE--eeEEEEcCCcccc--C--
Confidence 45588999999998752 45799999995 6 7899999976 22211 0111111000000 0
Q ss_pred eecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 241 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+... ..++ .+++.. ...++++|.++.++||+ ..+.+|++.+..+| ++|||||| |.+.
T Consensus 263 --~s~~-----vaPa~tL~~~~-----~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVN--PR~s 322 (1102)
T PLN02735 263 --DSIT-----VAPAQTLTDKE-----YQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMN--PRVS 322 (1102)
T ss_pred --CEEE-----EEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEec--CCCC
Confidence 0000 0011 122111 35689999999999998 57889999984345 79999999 4444
No 47
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.52 E-value=1.1e-12 Score=142.50 Aligned_cols=224 Identities=17% Similarity=0.140 Sum_probs=140.2
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCc--CCCccEE-EEccCch--------------------hHHHHHHHHHHhCCCceee
Q 019319 48 KLEGLARNKGILFVAIDQNRPLSD--QGPFDIV-LHKLTGK--------------------EWRQILEEYRQTHPEVTVL 104 (343)
Q Consensus 48 ~l~~~a~~~Gi~~v~ID~~~~l~~--q~~fDvi-lhK~t~~--------------------~~~~~l~~~~~~~p~v~Vi 104 (343)
.|+.+|+++|+.++.++.+..... +..+|.. .+-.++. +..-.+...+.++-|++-
T Consensus 18 ~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~~v~~aa~lae~lglpg- 96 (887)
T PRK02186 18 LLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPA- 96 (887)
T ss_pred HHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchhhHHHHHHHHHHhCcCC-
Confidence 378889999999998876542111 1011211 1111110 111122223334446554
Q ss_pred ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~ 184 (343)
++++++..++||..|-+.|++. +|++|++..+.+ .++..+. ...++||+|+||..+. +|.++.++.|
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~-~~e~~~~--~~~~~~PvVVKP~~g~---gS~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALAL-RAVALDA--LDGLTYPVVVKPRMGS---GSVGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHHH--HHhCCCCEEEEeCCCC---CCCCeEEECC
Confidence 5789999999999999999976 899999998853 2222221 2468999999998854 5678999999
Q ss_pred hhhHhcc--------CCCeEEEecccCCCcEEEEE--EECCEEE--EEEEecCCCCccccCccCCceeeecccccccccC
Q 019319 185 QYSLKKL--------EPPLVLQEFVNHGGVLFKVY--IVGEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 252 (343)
Q Consensus 185 ~~~L~~l--------~~p~v~QEFI~h~g~~~Kv~--VIG~~v~--~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~ 252 (343)
.++|.+. ..++++||||+ |..|-|- +.++.+. .+.++.... . ..|- .. + ..
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~---~------~~~v-e~----g-~~ 226 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGP---P------PHFV-EI----G-HD 226 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCC---C------CCeE-Ee----c-cc
Confidence 9887652 56899999995 7777664 4444433 234432210 0 0010 00 0 00
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 253 DDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
.+..+++. ..+.+.+++.++.++||+ ..+++|+++++ + .+||||||.=+|
T Consensus 227 ~P~~l~~~-----~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~~ 278 (887)
T PRK02186 227 FPAPLSAP-----QRERIVRTVLRALDAVGYAFGPAHTELRVRG-D--TVVIIEINPRLA 278 (887)
T ss_pred cCCCCCHH-----HHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-C--CEEEEEECCCCC
Confidence 12222211 135688999999999998 56889999974 3 489999998665
No 48
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.52 E-value=1.3e-12 Score=133.00 Aligned_cols=229 Identities=12% Similarity=0.130 Sum_probs=143.0
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC-------c------------------------CCCccEEEEccCc-hhHHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLS-------D------------------------QGPFDIVLHKLTG-KEWRQILE 92 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~-------~------------------------q~~fDvilhK~t~-~~~~~~l~ 92 (343)
...+++++|+++|++++.++.+..-. + ...+|+|+.=.+. .++. .+.
T Consensus 13 ~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~-~~a 91 (478)
T PRK08463 13 IAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENY-EFA 91 (478)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccCH-HHH
Confidence 45578889999999988887642110 0 1134555442111 0111 122
Q ss_pred HHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEE-Ee-cCCCCchHHHHhcCCCCcEEEecCC
Q 019319 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV-IE-RDASSIPDVVLKAGLTLPLVAKPLV 169 (343)
Q Consensus 93 ~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~-~~-~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (343)
+..+ .-|++++ .++++++.+.||..+.+.+.++ +||+|++.. +. .+.+++.+ ....++||+|+||..
T Consensus 92 ~~~e-~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~--~~~~igyPvvvKP~~ 161 (478)
T PRK08463 92 KAVE-DAGIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKI--FARKIGYPVILKASG 161 (478)
T ss_pred HHHH-HCCCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHH--HHHHhCCCEEEEeCC
Confidence 2222 2477766 6689999999999999999976 899977433 32 12222222 124689999999987
Q ss_pred CCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCccc
Q 019319 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQ 231 (343)
Q Consensus 170 a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~-~R~-slp~~~~~ 231 (343)
++ +|.+|.++.++++|... +.++++|+||+ +++.+-+-|+|+. +... .|. +..
T Consensus 162 gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~----- 232 (478)
T PRK08463 162 GG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQ----- 232 (478)
T ss_pred CC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCccc-----
Confidence 53 57899999999988552 35799999997 3677777777663 3222 221 110
Q ss_pred cCccCCceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCC
Q 019319 232 DLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 309 (343)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fP 309 (343)
.. ++.. ...+ +. .+++.. .+.+.++|.++.++||+.-+| +|++++. +| ++||+|||.=+
T Consensus 233 ---~~------~~~~--ie~~-P~~~l~~~~-----~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~ 293 (478)
T PRK08463 233 ---RR------HQKV--IEIA-PCPSISDNL-----RKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRI 293 (478)
T ss_pred ---cc------cCce--EEEC-CCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCc
Confidence 00 0000 0000 11 122221 356788999999999998777 9999975 34 69999999877
Q ss_pred CCc
Q 019319 310 GEV 312 (343)
Q Consensus 310 g~~ 312 (343)
+..
T Consensus 294 ~~~ 296 (478)
T PRK08463 294 QVE 296 (478)
T ss_pred CCC
Confidence 654
No 49
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.52 E-value=1.6e-12 Score=133.05 Aligned_cols=176 Identities=10% Similarity=0.180 Sum_probs=120.5
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
-|++++ .++++++.+.||..+.+++.++ +||+|++... -.+.+++.+ ....++||+|+||..++ +|
T Consensus 98 ~gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~--~a~~igyPvvIKp~~Gg---GG 165 (499)
T PRK08654 98 AGIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKE--IAEEIGYPVIIKASAGG---GG 165 (499)
T ss_pred CCCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHH--HHHHhCCCEEEEeCCCC---CC
Confidence 377665 5689999999999999999976 8999877643 112222222 23468999999998743 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCccccCccCCc
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAG 238 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~-~~~R~-slp~~~~~~~~~~~g 238 (343)
.+|.++.++++|.+. +.++++|+||. +++.+.|-|+||. ++ ...|. +... .
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqr--------r-- 234 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQR--------R-- 234 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeecccccc--------C--
Confidence 899999999988642 35799999997 4678888888764 22 22332 2110 0
Q ss_pred eeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
++... . ..++ .++++. .+.+.++|.++.+++|+.-.| ||++.++ | ++|++|||.=++..
T Consensus 235 ----~qk~i--e-~~Pa~~l~~~~-----~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 235 ----HQKLI--E-EAPSPIMTPEL-----RERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred ----ccceE--E-ECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 00000 0 0011 122222 356889999999999999887 9999964 3 69999999988755
No 50
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.52 E-value=1.8e-12 Score=143.15 Aligned_cols=227 Identities=16% Similarity=0.274 Sum_probs=145.9
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC-------c-----------------CCCccEEEEccCchhHHHHHHHHHHhCCC
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLS-------D-----------------QGPFDIVLHKLTGKEWRQILEEYRQTHPE 100 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~-------~-----------------q~~fDvilhK~t~~~~~~~l~~~~~~~p~ 100 (343)
.+-..++++++.|++.+.+|.+-... + ...+|.|+.-..+. ....+..-. +..|
T Consensus 577 ~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~-~~~~la~~l-e~~G 654 (1068)
T PRK12815 577 SSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQ-TAINLAKGL-EEAG 654 (1068)
T ss_pred hHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcH-HHHHHHHHH-HHCC
Confidence 33446788999999999998874211 0 12455555443332 112222222 2247
Q ss_pred ceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceee
Q 019319 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (343)
Q Consensus 101 v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m 179 (343)
+.++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+ ....++||+|+||..+. ++.+|
T Consensus 655 i~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~--~~~~igyPvVVKP~~~~---Gg~gv 721 (1068)
T PRK12815 655 LTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFA--FAKRIGYPVLIRPSYVI---GGQGM 721 (1068)
T ss_pred CeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHH--HHHhcCCCEEEEeCCCC---CCCCE
Confidence 7654 6799999999999999999986 899999998852 222222 12468999999997743 57899
Q ss_pred EEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECC--EEEEE--EEecCCCCccccCccCCceeeecccccc
Q 019319 180 SLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCA 248 (343)
Q Consensus 180 ~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~--~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~s~~ 248 (343)
.+++++++|.++ ..|+++|||| .|..+-|.++.| .+.+. ....-+ .|...-++..
T Consensus 722 ~iv~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e~----------~gv~sGds~~-- 787 (1068)
T PRK12815 722 AVVYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIEQ----------AGVHSGDSIA-- 787 (1068)
T ss_pred EEECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEeec----------cCCcCCCeeE--
Confidence 999999988653 5689999999 577777766644 33321 111000 0100000000
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 249 AASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 249 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
...+..+++.. .+.+++++.++.++||+. +++||+++++ + .+||||||.-+|
T Consensus 788 --v~pp~~l~~~~-----~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 788 --VLPPQSLSEEQ-----QEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred --EECCCCCCHHH-----HHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 00111222111 357899999999999965 6679999975 2 589999998887
No 51
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.51 E-value=1.6e-12 Score=132.21 Aligned_cols=230 Identities=13% Similarity=0.134 Sum_probs=142.0
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC-------c------------------------CCCccEEEEccC-chhHHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLS-------D------------------------QGPFDIVLHKLT-GKEWRQILEE 93 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~-------~------------------------q~~fDvilhK~t-~~~~~~~l~~ 93 (343)
..+++++|+++|+.++.++.+..-. + ...+|+|+.=.. ..+. ..+.+
T Consensus 14 a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~-~~~a~ 92 (472)
T PRK07178 14 AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSEN-AELAE 92 (472)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccC-HHHHH
Confidence 4468889999999998886653110 0 013455554110 0011 11223
Q ss_pred HHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCCchHHHHhcCCCCcEEEecCCCC
Q 019319 94 YRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVAD 171 (343)
Q Consensus 94 ~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~ 171 (343)
..++ -|++++ .++++++.+.||..+.+.|.++ +||+|++.... .+.+++.+ ....++||+|+||..++
T Consensus 93 ~~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~~~~e~~~--~~~~igyPvvvKp~~gg 162 (472)
T PRK07178 93 ICAE-RGIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLADLDEALA--EAERIGYPVMLKATSGG 162 (472)
T ss_pred HHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCCCHHHHHH--HHHHcCCcEEEEeCCCC
Confidence 3322 367655 6689999999999999999976 89998775421 12222222 23468999999998843
Q ss_pred CCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEE-EEEecCCCCccccCc
Q 019319 172 GSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRFSLPDVTKQDLS 234 (343)
Q Consensus 172 GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~-~~R~slp~~~~~~~~ 234 (343)
+|.+|.++.++++|.+. ..++++|+||. +++.+-|-|+|+. +.. ..|.- ...
T Consensus 163 ---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~-------s~~ 231 (472)
T PRK07178 163 ---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDC-------SIQ 231 (472)
T ss_pred ---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc-------ceE
Confidence 57899999999998642 34799999996 5777878777642 222 22210 000
Q ss_pred cCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 235 TSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 235 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
..+... ...+....+++.. .+.+.++|.++.++||+.-.| +|++++.+ | ++|++|||.=++-.
T Consensus 232 ------~~~~~~--~e~~P~~~l~~~~-----~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~~ 295 (472)
T PRK07178 232 ------RRNQKL--IEIAPSPQLTPEQ-----RAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQVE 295 (472)
T ss_pred ------ecCcce--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCCC
Confidence 000000 0000011222221 356789999999999997665 99999753 4 69999999877544
No 52
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.50 E-value=1.9e-12 Score=130.51 Aligned_cols=179 Identities=12% Similarity=0.178 Sum_probs=116.9
Q ss_pred CCcee-eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
-|+++ -.+++++..+.||..|.+.|.++ +||+|++. .+. +.+++.+ ....++||+|+||..++ +
T Consensus 98 ~gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~--~~~~~g~PvvvKP~~g~---g 164 (451)
T PRK08591 98 SGFTFIGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALA--IAKEIGYPVIIKATAGG---G 164 (451)
T ss_pred CCCceECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECCCC---C
Confidence 46664 47899999999999999999976 89998763 343 2222222 12468999999998853 4
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCccccCccCCce
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGV 239 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~ 239 (343)
|.++.++.++++|.+. +..+++||||+ +++.+-+-+++|. +....-+.. . ... ...
T Consensus 165 s~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~---~---~~~-~~~ 236 (451)
T PRK08591 165 GRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERDC---S---LQR-RHQ 236 (451)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEecccc---c---cee-cce
Confidence 7899999999988642 35699999996 3677887777642 332211000 0 000 000
Q ss_pred eeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 240 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 240 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
..+. . +....+++.. .+.+.++|.++.++||+.-.+ ||++++. +| ++||+|||.=++..
T Consensus 237 ~~~~---~----~p~~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~~ 296 (451)
T PRK08591 237 KVLE---E----APSPAITEEL-----RRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQVE 296 (451)
T ss_pred eEEE---E----CCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCcc
Confidence 0000 0 0001122111 467889999999999987555 9999975 34 69999999877643
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.46 E-value=3.3e-12 Score=140.90 Aligned_cols=178 Identities=12% Similarity=0.157 Sum_probs=120.3
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
.|+.++ .++++++.+.||..+.+++.++ +||+|++... -.+.+++.+. ...++||+|+||..++ +|
T Consensus 98 ~Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~~~eea~~~--ae~iGyPvIVKP~~GG---GG 165 (1143)
T TIGR01235 98 AGIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPETMEEVLDF--AAAIGYPVIIKASWGG---GG 165 (1143)
T ss_pred cCCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcCCHHHHHHH--HHHcCCCEEEEECCCC---CC
Confidence 466665 5689999999999999999976 8999886532 1122222221 2468999999997743 47
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCccccCccCCc
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAG 238 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~-~~~R~-slp~~~~~~~~~~~g 238 (343)
++|.++.++++|.+. +.++++|+||+ +++.+.|-|+||. ++ ...|. |...
T Consensus 166 rG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr----------- 233 (1143)
T TIGR01235 166 RGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR----------- 233 (1143)
T ss_pred CccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc-----------
Confidence 899999999888642 35799999996 4788999999775 22 23332 1110
Q ss_pred eeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.++... ..+....++++. .+.+.++|.++.++||..-+| ||++++. +| ++|+||||.=++..
T Consensus 234 ---r~qk~i--e~aPa~~L~~e~-----r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg-~~yfIEVNPRiqve 296 (1143)
T TIGR01235 234 ---RHQKVV--EVAPAPYLSREV-----RDEIAEYAVKLAKAVNYINAGTVEFLVDN-DG-KFYFIEVNPRIQVE 296 (1143)
T ss_pred ---cCceEE--EEeCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEeC-CC-cEEEEEeecCCCcc
Confidence 000000 000001122111 356889999999999987666 9999985 34 69999999988755
No 54
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.46 E-value=2.5e-12 Score=129.90 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=121.9
Q ss_pred HHHHHHhCCCcee-eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCC-CCchHHHHhcCCCCcEEEecC
Q 019319 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPL 168 (343)
Q Consensus 91 l~~~~~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~-~~~~~~l~~~~l~fP~VvKp~ 168 (343)
+|...+. -|+++ .=++.++..|+||..+.++++++ +||+|++..+..+. +.+........++||+|+||.
T Consensus 118 iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 4444433 46777 77788999999999999999865 89999998863221 112221222249999999998
Q ss_pred CCCCCCCceeeEEEeChhhHhcc------CCCeEEEecccCCCcEEEE--EEECCE-EEEE-EEecCCCCccccCcc-CC
Q 019319 169 VADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNHGGVLFKV--YIVGEA-IKVV-RRFSLPDVTKQDLST-SA 237 (343)
Q Consensus 169 ~a~GS~~sh~m~iv~~~~~L~~l------~~p~v~QEFI~h~g~~~Kv--~VIG~~-v~~~-~R~slp~~~~~~~~~-~~ 237 (343)
. +|| |+++.+|.++++|..+ ...+++|+||+ |+.+-| ++.++. +... .+..++..+ +.. ..
T Consensus 190 ~-GGS--S~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~E---i~~yr~ 261 (493)
T PRK06524 190 Y-GDS--GSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYPE---LTPYRG 261 (493)
T ss_pred C-CCC--CcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccceE---EEEccC
Confidence 6 333 8999999999998764 24589999995 787766 554432 3221 111121100 000 11
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC----CcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG----LRLFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG----l~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
|.+.. ...++.+++.. .+.++++|.++.++|+ -.+++||++++.++| ++|++|||.=||=
T Consensus 262 G~~~~--------~i~PA~L~~ei-----~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 262 GWCGN--------DIWPGALPPAQ-----TRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred CeEEE--------EEccCCCCHHH-----HHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 11110 01133333332 4578999999999993 455569999985334 7999999987764
No 55
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.46 E-value=7.3e-12 Score=125.31 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=78.7
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
.|++++ .++++++.+.||..|-+.|++. +||+|++..+. +.+++.+. ...++||+|+||..+ + +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~~~P~VvKP~~~--~-gs~ 151 (420)
T PRK00885 85 AGLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFT-DAEEALAY--LDEKGAPIVVKADGL--A-AGK 151 (420)
T ss_pred CCCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEeCCC--C-CCC
Confidence 477776 5678999999999999999976 89999999885 22223222 235899999999764 3 577
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC
Q 019319 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (343)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~ 215 (343)
++.++.++++|.+. ..++++||||+ |..|-|.++.+
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 152 GVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred cEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 89999999887541 24799999995 89998887754
No 56
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.46 E-value=3.2e-12 Score=141.35 Aligned_cols=230 Identities=16% Similarity=0.229 Sum_probs=147.4
Q ss_pred hHHHhhhhhcceEEEEeeCCCCC------------------------CcCCCccEEEEccCchhHH---HHHHH-HHHhC
Q 019319 47 PKLEGLARNKGILFVAIDQNRPL------------------------SDQGPFDIVLHKLTGKEWR---QILEE-YRQTH 98 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~l------------------------~~q~~fDvilhK~t~~~~~---~~l~~-~~~~~ 98 (343)
....+++++.|++++.+|.+... .++..+|+|+.-+.++... ..+.+ -.-+.
T Consensus 31 ~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~ 110 (1066)
T PRK05294 31 TQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK 110 (1066)
T ss_pred HHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH
Confidence 34778888999999999876421 0123678887766443211 11211 11122
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
-|+.++ -+++++..+.||..+.+.|.++ +||+|++..+++ .+++.+. ...++||+|+||..+ . +++
T Consensus 111 ~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~ig~PvVVKP~~g--~-gg~ 177 (1066)
T PRK05294 111 YGVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEV--AEEIGYPVIIRPSFT--L-GGT 177 (1066)
T ss_pred CCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHH--HHHcCCCeEEEcCCC--C-CCC
Confidence 467665 5789999999999999999976 899999999853 2223322 346899999999863 3 577
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECC---EEEEEEEecCCCCccccCccCCceeeecc
Q 019319 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPR 244 (343)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g-~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~ 244 (343)
++.++.++++|.+. ..++++||||+ | ..+-+-|+.| .+..+. +..++......+ .+...
T Consensus 178 Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~gih~-g~~~~--- 249 (1066)
T PRK05294 178 GGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIVC--SIENIDPMGVHT-GDSIT--- 249 (1066)
T ss_pred CeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEEe--eeeeccccceec-CCeEE---
Confidence 89999999998653 24799999995 5 6777777754 233221 111111000000 00000
Q ss_pred cccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 245 VSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 245 ~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
..++ .+++. ..+.++++|.++.++||+. .++||+.++..+| ++||+|||.=++
T Consensus 250 -------~~Pa~~l~~~-----~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 250 -------VAPAQTLTDK-----EYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred -------EeCCCCCCHH-----HHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 0011 12111 1346899999999999997 7789999985445 799999995544
No 57
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.45 E-value=3.8e-12 Score=140.48 Aligned_cols=233 Identities=15% Similarity=0.233 Sum_probs=149.4
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCC------------------------cCCCccEEEEccCchh--HHH-HHH-HHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKE--WRQ-ILE-EYR 95 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~------------------------~q~~fDvilhK~t~~~--~~~-~l~-~~~ 95 (343)
++-...++++++.|++++.+|.+.... +...+|+|+.-..++. +.. .+. +-.
T Consensus 27 ~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~ 106 (1050)
T TIGR01369 27 YSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGV 106 (1050)
T ss_pred chHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhH
Confidence 334457888999999999999875210 1236788887544321 111 111 112
Q ss_pred HhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCC
Q 019319 96 QTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (343)
Q Consensus 96 ~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~ 174 (343)
-+.-|+.++ .+++++..+.||..+.+.|.++ ++|+|++..+++ .++..+ ....++||+|+||..+ +
T Consensus 107 le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~--~~~~igyPvIVKP~~g--~- 173 (1050)
T TIGR01369 107 LEKYGVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHS-VEEALA--AAKEIGYPVIVRPAFT--L- 173 (1050)
T ss_pred HHHCCCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCC-HHHHHH--HHHHhCCCeEEECCCC--C-
Confidence 233477666 7899999999999999999976 899999998853 222222 2246899999999864 3
Q ss_pred CceeeEEEeChhhHhcc-------C--CCeEEEecccCCC-cEEEEEEECC---EEEEEEEecCCCCccccCccCCceee
Q 019319 175 KSHELSLAYDQYSLKKL-------E--PPLVLQEFVNHGG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFR 241 (343)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------~--~p~v~QEFI~h~g-~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~~ 241 (343)
+|.++.++.|+++|.+. . .++++||||+ | +.+-+-|++| .+.++ .+.-++......+. +.
T Consensus 174 gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~--G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g-~~-- 246 (1050)
T TIGR01369 174 GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA--GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTG-DS-- 246 (1050)
T ss_pred CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc--CceEEEEEEEEeCCCCEEEE--eeceeccCcceecC-ce--
Confidence 57889999999998653 1 5799999995 5 6777777754 22222 11112111100000 00
Q ss_pred ecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCC
Q 019319 242 FPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 242 ~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
+. ..++ .+++.. .+.++++|.++.++||+.-. .||++++.++| ++||+|||.-++
T Consensus 247 ---i~-----v~Pa~tl~~~~-----~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 247 ---IV-----VAPSQTLTDKE-----YQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred ---EE-----EecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 00 0011 121111 34688999999999999744 59999985444 799999997665
No 58
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.44 E-value=9.7e-12 Score=125.18 Aligned_cols=179 Identities=12% Similarity=0.188 Sum_probs=113.8
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
-|++++ .++++++.+.||..+.+.|.++ +|++|++.... .+.+++.+. ...++||+|+||..++ +|
T Consensus 98 ~g~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~~~~e~~~~--~~~~~~P~VvKP~~g~---gs 165 (450)
T PRK06111 98 EGIVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLEDAEEAIAI--ARQIGYPVMLKASAGG---GG 165 (450)
T ss_pred CCCeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcCCHHHHHHH--HHHhCCCEEEEeCCCC---CC
Confidence 366655 6689999999999999999976 89999863221 222222221 2458999999997743 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccccCccCCcee
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~ 240 (343)
+++.++.+.++|.+. +.++++||||+ ++..+.+.++++ ++.....+..+ +. .......
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~~-~~----~~~~~~~ 239 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWERECS-VQ----RRHQKVI 239 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeeccc-cc----ccccceE
Confidence 899999999887642 35799999996 345667666553 23322111100 00 0000000
Q ss_pred eecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 241 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
. ... ...+++.. ...++++|.++.++||+. ++.+|++++. +| ++||+|||.=|+.
T Consensus 240 ~-----~~p----~~~~~~~~-----~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g-~~~viEiN~R~~~ 295 (450)
T PRK06111 240 E-----EAP----SPFLDEET-----RKAMGERAVQAAKAIGYTNAGTIEFLVDE-QK-NFYFLEMNTRLQV 295 (450)
T ss_pred E-----ecC----CCCCCHHH-----HHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCC
Confidence 0 000 00111111 356889999999999995 4459999975 34 5999999987763
No 59
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.42 E-value=1.6e-11 Score=123.64 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=130.3
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHh
Q 019319 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~ 125 (343)
+.+.++|++.+++++.+.++.++ ...+.+..++ -|++++ -+.++++.+.||..+-+.|.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 45777777777777766554322 1233333332 367766 667899999999999999997
Q ss_pred ccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------------C
Q 019319 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------E 192 (343)
Q Consensus 126 ~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------------~ 192 (343)
+ +||+|++..+. +.+++.+. ...++||+|+||.. |+ .|.+|.++.+.+++.+. .
T Consensus 113 ~-------GIptp~~~~~~-~~~e~~~~--~~~~g~PvVVKp~~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFT-DPAAAKKY--IKEQGAPIVVKADG--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEcCC--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 6 89999999885 32233332 23589999999974 33 57899999999876431 2
Q ss_pred CCeEEEecccCCCcEEEEEEECC-E-EEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHH-
Q 019319 193 PPLVLQEFVNHGGVLFKVYIVGE-A-IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPL- 269 (343)
Q Consensus 193 ~p~v~QEFI~h~g~~~Kv~VIG~-~-v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~- 269 (343)
.++++|||| .|..+-|.++.| + ++... .+.. ...+|+++...+.+.. ....|. ..++ .+.
T Consensus 180 ~~vlIEefi--~G~E~Sv~~~~dG~~~~pl~----~~~d------hkr~~d~d~g~ntggm---g~~sp~-p~l~-~~~~ 242 (434)
T PLN02257 180 SEVVVEEFL--DGEEASFFALVDGENAIPLE----SAQD------HKRVGDGDTGPNTGGM---GAYSPA-PVLT-PELE 242 (434)
T ss_pred CeEEEEECC--CCCEEEEEEEECCCcEEEEE----eeee------cccccCCCCCCCCCCC---eeEecC-CCCC-HHHH
Confidence 579999999 488998866543 2 22111 0000 1112332222211100 000010 0011 122
Q ss_pred ---HHHHHH---HHHHHhCCcEeE---EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 270 ---LERLAK---ELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 270 ---~~~lA~---~l~~~lGl~l~G---vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.++++. ++.++.|+.+.| +|++++.++| .+||+|+|.-||..
T Consensus 243 ~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdp 293 (434)
T PLN02257 243 SKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDP 293 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCC
Confidence 223332 334578887666 8999872233 58999999999954
No 60
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.40 E-value=1.7e-11 Score=135.60 Aligned_cols=231 Identities=16% Similarity=0.223 Sum_probs=147.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC------------------------cCCCccEEEEccCchhHH---HHHHH--HH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEWR---QILEE--YR 95 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~------------------------~q~~fDvilhK~t~~~~~---~~l~~--~~ 95 (343)
+-...++++++.|++++.+|.+.... +...+|+|+.=+.++... ..+.+ ..
T Consensus 29 sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~L 108 (1068)
T PRK12815 29 SGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGIL 108 (1068)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHH
Confidence 44457788899999999998765210 123678888754432221 11211 12
Q ss_pred HhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCC
Q 019319 96 QTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (343)
Q Consensus 96 ~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~ 174 (343)
+.-|+.++ -+++++..+.||..+.+.|.++ +||+|++..+.+ .+++.+ ....++||+|+||..+.
T Consensus 109 -e~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~--~~~~igyPvVVKP~~g~--- 174 (1068)
T PRK12815 109 -EQYGVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALA--FAEKIGFPIIVRPAYTL--- 174 (1068)
T ss_pred -HHCCCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHH--HHHHcCCCEEEEECcCC---
Confidence 23467765 6789999999999999999976 899999999853 222222 12468999999998643
Q ss_pred CceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECCE---EEEEEEecCCCCccccCccCCceee
Q 019319 175 KSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFR 241 (343)
Q Consensus 175 ~sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g-~~~Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~~~ 241 (343)
++.++.++.|+++|.+. ..++++||||+ | ..+-|-|++|. +..+. +..+++...+.+ |
T Consensus 175 gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~--G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi~t--G--- 245 (1068)
T PRK12815 175 GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA--GWKEIEYEVMRDRNGNCITVC--NMENIDPVGIHT--G--- 245 (1068)
T ss_pred CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC--CCeEEEEEEEEcCCCCEEEEE--eceecccccccC--C---
Confidence 46788999999988653 24799999995 5 68888888652 33221 111221111100 0
Q ss_pred ecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 242 FPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 242 ~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
++.. ..++ .+++. ....++++|.++.++||+. .+++|+.++.++| ++||+||| |.+.
T Consensus 246 -~s~~-----v~Pa~~l~~~-----~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~ 304 (1068)
T PRK12815 246 -DSIV-----VAPSQTLTDD-----EYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVS 304 (1068)
T ss_pred -ceEE-----EecCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcc
Confidence 0000 0011 11111 1245889999999999994 4569999986434 79999999 5554
No 61
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.37 E-value=1.9e-11 Score=122.85 Aligned_cols=138 Identities=14% Similarity=0.241 Sum_probs=94.7
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChh-hHHHHhcCHHHHHHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQC 122 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~-~ai~~~~dR~~~~~~ 122 (343)
.....+++.|++.+++++.+.++.++ .+-+.+..++ -|++++-|. .+.+.+.||..+-+.
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~ 115 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSL 115 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHH
Confidence 34445666777777766665444322 1223232222 377777554 477889999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-----------
Q 019319 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----------- 191 (343)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l----------- 191 (343)
|.++ +||+|++..+. +.+++.+.+ ..++||+|+||... +.|.+|.++.+.+++.+.
T Consensus 116 l~~~-------gIpt~~~~~~~-~~~ea~~~~--~~~~~PvVVKp~~~---~~gkGV~vv~~~eel~~a~~~~~~~~~~g 182 (426)
T PRK13789 116 MKEA-------KIPTASYKTFT-EYSSSLSYL--ESEMLPIVIKADGL---AAGKGVTVATEKKMAKRALKEIFKDKKFG 182 (426)
T ss_pred HHHc-------CCCCCCeEeeC-CHHHHHHHH--HhcCCCEEEEeCCC---CCCCcEEEECCHHHHHHHHHHHHhhcccc
Confidence 9976 89999998885 322233322 35799999999742 257899999999876541
Q ss_pred --CCCeEEEecccCCCcEEEEEEECC
Q 019319 192 --EPPLVLQEFVNHGGVLFKVYIVGE 215 (343)
Q Consensus 192 --~~p~v~QEFI~h~g~~~Kv~VIG~ 215 (343)
...+|+|||| .|..+-|.++.+
T Consensus 183 ~~~~~vlIEEfl--~G~E~Sv~~~~d 206 (426)
T PRK13789 183 QSGNQVVIEEFM--EGQEASIFAISD 206 (426)
T ss_pred CCCCeEEEEECc--CCeEEEEEEEEC
Confidence 1369999999 589999988765
No 62
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.36 E-value=5e-11 Score=119.19 Aligned_cols=180 Identities=12% Similarity=0.128 Sum_probs=111.5
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCc-EEEecCCCCCCCCc
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~GS~~s 176 (343)
-|++++ .++++++.+.||..+.+.|+++ +||+|++..+.+ .+++.+. ...++|| +|+||..+ + +|
T Consensus 87 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~--~~~~g~P~~VvKp~~~--~-gg 153 (423)
T TIGR00877 87 AGIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSY--IQEKGAPAIVVKADGL--A-AG 153 (423)
T ss_pred CCCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHH--HHhcCCCeEEEEECCC--C-CC
Confidence 366665 6788999999999999999976 899999998852 2223332 2468999 99999664 3 56
Q ss_pred eeeEEEeChhhHhcc------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCccccCccCCcee
Q 019319 177 HELSLAYDQYSLKKL------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 177 h~m~iv~~~~~L~~l------------~~p~v~QEFI~h~g~~~Kv~VI--G~~v~~~--~R~slp~~~~~~~~~~~g~~ 240 (343)
.++.++.+.+++.+. ..++++||||+ |..|-|.++ |+.+.+. .|.--.... ++ .+.
T Consensus 154 ~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~~-~~----~~~- 225 (423)
T TIGR00877 154 KGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKRALE-GD----KGP- 225 (423)
T ss_pred CCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeeeccc-CC----CCC-
Confidence 799999999887542 24799999995 788888776 4433322 111000000 00 000
Q ss_pred eecccccccccCCCCCCCccccCCCC---hHHHHHHHHHHHHHh---CC---cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 241 RFPRVSCAAASADDADLDPCVAELPP---RPLLERLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~p~---~~~~~~lA~~l~~~l---Gl---~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
+... .....|. ..++. .+..++++..+.++| |+ .++.+|++++. +| +||+|||.=||-
T Consensus 226 --~~g~-------~~~~~p~-~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g--~~viEin~R~g~ 292 (423)
T TIGR00877 226 --NTGG-------MGAYSPA-PVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG--PKVLEFNCRFGD 292 (423)
T ss_pred --CCCC-------CceecCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC--cEEEEEEccCCC
Confidence 0000 0001110 01111 122345555566666 32 56679999975 34 799999999984
Q ss_pred c
Q 019319 312 V 312 (343)
Q Consensus 312 ~ 312 (343)
.
T Consensus 293 ~ 293 (423)
T TIGR00877 293 P 293 (423)
T ss_pred c
Confidence 4
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.35 E-value=2.2e-11 Score=134.78 Aligned_cols=177 Identities=16% Similarity=0.229 Sum_probs=117.4
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEE--EecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
-|++++ .++++++.|.||..+.+.+.++ +||+|++.. +. +.+++.+ ....++||+|+||..++ +
T Consensus 102 ~Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~--~a~~iGyPvVVKP~~Gg---G 168 (1146)
T PRK12999 102 AGITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALE--FAEEIGYPIMLKASAGG---G 168 (1146)
T ss_pred cCCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECCCC---C
Confidence 366654 6799999999999999999976 899876553 32 2222222 23468999999998854 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~-~R~-slp~~~~~~~~~~~ 237 (343)
|++|.++.++++|.+. +.++++|+||+ +++.+-|-|+|+. +... .|- |... ...
T Consensus 169 GrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvqr-------r~q 240 (1146)
T PRK12999 169 GRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQR-------RHQ 240 (1146)
T ss_pred CCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEccccceee-------cCc
Confidence 7899999999988652 35799999996 4566788777642 2222 221 1100 000
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
....+ +....+++.. .+.+.++|.++.+++|+.-.| +|++++.+ | .+|+||||.=++..
T Consensus 241 k~ie~---------aP~~~L~~~~-----~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqve 300 (1146)
T PRK12999 241 KVVEI---------APAPGLSEEL-----RERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQVE 300 (1146)
T ss_pred cEEEE---------cCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCCc
Confidence 00000 0001122111 356889999999999998766 99999853 4 59999999877654
No 64
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.32 E-value=4.8e-12 Score=110.73 Aligned_cols=149 Identities=23% Similarity=0.368 Sum_probs=76.8
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-
Q 019319 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL- 191 (343)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l- 191 (343)
|.||+.+++.|+++ +|++|.+...... ....+|+|+||..++ +|.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~~-------gi~~P~~~~~~~~----------~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKEL-------GIPVPTTLRDSEP----------EPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTTT--------S--------EES----------S--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHcc-------CCCCCCccccccc----------cccCCcEEEEeCCCC---CCCCeEEECCchhhcccc
Confidence 68999999999976 8999955544211 124789999999854 56789999999887754
Q ss_pred CCCeEEEecccCCCcEEEEEEECCE----EEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCCh
Q 019319 192 EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPR 267 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv~VIG~~----v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~ 267 (343)
..-.++|||| .|.-+-+.++.+. +..+.|..+.. . .+.|.|. |... +.. .+..
T Consensus 61 ~~~~i~Qe~i--~G~~~Sv~~l~~~~~~~~l~~~rq~i~~-~-------~~~~~~~-----G~~~-~~~-------~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFI--EGEPYSVSFLASGGGARLLGVNRQLIGN-D-------DGRFRYC-----GGIV-PAD-------TPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEE-----EEEE-S-----------HH
T ss_pred ccceEEeeee--CCEEeEEEEEEeCCceEEEEechHhhcc-c-------cceeeec-----cccc-ccC-------CchH
Confidence 3334999999 5999988877653 33344443211 0 0112111 1101 111 1125
Q ss_pred HHHHHHHHHHHHHh-CCc-EeEEEEEEeCCCCCeEEEEEecC
Q 019319 268 PLLERLAKELRRQL-GLR-LFNLDIIREHGTRDQFYVIDINY 307 (343)
Q Consensus 268 ~~~~~lA~~l~~~l-Gl~-l~GvDvi~~~~~g~~~~ViDVN~ 307 (343)
+.+.++|.+++++| ||. ++|||+|.++ + ++||||||-
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINP 156 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINP 156 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcC
Confidence 67899999999999 875 5589999975 2 589999995
No 65
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.31 E-value=1.6e-10 Score=128.62 Aligned_cols=177 Identities=16% Similarity=0.216 Sum_probs=117.8
Q ss_pred CCcee-eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCc-EEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 99 PEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~-~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
-|+++ -.++++++.+.||..+-+++.++ +||+|+ +.++. +.+++.+ ....++||+|+||..++ +|
T Consensus 97 ~Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~--~a~~igyPvVVKP~~gg---GG 163 (1201)
T TIGR02712 97 AGIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALE--AAKEIGYPVMLKSTAGG---GG 163 (1201)
T ss_pred cCCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHH--HHHhcCCeEEEEECCCC---CC
Confidence 36654 46689999999999999999976 899855 55554 2222222 23468999999998743 47
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEe-cCCCCccccCccCCc
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAG 238 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~-slp~~~~~~~~~~~g 238 (343)
.+|.++.++++|.+. +.++++||||+ +++.+-|.+++| ++... .|- +... . +..
T Consensus 164 ~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr---~----~~k 235 (1201)
T TIGR02712 164 IGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR---R----NQK 235 (1201)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe---c----Ccc
Confidence 899999999988631 34699999997 468889988875 33332 221 1100 0 000
Q ss_pred eeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.. .. .+. .+++.. .+.+.++|.++.++||+.-++ +|++.+..+| ++||+|||.=++..
T Consensus 236 ~v-----ee-----~Pap~l~~~~-----~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 236 VV-----EE-----TPAPNLPPET-----RQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred EE-----EE-----cCCCCCCHHH-----HHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 00 00 011 111111 356889999999999987555 9999986444 69999999877544
No 66
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.27 E-value=4.2e-10 Score=113.42 Aligned_cols=215 Identities=10% Similarity=0.072 Sum_probs=126.9
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L 123 (343)
..+.+++.|++.+++++..-++.+| ......++.+. |++++ .+.++++.+.||..|.+.|
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d~~l-----------------~~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l 113 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPDPVL-----------------ATPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLM 113 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCChHH-----------------HHHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHH
Confidence 4456777888888777655433221 11333344444 78876 8899999999999999999
Q ss_pred HhccccCCCCCccCCcEE-EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeCh----hh-Hhc------c
Q 019319 124 ADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ----YS-LKK------L 191 (343)
Q Consensus 124 ~~~~l~~~~~~I~~P~~~-~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~----~~-L~~------l 191 (343)
.++ +|++|++. ...+. ++.... ...++||+|+||... + .|.+|.++.+. ++ +.. .
T Consensus 114 ~~~-------gIptp~~~~~~~~~-~e~~~~--~~~~~~PvVVKP~~~--s-ggkGV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 114 ERH-------NIPGNINFNACFSE-KDAARD--YITSMKDVAVKPIGL--T-GGKGVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HHC-------CcCCCcccceeCCh-HHHHHH--HHhhCCCEEEEeCCC--C-CCCCeEEecCchhhHHHHHHHHHHHhCC
Confidence 975 89997543 44322 222221 234699999999663 3 67799988532 22 221 1
Q ss_pred CCCeEEEecccCCCcEEEE--EEECCEEEEE--EEecCCCCccccCccCCceeeecccccccccCC----CCCCCccccC
Q 019319 192 EPPLVLQEFVNHGGVLFKV--YIVGEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD----DADLDPCVAE 263 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv--~VIG~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~----~~~~~~~~~~ 263 (343)
..++|+|||+ .|..|-| ++-|+.++.. .+.- +....++...+.| . -|+.++ ...+++..
T Consensus 181 ~~~viIEEfl--~G~E~Svd~~~dg~~~~~l~~~~d~-~r~~~~d~gp~tG-------g-mG~~s~~~~~~p~l~~~~-- 247 (435)
T PRK06395 181 DGVVLIEKKM--TGEEFSLQAFSDGKHLSFMPIVQDY-KRAYEGDHGPNTG-------G-MGSISDRDFSLPFLSKDA-- 247 (435)
T ss_pred CCcEEEEeec--CCceEEEEEEEcCCeEEEeccccee-eecccCCCCCccC-------C-CccccCCCCCCCCCCHHH--
Confidence 3579999999 4777765 5556665432 1000 0000010000100 0 011110 00111111
Q ss_pred CCChHHHHHHHHHHHHHhCC------cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 264 LPPRPLLERLAKELRRQLGL------RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 264 ~p~~~~~~~lA~~l~~~lGl------~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
.+.+.+++.++.++||. .++.+++++++ +| +||||+|.=+|
T Consensus 248 ---~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~g 294 (435)
T PRK06395 248 ---PERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP-NG--VKVIEINARFA 294 (435)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC-CC--cEEEEEeCCCC
Confidence 34568899999999994 45579999964 34 89999998777
No 67
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.21 E-value=1.1e-09 Score=106.25 Aligned_cols=185 Identities=20% Similarity=0.300 Sum_probs=129.9
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCceee--ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCch
Q 019319 74 PFDIVLHKLTGKEWRQILEEYRQTHPEVTVL--DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (343)
Q Consensus 74 ~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi--Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (343)
..|+++.+...+...++-.+|.+. |+.|+ -+.+++..+.||..+++.+++. +|++|++..++ +.++..
T Consensus 66 ~Idv~~P~~~~~~l~~~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-------~ipvp~~~~v~-t~~el~ 135 (329)
T PF15632_consen 66 GIDVFVPGRNRELLAAHRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEAN-------GIPVPPYWRVR-TADELK 135 (329)
T ss_pred CCeEEEcCccHHHHHHHHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHhC-------CCCCCCEEEeC-CHHHHH
Confidence 345556555554445666777776 65554 5589999999999999999975 89999999995 333333
Q ss_pred HHHHhcCCCCc---EEEecCCCCCCCCceeeEEEe-ChhhHhcc----------------------CCCeEEEecccCCC
Q 019319 152 DVVLKAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKKL----------------------EPPLVLQEFVNHGG 205 (343)
Q Consensus 152 ~~l~~~~l~fP---~VvKp~~a~GS~~sh~m~iv~-~~~~L~~l----------------------~~p~v~QEFI~h~g 205 (343)
. +.+.+++| +.+||..+. ++.|..++. +.+.+..+ -+|++++||+ +|
T Consensus 136 ~--a~~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL--~G 208 (329)
T PF15632_consen 136 A--AYEELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL--PG 208 (329)
T ss_pred H--HHHhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC--CC
Confidence 2 22446666 999999954 567888888 44444432 3579999999 59
Q ss_pred cEEEEEEECC--EEE-EEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 019319 206 VLFKVYIVGE--AIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG 282 (343)
Q Consensus 206 ~~~Kv~VIG~--~v~-~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG 282 (343)
.+|.|=|+.+ ++. ++-|+... . ...+ -.++.+.++|.++++.+|
T Consensus 209 ~EySVD~l~~~G~viaaV~R~K~G-----~---------------------~q~l-------~~~~~l~e~a~~l~~~~~ 255 (329)
T PF15632_consen 209 PEYSVDCLADEGRVIAAVPRRKLG-----R---------------------RQVL-------ENDEELIELARRLAEAFG 255 (329)
T ss_pred CeEEEEEEecCCEEEEEEEEEecC-----c---------------------eeEE-------EECHHHHHHHHHHHHHhC
Confidence 9998777655 565 45555431 0 0000 013567999999999999
Q ss_pred Cc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 283 LR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 283 l~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
|+ ++||++..|. +| .++++|||.=|+
T Consensus 256 l~g~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 256 LDGLFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred CCceEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 97 5689999975 45 689999998765
No 68
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.19 E-value=1e-09 Score=107.60 Aligned_cols=227 Identities=19% Similarity=0.285 Sum_probs=138.7
Q ss_pred hhhhhcceEEEEeeCCCC-CC-----------------------cCCCccEEEEccCchh--HHH-HHHH-HHHhCCCc-
Q 019319 51 GLARNKGILFVAIDQNRP-LS-----------------------DQGPFDIVLHKLTGKE--WRQ-ILEE-YRQTHPEV- 101 (343)
Q Consensus 51 ~~a~~~Gi~~v~ID~~~~-l~-----------------------~q~~fDvilhK~t~~~--~~~-~l~~-~~~~~p~v- 101 (343)
.+.++.|+.++.||.+-. +. ++...|+++.=+..+. .+. .+.+ ...+.-||
T Consensus 23 ~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~ 102 (400)
T COG0458 23 KALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVE 102 (400)
T ss_pred HHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCE
Confidence 355678999999988741 11 1235588777766531 111 1111 11111244
Q ss_pred eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
+|..++++|+++.||+...+.++++ ++++|.. +.+ ..+...+ ....++||+|+||..+- ++.+..+
T Consensus 103 vvgs~~eaI~iaeDr~~fke~m~ei-------gi~~P~~-~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~i 168 (400)
T COG0458 103 VVGSDPEAIEIAEDKKLFKEAMREI-------GIPVPSR-IAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGGI 168 (400)
T ss_pred EEecCHHHhhhhhhHHHHHHHHHHc-------CCCCCcc-ccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCceeE
Confidence 4689999999999999999999987 8999933 332 1111222 23568999999998853 4568899
Q ss_pred EeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCccccCccCCceeeeccccccc
Q 019319 182 AYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA 249 (343)
Q Consensus 182 v~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~ 249 (343)
++|+++|..+ ..+++++|+|. ++..|.+-|+-|. +.++. +.-|+.+..+.+.+.... +.
T Consensus 169 ~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc--~men~dp~gvhtgdsi~v------ap 239 (400)
T COG0458 169 AYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVC--NMENLDPMGVHTGDSITV------AP 239 (400)
T ss_pred EeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEE--eCCccccccccccceeee------cc
Confidence 9999999874 24689999996 5667766666543 22221 233333332222211110 00
Q ss_pred ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 250 ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 250 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
++ ... |. ....++..+.++.+.+|..= .+|++..+.++| +|||||||.=++
T Consensus 240 aq-tl~--d~------eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 240 AQ-TLT--DK------EYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred cc-ccc--cH------HHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 00 001 00 12345668999999999981 129999988665 899999995544
No 69
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.17 E-value=3.8e-10 Score=113.38 Aligned_cols=178 Identities=17% Similarity=0.237 Sum_probs=117.1
Q ss_pred CCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
.|+..+-| +++++++.||+.+-+++.+. |||+|++..-- .+.++..+ ....++||||+||..+. +|
T Consensus 98 ~gl~fiGP~~~~i~~mgdK~~ar~~~~~a-------GVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~~Gg---Gg 165 (449)
T COG0439 98 AGLTFIGPSAEAIRRMGDKITARRLMAKA-------GVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAAAGG---GG 165 (449)
T ss_pred cCCeeeCcCHHHHHHhhhHHHHHHHHHHc-------CCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEECCCC---Cc
Confidence 56777776 46788888999999999976 88888876210 01112222 23467899999997743 57
Q ss_pred eeeEEEeChhhHhcc------------CCC-eEEEecccCCCcEEEEEEECCEE----EEEEEe-cCCCCccccCccCCc
Q 019319 177 HELSLAYDQYSLKKL------------EPP-LVLQEFVNHGGVLFKVYIVGEAI----KVVRRF-SLPDVTKQDLSTSAG 238 (343)
Q Consensus 177 h~m~iv~~~~~L~~l------------~~p-~v~QEFI~h~g~~~Kv~VIG~~v----~~~~R~-slp~~~~~~~~~~~g 238 (343)
.||.+|.++++|.+. ..| +++|+||+. .+-+=+-|+||.. ....|- |++... ..
T Consensus 166 ~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr~-qk------ 237 (449)
T COG0439 166 RGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRRH-QK------ 237 (449)
T ss_pred ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCCc-cc------
Confidence 899999999998762 344 999999973 4456788888863 233444 432100 00
Q ss_pred eeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+ ...+....++++. ...+-+.|+++++.+|-.-+| +.++.+. +| ++|++|+|.==+-.
T Consensus 238 ------v---ieeapsp~~~~e~-----r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlqve 296 (449)
T COG0439 238 ------V---IEEAPSPLLTEEL-----REKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQVE 296 (449)
T ss_pred ------e---eeecCCCCCCHHH-----HHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecccccC
Confidence 0 0000011111111 345678889999999988888 9999986 44 68999999754433
No 70
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.10 E-value=2.7e-09 Score=95.02 Aligned_cols=165 Identities=14% Similarity=0.214 Sum_probs=101.2
Q ss_pred ChhhHHHHhcCHH----HHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeE
Q 019319 105 DPPYAIQHLHNRQ----SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (343)
Q Consensus 105 Dp~~ai~~~~dR~----~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~ 180 (343)
|++.|+..+.||= .+.++-.+++ ...+|.=.+.... +..++ ...-+||+|+| +|++- .+-|=.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG----~e~FPLieQt~yp-nh~em-----~s~~~fPvVvK--vG~~h-~G~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLG----PEKFPLIEQTYYP-NHREM-----LSAPRFPVVVK--VGHAH-AGMGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHH----TTTS-B---EEES-SGGGG-----CS-SSSSEEEE--ESS-S-TTTTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhC----CcccccceeeecC-Chhhh-----ccCCCCCEEEE--Ecccc-CceeEE
Confidence 7899999999994 2333333332 1234433333331 11111 12358999999 65544 344556
Q ss_pred EEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCC
Q 019319 181 LAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD 253 (343)
Q Consensus 181 iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~ 253 (343)
.+.|...+.++ +.-+-++-||+ .-.|++|--||+++.+.+|+|+. +.|+++.|.=-+.
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis----~nWK~N~gsa~lE---------- 132 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKANTGSAMLE---------- 132 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESS----STSSTTSSSEEEE----------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEcccc----ccccccccchhee----------
Confidence 99999888764 66678899996 47899999999999999999973 2366554422111
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecCC
Q 019319 254 DADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYF 308 (343)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~~~~~g~~~~ViDVN~f 308 (343)
..+..+..+.-+.++++.+ ||+++++|.|... +| +.||+|||..
T Consensus 133 ---------qi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds 177 (203)
T PF02750_consen 133 ---------QIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDS 177 (203)
T ss_dssp ---------EE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-T
T ss_pred ---------ecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCC
Confidence 2223455688889999999 9999999999986 57 6799999975
No 71
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.06 E-value=8.4e-10 Score=100.98 Aligned_cols=163 Identities=16% Similarity=0.276 Sum_probs=101.4
Q ss_pred CHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc--
Q 019319 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (343)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-- 191 (343)
||....+++.++ ++|+|+..... .+.+++.+ ...+++||+++||..+. ++.+|.+++|+++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~--~a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALE--FAEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHH--HHHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHH--HHHhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 788888888877 88888877551 12222222 23458999999998754 47899999999998752
Q ss_pred -----------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCccccCccCCceeeecccccccccCCCC
Q 019319 192 -----------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDA 255 (343)
Q Consensus 192 -----------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~-~~~R~-slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~ 255 (343)
+.++++++|+. +.+.+-|=|++|. +. ...|- +.+. +.++. . . .+...
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~ds------i-----~----~~P~~ 131 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQDS------I-----E----EAPAQ 131 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEEE------E-----E----EES-S
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc-ccccc------e-----e----Eeecc
Confidence 67999999996 4467777777762 22 22333 2221 11110 0 0 01111
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 256 DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 256 ~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.+++.. .+.+++.|.++++.+|..=.| |=++.+..++ ++||+|||..-+-.
T Consensus 132 ~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~~~ 183 (211)
T PF02786_consen 132 TLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQRE 183 (211)
T ss_dssp SS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--TT
T ss_pred ccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCCCc
Confidence 222221 356889999999999998777 9999986444 89999999877644
No 72
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.5e-08 Score=96.22 Aligned_cols=225 Identities=18% Similarity=0.268 Sum_probs=142.1
Q ss_pred HHHhhhhhcceEEEEeeCCC--CCCc---------------------CCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019319 48 KLEGLARNKGILFVAIDQNR--PLSD---------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (343)
Q Consensus 48 ~l~~~a~~~Gi~~v~ID~~~--~l~~---------------------q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi 104 (343)
++.-.|.+.|++++.+|-=. |-.. +...|.|+.-+-. .....|.++.++ |..||
T Consensus 26 EvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEA-I~td~L~elE~~--G~~VV 102 (394)
T COG0027 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEA-IATDALVELEEE--GYTVV 102 (394)
T ss_pred HHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhh-hhHHHHHHHHhC--CceEc
Confidence 35557788999999998633 1111 1234444433321 334566666665 88899
Q ss_pred ChhhHHHHhcCHHHHHHHHHh-ccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEe
Q 019319 105 DPPYAIQHLHNRQSMLQCVAD-MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~-~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~ 183 (343)
=...+.+.++||..+-++.++ + ++||-++...++ .++..+ ....++||+||||+.+ | -+|+=+++.
T Consensus 103 P~ArAt~ltMnRegiRrlAAeeL-------glpTs~Y~fa~s-~~e~~~--a~~~iGfPcvvKPvMS--S-SGkGqsvv~ 169 (394)
T COG0027 103 PNARATKLTMNREGIRRLAAEEL-------GLPTSKYRFADS-LEELRA--AVEKIGFPCVVKPVMS--S-SGKGQSVVR 169 (394)
T ss_pred cchHHHHhhhcHHHHHHHHHHHh-------CCCCcccccccc-HHHHHH--HHHHcCCCeecccccc--c-CCCCceeec
Confidence 999999999999986666554 4 788888887753 222322 3467999999999982 3 589999999
Q ss_pred ChhhHhcc-----------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccC
Q 019319 184 DQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 252 (343)
Q Consensus 184 ~~~~L~~l-----------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~ 252 (343)
+++++.+. +.-+++++||+ .||-+-.+ ..|..-++ +.|+-+- |...
T Consensus 170 ~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---fd~EiTlL------tvr~~~~~----------~~Fc~PI----GHrq 226 (394)
T COG0027 170 SPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---FDFEITLL------TVRAVDGT----------GSFCAPI----GHRQ 226 (394)
T ss_pred CHHHHHHHHHHHHhcCCCCCCcEEEEEEec---ceEEEEEE------EEEEecCC----------CCcCCCc----cccc
Confidence 99988763 45699999996 45543322 11111111 0011000 0000
Q ss_pred CCCCCCcccc--CCCC--hHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 253 DDADLDPCVA--ELPP--RPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 253 ~~~~~~~~~~--~~p~--~~~~~~lA~~l~~~lG-l~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
.+.++.+.|. ++.. .+.-+.+|+++.++|| ..+|||.+.+. |++.|+-||---|.=+ |+
T Consensus 227 ~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDT-Gm 290 (394)
T COG0027 227 EDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDT-GM 290 (394)
T ss_pred CCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCC-ce
Confidence 1111111111 1111 2345789999999996 68999999985 4689999999999877 65
No 73
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.00 E-value=3.6e-08 Score=100.74 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=89.9
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~ 124 (343)
...+++.|++.+++++.+.++.++ .+.+.+..++ -|++++ .+.++++.+.||..|-+.|.
T Consensus 58 ~~~l~~~a~~~~id~Vi~g~E~~l------------------~~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~ 118 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIGPEEPL------------------FAGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMW 118 (486)
T ss_pred HHHHHHHHHHhCCCEEEECCchHH------------------HHHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHH
Confidence 345777888887777665443221 1223333322 477764 78899999999999999999
Q ss_pred hccccCCCCCccCC-cEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhh---------H----hc
Q 019319 125 DMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----KK 190 (343)
Q Consensus 125 ~~~l~~~~~~I~~P-~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~---------L----~~ 190 (343)
++ +||+| ++..+. +.+++.+.+ .. .+|+|+||... +.|.+|.++.+.++ + .+
T Consensus 119 ~~-------gIpt~~~~~~~~-~~~ea~~~~--~~-~~PvVVKP~~~---aggkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 119 KY-------SIPGRLRYKVFY-DVEEAAKFI--EY-GGSVAIKPARQ---AGGKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred Hc-------CcCCCccceEeC-CHHHHHHHH--hh-cCCEEEeeCCC---CCCCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 75 89997 677664 332333322 22 36999998663 35789999998652 1 11
Q ss_pred ----------cCCCeEEEecccCCCcEEEEEEECC
Q 019319 191 ----------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (343)
Q Consensus 191 ----------l~~p~v~QEFI~h~g~~~Kv~VIG~ 215 (343)
.+.++|+|||| .|..+-|.++.|
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL--~G~E~SV~al~d 217 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKV--DGVEYTLQVLTD 217 (486)
T ss_pred HHHhHhhccCCCCeEEEEEcc--CCeEEEEEEEEC
Confidence 13579999999 489998877754
No 74
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.96 E-value=4.8e-09 Score=93.04 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=72.3
Q ss_pred cCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeCh-hhHhc--------cCCCeEEEecccC-CC
Q 019319 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSLKK--------LEPPLVLQEFVNH-GG 205 (343)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~-~~L~~--------l~~p~v~QEFI~h-~g 205 (343)
.+|+|++.. +.+.+.+.+...+ -+|+||+.+.| +.++..+... ..+.. -..|+++|+|++. ..
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~---~~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG---DIVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS---SEEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC---CEEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 369999884 4344444444443 39999999654 5678777763 22222 2458999999985 22
Q ss_pred cEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---C
Q 019319 206 VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---G 282 (343)
Q Consensus 206 ~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l---G 282 (343)
=|.|+++++++...+.+|-.. .++|+.+ .. .|....... + .+...++|.++...| |
T Consensus 84 GDkRii~~nG~~~~av~R~P~---~gd~R~N--------~~-~Gg~~~~~~-------l--t~~e~~i~~~i~~~L~~~G 142 (173)
T PF02955_consen 84 GDKRIILFNGEPSHAVRRIPA---KGDFRSN--------LA-AGGSAEPAE-------L--TEREREICEQIGPKLREDG 142 (173)
T ss_dssp -EEEEEEETTEE-SEEEEE-----SS-S-----------GG-GTSCEEEEE-----------HHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCEEhHHeecCCC---CCCceee--------ec-cCCceeecC-------C--CHHHHHHHHHHHHHHhhcC
Confidence 389999999998866444321 1233322 11 111111111 1 244567777777666 8
Q ss_pred CcEeEEEEEEeCCCCCeEEEEEecCC
Q 019319 283 LRLFNLDIIREHGTRDQFYVIDINYF 308 (343)
Q Consensus 283 l~l~GvDvi~~~~~g~~~~ViDVN~f 308 (343)
+-++|+|+| + + |+.|||-+
T Consensus 143 l~f~GiDvi---g-~---~l~EiNvt 161 (173)
T PF02955_consen 143 LLFVGIDVI---G-D---KLTEINVT 161 (173)
T ss_dssp --EEEEEEE---T-T---EEEEEE-S
T ss_pred cEEEEEecc---c-c---ceEEEecc
Confidence 999999999 2 2 68899975
No 75
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.85 E-value=6.4e-08 Score=91.39 Aligned_cols=196 Identities=15% Similarity=0.256 Sum_probs=113.5
Q ss_pred HHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCC
Q 019319 95 RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (343)
Q Consensus 95 ~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~ 174 (343)
.+++++++++|| ...||+.+++.|.+.. .-.=-.|.|..+. +.+++.+.+..-+ -+++||.. ||
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~--Gs- 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDN--GS- 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCC--CC-
Confidence 456789999998 4689999999999631 0022489999885 2234444444333 78999988 45
Q ss_pred CceeeEEEeChhh----------------------Hhc-----c-CCCeEEEecccC---C--CcEEEEEEECC---EEE
Q 019319 175 KSHELSLAYDQYS----------------------LKK-----L-EPPLVLQEFVNH---G--GVLFKVYIVGE---AIK 218 (343)
Q Consensus 175 ~sh~m~iv~~~~~----------------------L~~-----l-~~p~v~QEFI~h---~--g~~~Kv~VIG~---~v~ 218 (343)
.+.++..+...++ |.. + +.++|+||.|+- + -.||||.|--+ .|.
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 4555554443321 111 1 448999999984 3 46889999843 344
Q ss_pred E---EEEecCCC-CccccCccCCce-eeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEE
Q 019319 219 V---VRRFSLPD-VTKQDLSTSAGV-FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDII 291 (343)
Q Consensus 219 ~---~~R~slp~-~~~~~~~~~~g~-~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~l~GvDvi 291 (343)
+ +.|.+.++ +.+|- . ..|. ..+.+.-. ..... .... .-..+....+|..+.+.+|. .-+|+|+-
T Consensus 147 vtg~~~Rva~~~~ivTN~-~-~GG~~~~~~~~l~-----~~~~~-~~~~-~~l~~~a~~ia~~le~~~~~~~gElGiDl~ 217 (262)
T PF14398_consen 147 VTGIVARVAKPGSIVTNL-S-QGGTALPFEEVLR-----QSEEA-EKIR-EELEDLALEIAQALEKHFGGHLGELGIDLG 217 (262)
T ss_pred EEEEEEEEcCCCCceecc-C-CCceecCHHHHHH-----hhhhH-HHHH-HHHHHHHHHHHHHHHHhcCCceeEEEEEEE
Confidence 3 36666543 22211 0 0111 11111000 00000 0000 00012234555666666774 67799999
Q ss_pred EeCCCCCeEEEEEecCCCCCccCCcch
Q 019319 292 REHGTRDQFYVIDINYFPGEVWENAGV 318 (343)
Q Consensus 292 ~~~~~g~~~~ViDVN~fPg~~~gv~~~ 318 (343)
+|. +| ++++||||.-|+-. .+.+.
T Consensus 218 iD~-~g-~iWliEvN~kP~~~-~~~~~ 241 (262)
T PF14398_consen 218 IDK-NG-KIWLIEVNSKPGKF-DFRDI 241 (262)
T ss_pred EcC-CC-CEEEEEEeCCCCcc-hhhcc
Confidence 996 56 89999999999977 65553
No 76
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.85 E-value=2.7e-07 Score=89.88 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=140.4
Q ss_pred HHhhhhhcceEEEEeeCCCCCCc-CCCccEEEEccCch------------------hHHHHHHHHHHhCCCceeeChhhH
Q 019319 49 LEGLARNKGILFVAIDQNRPLSD-QGPFDIVLHKLTGK------------------EWRQILEEYRQTHPEVTVLDPPYA 109 (343)
Q Consensus 49 l~~~a~~~Gi~~v~ID~~~~l~~-q~~fDvilhK~t~~------------------~~~~~l~~~~~~~p~v~ViDp~~a 109 (343)
+..+|..+|+.+..+|++.+=.- |---+.+..-..|. .+-...-+++..+ +.|.=++++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~ 93 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDA 93 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHH
Confidence 45578889999999998763322 21112333222221 1112222333332 567788999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHh
Q 019319 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (343)
Q Consensus 110 i~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~ 189 (343)
++...||+..-+.|.++ |+++|.|..+++ .+++...+ ..++||.|+|...+ |= .++|-.++.+.+++.
T Consensus 94 l~~~qdR~~eK~~l~~~-------Gi~va~~~~v~~-~~el~~~~--~~~g~p~VlKtr~g-GY-DGkGQ~~i~~~~~~~ 161 (375)
T COG0026 94 LRIAQDRLVEKQFLDKA-------GLPVAPFQVVDS-AEELDAAA--ADLGFPAVLKTRRG-GY-DGKGQWRIRSDADLE 161 (375)
T ss_pred HHHHhhHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCceEEEeccc-cc-cCCCeEEeeCcccch
Confidence 99999999999999976 999999999963 33444433 45889999998773 44 788999999887665
Q ss_pred cc-------CCCeEEEecccCCCcEEEEEEEC---CEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCc
Q 019319 190 KL-------EPPLVLQEFVNHGGVLFKVYIVG---EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (343)
Q Consensus 190 ~l-------~~p~v~QEFI~h~g~~~Kv~VIG---~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (343)
.. ..| |+++||+- .+.+.|.++- +.+.++ +-.-|+. .+|++.+.- .++.+++
T Consensus 162 ~~~~~~~~~~~~-vlE~fV~F-~~EiSvi~aR~~~G~~~~y--P~~eN~h------~~gIl~~si--------aPa~i~~ 223 (375)
T COG0026 162 LRAAGLAEGGVP-VLEEFVPF-EREISVIVARSNDGEVAFY--PVAENVH------RNGILRTSI--------APARIPD 223 (375)
T ss_pred hhHhhhhccCce-eEEeeccc-ceEEEEEEEEcCCCCEEEe--cccceee------ecCEEEEEE--------ecCcCCH
Confidence 41 334 99999975 4455666652 222211 1111111 123332211 1233322
Q ss_pred cccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 260 CVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
.. ++..+++|.++.+.|+. .++|+-+.+.. +| +++|.|+=-=|-
T Consensus 224 ~~-----~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg-~llvNEiAPRvH 268 (375)
T COG0026 224 DL-----QAQAEEMAKKIAEELDYVGVLAVEFFVTP-DG-ELLVNEIAPRVH 268 (375)
T ss_pred HH-----HHHHHHHHHHHHHHcCceEEEEEEEEEEC-CC-cEEEeeccCCCC
Confidence 21 35678999999999986 57789998876 35 789999865554
No 77
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.83 E-value=1.4e-07 Score=87.24 Aligned_cols=162 Identities=21% Similarity=0.212 Sum_probs=98.1
Q ss_pred HHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEec
Q 019319 88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (343)
Q Consensus 88 ~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (343)
.+.+++|. ++-|. +++||+.|.||+.++..|.+ .+++|.|..+- ...--+|+||
T Consensus 92 tri~E~~~-~nLG~----S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~-------------~~~~k~ViKp 145 (307)
T COG1821 92 TRIYEEYV-ENLGC----SPRAIRVAADKRLTYKALRD--------AVKQPPTREWA-------------EEPKKYVIKP 145 (307)
T ss_pred HHHHHHHh-HhhCC----CHHHHhHhhhHHHHHHHHhh--------hccCCCccccc-------------cCCceEEecc
Confidence 34555553 32332 68999999999999999995 47888877541 1222689999
Q ss_pred CCCCCCCCceeeEEEeChhhHhccCCCeEEEecccCCCcEEEE-EEECCEEEEEEEecCCCCccccCccCCcee-eeccc
Q 019319 168 LVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKV-YIVGEAIKVVRRFSLPDVTKQDLSTSAGVF-RFPRV 245 (343)
Q Consensus 168 ~~a~GS~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~g~~~Kv-~VIG~~v~~~~R~slp~~~~~~~~~~~g~~-~~~~~ 245 (343)
..+||+. ++....+... -+++||||+ |.-+.| ..+|+++..- ..|+ +.-.| .+.-.
T Consensus 146 ~dgCgge---~i~~~~~~pd------~~i~qEfIe--G~~lSVSL~~GEkv~pL--------svNr---Qfi~~~~~~~~ 203 (307)
T COG1821 146 ADGCGGE---GILFGRDFPD------IEIAQEFIE--GEHLSVSLSVGEKVLPL--------SVNR---QFIIFAGSELV 203 (307)
T ss_pred cccCCcc---eeeccCCCcc------hhhHHHhcC--CcceEEEEecCCccccc--------eech---hhhhhccceee
Confidence 9998762 3333333222 289999996 444444 5566664422 1111 10011 11111
Q ss_pred ccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC--CcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 246 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG--LRLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 246 s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG--l~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
+..+ .+.++ .+..+...+.|.++.+.++ -.++|||++..+ .+||||||.=|-
T Consensus 204 y~gg----~~pi~-----he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvIEINpR~T 257 (307)
T COG1821 204 YNGG----RTPID-----HELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVIEINPRPT 257 (307)
T ss_pred eccC----cCCCC-----cHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEEEecCCCC
Confidence 2111 12221 1224556788889988887 457799999862 489999998775
No 78
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.75 E-value=5e-08 Score=86.55 Aligned_cols=151 Identities=16% Similarity=0.247 Sum_probs=92.8
Q ss_pred CccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEE
Q 019319 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLF 208 (343)
Q Consensus 134 ~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-----~~p~v~QEFI~h~g~~~ 208 (343)
+||+|+|..+.+ .+++.+. ...++||+|+|+... |. .++|..++.+++++.+. ..++++|+||+. .+.+
T Consensus 5 gip~~~~~~i~~-~~~l~~a--~~~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~Ei 78 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEA--AESIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DREI 78 (172)
T ss_dssp T--B-EEEEESS-HHHHHHH--HHHHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEEE
T ss_pred CCCCCCeEEECC-HHHHHHH--HHHcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEEE
Confidence 899999999963 2334332 345899999998774 44 68999999999988763 679999999984 5666
Q ss_pred EEEEECCE---EEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-c
Q 019319 209 KVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-R 284 (343)
Q Consensus 209 Kv~VIG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~ 284 (343)
-|.|+.+. +.++ +..-|.. .+|..... -.++.+++.+ ..+.+++|.++.+.|+. .
T Consensus 79 SvivaR~~~G~~~~y--p~~en~~------~~~il~~s--------~~Pa~i~~~~-----~~~a~~ia~~i~~~l~~vG 137 (172)
T PF02222_consen 79 SVIVARDQDGEIRFY--PPVENVH------RDGILHES--------IAPARISDEV-----EEEAKEIARKIAEALDYVG 137 (172)
T ss_dssp EEEEEEETTSEEEEE--EEEEEEE------ETTEEEEE--------EESCSS-HHH-----HHHHHHHHHHHHHHHTSSE
T ss_pred EEEEEEcCCCCEEEE--cCceEEE------ECCEEEEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCcEE
Confidence 66666432 1111 0000111 11222211 1234443333 46688999999999975 6
Q ss_pred EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 285 LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 285 l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+|+|.+.+.. +|++.||.||-.=|.-.
T Consensus 138 v~~VE~Fv~~-~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 138 VLAVEFFVTK-DGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp EEEEEEEEET-TSTEEEEEEEESS--GG
T ss_pred EEEEEEEEec-CCCEEEEEeccCCccCc
Confidence 7889999985 46459999998666544
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.74 E-value=6.7e-07 Score=85.55 Aligned_cols=218 Identities=20% Similarity=0.211 Sum_probs=130.1
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccC----------chhH-HHHHHHHHHhC-------C------
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT----------GKEW-RQILEEYRQTH-------P------ 99 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t----------~~~~-~~~l~~~~~~~-------p------ 99 (343)
++.+-+.+.|.+.|.++-.++.=.|..-++..+.++--.+ ++.| ...+.++..+- .
T Consensus 19 vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~ 98 (389)
T COG2232 19 VNTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALR 98 (389)
T ss_pred ecchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeecccccccc
Confidence 3455688899999999988887766665666666553222 2233 22333333211 0
Q ss_pred -------CceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCC
Q 019319 100 -------EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (343)
Q Consensus 100 -------~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (343)
++.=-+|-..+..+.||...+..|..+ +++.|.+--++ . ...-.+++|.||+.|.|
T Consensus 99 ~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e--------~--~~~gekt~IlKPv~GaG 161 (389)
T COG2232 99 TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIE--------P--LEEGEKTLILKPVSGAG 161 (389)
T ss_pred ccCccccccccCCcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhh--------h--hhhcceeeEEeeccCCC
Confidence 111225555999999999999999977 67777543221 1 11135599999999755
Q ss_pred CCCceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECC----EEEEEEEecCCCCccccCccCCceeeecccccc
Q 019319 173 SAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 248 (343)
Q Consensus 173 S~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~----~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~ 248 (343)
. + +-++.-.++.. -.++++|||| .|+-+.|-+|++ ...++-+--+ ++ .....+.|.| ++
T Consensus 162 G--~--~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~----~~~~~~~f~Y----~G 224 (389)
T COG2232 162 G--L--VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DG----LRGEYSQFVY----KG 224 (389)
T ss_pred c--e--eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-cc----ccccccccee----cc
Confidence 3 2 33332222322 3789999999 699999999988 3333322211 10 0011122222 11
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecC
Q 019319 249 AASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINY 307 (343)
Q Consensus 249 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~-GvDvi~~~~~g~~~~ViDVN~ 307 (343)
.+.|-. .. ..++++++|..+-..|||-=- |||++..+ .| +||||||-
T Consensus 225 -------NlTP~~-~~-~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVNP 272 (389)
T COG2232 225 -------NLTPFP-YE-EVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVNP 272 (389)
T ss_pred -------CcCCCc-ch-hhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEecC
Confidence 111111 01 125679999999999998644 79999975 34 89999994
No 80
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.74 E-value=4.9e-07 Score=88.93 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
-++++.=..++++...||..+-+.|.++ +|++|+++ . +. ..+.||+|+||.. |+ ++++
T Consensus 107 ~~~p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~--g~-ggkG 164 (358)
T PRK13278 107 FKVPMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPG--AK-GGRG 164 (358)
T ss_pred CCCCcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCC--CC-CCCC
Confidence 3566666778999999999999999976 89999973 2 11 1257999999954 43 6899
Q ss_pred eEEEeChhhHhcc------------CCCeEEEecccCCCcEEE--EEEE
Q 019319 179 LSLAYDQYSLKKL------------EPPLVLQEFVNHGGVLFK--VYIV 213 (343)
Q Consensus 179 m~iv~~~~~L~~l------------~~p~v~QEFI~h~g~~~K--v~VI 213 (343)
+.++.+++++.+. ...+++||||. |..|- +|+.
T Consensus 165 v~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s 211 (358)
T PRK13278 165 YFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYS 211 (358)
T ss_pred eEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEe
Confidence 9999999887541 46799999995 77664 4543
No 81
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.70 E-value=1.8e-06 Score=82.61 Aligned_cols=194 Identities=20% Similarity=0.238 Sum_probs=114.5
Q ss_pred ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEE-ecC------CCCchHH--HHhcCCCCcEEEecCCCCCCCC
Q 019319 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERD------ASSIPDV--VLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-~~~------~~~~~~~--l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
||.+....+.||..+.+++.+. +|++|+.+.. .+. ..+..+. ........++|+||.. || .
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~-------gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~--G~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDY-------GIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPAN--GS-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHHh-------cCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCC--CC-C
Confidence 8899999999999999999975 8999994331 111 1111111 1122234799999976 56 6
Q ss_pred ceeeEEEeChhh---------Hhc----cC-CCeEEEeccc-CC---------CcEEEEEEE-C-C--EEE-EEEEecCC
Q 019319 176 SHELSLAYDQYS---------LKK----LE-PPLVLQEFVN-HG---------GVLFKVYIV-G-E--AIK-VVRRFSLP 226 (343)
Q Consensus 176 sh~m~iv~~~~~---------L~~----l~-~p~v~QEFI~-h~---------g~~~Kv~VI-G-~--~v~-~~~R~slp 226 (343)
++++.++...++ +.+ +. ..+++||+|. |+ =..+||.++ . + ++. ++.|-+..
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 888888776652 111 11 2799999997 32 246788777 2 2 333 34666522
Q ss_pred CCccccCccCCcee---eeccc-ccc-cccCCCCC--CCccc------cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEE
Q 019319 227 DVTKQDLSTSAGVF---RFPRV-SCA-AASADDAD--LDPCV------AELPPRPLLERLAKELRRQL-GLRLFNLDIIR 292 (343)
Q Consensus 227 ~~~~~~~~~~~g~~---~~~~~-s~~-~~~~~~~~--~~~~~------~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~ 292 (343)
......+.. .|.. +.... ... +....... ..|.. ...|.-+++.++|.++++.+ ++.+.|.|+.+
T Consensus 166 ~~~~DN~~~-Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvai 244 (285)
T PF14397_consen 166 GSGVDNFHQ-GGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAI 244 (285)
T ss_pred CCcccccCC-CCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEE
Confidence 111111111 1211 11111 000 00000111 12221 24566677899999998665 89999999999
Q ss_pred eCCCCCeEEEEEecCC--CCCc
Q 019319 293 EHGTRDQFYVIDINYF--PGEV 312 (343)
Q Consensus 293 ~~~~g~~~~ViDVN~f--Pg~~ 312 (343)
+. +| +++||.|+. ||+.
T Consensus 245 t~-~G--p~llE~N~~~~pgl~ 263 (285)
T PF14397_consen 245 TE-DG--PVLLEGNARWDPGLM 263 (285)
T ss_pred cC-CC--cEEEEeeCCCCCCcH
Confidence 86 45 899999999 9977
No 82
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.67 E-value=6.9e-07 Score=89.42 Aligned_cols=179 Identities=15% Similarity=0.239 Sum_probs=116.2
Q ss_pred CCCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccC-CcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 98 HPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 98 ~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~-P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
..|+..|-| +++|+.+.||...-+++... ++|+ |-+--...+.+.+.+ ....++||+++|+..++ +
T Consensus 93 ~~Gi~FiGP~~~aIrdMG~K~~sk~im~~A-------gVp~vpG~~g~~qs~e~~~~--~a~eIgyPvMiKa~~GG---G 160 (670)
T KOG0238|consen 93 DAGITFIGPPPSAIRDMGDKSTSKQIMKAA-------GVPLVPGYHGEDQSDEEAKK--VAREIGYPVMIKATAGG---G 160 (670)
T ss_pred HcCCeEECCCHHHHHHhcchHHHHHHHHhc-------CCccccCcccccccHHHHHH--HHHhcCCcEEEEeccCC---C
Confidence 357888876 56788899999988888865 6654 433322112222222 34679999999987754 4
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCEEE---E-EEEe-cCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAIK---V-VRRF-SLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~v~---~-~~R~-slp~~~~~~~~~~~ 237 (343)
+.+|-++.+++++.+. +..++++.||. +.|-+-|=|.||+.- . -.|- |+. ..
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav~l~ERdCSvQ--------RR- 230 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAVHLGERDCSVQ--------RR- 230 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEEEecccccchh--------hh-
Confidence 7899999999887652 55799999998 467778888888732 1 1221 110 00
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+++- - ..+.-..++++. ...+.+.|+++++++|-.-+| |.+|.|.+ + .+|++|.|.==..+
T Consensus 231 -----nQKi-i-EEaPap~l~~e~-----R~~lgeaAv~aa~avgY~~aGTVEFi~D~~-~-~FyFmEmNTRLQVE 292 (670)
T KOG0238|consen 231 -----NQKI-I-EEAPAPNLPEET-----RRALGEAAVRAAKAVGYVGAGTVEFIVDSK-D-NFYFMEMNTRLQVE 292 (670)
T ss_pred -----hhhh-h-hcCCCCCCCHHH-----HHHHHHHHHHHHHhhCCcccceEEEEEcCC-C-cEEEEEeeceeeec
Confidence 0000 0 000000111111 346789999999999999999 99999974 4 69999999754444
No 83
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.66 E-value=5.6e-07 Score=88.09 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=94.5
Q ss_pred cCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc--
Q 019319 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (343)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-- 191 (343)
.||..+++.|.+. ||++|++..- . ..+.||+||||..|.|. .|.+..++.|.++|...
T Consensus 125 ~dKk~~yk~L~~a-------GI~~Pk~~~~---p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEKA-------GIPYPKLFKD---P---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHHc-------CCCCceeecC---c---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 4566777888865 8999998851 1 24789999999886553 37899999999988753
Q ss_pred ---C---------CCeEEEecccCCCcEE--EEEEE--CCEE--EEEEEecCCCCccccCccCCceeeeccccccccc--
Q 019319 192 ---E---------PPLVLQEFVNHGGVLF--KVYIV--GEAI--KVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS-- 251 (343)
Q Consensus 192 ---~---------~p~v~QEFI~h~g~~~--Kv~VI--G~~v--~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~-- 251 (343)
+ ..+++||||. |..| -+|+- -+++ ....||---|+ +|....+...+....
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~~ 254 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNEE 254 (366)
T ss_pred hhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhcccC
Confidence 1 2357999995 6665 45654 4533 23333221222 222221110000000
Q ss_pred ---CCCCCCCcc-ccCCCChHHHHHHHHHHHHHhC-------CcEeEEEEEEeCCCCCeEEEEEecC
Q 019319 252 ---ADDADLDPC-VAELPPRPLLERLAKELRRQLG-------LRLFNLDIIREHGTRDQFYVIDINY 307 (343)
Q Consensus 252 ---~~~~~~~~~-~~~~p~~~~~~~lA~~l~~~lG-------l~l~GvDvi~~~~~g~~~~ViDVN~ 307 (343)
...+. .|. ..+. ..+.+.+++.++.++++ ..-|.+|.++++ ++ .+||+|||.
T Consensus 255 p~~vv~G~-~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~-~~~V~EInp 317 (366)
T PRK13277 255 PRYIEVGH-EPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DL-DFVVYDVAP 317 (366)
T ss_pred CceEEEcC-ccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CC-cEEEEEEcC
Confidence 00000 011 1111 23567788888888877 566779999875 34 689999984
No 84
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.5e-07 Score=86.52 Aligned_cols=220 Identities=13% Similarity=0.177 Sum_probs=132.0
Q ss_pred CccEEEEccCch------hHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCC
Q 019319 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147 (343)
Q Consensus 74 ~fDvilhK~t~~------~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~ 147 (343)
..|.||.|-..- ..+..+.-+.. .|++.||++.++....||--+..-|.++..+.+...+|.=.+...- +-
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~qy--agiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yP-nH 231 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQY--AGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYP-NH 231 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHHh--cCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecC-Cc
Confidence 447777775431 22333333333 4899999999999999996544444444333333345543333321 11
Q ss_pred CCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEE
Q 019319 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV 220 (343)
Q Consensus 148 ~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~ 220 (343)
+... ..-.||+||| .++|- -+-+-..|.|.++|.++ +...-+|-||+ .-.|+||=-||..+.++
T Consensus 232 ----K~m~-s~~tyPvVVk--vghah-sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKay 302 (488)
T KOG3895|consen 232 ----KEML-SQPTYPVVVK--VGHAH-SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAY 302 (488)
T ss_pred ----hhhc-cCCCCcEEEE--ecccc-cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHH
Confidence 1111 2346999999 54443 24455677888888764 55677899997 46789999999999999
Q ss_pred EEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCe
Q 019319 221 RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQ 299 (343)
Q Consensus 221 ~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~~~~~g~~ 299 (343)
+|.|+- +.|+++.|.--..+++ + .+.-+.-...+.+.+ ||+++.||.+... +| +
T Consensus 303 mRtsIs----gnWKtNtGSamLEQIa-----------------m--seRyklwvdtcse~fGgldICav~alhsK-dG-r 357 (488)
T KOG3895|consen 303 MRTSIS----GNWKTNTGSAMLEQIA-----------------M--SERYKLWVDTCSEMFGGLDICAVKALHSK-DG-R 357 (488)
T ss_pred hhhhhc----cCcccCchHHHHHHHH-----------------H--HHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-h
Confidence 999873 3466654421111111 0 122234445555655 5899999999875 56 5
Q ss_pred EEEEEecC--CCCCccCCcchHHHHHhHHhhhc
Q 019319 300 FYVIDINY--FPGEVWENAGVRAHIYRLPIKPD 330 (343)
Q Consensus 300 ~~ViDVN~--fPg~~~gv~~~~~~l~~~l~~~i 330 (343)
=||+|||. .|=+..-.++-.+.+.+++..++
T Consensus 358 d~i~eV~d~smpliGeh~eeDrql~~~Lvvskm 390 (488)
T KOG3895|consen 358 DYIIEVMDSSMPLIGEHQEEDRQLISELVVSKM 390 (488)
T ss_pred hheeeeccccccccccchhHHHHHHHHHHHHHh
Confidence 58999997 45555233333344555444444
No 85
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.55 E-value=6.6e-07 Score=84.52 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=102.3
Q ss_pred eeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCC-CCce-eeE
Q 019319 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKSH-ELS 180 (343)
Q Consensus 103 ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS-~~sh-~m~ 180 (343)
++=+....+-+.+|=.+|..-.++ ++++|+|+.+++..+. .-..|.||+|+||-.+.|. ..++ +..
T Consensus 102 ~lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~-----~~~el~FPvILKP~mgg~~~~~araKa~ 169 (415)
T COG3919 102 PLPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDT-----LVDELTFPVILKPGMGGSVHFEARAKAF 169 (415)
T ss_pred CCCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhhh-----hhhheeeeEEecCCCCCcceeehhhhee
Confidence 444566777777888888887776 8999999999743221 2346999999999885321 1111 233
Q ss_pred EEeChhhHhcc---------CCCeEEEecccCCCcEEEE---EEECCEEE--EEEEecCCCCccccCccCCceeeecccc
Q 019319 181 LAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKV---YIVGEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (343)
Q Consensus 181 iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv---~VIG~~v~--~~~R~slp~~~~~~~~~~~g~~~~~~~s 246 (343)
.+.+.++++.. ...+|+||||+-+|---.+ ++-.++-+ +..|+... |+
T Consensus 170 ~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq-------------yP----- 231 (415)
T COG3919 170 TAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ-------------YP----- 231 (415)
T ss_pred eccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc-------------CC-----
Confidence 45555666542 4469999999966543222 22223211 11222110 00
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
.+..+.....+.++...+-+.|+++-+..+-+ |..||+..|..+| .+-++|||-=|+
T Consensus 232 ------vdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 232 ------VDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred ------cccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 01111112234555444555566655555544 5569999998888 799999999887
No 86
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.51 E-value=3.2e-06 Score=88.62 Aligned_cols=173 Identities=17% Similarity=0.275 Sum_probs=112.5
Q ss_pred CCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccC-CcEEEEecCCCCchHHH-HhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDASSIPDVV-LKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~-P~~~~~~~~~~~~~~~l-~~~~l~fP~VvKp~~a~GS~~ 175 (343)
.|+..|-| ++.++.+.||...-.+-.+. ++|+ |.+-- ..+...+.. -..+.+||+++|-.+++ +
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt~~---~~~~~ee~~~fa~~~gyPvmiKA~~GG---G 170 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGTDG---PIETIEEALEFAEEYGYPVMIKAAAGG---G 170 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCC---CcccHHHHHHHHHhcCCcEEEEEccCC---C
Confidence 48888876 67889999998755444433 4443 21110 011122211 13568999999987754 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~----v~~~~R~-slp~~~~~~~~~~~ 237 (343)
+++|-+|.++++|.+. +..++++.||. +.+-+-|=++||+ |+...|- |.. ..
T Consensus 171 GRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQ--------RR- 240 (1149)
T COG1038 171 GRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQ--------RR- 240 (1149)
T ss_pred ccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchh--------hc-
Confidence 8999999999988752 56799999998 4667789999986 4444443 221 00
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCC
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 308 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~f 308 (343)
|++- -..+.-..++++. ..++-+-|.++++..|-.-+| +.++++.+ | ++|+||||-=
T Consensus 241 -----hQKV--VE~APa~~L~~~~-----R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNPR 298 (1149)
T COG1038 241 -----HQKV--VEVAPAPYLSPEL-----RDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNPR 298 (1149)
T ss_pred -----ccee--EEecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecCc
Confidence 1100 0001112233322 356788999999999999999 99999974 5 6899999953
No 87
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.43 E-value=6.7e-06 Score=83.56 Aligned_cols=178 Identities=13% Similarity=0.195 Sum_probs=115.3
Q ss_pred CCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCcc-CCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVD-VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~-~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
.|++.|-| +.+|+.+.||...-.+..+. ++| +|-+.=...+.+.+.. ....++||+.+|...++ ++
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~A-------gVp~VPG~~g~~qd~~~~~~--~A~eiGyPVlIKAsaGG---GG 165 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAEA-------GVPTVPGYHGPIQDAAELVA--IAEEIGYPVLIKASAGG---GG 165 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCCcccCHHHHHH--HHHhcCCcEEEEeccCC---CC
Confidence 58888876 57899999999877777765 555 4544322111111111 23579999999976643 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCccccCccCCc
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAG 238 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~----v~~~~R~-slp~~~~~~~~~~~g 238 (343)
.+|-++.+.+++.+. +.-++++.|+.. .|-+-+=|+||+ |+.-.|- |+.- .
T Consensus 166 KGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSlQR--------R-- 234 (645)
T COG4770 166 KGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSLQR--------R-- 234 (645)
T ss_pred CceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccchhh--------h--
Confidence 899999999887652 567999999984 566788888886 2222333 3210 0
Q ss_pred eeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
|++-- ..+.-.-++++. .+.+-+-|++++++.|-.=+| |-+|++.+ + .+|++|+|.==..+
T Consensus 235 ----hQKVI--EEAPaP~l~~~~-----R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRLQVE 296 (645)
T COG4770 235 ----HQKVI--EEAPAPFLTEET-----REAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRLQVE 296 (645)
T ss_pred ----cchhh--hcCCCCCCCHHH-----HHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeecceecc
Confidence 00000 000001111111 346778999999999999999 99999874 4 49999999755444
No 88
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.42 E-value=6.4e-06 Score=78.53 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=35.7
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc--
Q 019319 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (343)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-- 190 (343)
+..|..+.+.+.+.........-.+|.+..+..+........ ...-.--+|+||.. |+ .+.|+.++.+.+++.+
T Consensus 19 l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~-~~~~~~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~ 94 (292)
T PF03133_consen 19 LTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYF-EKNPKNLWIVKPSN--GS-RGRGIKLFNNLEQILRFS 94 (292)
T ss_dssp E-----------------------------HHHHHHHHHHHH-HTTS---EEEEES----------EEEES-HHHHHCCH
T ss_pred hhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHH-hcCCCCEEEEeccc--cC-CCCCceecCCHHHHHHHh
Confidence 345555555554431110000114677777642221222211 11112369999976 44 6889999999999885
Q ss_pred --cCCCeEEEecccCC----C--cEEEEEEEC
Q 019319 191 --LEPPLVLQEFVNHG----G--VLFKVYIVG 214 (343)
Q Consensus 191 --l~~p~v~QEFI~h~----g--~~~Kv~VIG 214 (343)
...++|+|+||+.+ | .|+|+||+=
T Consensus 95 ~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 95 KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 47789999999863 4 477988873
No 89
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.33 E-value=2.2e-05 Score=77.75 Aligned_cols=219 Identities=18% Similarity=0.276 Sum_probs=134.5
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHh-cCHHHHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHL-HNRQSMLQCVA 124 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~-~dR~~~~~~L~ 124 (343)
-+.++++|++.+++++.|-++.||.. .....|.++ |++|.=|.....++ .+|..+-..++
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~pL~~-----------------GvvD~l~~~--Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEAPLVA-----------------GVVDALRAA--GIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcHHHhh-----------------hhHHHHHHC--CCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 45699999999999999999988752 233455555 99999998765554 57888888888
Q ss_pred hccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------------
Q 019319 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------- 191 (343)
Q Consensus 125 ~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l------------- 191 (343)
+. +||++.+-+++ +.+.+...+. ..+.|+|+| ++|-+.+-+|.|+.+.++..+.
T Consensus 113 k~-------~IPta~y~~f~-~~e~a~ayi~--~~g~piVVK---adGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~ 179 (428)
T COG0151 113 KY-------GIPTAEYEVFT-DPEEAKAYID--EKGAPIVVK---ADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSA 179 (428)
T ss_pred Hc-------CCCcccccccC-CHHHHHHHHH--HcCCCEEEe---cccccCCCCeEEcCCHHHHHHHHHHHHhhccccCC
Confidence 65 89999999886 4444544443 478999999 5666678899999998664431
Q ss_pred CCCeEEEecccCCCcEEEE--EEECCEEEEEEEecCCCCccccCcc-CCceeeecccccccccCCCCCCCccccCCCChH
Q 019319 192 EPPLVLQEFVNHGGVLFKV--YIVGEAIKVVRRFSLPDVTKQDLST-SAGVFRFPRVSCAAASADDADLDPCVAELPPRP 268 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv--~VIG~~v~~~~R~slp~~~~~~~~~-~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~ 268 (343)
...+|++||+ .|..+.+ +|=|+.+. .+|-.. +-+. .+|.-- +|..-.|+.+...-+.++..+.-.++
T Consensus 180 g~~VVIEEfL--~GeE~S~~a~~DG~~v~-----p~p~aQ--DhKra~dgD~G-PNTGGMGaysp~P~~t~e~~~~~~~~ 249 (428)
T COG0151 180 GARVVIEEFL--DGEEFSLQAFVDGKTVI-----PMPTAQ--DHKRAYDGDTG-PNTGGMGAYSPAPFITDEVVERAVEE 249 (428)
T ss_pred CCcEEEEecc--cceEEEEEEEEcCCeEE-----ECcccc--ccccccCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 1459999999 5777755 55566655 222111 1110 001000 11111112121111111110000012
Q ss_pred HHHHHHHHHHHHhCCcEeEE---EEEEeCCCCCeEEEEEecCCCC
Q 019319 269 LLERLAKELRRQLGLRLFNL---DIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 269 ~~~~lA~~l~~~lGl~l~Gv---Dvi~~~~~g~~~~ViDVN~fPg 310 (343)
.++..+..+++. |..+-|| =++++. +| ++|||.|.=.|
T Consensus 250 Iv~ptv~gm~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFG 290 (428)
T COG0151 250 IVEPTVEGMAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFG 290 (428)
T ss_pred HHHHHHHHHHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccC
Confidence 344556667776 7777773 345543 45 79999998777
No 90
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.23 E-value=9.2e-06 Score=73.34 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=58.4
Q ss_pred CHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcE-EEecCCCCCCCCceeeEEEeChhhHhc---
Q 019319 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPL-VAKPLVADGSAKSHELSLAYDQYSLKK--- 190 (343)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~-VvKp~~a~GS~~sh~m~iv~~~~~L~~--- 190 (343)
+|..+-+.++++ +|||+++.++. +.+++.+.+.. ..+|+ |+| ++|.+.+.+|.|+.+.++..+
T Consensus 2 SK~faK~fm~~~-------~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViK---adGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRY-------GIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIK---ADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHT-------T-SB--EEEES-SHHHHHHHHHH--HSSSEEEEE---ESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-------CCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEc---cCCCCCCCEEEEeCCHHHHHHHHH
Confidence 466666777765 89999999995 44444554444 57788 999 567777899999999865332
Q ss_pred -c---------CCCeEEEecccCCCcEEEEEE--ECCEEE
Q 019319 191 -L---------EPPLVLQEFVNHGGVLFKVYI--VGEAIK 218 (343)
Q Consensus 191 -l---------~~p~v~QEFI~h~g~~~Kv~V--IG~~v~ 218 (343)
+ ..++|+|||+ .|..+.+++ =|+++.
T Consensus 69 ~~~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 69 EIFVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEEE
T ss_pred HhccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeEE
Confidence 1 3579999999 699887654 466644
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.15 E-value=4.9e-05 Score=78.56 Aligned_cols=226 Identities=15% Similarity=0.256 Sum_probs=137.4
Q ss_pred CceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeCh
Q 019319 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDP 106 (343)
Q Consensus 27 ~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp 106 (343)
.+.|.||--++|-- .-+..+.+++.|.+++++++.=--.. |++ .. .+.+.. ...|+..|-|
T Consensus 77 DEaY~iGk~l~PV~-AYL~ideii~iak~~~vdavHPGYGF-LSE-----------rs-dFA~av-----~~AGi~fiGP 137 (1176)
T KOG0369|consen 77 DEAYLIGKGLPPVG-AYLAIDEIISIAKKHNVDAVHPGYGF-LSE-----------RS-DFAQAV-----QDAGIRFIGP 137 (1176)
T ss_pred ccceecccCCCchh-hhhhHHHHHHHHHHcCCCeecCCccc-ccc-----------ch-HHHHHH-----HhcCceEeCC
Confidence 45677776666532 33566789999999998875321111 111 01 121222 2258888876
Q ss_pred -hhHHHHhcCHHHHHHHHHhccccCCCCCccC-Cc---EEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 107 -PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PR---QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 107 -~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~-P~---~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
|+-|+.+.||...-++-.+. ++|+ |- -+.. .+++.+. ....+||+|.|... |. ++++|-+
T Consensus 138 speVi~~mGDKv~AR~~Ai~a-------gVpvVPGTpgPitt---~~EA~eF--~k~yG~PvI~KAAy--GG-GGRGmRv 202 (1176)
T KOG0369|consen 138 SPEVIDSMGDKVAARAIAIEA-------GVPVVPGTPGPITT---VEEALEF--VKEYGLPVIIKAAY--GG-GGRGMRV 202 (1176)
T ss_pred CHHHHHHhhhHHHHHHHHHHc-------CCCccCCCCCCccc---HHHHHHH--HHhcCCcEEEeecc--cC-CCcceEE
Confidence 67888999998755554443 4432 21 1111 1112222 24579999999544 44 6899999
Q ss_pred EeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCccccCccCCceeeec
Q 019319 182 AYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAGVFRFP 243 (343)
Q Consensus 182 v~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~----v~~~~R~-slp~~~~~~~~~~~g~~~~~ 243 (343)
|..-+++++. +..+.++.|++. .+-+-|-.+||+ |+.+.|- |.. .. |
T Consensus 203 Vr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQ--------RR------H 267 (1176)
T KOG0369|consen 203 VRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQ--------RR------H 267 (1176)
T ss_pred eechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchh--------hh------h
Confidence 9998777642 567999999985 556788888886 3344443 211 00 1
Q ss_pred ccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 019319 244 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 244 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (343)
+.- -..+.-..++|.+ .+.+..-|.++++..|-.-+| +.+++|. .| ++|+||||.==.
T Consensus 268 QKV--VEiAPA~~Lp~~v-----R~~~~~davklAk~vgY~NAGTvEFLvD~-~g-~hYFIEvN~RlQ 326 (1176)
T KOG0369|consen 268 QKV--VEIAPAKTLPPEV-----RDAILTDAVKLAKHVGYENAGTVEFLVDQ-KG-RHYFIEVNPRLQ 326 (1176)
T ss_pred cce--eEecccccCCHHH-----HHHHHHHHHHHHHHhCcccCCceEEEEcc-CC-CEEEEEecCcee
Confidence 100 0001112222222 345677899999999999999 9999996 45 689999996443
No 92
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.46 E-value=0.011 Score=55.11 Aligned_cols=179 Identities=16% Similarity=0.255 Sum_probs=101.7
Q ss_pred ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~ 184 (343)
|.-.-...|.||+..-+-+++.. +....|+..-+..+.++ +....|.-++|+||..++|+ ..++.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~----i~~~~Lp~~fViK~nhgsg~-----~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDD----IDFDSLPDKFVIKPNHGSGS-----NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhh----hhhhcCCCCEEEEEecCCCc-----EEEEeC
Confidence 34445667889998888887642 13345555544323222 23455778999999886553 344444
Q ss_pred hh-----h----Hhc-----------------cCCCeEEEecccCC-C---cEEEEEEECCEEEEEEEecCCCCccccCc
Q 019319 185 QY-----S----LKK-----------------LEPPLVLQEFVNHG-G---VLFKVYIVGEAIKVVRRFSLPDVTKQDLS 234 (343)
Q Consensus 185 ~~-----~----L~~-----------------l~~p~v~QEFI~h~-g---~~~Kv~VIG~~v~~~~R~slp~~~~~~~~ 234 (343)
.. . +.. +.+-+++++|+... | .|||+||.++++....--+-.. . +.
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~-~-~~-- 151 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF-G-NH-- 151 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC-C-Ce--
Confidence 31 1 111 13458999999975 4 6999999999765443222110 0 00
Q ss_pred cCCceee--ecccccccccCCCCCCCccccCCC-ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 235 TSAGVFR--FPRVSCAAASADDADLDPCVAELP-PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 235 ~~~g~~~--~~~~s~~~~~~~~~~~~~~~~~~p-~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
....|+ +....-.+ ..+ ..+. .+.| .-++|.++|.+|++- ..+.-||+-..+ | ++|+=|+=.+||=
T Consensus 152 -~~~~yd~dw~~l~~~~--~~~--~~~~-~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFGElTf~p~~ 220 (239)
T PF14305_consen 152 -KRNFYDRDWNRLPFRS--DYP--PDED-IPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFGELTFTPGA 220 (239)
T ss_pred -EEEEECcccCCCcccc--CCC--CCCC-CCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEEeeecCCCC
Confidence 011121 11111000 000 0011 1222 235678889888886 557789999764 3 6999999999995
Q ss_pred c
Q 019319 312 V 312 (343)
Q Consensus 312 ~ 312 (343)
.
T Consensus 221 G 221 (239)
T PF14305_consen 221 G 221 (239)
T ss_pred c
Confidence 5
No 93
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.38 E-value=0.00087 Score=71.85 Aligned_cols=195 Identities=23% Similarity=0.360 Sum_probs=122.0
Q ss_pred Cceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCC-CCCCCce
Q 019319 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSH 177 (343)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~GS~~sh 177 (343)
++.|+ -+|+.|...-||+...+.|.++ +|..|.+-.+++ -+++.. -...++||+++.|.-- .|+
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~-~~eA~~--F~~~VgYP~lvRPSYVLSGa---- 1082 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTS-LEEAKK--FAEKVGYPVLVRPSYVLSGA---- 1082 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhcc-HHHHHH--HHHhcCCceEecccceecch----
Confidence 33443 4788999999999999999987 788898887752 122221 2356999999999543 244
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCccccCccCCceeeecccc
Q 019319 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (343)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~--~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s 246 (343)
.|.+++++++|+.. +.|+|+-.||+ +++.+-|=.|+. ++. ++-.|- .++ +.|.. +.
T Consensus 1083 AMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~-~haiSE-HvE------nAGVH---SG- 1149 (1435)
T KOG0370|consen 1083 AMNVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVL-VHAISE-HVE------NAGVH---SG- 1149 (1435)
T ss_pred hhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEE-EEehhh-hhh------ccccc---CC-
Confidence 69999999998863 67999999998 566665544432 222 111221 111 11110 00
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEec-----CCCCCccCCcchHH
Q 019319 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDIN-----YFPGEVWENAGVRA 320 (343)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN-----~fPg~~~gv~~~~~ 320 (343)
.+.-...+.++.+.. .+.+++++.+++++|..+ =|++-+|..+ |.+.|||-| .||-.. +.-++
T Consensus 1150 DAtlv~Ppq~l~~~t-----~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvS-Ktlgv-- 1218 (1435)
T KOG0370|consen 1150 DATLVLPPQDLSADT-----LERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVS-KTLGV-- 1218 (1435)
T ss_pred ceeEeCCchhcCHHH-----HHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeecccccee-hhcCc--
Confidence 000000112221111 256899999999999986 4678888643 579999999 588877 66654
Q ss_pred HHHhHHhhhccc
Q 019319 321 HIYRLPIKPDTE 332 (343)
Q Consensus 321 ~l~~~l~~~i~~ 332 (343)
.+.+.-.+.+..
T Consensus 1219 dfi~~At~~i~g 1230 (1435)
T KOG0370|consen 1219 DFIALATRAIMG 1230 (1435)
T ss_pred hHHHHHHHHHhC
Confidence 344444444443
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.05 E-value=0.0016 Score=64.88 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=61.6
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCC-CcEEEecCCC-CCCCCceeeEEEeChhhHhcc---
Q 019319 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL--- 191 (343)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~GS~~sh~m~iv~~~~~L~~l--- 191 (343)
+..-++|++. +||+|++.++. +.+++.+. ...++ ||+|+||..- .|...+.++.++.+++++.+.
T Consensus 6 ~~aK~ll~~~-------GIpvp~~~~~~-~~~ea~~~--~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~ 75 (386)
T TIGR01016 6 YQAKQIFAKY-------GIPVPRGYVAT-SVEEAEEI--AAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEK 75 (386)
T ss_pred HHHHHHHHHc-------CCCCCCceeeC-CHHHHHHH--HHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHH
Confidence 3445667754 99999999885 33333322 23578 9999999732 133345689999998776542
Q ss_pred --C---------------CCeEEEecccCCCcEEEEEEECCE
Q 019319 192 --E---------------PPLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 192 --~---------------~p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
. ..+++|+|+++ |+.+-|.+++|+
T Consensus 76 l~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~ 116 (386)
T TIGR01016 76 LLGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDR 116 (386)
T ss_pred HhccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcC
Confidence 1 14899999964 899999998886
No 95
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.02 E-value=0.0056 Score=61.96 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=94.9
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCc-C-------CCccEEEEccCchhH-------HHHHHHHHHhCCCceeeChh
Q 019319 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD-Q-------GPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~-q-------~~fDvilhK~t~~~~-------~~~l~~~~~~~p~v~ViDp~ 107 (343)
.-....|.+..+++|++++..|+++ |.- . .+.|+|.=|+.+.+. ...++.|... .+++++|+
T Consensus 199 ~~Ef~~f~~~f~~~G~~~vI~d~~~-L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~--av~~vgsf 275 (445)
T PF14403_consen 199 LSEFEVFQRLFEEHGYDCVICDPRD-LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDG--AVCMVGSF 275 (445)
T ss_pred cchHHHHHHHHHHcCCceEecChHH-ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcC--CeEEecch
Confidence 3344568999999999999999987 442 2 288999988877432 2345566554 78999998
Q ss_pred hHHHHhcCHHHHHHHHHhcc---ccCCC-CCc--cCCcEEEEec-------CCCCch-HHHHhcCCCCcEEEecCCCCCC
Q 019319 108 YAIQHLHNRQSMLQCVADMN---LSNSY-GKV--DVPRQLVIER-------DASSIP-DVVLKAGLTLPLVAKPLVADGS 173 (343)
Q Consensus 108 ~ai~~~~dR~~~~~~L~~~~---l~~~~-~~I--~~P~~~~~~~-------~~~~~~-~~l~~~~l~fP~VvKp~~a~GS 173 (343)
+.+.++||....-+-.... +++.. .-| -+|-|..++. +..++. ..++... -+|+||..+.|
T Consensus 276 -rs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~---~lVLKP~D~Yg- 350 (445)
T PF14403_consen 276 -RSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRD---RLVLKPNDEYG- 350 (445)
T ss_pred -hhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhchh---cEEeccccccC-
Confidence 5578889975332221110 11000 011 3888988864 112222 2223333 79999988654
Q ss_pred CCceeeEE--EeChhhHhc-----cCCCeEEEecccC
Q 019319 174 AKSHELSL--AYDQYSLKK-----LEPPLVLQEFVNH 203 (343)
Q Consensus 174 ~~sh~m~i--v~~~~~L~~-----l~~p~v~QEFI~h 203 (343)
||||++ =++.+++++ ++.|+|+|||+.-
T Consensus 351 --g~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 351 --GKGVYIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred --CCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 567765 444555544 3779999999975
No 96
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.85 E-value=0.0025 Score=63.40 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=63.4
Q ss_pred CHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCC-CCcEEEecCCC-CCCCCceeeEEEeChhhHhcc-
Q 019319 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL- 191 (343)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a-~GS~~sh~m~iv~~~~~L~~l- 191 (343)
+...+.++|++. +||+|++.++. +.+++.+. ...+ +||+|+||..- .|.+.+.+|.+..+++++.+.
T Consensus 4 ~e~~ak~lL~~~-------gIpvp~~~~~~-~~~ea~~~--a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~ 73 (388)
T PRK00696 4 HEYQAKELFAKY-------GVPVPRGIVAT-TPEEAVEA--AEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFA 73 (388)
T ss_pred CHHHHHHHHHHc-------CCCCCCCeeeC-CHHHHHHH--HHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHH
Confidence 345566777764 99999999885 33333332 2347 89999999642 234467799999888776541
Q ss_pred -----C-----------C---CeEEEecccCCCcEEEEEEECCE
Q 019319 192 -----E-----------P---PLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 192 -----~-----------~---p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
. . .+++|+|+++ |..+-+.+..|.
T Consensus 74 ~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~ 116 (388)
T PRK00696 74 KQILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDR 116 (388)
T ss_pred HHhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcC
Confidence 1 1 2899999964 788888888775
No 97
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0046 Score=62.75 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=47.8
Q ss_pred cCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhccCCCeEEEecccCC------CcEEE
Q 019319 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG------GVLFK 209 (343)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~------g~~~K 209 (343)
..|++.++-.+.+++.+......-.. +||||-. |+.+-|+.++..-..+. -..|+++|+||... -+|.+
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~p-k~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFP-KDRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCC-CcccHHHHHHhhcceeecCcceeEE
Confidence 48999888434344444433322222 8899866 44666888888777665 36799999999753 45667
Q ss_pred EEEE
Q 019319 210 VYIV 213 (343)
Q Consensus 210 v~VI 213 (343)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 7665
No 98
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=95.89 E-value=0.32 Score=41.16 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=66.3
Q ss_pred cEEEecCCCCCCCCceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccC
Q 019319 162 PLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS 236 (343)
Q Consensus 162 P~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~ 236 (343)
|+-+||..-. ..-.=.++...+.|... +.++++.|.++ =..+||+||+.++++...+..- +
T Consensus 3 ~~FiKP~~~~---K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~------~---- 68 (130)
T PF14243_consen 3 PVFIKPPDDD---KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG------D---- 68 (130)
T ss_pred CeEeCCCCCC---CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC------C----
Confidence 7888987622 22212233334555432 66899999997 4789999999999987755421 0
Q ss_pred CceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHH-HhCCcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 237 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR-QLGLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 237 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~-~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
..+. ++.+.+......+.+ ...-.-|.+|+=+.. +| ..+|||+|.+=+
T Consensus 69 ------------------~~~~------~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 69 ------------------WDLE------PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ------------------cccC------CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 0000 011222333222221 556778889999875 45 589999997654
No 99
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=94.86 E-value=0.26 Score=55.84 Aligned_cols=187 Identities=13% Similarity=0.209 Sum_probs=107.8
Q ss_pred CceeeChhh-HHHHhcCHHHHHHHHHhcccc---CCCCCccCCcEE------EEecC------CCCchHHH-HhcCCCCc
Q 019319 100 EVTVLDPPY-AIQHLHNRQSMLQCVADMNLS---NSYGKVDVPRQL------VIERD------ASSIPDVV-LKAGLTLP 162 (343)
Q Consensus 100 ~v~ViDp~~-ai~~~~dR~~~~~~L~~~~l~---~~~~~I~~P~~~------~~~~~------~~~~~~~l-~~~~l~fP 162 (343)
++..|-||. ++.-+.||..+.-+-+..+++ =...+|.++..- .+..+ -.+..+.+ +...+|||
T Consensus 162 ~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfP 241 (2196)
T KOG0368|consen 162 GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFP 241 (2196)
T ss_pred CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCc
Confidence 588898885 566788999877665555432 111244444332 11100 00111112 23469999
Q ss_pred EEEecCCCCCCCCceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccC
Q 019319 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDL 233 (343)
Q Consensus 163 ~VvKp~~a~GS~~sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~ 233 (343)
+.+|-..|+ ++-|+-.+.|+++++.+ +.|+.+=.-.. ++|-+-|=.++|++--+.--.-.| +.+
T Consensus 242 vMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~IsLfgRD---CSi 314 (2196)
T KOG0368|consen 242 VMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVISLFGRD---CSI 314 (2196)
T ss_pred eEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeEeeccc---chH
Confidence 999987755 46789999999998875 55776666554 456666666766632111000000 000
Q ss_pred ccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 019319 234 STSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINY 307 (343)
Q Consensus 234 ~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~ 307 (343)
... |++--- .-++.+-| ...-..|++.|+++++..|--=+| |..+-..++| +||++|.|-
T Consensus 315 QRR------hQKIIE---EAPatIap----~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLELNP 375 (2196)
T KOG0368|consen 315 QRR------HQKIIE---EAPATIAP----PETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLELNP 375 (2196)
T ss_pred HHH------HHHHHh---hCCcccCC----HHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEecCc
Confidence 000 000000 00111111 001356899999999999999999 9999987666 899999994
No 100
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=94.42 E-value=0.022 Score=52.69 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCC---CCCCceeeEE-EeChhhH
Q 019319 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD---GSAKSHELSL-AYDQYSL 188 (343)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~---GS~~sh~m~i-v~~~~~L 188 (343)
.++-....++|+.. ||++|++.++.+ .++..+ ....++||+++|-..++ =| ...++.+ +.+++++
T Consensus 9 ~L~e~e~~~lL~~y-------GI~~~~~~~~~~-~~ea~~--~a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v 77 (222)
T PF13549_consen 9 WLTEAEAKELLAAY-------GIPVPPTRLVTS-AEEAVA--AAEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEV 77 (222)
T ss_dssp EE-HHHHHHHHHTT-------T------EEESS-HHHHHH--HHHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHH
T ss_pred ccCHHHHHHHHHHc-------CcCCCCeeEeCC-HHHHHH--HHHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHH
Confidence 34455677888854 999999999953 222222 23468999999976543 12 2335666 6677666
Q ss_pred hcc-----------C-----CCeEEEecccCCCcEEEEEEECC
Q 019319 189 KKL-----------E-----PPLVLQEFVNHGGVLFKVYIVGE 215 (343)
Q Consensus 189 ~~l-----------~-----~p~v~QEFI~h~g~~~Kv~VIG~ 215 (343)
++. . ..+++|+.++++|..+-|.+.-|
T Consensus 78 ~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~D 120 (222)
T PF13549_consen 78 REAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRD 120 (222)
T ss_dssp HHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEEC
Confidence 541 1 24899999987788887766655
No 101
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=92.28 E-value=0.63 Score=44.94 Aligned_cols=90 Identities=19% Similarity=0.449 Sum_probs=61.4
Q ss_pred CeEEEeccc-CCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHH
Q 019319 194 PLVLQEFVN-HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 272 (343)
Q Consensus 194 p~v~QEFI~-h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~ 272 (343)
-+++.+|++ +.+..|||||-+++++++-.+.. +. |.| . ......+ ...+.+
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~-----------~~~--L---------~~~~~~I-----~~~I~~ 202 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NY-----------YDF--L---------EELKEEI-----RSKIQE 202 (299)
T ss_pred EEEEeccccCCccceEEEEEECCEEEEEecccc-cc-----------cHH--H---------HHHHHHH-----HHHHHH
Confidence 478899998 46999999999999987744332 21 110 0 0000001 233444
Q ss_pred HH-HHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 273 LA-KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 273 lA-~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.. ..+...+.+.=|-|||.++... ++.++||+|.|-+-+
T Consensus 203 F~~~~I~~~~~~~~~v~DVyi~~~~-~~v~LID~NPf~~~T 242 (299)
T PF07065_consen 203 FFEEHIKPKFPLDNYVFDVYITRDK-DKVWLIDFNPFGPRT 242 (299)
T ss_pred HHHHHHHhhCCCCCEEEEEEEcCCC-CeEEEEEecCCcccC
Confidence 44 5678889999999999998753 389999999998855
No 102
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.15 Score=52.40 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc------------CCCeEEEecccCC----Cc--EEEEEEECCE
Q 019319 158 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVLQEFVNHG----GV--LFKVYIVGEA 216 (343)
Q Consensus 158 ~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l------------~~p~v~QEFI~h~----g~--~~Kv~VIG~~ 216 (343)
+-..++|+||.. .+.+.|+.++.+.+.+.+. +..+++|-||+++ |. |+|.||+=.+
T Consensus 197 ~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 457899999744 5588999999988886654 4568999999985 44 5588887654
No 103
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=91.92 E-value=2.8 Score=43.88 Aligned_cols=138 Identities=15% Similarity=0.246 Sum_probs=92.7
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhH-HHHhcCHHHHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYA-IQHLHNRQSMLQCVA 124 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~a-i~~~~dR~~~~~~L~ 124 (343)
..++.+.|.+++|.+|.+-|+.||.. =+. .+ +.. -|+++.-|..- .+.=.+|..+-..+.
T Consensus 57 ~~ala~f~~e~~I~lVvvGPE~PL~~---------Gl~-----~~---l~~--~gi~~FGPs~~aAqlE~sK~fsK~fm~ 117 (788)
T KOG0237|consen 57 FEALASFCKEHNINLVVVGPELPLVA---------GLA-----DV---LRS--AGIPCFGPSKQAAQLEASKNFSKDFMH 117 (788)
T ss_pred HHHHHHHHHHcceeEEEECCchhhhh---------hhh-----hh---hhc--cCcceeCchHHHHHhhhhHHHHHHHHH
Confidence 34588899999999999999998753 111 12 222 36788887653 333345666666666
Q ss_pred hccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhh-Hhcc------------
Q 019319 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS-LKKL------------ 191 (343)
Q Consensus 125 ~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~-L~~l------------ 191 (343)
++ +|||-++..+. +++.+...+. ..--+++|+| |+|-+-+.++.+..+.++ ++++
T Consensus 118 r~-------~IPTA~y~~ft-~~e~a~sfi~-~~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~A 185 (788)
T KOG0237|consen 118 RH-------NIPTAKYKTFT-DPEEAKSFIQ-SATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSA 185 (788)
T ss_pred hc-------CCCcceeeeeC-CHHHHHHHHH-hCCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccc
Confidence 54 89999998885 4443433333 2223789999 889888999999888754 3321
Q ss_pred CCCeEEEecccCCCcEEEEEEECCE
Q 019319 192 EPPLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
..-+|++||.+ |-...++..=|-
T Consensus 186 G~tvViEE~LE--GeEvS~laftDG 208 (788)
T KOG0237|consen 186 GKTVVIEELLE--GEEVSFLAFTDG 208 (788)
T ss_pred cceEehhhhcC--cceEEEEEEecC
Confidence 44689999995 766666555443
No 104
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=89.63 E-value=0.92 Score=41.31 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=43.7
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCC-cEEEecCCC-CCCCCceeeEEEeChhhHhcc-----C
Q 019319 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVA-DGSAKSHELSLAYDQYSLKKL-----E 192 (343)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a-~GS~~sh~m~iv~~~~~L~~l-----~ 192 (343)
-++|++ ++|++|++.++.+ .+++.+... .++. ++|+|+.+- +|--.+-++-++.+.++..+. +
T Consensus 8 K~ll~~-------~gi~vp~g~~a~s-~eea~~~~~--~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg 77 (202)
T PF08442_consen 8 KELLRK-------YGIPVPRGVVATS-PEEAREAAK--ELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLG 77 (202)
T ss_dssp HHHHHC-------TT----SEEEESS-HHHHHHHHH--HHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTT
T ss_pred HHHHHH-------cCCCCCCeeecCC-HHHHHHHHH--HhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhC
Confidence 456664 3999999999953 333333222 2444 689999553 444556778899998776542 1
Q ss_pred ---------------CCeEEEecccCCCcEE
Q 019319 193 ---------------PPLVLQEFVNHGGVLF 208 (343)
Q Consensus 193 ---------------~p~v~QEFI~h~g~~~ 208 (343)
.-++++|+++|..-.|
T Consensus 78 ~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Y 108 (202)
T PF08442_consen 78 KTLKTKQTGPKGEKVNKVLVEEFVDIKREYY 108 (202)
T ss_dssp SEEE-TTSTTTEEEE--EEEEE---CCEEEE
T ss_pred CceEeeecCCCCCEeeEEEEEecCccCceEE
Confidence 1278999998865444
No 105
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=88.83 E-value=1.3 Score=44.37 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=56.7
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCc-EEEecCC-CCCCCCceeeEEEeChhhHhcc-----
Q 019319 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLV-ADGSAKSHELSLAYDQYSLKKL----- 191 (343)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~-a~GS~~sh~m~iv~~~~~L~~l----- 191 (343)
..++|++. +||+|++.++. +.++..+ ....++|| +|+|..+ ..|-..+.++.+..+.+++.+.
T Consensus 8 ak~lL~~y-------GIpvp~~~~~~-~~~ea~~--~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll 77 (392)
T PRK14046 8 AKELLASF-------GVAVPRGALAY-SPEQAVY--RARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLL 77 (392)
T ss_pred HHHHHHHc-------CCCCCCceEEC-CHHHHHH--HHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHh
Confidence 34666654 99999999985 3333333 23458995 5999744 3345567888888888776542
Q ss_pred C----------C-----CeEEEecccCCCcEEEEEEECCE
Q 019319 192 E----------P-----PLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 192 ~----------~-----p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
+ . -+++|+++++ ++.|-+.+.-|.
T Consensus 78 ~~~~~~~~~~~~g~~v~~vlVe~~~~~-~~E~ylgi~~D~ 116 (392)
T PRK14046 78 GKKLVTHQTGPEGKPVQRVYVETADPI-ERELYLGFVLDR 116 (392)
T ss_pred cchhhhhccCCCCCeeeeEEEEEecCC-CcEEEEEEEECC
Confidence 1 1 2799999985 566655555443
No 106
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.56 E-value=2 Score=35.84 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=42.1
Q ss_pred EEEEEecc--c-ccccccchHHHhhhhhcceEEEEeeCCCCCCc------------------------------CCCccE
Q 019319 31 VVGYALTS--K-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (343)
Q Consensus 31 ~VGy~l~~--k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~------------------------------q~~fDv 77 (343)
.||+.+-| + |..+-..-.|..+|.++|+++....+++-.-+ ...||+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~~~Dv 81 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLDDFDV 81 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGGGSSE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccccCCE
Confidence 35555554 1 22333333478888899988877666541110 138999
Q ss_pred EEEccCch---hH--HHHHHHHHHhCCCceeeChhhHHH
Q 019319 78 VLHKLTGK---EW--RQILEEYRQTHPEVTVLDPPYAIQ 111 (343)
Q Consensus 78 ilhK~t~~---~~--~~~l~~~~~~~p~v~ViDp~~ai~ 111 (343)
|+.|---. .+ .-++-+.+ ++.|+.|||.|++++
T Consensus 82 vlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 82 VLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp EEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 99986432 22 12333333 346999999999986
No 107
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=81.10 E-value=2.4 Score=41.18 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc---
Q 019319 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL--- 191 (343)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l--- 191 (343)
||..-+.+|.+. +|++|+-. +++++ +.-|+|||...|- ++++-.++.+.+++.+.
T Consensus 124 ~~~~~~~lLekA-------gi~~P~~~---~~Pee---------Idr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e~ 181 (361)
T COG1759 124 DRKLEYKLLEKA-------GLRIPKKY---KSPEE---------IDRPVIVKLPGAK---GGRGYFIASSPEEFYEKAER 181 (361)
T ss_pred chhhHHHHHHHc-------CCCCCccc---CChHH---------cCCceEEecCCcc---CCceEEEEcCHHHHHHHHHH
Confidence 555667777765 89999754 22222 3449999976654 58999999999887652
Q ss_pred --C---------CCeEEEeccc
Q 019319 192 --E---------PPLVLQEFVN 202 (343)
Q Consensus 192 --~---------~p~v~QEFI~ 202 (343)
+ ....+||||-
T Consensus 182 l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 182 LLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHcCCcchhhhhhceeeEEee
Confidence 1 1367888874
No 108
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=80.89 E-value=6.4 Score=39.21 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=53.9
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCC-CcEEEecCCC-CCCCCceeeEEEeChhhHhcc-----C
Q 019319 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL-----E 192 (343)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~GS~~sh~m~iv~~~~~L~~l-----~ 192 (343)
-++|++. |||+|+..+..+ .++..+. ...++ .|+|+|+.+- +|--.+-++-++.+.++..+. .
T Consensus 9 Kelf~~~-------GiPvp~g~v~~s-~eea~~~--a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg 78 (387)
T COG0045 9 KELFAKY-------GIPVPPGYVATS-PEEAEEA--AKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILG 78 (387)
T ss_pred HHHHHHc-------CCCCCCceeeeC-HHHHHHH--HHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhC
Confidence 4566654 999999998853 3233321 23354 7999999553 344456689999999776542 2
Q ss_pred ----C--------CeEEEecccCCCcEEEEEE
Q 019319 193 ----P--------PLVLQEFVNHGGVLFKVYI 212 (343)
Q Consensus 193 ----~--------p~v~QEFI~h~g~~~Kv~V 212 (343)
. -++++|+++|....|=+-+
T Consensus 79 ~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsi 110 (387)
T COG0045 79 KNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSI 110 (387)
T ss_pred cccccCcCCceeeEEEEEecCCCccceEEEEE
Confidence 1 2799999997664553333
No 109
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.78 E-value=2.3 Score=43.16 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=36.0
Q ss_pred CCCcEEEecCCCCCCCCceeeEEEeChhhHhccCCCeEEEecccCC-------CcEEEEEEECCE
Q 019319 159 LTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG-------GVLFKVYIVGEA 216 (343)
Q Consensus 159 l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~-------g~~~Kv~VIG~~ 216 (343)
..-|+||||..++ .+.+++++.+......+.. .++||||-.+ -.|+|||++=-.
T Consensus 225 ~KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~likS 285 (565)
T KOG2158|consen 225 MKRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSLIKS 285 (565)
T ss_pred hcccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeeeeec
Confidence 3449999987743 5668999866654443332 6788888432 567888887543
No 110
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=65.79 E-value=22 Score=35.76 Aligned_cols=165 Identities=22% Similarity=0.291 Sum_probs=89.9
Q ss_pred cchHHHhhhhhcceEEEEeeCCCC-CCcCC---------CccEEEEccCchhHHHHHHHHH--HhCCCceeeChhhHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRP-LSDQG---------PFDIVLHKLTGKEWRQILEEYR--QTHPEVTVLDPPYAIQH 112 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~-l~~q~---------~fDvilhK~t~~~~~~~l~~~~--~~~p~v~ViDp~~ai~~ 112 (343)
...=|.+.|++.|++...+++.+- +.+.| ++|+++ |+..=+|... ++|. -.+.++.+|||+-++-
T Consensus 192 T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lf-KlyPwE~~~~-e~~~~~l~~~~~~~ieP~wk~l- 268 (397)
T PHA02117 192 TIAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCF-KLYPWEWMME-DEFSAEILVSQTRFIEPAWKMM- 268 (397)
T ss_pred HHHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeee-ecccHHHHhh-CcchhhhhhCCcEEechhHHhH-
Confidence 333367788888887776665541 11223 333443 5554233211 1221 1135799999997654
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCC-CcEEEecCCCCCCCCceeeEEEeChhhHhc-
Q 019319 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSHELSLAYDQYSLKK- 190 (343)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~- 190 (343)
+.||.. +-+|.++. + .++--.|.+..- +. ...+ ...++ -..|.||+.+ - ++.+|.|+.+...+.+
T Consensus 269 lsnKal-LalLW~l~--p-~hp~LLpay~~~--d~-~~~~---~~~~~~~~yV~KPi~g--R-EG~nV~i~~~g~~~~~~ 335 (397)
T PHA02117 269 LSNKGL-LALLYERY--P-DCPWLVPAYVED--DF-DREN---LFTLENPKYVSKPLLS--R-EGNNIHIFEYGGESEDT 335 (397)
T ss_pred hccHHH-HHHHHHhc--C-CCcccccccccc--cc-cccc---hhccccCCEEeccCCC--c-CCCCEEEEECCeEEecc
Confidence 458765 44455431 1 123233332210 10 0000 00011 1499999994 3 6778999866433322
Q ss_pred ---c-CCCeEEEecccC---CCc--EEEEEEECCEEEEE-EEecC
Q 019319 191 ---L-EPPLVLQEFVNH---GGV--LFKVYIVGEAIKVV-RRFSL 225 (343)
Q Consensus 191 ---l-~~p~v~QEFI~h---~g~--~~Kv~VIG~~v~~~-~R~sl 225 (343)
+ +.++|.|+|++= +|. .+=+++|||+.... .|.+.
T Consensus 336 ~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 336 DGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred CCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 2 568999999984 233 56889999987644 77653
No 111
>PLN02235 ATP citrate (pro-S)-lyase
Probab=62.79 E-value=23 Score=35.95 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCccCCcEEEEecCCCCchHHHHh-cCCCC-cEEEecCCCC-CCCCceeeEEEeChhhHhcc-----CC-----------
Q 019319 133 GKVDVPRQLVIERDASSIPDVVLK-AGLTL-PLVAKPLVAD-GSAKSHELSLAYDQYSLKKL-----EP----------- 193 (343)
Q Consensus 133 ~~I~~P~~~~~~~~~~~~~~~l~~-~~l~f-P~VvKp~~a~-GS~~sh~m~iv~~~~~L~~l-----~~----------- 193 (343)
.+||+|+..++-...++..+.... ..|+. ++|+|+.+-. |--.+-++-++.+.++..+. +.
T Consensus 23 ~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v 102 (423)
T PLN02235 23 AGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPI 102 (423)
T ss_pred CCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccE
Confidence 499999999882233223222111 12665 4699996643 44456778899999887653 21
Q ss_pred -CeEEEecccCC
Q 019319 194 -PLVLQEFVNHG 204 (343)
Q Consensus 194 -p~v~QEFI~h~ 204 (343)
-++++|+++|.
T Consensus 103 ~~vLVEe~v~i~ 114 (423)
T PLN02235 103 TTFIVEPFVPHD 114 (423)
T ss_pred eEEEEEecCCCc
Confidence 25778888775
No 112
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=59.81 E-value=3.6 Score=45.29 Aligned_cols=229 Identities=16% Similarity=0.247 Sum_probs=120.3
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc--CCCcc----------------------EEEEccCchh--------H-HHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSD--QGPFD----------------------IVLHKLTGKE--------W-RQI 90 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~--q~~fD----------------------vilhK~t~~~--------~-~~~ 90 (343)
++--.-+++.++.|+..+.|+++-...+ +|--| .|+.-..+.. + ...
T Consensus 398 YSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gv 477 (1435)
T KOG0370|consen 398 YSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGV 477 (1435)
T ss_pred eeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeeccc
Confidence 3333477888999999999999853332 33333 3332222210 0 112
Q ss_pred HHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHH-HhcCCCCcEEEecC
Q 019319 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV-LKAGLTLPLVAKPL 168 (343)
Q Consensus 91 l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l-~~~~l~fP~VvKp~ 168 (343)
+.+ +++.|+ -|.+.+...-||-.-.+.|.+. +.++-++...+ .+.+.+ +...++||+|+...
T Consensus 478 f~~-----~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~----sie~al~aae~l~ypvivRaa 541 (1435)
T KOG0370|consen 478 FAQ-----YGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAVS----TIEEALEAAERLGYPVIVRAA 541 (1435)
T ss_pred ccc-----cchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhHh----HHHHHHHHHHhcCcHHHHHHH
Confidence 222 344444 3567778888888878888765 23332222221 122222 34679999999975
Q ss_pred CCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEE-EEEEecCCCCccccCccCCcee
Q 019319 169 VADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 169 ~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~-~~~R~slp~~~~~~~~~~~g~~ 240 (343)
.+=| +-+=..+.|+++|.++ .+.++++.=+. +=..+-+=|+.|.+- |..-..+-|+++-++.+.+...
T Consensus 542 yalg---glgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiV 617 (1435)
T KOG0370|consen 542 YALG---GLGSGFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIV 617 (1435)
T ss_pred HHhc---CccccccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCcccCcceeeccceEE
Confidence 5432 2234467899999875 33455555552 223445556666533 2222234444443333322221
Q ss_pred eecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCC
Q 019319 241 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYF 308 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~f 308 (343)
--++ ..++.+ ....++..|.++-+.||.- =+++-...+..+ -.|+|||||+-
T Consensus 618 vaps----------qtlsd~-----ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNar 670 (1435)
T KOG0370|consen 618 VAPS----------QTLSDE-----EYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNAR 670 (1435)
T ss_pred Eeec----------cccChH-----HHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeE
Confidence 1010 011000 0234677788888888753 223555555433 37999999964
No 113
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=57.42 E-value=10 Score=38.52 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCC---CCcEEEecCCC-CCCCCc-------eeeEEEeChh
Q 019319 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL---TLPLVAKPLVA-DGSAKS-------HELSLAYDQY 186 (343)
Q Consensus 118 ~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l---~fP~VvKp~~a-~GS~~s-------h~m~iv~~~~ 186 (343)
...++|++. +||+|+..++. +.+++.+. ...+ ++|+|+|...- +|--.+ -++.+..+ +
T Consensus 34 qaK~LL~~~-------GIpvp~~~va~-t~eea~~a--a~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-e 102 (422)
T PLN00124 34 QGAELMSKY-------GVNVPKGAAAS-SLDEVKKA--LEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-D 102 (422)
T ss_pred HHHHHHHHc-------CCCCCCceeeC-CHHHHHHH--HHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-H
Confidence 455677754 99999999885 33333221 2335 68999999753 333222 34556655 5
Q ss_pred hHhc
Q 019319 187 SLKK 190 (343)
Q Consensus 187 ~L~~ 190 (343)
++.+
T Consensus 103 ea~~ 106 (422)
T PLN00124 103 KAEE 106 (422)
T ss_pred HHHH
Confidence 5543
No 114
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=52.39 E-value=7.7 Score=38.35 Aligned_cols=104 Identities=21% Similarity=0.216 Sum_probs=62.3
Q ss_pred hCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCc
Q 019319 97 THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (343)
Q Consensus 97 ~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~s 176 (343)
+.+++.+|+|+=.+ ++.||.. +-+|.+.- ++++--.|.+.... .. . ..+---|.||+.+ - ++
T Consensus 248 ~~~~~~~lEPaWk~-ilsNK~l-LplLW~~f---PnHp~LL~t~F~~~--~~--~------~~~~~yv~KPl~g--R-EG 309 (387)
T COG0754 248 ENARTIFLEPAWKS-ILSNKAL-LPLLWERF---PNHPNLLPTYFEPD--DE--E------KLGESYVRKPLFG--R-EG 309 (387)
T ss_pred cCCCcEEechhHHH-HhccccH-HHHHHHhC---CCCcccccccCCCC--cc--c------cchhhhhcccccc--c-cC
Confidence 55899999998554 4557765 44555431 12233344333221 11 1 1111269999984 2 56
Q ss_pred eeeEEEeCh-hhHhcc-----CCCeEEEecccCCCcEEEEEEECCEEE
Q 019319 177 HELSLAYDQ-YSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (343)
Q Consensus 177 h~m~iv~~~-~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~~v~ 218 (343)
-++.|+.+. +.+.+. +.++|+|||.+-+...-+.|+||.-++
T Consensus 310 aNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v 357 (387)
T COG0754 310 ANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVV 357 (387)
T ss_pred CCeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEE
Confidence 689999874 445444 557899999997766666777765544
No 115
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=50.26 E-value=17 Score=35.68 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=19.0
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 282 GLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 282 Gl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
-+.++|+|++++. +| +++|||.|.--+
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCCCC
Confidence 4899999999986 46 799999997543
No 116
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=49.12 E-value=1.1e+02 Score=30.01 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCCeEEEecccCCCcEEEEEEECC-EEEEEEEecC
Q 019319 192 EPPLVLQEFVNHGGVLFKVYIVGE-AIKVVRRFSL 225 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv~VIG~-~v~~~~R~sl 225 (343)
....++||=| .|.=|.++|-++ ++.++.|...
T Consensus 24 ~~ewvatEKl--hGaNfsi~~~~~~~i~~akR~~~ 56 (325)
T TIGR02307 24 LTEWVAREKI--HGTNFSIIIERDFKVTCAKRTGI 56 (325)
T ss_pred CceEEEEEEe--cCcceEEEEeCCceEEEeecccc
Confidence 4489999999 699999999988 8888888743
No 117
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=47.73 E-value=43 Score=28.58 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred cCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHH
Q 019319 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILE 92 (343)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~ 92 (343)
..-+..+|+..+.+.=.+-. -+|..++.+.|...+.++.+..-...| =+|+|+.|...+.. ++
T Consensus 35 ~~l~gk~v~~lF~e~StRTR--~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~---~~ 109 (142)
T PF02729_consen 35 QLLKGKTVALLFFEPSTRTR--LSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGA---LE 109 (142)
T ss_dssp TTTTTCEEEEEESS--HHHH--HHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHH---HH
T ss_pred ccCCCCEEEEEecCCCchhh--hhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchH---HH
Confidence 34456778887777322211 237789999999999999665222211 47999999776433 33
Q ss_pred HHHHhCCCceeeChh
Q 019319 93 EYRQTHPEVTVLDPP 107 (343)
Q Consensus 93 ~~~~~~p~v~ViDp~ 107 (343)
++ +++..+||||=.
T Consensus 110 ~~-a~~~~vPVINa~ 123 (142)
T PF02729_consen 110 EL-AEHSSVPVINAG 123 (142)
T ss_dssp HH-HHHCSSEEEEEE
T ss_pred HH-HHhccCCeEcCc
Confidence 33 344589999854
No 118
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=40.04 E-value=95 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=24.4
Q ss_pred EecccccccccchHHHhhhhhcceEEEEeeCCC
Q 019319 35 ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR 67 (343)
Q Consensus 35 ~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~ 67 (343)
.-.+.....+....+..++++.|+++..+|.+.
T Consensus 6 ~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 6 ACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 334445555666667788899999999999875
No 119
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=37.24 E-value=53 Score=29.53 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCcCCCccEEEE---ccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHH
Q 019319 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLH---KLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (343)
Q Consensus 48 ~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilh---K~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~ 118 (343)
.+-+++.++|+.+..|+++.+|+ .|.+|+- .+.+....+.|.+|.++ -|.+|+.+...+..-.++..
T Consensus 34 ~~y~al~~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHHHcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcCc
Confidence 36668899999999999988666 4887773 23345667889999954 78888999888877777764
No 120
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.85 E-value=39 Score=35.03 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=26.8
Q ss_pred CcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcc
Q 019319 283 LRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAG 317 (343)
Q Consensus 283 l~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~ 317 (343)
-.+||+|+++|+ .+ .+++||||++|.++..-++
T Consensus 377 FElyG~DfliD~-~l-kpwLiEiNssP~~~~t~~~ 409 (497)
T KOG2157|consen 377 FELYGFDFLIDE-AL-KPWLIEINASPDLTQTTKN 409 (497)
T ss_pred hhhhCcceeecC-CC-CeEEEEeecCCcccccchh
Confidence 368999999997 45 6899999999999944444
No 121
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=36.31 E-value=4.2 Score=39.62 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
..+.-+|.-.....+.++..+...+.+. ++..|.-.-.. .++...+.+. .-+++|+|.||+.+ | +-.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~vvfp~lhG~~-gEDg~iqg~l-e~~giPyvg~gv~~--S--a~~ 101 (317)
T COG1181 35 YDVTPVDITEAGLWMLDKEVTKRVLQKA-------DVVFPVLHGPY-GEDGTIQGLL-ELLGIPYVGKGVLA--S--AGA 101 (317)
T ss_pred ceeEEEeccccceEEeccccchhhcccC-------CEEEEeCCCCC-CCCchHHHHH-HHhCCCEecCchhh--h--hhc
Confidence 4455666666666777766655555543 33333222221 2222333332 34799999999884 4 223
Q ss_pred eEEEeCh-----hhHhcc-------C--CCeEEEecccCCCcEEEEEEECCEEEEEEEe
Q 019319 179 LSLAYDQ-----YSLKKL-------E--PPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 223 (343)
Q Consensus 179 m~iv~~~-----~~L~~l-------~--~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~ 223 (343)
|..++.. +++... . .+.++|+|+ .|-.|++||.+++...+.-+
T Consensus 102 mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 102 MDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSSVGR 158 (317)
T ss_pred ccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCccceeeE
Confidence 4443333 333332 1 345566777 58899999999997765333
No 122
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=34.37 E-value=1e+02 Score=30.30 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=48.2
Q ss_pred CceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCC-CCc-----------CCCccEEEEccCchhHHHHHHHH
Q 019319 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRP-LSD-----------QGPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 27 ~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~-l~~-----------q~~fDvilhK~t~~~~~~~l~~~ 94 (343)
-...+|+..|.+.=.+.- -+|..++.+.|..++.+|.+.. +.. .+=+|+|+.|...+. .++++
T Consensus 43 L~gk~l~~lF~epSTRTR--~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~---~~~~~ 117 (334)
T PRK12562 43 LTGKNIALIFEKDSTRTR--CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQE---VVETL 117 (334)
T ss_pred CCCCEEEEEECCCCchhH--HHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchH---HHHHH
Confidence 346678887776322211 2388899999999999987642 111 124899999987643 33333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
+++-++||||-.
T Consensus 118 -a~~~~vPVINa~ 129 (334)
T PRK12562 118 -AEYAGVPVWNGL 129 (334)
T ss_pred -HHhCCCCEEECC
Confidence 344589999943
No 123
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.27 E-value=2.5e+02 Score=22.74 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=40.2
Q ss_pred ccccccchHHHhhhhhcceEEEEeeCCC----------CCCc-CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChh
Q 019319 40 KTKSFLQPKLEGLARNKGILFVAIDQNR----------PLSD-QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 40 K~~~~~~~~l~~~a~~~Gi~~v~ID~~~----------~l~~-q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~ 107 (343)
+..++... ..+...++|+++.+++++. .+.+ .++.|+++.=...+.....+++-.+...+.+++-|-
T Consensus 11 ~~~~~g~~-v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 11 NPGKFGYR-VLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp STTSHHHH-HHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CCCChHHH-HHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 33445443 3333344999999999986 2332 368888887666656667777777777777777777
No 124
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.94 E-value=1.6e+02 Score=28.15 Aligned_cols=85 Identities=19% Similarity=0.340 Sum_probs=51.5
Q ss_pred eEEEeccc-CCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHH
Q 019319 195 LVLQEFVN-HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERL 273 (343)
Q Consensus 195 ~v~QEFI~-h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~l 273 (343)
+++-+.-+ |++-.|||||=.++.+....|-..| .|++= . . . .+.++.+
T Consensus 165 LvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tn-----------yYd~l--~---------e---~------kd~~k~l 213 (334)
T KOG2983|consen 165 LVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTN-----------YYDVL--L---------E---E------KDLLKGL 213 (334)
T ss_pred hhHhhhcCCCcCceEEEEEeccceeeeeeccchh-----------HHHHH--H---------H---H------HHHHHHH
Confidence 45544444 6799999999999988765443322 11110 0 0 0 1223333
Q ss_pred HHH-----HHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 274 AKE-----LRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 274 A~~-----l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
... +.-.+--.-|-|||-++.. + +.++||+|.|=|-+
T Consensus 214 I~eff~d~i~~kF~dedfvfDVYi~k~-~-kv~lID~Npf~~~T 255 (334)
T KOG2983|consen 214 IEEFFKDKILFKFPDEDFVFDVYITKE-R-KVWLIDFNPFCGST 255 (334)
T ss_pred HHHHHHhhhhccCCCCCeeEEEEecCC-C-cEEEEeccCccCcc
Confidence 322 3334555668899999864 3 89999999998744
No 125
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=30.67 E-value=73 Score=30.67 Aligned_cols=36 Identities=19% Similarity=0.533 Sum_probs=26.8
Q ss_pred HHHHHHhCCcE------eEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 275 KELRRQLGLRL------FNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 275 ~~l~~~lGl~l------~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
..+.+.+|.++ =-||+++.. ++..|+||+|++-|=.
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~gG 220 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGSGG 220 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecCCC
Confidence 44555677776 459999964 3579999999998844
No 126
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=30.50 E-value=96 Score=30.00 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=48.6
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CC-ccEEEEccCchhHHHHHH
Q 019319 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GP-FDIVLHKLTGKEWRQILE 92 (343)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~-fDvilhK~t~~~~~~~l~ 92 (343)
-+..+++-.|.+. =+.. -+|..++.+.|-..+.++.+..-... += +|+|..|...+.....+.
T Consensus 43 L~gk~~~~lF~~pSTRTR---~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a 119 (305)
T PRK00856 43 LRGKTVANLFFEPSTRTR---LSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLA 119 (305)
T ss_pred CCCcEEEEEeccCCcchH---HHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHH
Confidence 3466677666552 2222 23888999999999988876522111 13 899999987754433443
Q ss_pred HHHHhCCCceeeChhh
Q 019319 93 EYRQTHPEVTVLDPPY 108 (343)
Q Consensus 93 ~~~~~~p~v~ViDp~~ 108 (343)
+| ..+||||-..
T Consensus 120 ~~----~~vPVINa~~ 131 (305)
T PRK00856 120 ES----SDVPVINAGD 131 (305)
T ss_pred HH----CCCCEEECCC
Confidence 33 5799999864
No 127
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=29.36 E-value=33 Score=27.05 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=15.9
Q ss_pred EecccCC--CcEEEEEEECCE
Q 019319 198 QEFVNHG--GVLFKVYIVGEA 216 (343)
Q Consensus 198 QEFI~h~--g~~~Kv~VIG~~ 216 (343)
+.|+||+ |-+|+|..+|+.
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~ 23 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEG 23 (88)
T ss_dssp --EEEETTTEEEEEEEEECTT
T ss_pred cccccCCccchheeeeeCCCc
Confidence 6799998 999999999996
No 128
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=28.76 E-value=1.7e+02 Score=31.26 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=65.2
Q ss_pred CCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
+.+.+|+|+-++. +.||.. +-+|.++. + .++--.|.+... + .. + .+-..|.||+.+ - ++.+
T Consensus 482 ~~~~~iEP~Wk~l-lsNKai-LplLW~l~--p-~Hp~LLpayfe~----d--~~-l----~~~~yV~KPi~G--R-EG~n 542 (619)
T PRK10507 482 PEVLVFEPLWTVI-PGNKAI-LPVLWSLF--P-HHRYLLDTDFTV----N--DE-L----VKTGYAVKPIAG--R-CGSN 542 (619)
T ss_pred CceEEEcccHHhh-cccHHH-HHHHHHhC--C-CCcccccccccC----C--cc-c----ccCCeEeccCCC--c-CCCC
Confidence 6799999997654 458765 55566542 1 122233333311 1 11 1 122599999994 3 6778
Q ss_pred eEEEeChh-hHhc----c-CCCeEEEecccCC---C--cEEEEEEECCEEEEE-EEec
Q 019319 179 LSLAYDQY-SLKK----L-EPPLVLQEFVNHG---G--VLFKVYIVGEAIKVV-RRFS 224 (343)
Q Consensus 179 m~iv~~~~-~L~~----l-~~p~v~QEFI~h~---g--~~~Kv~VIG~~v~~~-~R~s 224 (343)
|.|+.+.. .+.+ + +.+.|.|+|++=+ | ..+=+++|||+.... .|.+
T Consensus 543 V~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 543 IDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred EEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 99997632 2222 1 4679999999842 2 245789999987755 7765
No 129
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.38 E-value=2e+02 Score=26.88 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHHHHHhhhhhccCCCc--cccCCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCC
Q 019319 5 KEEIEEQTREEELLSFPQ--TQQQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQN 66 (343)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~VGy~l~~kK~~~~---~~~~l~~~a~~~Gi~~v~ID~~ 66 (343)
++.|.+-++++.--.-.. .....+..+||..++.-. ..| ....+.++|+++|+.+...+..
T Consensus 35 r~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~-~~~~~~l~~gi~~~~~~~g~~~~~~~~~ 100 (328)
T PRK11303 35 VEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLE-NTSYARIAKYLERQARQRGYQLLIACSD 100 (328)
T ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCC-CchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 455666666766532222 123455689999986421 112 1234666888899998766543
No 130
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.38 E-value=65 Score=25.46 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=34.2
Q ss_pred cccchHHHhhhhhcceEEE--EeeCCCCCCcCCCccEEEEccCchhHH---HHHHHHHHh-CCCceeeChhh
Q 019319 43 SFLQPKLEGLARNKGILFV--AIDQNRPLSDQGPFDIVLHKLTGKEWR---QILEEYRQT-HPEVTVLDPPY 108 (343)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v--~ID~~~~l~~q~~fDvilhK~t~~~~~---~~l~~~~~~-~p~v~ViDp~~ 108 (343)
|+.-.++.++++++|+++. ..+...--.....+|+||. +...+ ..+++.... +-.+.+|||-+
T Consensus 17 S~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill---~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 17 SLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLL---APQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEE---CchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 3455678889999998753 2333221111346899983 32332 333433332 23567788753
No 131
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=27.39 E-value=2.5e+02 Score=27.45 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=47.5
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~ 93 (343)
-...+|+..|.+.= +.++ +|..++.+.|-.++.+|.+..-... .=+|+|..|...+.. +++
T Consensus 44 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~---~~~ 117 (334)
T PRK01713 44 LKGKNIALIFEKTSTRTRC---AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSI---VNE 117 (334)
T ss_pred CCCCEEEEEeCCCCchHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHH---HHH
Confidence 45677887777622 2222 3788999999999988876421111 248999999876433 333
Q ss_pred HHHhCCCceeeChh
Q 019319 94 YRQTHPEVTVLDPP 107 (343)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (343)
+. ++-++||||=.
T Consensus 118 ~a-~~~~vPVINa~ 130 (334)
T PRK01713 118 LA-EYAGVPVFNGL 130 (334)
T ss_pred HH-HhCCCCEEECC
Confidence 33 34579999953
No 132
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=26.84 E-value=2e+02 Score=28.82 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=38.6
Q ss_pred EEEecCCCCCCCCceeeEEEeChhhHhccC----------------CCeEEEecccCCCc------EEEEEEECCEEEEE
Q 019319 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHGGV------LFKVYIVGEAIKVV 220 (343)
Q Consensus 163 ~VvKp~~a~GS~~sh~m~iv~~~~~L~~l~----------------~p~v~QEFI~h~g~------~~Kv~VIG~~v~~~ 220 (343)
+|+|... |+ .+-++..|.+.+++..++ ..+++||=|.+--+ .==||+||..|++.
T Consensus 260 ViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 260 VIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 4678433 55 677777888888877651 14899998876321 22478999888865
Q ss_pred -EEe
Q 019319 221 -RRF 223 (343)
Q Consensus 221 -~R~ 223 (343)
.|.
T Consensus 337 fYRv 340 (403)
T TIGR02049 337 FYRV 340 (403)
T ss_pred EEEe
Confidence 444
No 133
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=26.74 E-value=1.5e+02 Score=29.23 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=47.1
Q ss_pred CceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHHH
Q 019319 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 27 ~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~~ 94 (343)
-...+|+..|.+.=.+. .-+|..++.+.|-.++.+|.+..-... .=+|+|..|...+.. ++++
T Consensus 43 L~gk~l~~lF~epSTRT--R~SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~---~~~~ 117 (336)
T PRK03515 43 LTGKNIALIFEKDSTRT--RCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEI---VETL 117 (336)
T ss_pred CCCCEEEEEecCCChhH--HHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHH---HHHH
Confidence 44566777776622111 123888999999999999876421111 138999999876533 3343
Q ss_pred HHhCCCceeeCh
Q 019319 95 RQTHPEVTVLDP 106 (343)
Q Consensus 95 ~~~~p~v~ViDp 106 (343)
. ++.++||||=
T Consensus 118 a-~~~~vPVINa 128 (336)
T PRK03515 118 A-EYAGVPVWNG 128 (336)
T ss_pred H-HhCCCCEEEC
Confidence 3 4468999993
No 134
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=26.31 E-value=2e+02 Score=26.58 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=22.6
Q ss_pred EEEEecccc----cccccchHHHhhhhhcceEEEEeeCC
Q 019319 32 VGYALTSKK----TKSFLQPKLEGLARNKGILFVAIDQN 66 (343)
Q Consensus 32 VGy~l~~kK----~~~~~~~~l~~~a~~~Gi~~v~ID~~ 66 (343)
||+.++-.. +....++.+.+++++.|+++..++..
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~ 40 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV 40 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 566665333 23334456777888899998887765
No 135
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=25.91 E-value=2.7e+02 Score=27.24 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=46.9
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~ 93 (343)
-...+|+..|.+.= +..+ +|..++.+.|-.++.+|.+..-... .=+|+|+.|...+. .+++
T Consensus 43 L~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~---~~~~ 116 (332)
T PRK04284 43 LKGKNIALIFEKDSTRTRC---AFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQR---TVET 116 (332)
T ss_pred CCCCEEEEEecCCChhHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchH---HHHH
Confidence 44567777776622 2222 3788999999999988886521111 24899999987643 3334
Q ss_pred HHHhCCCceeeCh
Q 019319 94 YRQTHPEVTVLDP 106 (343)
Q Consensus 94 ~~~~~p~v~ViDp 106 (343)
+. ++-++||||=
T Consensus 117 ~a-~~s~vPVINa 128 (332)
T PRK04284 117 LA-EYSGVPVWNG 128 (332)
T ss_pred HH-HhCCCCEEEC
Confidence 33 3457999993
No 136
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=25.47 E-value=1.1e+02 Score=29.97 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=46.9
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~ 93 (343)
-...+|+..|.+.= +.++ +|..++.+.|..++.+|++..-... .=+|+|+.|...+. .+++
T Consensus 44 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~---~~~~ 117 (331)
T PRK02102 44 LEGKNIALIFEKTSTRTRC---AFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQE---IVEE 117 (331)
T ss_pred CCCCEEEEEeCCCChhHHH---HHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchH---HHHH
Confidence 34667777776622 2222 3788999999999988876421111 24899999987643 3334
Q ss_pred HHHhCCCceeeCh
Q 019319 94 YRQTHPEVTVLDP 106 (343)
Q Consensus 94 ~~~~~p~v~ViDp 106 (343)
+. ++-++||||=
T Consensus 118 ~a-~~~~vPVINa 129 (331)
T PRK02102 118 LA-KYSGVPVWNG 129 (331)
T ss_pred HH-HhCCCCEEEC
Confidence 33 3457999994
No 137
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=24.77 E-value=1.8e+02 Score=29.19 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=34.8
Q ss_pred EEEecCCCCCCCCceeeEEEeChhhHhccC----------------CCeEEEecccCC----C--cEEEEEEECCEEEEE
Q 019319 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHG----G--VLFKVYIVGEAIKVV 220 (343)
Q Consensus 163 ~VvKp~~a~GS~~sh~m~iv~~~~~L~~l~----------------~p~v~QEFI~h~----g--~~~Kv~VIG~~v~~~ 220 (343)
+|+|... |+ .+-|+..|.+.+++..++ ..+++||=|.+- + ..-=||+||.+|++.
T Consensus 263 V~VKAD~--GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvgg 339 (404)
T PF08886_consen 263 VFVKADA--GT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGG 339 (404)
T ss_dssp EEEEEE---GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 5678533 55 677778888988887651 248999988763 1 133589999998865
Q ss_pred -EEe
Q 019319 221 -RRF 223 (343)
Q Consensus 221 -~R~ 223 (343)
.|.
T Consensus 340 fyRv 343 (404)
T PF08886_consen 340 FYRV 343 (404)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 454
No 138
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=24.31 E-value=1.3e+02 Score=29.45 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=46.9
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC-------------CccEEEEccCchhHHHHHHH
Q 019319 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG-------------PFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~-------------~fDvilhK~t~~~~~~~l~~ 93 (343)
+..+|+-+|.| +=+.+. +|..+++++|-+++-++....-...| ..|+++.|-..+-..+.+.+
T Consensus 45 ~gk~v~~lFFEpSTRTr~---SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~ 121 (316)
T COG0540 45 KGKVVANLFFEPSTRTRL---SFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAE 121 (316)
T ss_pred cCcEEEEEEecCCCchhh---hHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHH
Confidence 34577777776 333322 37779999999998888766444433 48999988876544445555
Q ss_pred HHHhCCCc-eeeC
Q 019319 94 YRQTHPEV-TVLD 105 (343)
Q Consensus 94 ~~~~~p~v-~ViD 105 (343)
|. ++ +|||
T Consensus 122 ~~----~~~pvIN 130 (316)
T COG0540 122 FS----GVNPVIN 130 (316)
T ss_pred hc----CCCceEE
Confidence 54 44 6887
No 139
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=23.18 E-value=1.3e+02 Score=29.00 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=48.0
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~ 93 (343)
-+..+|+-.|.+. =+..+ +|..++.+.|-..+.++.+..-... .=+|+|+.|...+. .+++
T Consensus 36 L~gk~~~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~---~~~~ 109 (302)
T PRK14805 36 LAGKSVVMLFEKPSLRTRV---SFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHS---TIEQ 109 (302)
T ss_pred CCCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChh---HHHH
Confidence 4466777776652 22222 3788999999999888865421111 24899999987643 3334
Q ss_pred HHHhCCCceeeChhh
Q 019319 94 YRQTHPEVTVLDPPY 108 (343)
Q Consensus 94 ~~~~~p~v~ViDp~~ 108 (343)
+. ++-++||||-..
T Consensus 110 ~a-~~~~vPVINa~~ 123 (302)
T PRK14805 110 LA-EHGSVPVINALC 123 (302)
T ss_pred HH-HhCCCCEEECCC
Confidence 33 446799999654
No 140
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.01 E-value=1.4e+02 Score=28.78 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=47.6
Q ss_pred CceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHHH
Q 019319 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 27 ~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~~ 94 (343)
-...+|+..|.+.=.+.- -+|..++.+.|-.++.+|.+..-... .=+|+|..|...+. .++++
T Consensus 41 L~gk~v~~lF~e~STRTR--~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~---~~~~~ 115 (304)
T PRK00779 41 LKGKTLAMIFEKPSTRTR--VSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHE---TLEEL 115 (304)
T ss_pred CCCCEEEEEecCCCchHH--HHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChh---HHHHH
Confidence 456677777766221111 23888999999999999876521111 13899999987643 33333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
+++-+++|||=-
T Consensus 116 -a~~~~vPVINag 127 (304)
T PRK00779 116 -AEYSTVPVINGL 127 (304)
T ss_pred -HHhCCCCEEeCC
Confidence 345678999854
No 141
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=22.76 E-value=1.5e+02 Score=28.64 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=46.7
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~ 93 (343)
-+..+|+-.|.+. =+.++ +|..++.+.|-.++.+|.+..-... .=+|+|+.|..+... +++
T Consensus 37 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~---~~~ 110 (304)
T TIGR00658 37 LKGKTLALIFEKPSTRTRV---SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHED---VEE 110 (304)
T ss_pred CCCCEEEEEecCCCcchHH---HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHH---HHH
Confidence 3466777776662 22222 3788999999999999875521111 248999999876433 333
Q ss_pred HHHhCCCceeeCh
Q 019319 94 YRQTHPEVTVLDP 106 (343)
Q Consensus 94 ~~~~~p~v~ViDp 106 (343)
+ +++-+++|||=
T Consensus 111 ~-a~~~~vPVINa 122 (304)
T TIGR00658 111 L-AKYASVPVING 122 (304)
T ss_pred H-HHhCCCCEEEC
Confidence 3 34457999993
No 142
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=22.62 E-value=3.6e+02 Score=25.17 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhccCCCcc--ccCCceEEEEEEeccccccc--ccchHHHhhhhhcceEEEEeeCC
Q 019319 6 EEIEEQTREEELLSFPQT--QQQSKLVVVGYALTSKKTKS--FLQPKLEGLARNKGILFVAIDQN 66 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~VGy~l~~kK~~~--~~~~~l~~~a~~~Gi~~v~ID~~ 66 (343)
+.|.+-++++.--....+ ....+..+||..++.-.-.. -....+.++|+++|+.+...+..
T Consensus 35 ~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~ 99 (327)
T TIGR02417 35 ERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSD 99 (327)
T ss_pred HHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344455555554322221 23445689999986422111 11234666888999998776554
No 143
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=22.48 E-value=4e+02 Score=25.77 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=48.5
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCC-CC--c--------CCCccEEEEccCchhHHHHHHHH
Q 019319 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRP-LS--D--------QGPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~-l~--~--------q~~fDvilhK~t~~~~~~~l~~~ 94 (343)
-...+|+..|.+. =+..+ +|..++.+.|-..+.+|.... +. . ..-+|+|+.|...+.. ++.+
T Consensus 41 L~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~~~D~iv~R~~~~~~---~~~~ 114 (311)
T PRK14804 41 MSGRSLAMLFQKTSTRTRV---SFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSRNVSVIMARLKKHED---LLVM 114 (311)
T ss_pred CCCCEEEEEEcCCchhHHH---HHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHhcCCEEEEeCCChHH---HHHH
Confidence 4567788777662 22222 378899999999999988431 11 1 1257999999876533 3333
Q ss_pred HHhCCCceeeChhh
Q 019319 95 RQTHPEVTVLDPPY 108 (343)
Q Consensus 95 ~~~~p~v~ViDp~~ 108 (343)
+++..+||||=..
T Consensus 115 -a~~~~vPVINag~ 127 (311)
T PRK14804 115 -KNGSQVPVINGCD 127 (311)
T ss_pred -HHHCCCCEEECCC
Confidence 4556899999653
No 144
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=21.80 E-value=2.1e+02 Score=22.60 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=16.2
Q ss_pred chHHHhhhhhcceEEEEeeCCC
Q 019319 46 QPKLEGLARNKGILFVAIDQNR 67 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~ 67 (343)
...+..++++.|++++.++.+.
T Consensus 16 ~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 16 KNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred HHHHHHHHHHCCCEEEEcCCCC
Confidence 3446667888999998887654
No 145
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=21.56 E-value=1.5e+02 Score=28.54 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=47.8
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeC-CCCCCcC------------CCccEEEEccCchhHHHHHH
Q 019319 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQ-NRPLSDQ------------GPFDIVLHKLTGKEWRQILE 92 (343)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~a~~~Gi~~v~ID~-~~~l~~q------------~~fDvilhK~t~~~~~~~l~ 92 (343)
-...+|+..|.+ +=+.++ +|..++.++|-..+.++. +..-... .=+|+|..|...+.. ++
T Consensus 37 L~gk~v~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~---~~ 110 (301)
T TIGR00670 37 LKGKILANLFFEPSTRTRL---SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGA---AR 110 (301)
T ss_pred CCCCEEEEEeccCCchhHh---HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhH---HH
Confidence 345667766655 222222 378899999999999988 4321111 148999999876433 33
Q ss_pred HHHHhCCCceeeChhh
Q 019319 93 EYRQTHPEVTVLDPPY 108 (343)
Q Consensus 93 ~~~~~~p~v~ViDp~~ 108 (343)
++ +++-++||||-..
T Consensus 111 ~~-a~~s~vPVINa~~ 125 (301)
T TIGR00670 111 LA-AEVSEVPVINAGD 125 (301)
T ss_pred HH-HhhCCCCEEeCCC
Confidence 33 3445899999875
No 146
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=21.27 E-value=1.7e+02 Score=24.58 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccC---chhHHHHHHHHHHhCCCceeeChh
Q 019319 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 48 ~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t---~~~~~~~l~~~~~~~p~v~ViDp~ 107 (343)
.+.+++.+.|+.+..|+.+..+. .||+|+-=.. +....+.|.+|.++ -|+++.-+-
T Consensus 30 ~~~~~l~~~gi~~d~v~~~~~l~---~y~~vi~P~~~~~~~~~~~~l~~~v~~-GG~li~~~~ 88 (154)
T cd03143 30 ALYRALRELGIPVDVVPPDADLS---GYKLVVLPDLYLLSDATAAALRAYVEN-GGTLVAGPR 88 (154)
T ss_pred HHHHHHHHCCCCEEEECCCCCcc---cCCEEEECchhcCCHHHHHHHHHHHHC-CCEEEEecC
Confidence 46778889999999888766554 7888874322 23456777888754 566666443
No 147
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.96 E-value=4.1e+02 Score=21.22 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=43.5
Q ss_pred cccchHHHhhhhhcceEEEEe--eCCCCCCcCCCccEEEEccCchhHHHHHHHHHHh-CCCceeeChhhHHHHhcCHHH
Q 019319 43 SFLQPKLEGLARNKGILFVAI--DQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQS 118 (343)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~I--D~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~-~p~v~ViDp~~ai~~~~dR~~ 118 (343)
++.-.++.++|+++|+++... ....--.....+|+||.=-.-......+++.... +-.+.+||+-.-....+|=-.
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~ 92 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDG 92 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHH
Confidence 466677889999999886522 1221111245789999533222233444444433 345788998776655555433
Done!