Query 019319
Match_columns 343
No_of_seqs 192 out of 459
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.2E-61 4.3E-66 471.2 31.0 306 25-335 14-336 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 1.2E-37 4E-42 296.8 28.4 295 23-333 5-321 (324)
3 3t7a_A Inositol pyrophosphate 100.0 2.3E-33 7.8E-38 264.4 19.2 275 24-335 2-315 (330)
4 1i7n_A Synapsin II; synapse, p 100.0 6.3E-30 2.1E-34 244.4 21.7 242 51-334 33-307 (309)
5 2p0a_A Synapsin-3, synapsin II 100.0 1.6E-29 5.6E-34 244.5 20.6 240 52-333 50-323 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 1.3E-28 4.5E-33 242.6 20.3 242 51-334 145-419 (422)
7 3r5x_A D-alanine--D-alanine li 99.9 5.2E-24 1.8E-28 201.0 19.3 235 46-315 24-273 (307)
8 4eg0_A D-alanine--D-alanine li 99.9 5.4E-24 1.8E-28 202.7 19.4 259 29-318 13-292 (317)
9 1uc8_A LYSX, lysine biosynthes 99.9 8.8E-24 3E-28 195.4 19.1 232 44-316 11-260 (280)
10 3se7_A VANA; alpha-beta struct 99.9 2.6E-23 8.8E-28 200.7 20.9 232 49-316 27-316 (346)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.4E-22 4.8E-27 190.2 20.5 235 47-315 24-280 (306)
12 4fu0_A D-alanine--D-alanine li 99.9 4.8E-22 1.6E-26 192.9 18.4 214 74-316 97-323 (357)
13 2i87_A D-alanine-D-alanine lig 99.9 4.8E-22 1.7E-26 192.9 17.7 235 47-315 25-316 (364)
14 1ehi_A LMDDL2, D-alanine:D-lac 99.9 1.9E-21 6.4E-26 190.1 21.1 241 47-315 25-326 (377)
15 3k3p_A D-alanine--D-alanine li 99.9 1.9E-21 6.6E-26 190.9 20.1 256 30-315 38-346 (383)
16 3tqt_A D-alanine--D-alanine li 99.9 3.3E-21 1.1E-25 188.5 21.0 214 74-316 98-327 (372)
17 2fb9_A D-alanine:D-alanine lig 99.9 9.2E-21 3.1E-25 181.3 23.1 207 72-316 74-296 (322)
18 3e5n_A D-alanine-D-alanine lig 99.9 2.5E-21 8.4E-26 190.2 19.3 275 28-332 21-372 (386)
19 3i12_A D-alanine-D-alanine lig 99.9 4.7E-21 1.6E-25 186.5 20.9 226 73-331 97-352 (364)
20 1e4e_A Vancomycin/teicoplanin 99.9 7.8E-21 2.7E-25 182.9 20.0 206 74-315 90-315 (343)
21 3ln6_A Glutathione biosynthesi 99.9 7.9E-21 2.7E-25 200.6 19.5 233 45-312 429-725 (750)
22 3lwb_A D-alanine--D-alanine li 99.9 1.7E-20 5.8E-25 183.4 19.3 214 74-316 109-341 (373)
23 2pvp_A D-alanine-D-alanine lig 99.9 1.9E-20 6.6E-25 182.7 19.2 219 74-328 107-346 (367)
24 3ln7_A Glutathione biosynthesi 99.8 1.1E-19 3.6E-24 191.9 19.6 231 44-312 433-731 (757)
25 1gsa_A Glutathione synthetase; 99.8 1.8E-18 6E-23 162.2 16.7 238 44-330 19-313 (316)
26 3ax6_A Phosphoribosylaminoimid 99.8 1.7E-16 5.9E-21 154.1 24.0 226 46-312 13-265 (380)
27 3q2o_A Phosphoribosylaminoimid 99.7 1.1E-16 3.7E-21 156.5 20.3 238 30-312 15-282 (389)
28 3vot_A L-amino acid ligase, BL 99.7 3.4E-16 1.2E-20 154.3 24.1 230 47-317 18-298 (425)
29 3aw8_A PURK, phosphoribosylami 99.7 5E-16 1.7E-20 150.3 22.6 226 46-312 11-266 (369)
30 3orq_A N5-carboxyaminoimidazol 99.7 9E-16 3.1E-20 149.7 23.1 236 29-312 12-278 (377)
31 4dim_A Phosphoribosylglycinami 99.7 2.1E-16 7.1E-21 154.4 18.5 232 46-317 19-287 (403)
32 4e4t_A Phosphoribosylaminoimid 99.7 4.4E-16 1.5E-20 154.3 20.8 239 28-312 34-307 (419)
33 3k5i_A Phosphoribosyl-aminoimi 99.7 7.9E-17 2.7E-21 158.7 14.9 245 30-316 25-298 (403)
34 4ffl_A PYLC; amino acid, biosy 99.7 1.5E-15 5.1E-20 146.6 20.9 208 46-312 13-248 (363)
35 2dwc_A PH0318, 433AA long hypo 99.7 9E-16 3.1E-20 151.7 18.4 231 45-315 30-301 (433)
36 3eth_A Phosphoribosylaminoimid 99.7 2.7E-15 9.1E-20 145.8 20.9 224 45-312 12-246 (355)
37 1kjq_A GART 2, phosphoribosylg 99.7 9.4E-16 3.2E-20 149.0 17.7 229 45-315 22-288 (391)
38 2z04_A Phosphoribosylaminoimid 99.7 2.5E-16 8.4E-21 152.1 13.1 219 46-312 13-258 (365)
39 3df7_A Putative ATP-grAsp supe 99.7 2.1E-15 7.1E-20 143.3 16.6 181 73-312 68-252 (305)
40 2r85_A PURP protein PF1517; AT 99.6 6.2E-15 2.1E-19 139.6 18.5 227 45-311 12-290 (334)
41 3ouz_A Biotin carboxylase; str 99.6 1.9E-14 6.5E-19 142.9 17.6 175 99-311 102-299 (446)
42 2pn1_A Carbamoylphosphate synt 99.6 1.4E-14 4.8E-19 137.5 15.0 169 99-312 97-276 (331)
43 1a9x_A Carbamoyl phosphate syn 99.6 2.4E-14 8.1E-19 156.8 17.8 227 44-310 580-847 (1073)
44 3lp8_A Phosphoribosylamine-gly 99.6 5.5E-14 1.9E-18 140.1 18.7 202 74-311 83-311 (442)
45 1a9x_A Carbamoyl phosphate syn 99.6 6.1E-14 2.1E-18 153.6 19.7 228 46-310 30-305 (1073)
46 2ip4_A PURD, phosphoribosylami 99.6 7.7E-14 2.6E-18 137.1 18.3 180 100-312 85-285 (417)
47 3mjf_A Phosphoribosylamine--gl 99.6 7.8E-14 2.7E-18 138.5 18.3 182 99-312 90-297 (431)
48 2vpq_A Acetyl-COA carboxylase; 99.6 1.1E-13 3.9E-18 137.3 19.2 228 46-312 13-296 (451)
49 2yrx_A Phosphoribosylglycinami 99.6 1.1E-13 3.7E-18 137.7 18.9 179 99-312 106-312 (451)
50 2dzd_A Pyruvate carboxylase; b 99.6 1.1E-13 3.8E-18 137.8 18.8 226 47-312 19-300 (461)
51 3vmm_A Alanine-anticapsin liga 99.5 1.9E-13 6.5E-18 137.5 19.0 172 99-310 124-332 (474)
52 2yw2_A Phosphoribosylamine--gl 99.5 8.6E-14 2.9E-18 137.0 16.1 181 99-312 85-291 (424)
53 2xcl_A Phosphoribosylamine--gl 99.5 7.5E-14 2.6E-18 137.3 14.4 181 99-312 85-291 (422)
54 1vkz_A Phosphoribosylamine--gl 99.5 2.2E-13 7.4E-18 134.2 16.8 180 102-315 93-295 (412)
55 1ulz_A Pyruvate carboxylase N- 99.5 1.8E-13 6E-18 135.9 14.8 177 99-312 97-295 (451)
56 3glk_A Acetyl-COA carboxylase 99.5 1E-13 3.6E-18 141.5 12.6 215 45-312 111-368 (540)
57 2w70_A Biotin carboxylase; lig 99.5 3.5E-13 1.2E-17 133.7 15.7 176 99-312 98-296 (449)
58 2qk4_A Trifunctional purine bi 99.5 3.7E-13 1.3E-17 133.8 15.2 181 99-312 111-318 (452)
59 3u9t_A MCC alpha, methylcroton 99.5 1.6E-13 5.5E-18 143.6 10.7 228 45-311 39-321 (675)
60 3jrx_A Acetyl-COA carboxylase 99.4 3.1E-13 1E-17 139.2 11.7 179 99-312 163-384 (587)
61 3hbl_A Pyruvate carboxylase; T 99.4 2.2E-12 7.5E-17 141.8 17.6 226 46-312 16-298 (1150)
62 2qf7_A Pyruvate carboxylase pr 99.4 1.5E-12 5.2E-17 143.3 14.9 177 99-312 117-316 (1165)
63 1w96_A ACC, acetyl-coenzyme A 99.4 1.6E-12 5.6E-17 132.9 13.5 178 101-312 158-375 (554)
64 3va7_A KLLA0E08119P; carboxyla 99.4 1.8E-12 6.3E-17 143.0 13.0 226 46-310 43-323 (1236)
65 3n6r_A Propionyl-COA carboxyla 99.3 2.9E-12 9.8E-17 134.2 10.8 176 99-312 98-296 (681)
66 2pbz_A Hypothetical protein; N 99.0 2.2E-09 7.4E-14 102.8 13.3 218 46-310 13-271 (320)
67 2r7k_A 5-formaminoimidazole-4- 98.9 2.3E-08 8E-13 97.1 16.9 253 3-310 2-316 (361)
68 2cqy_A Propionyl-COA carboxyla 98.8 1.8E-11 6.3E-16 97.2 -7.0 91 110-214 3-108 (108)
69 3tig_A TTL protein; ATP-grAsp, 98.3 5.8E-06 2E-10 80.6 13.4 151 49-214 20-210 (380)
70 1wr2_A Hypothetical protein PH 98.3 3.4E-07 1.2E-11 83.3 3.5 93 113-216 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.5 0.00012 4E-09 71.9 6.4 89 117-216 6-108 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.4 0.00017 5.7E-09 70.6 6.4 92 115-217 4-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.2 0.00038 1.3E-08 68.2 6.2 91 115-216 4-123 (395)
74 2io8_A Bifunctional glutathion 97.1 0.0042 1.4E-07 64.1 13.0 173 31-224 381-600 (619)
75 2vob_A Trypanothione synthetas 92.0 1.7 5.7E-05 45.1 13.2 157 47-224 413-615 (652)
76 3n6x_A Putative glutathionylsp 91.7 0.095 3.3E-06 52.3 3.4 134 73-219 268-441 (474)
77 3mwd_A ATP-citrate synthase; A 87.0 2.6 8.8E-05 41.3 9.6 95 120-216 12-127 (425)
78 3pff_A ATP-citrate synthase; p 69.8 12 0.00041 39.8 8.4 96 119-216 11-127 (829)
79 3r7f_A Aspartate carbamoyltran 47.5 47 0.0016 30.8 7.4 108 5-122 12-141 (304)
80 3nbm_A PTS system, lactose-spe 39.8 83 0.0028 24.4 6.7 81 42-123 19-103 (108)
81 2l2q_A PTS system, cellobiose- 36.5 98 0.0033 23.6 6.7 80 42-124 17-100 (109)
82 1jx6_A LUXP protein; protein-l 34.9 1.3E+02 0.0044 26.8 8.3 59 5-63 19-80 (342)
83 1js1_X Transcarbamylase; alpha 34.6 87 0.003 29.3 7.1 76 28-107 35-142 (324)
84 3brq_A HTH-type transcriptiona 34.3 51 0.0018 28.6 5.3 42 25-66 15-60 (296)
85 1duv_G Octase-1, ornithine tra 32.9 76 0.0026 29.8 6.4 73 28-107 43-128 (333)
86 3huu_A Transcription regulator 32.2 43 0.0015 29.6 4.4 56 6-66 4-66 (305)
87 1e2b_A Enzyme IIB-cellobiose; 30.3 25 0.00087 27.1 2.2 76 42-120 16-93 (106)
88 1vlv_A Otcase, ornithine carba 30.3 93 0.0032 29.1 6.5 73 28-107 57-142 (325)
89 3gd5_A Otcase, ornithine carba 29.9 1.5E+02 0.005 27.7 7.8 93 5-107 24-132 (323)
90 3jy6_A Transcriptional regulat 29.5 88 0.003 27.0 6.0 42 26-67 4-47 (276)
91 3l49_A ABC sugar (ribose) tran 29.0 86 0.003 27.1 5.9 64 28-107 4-70 (291)
92 3k1t_A Glutamate--cysteine lig 27.9 1.3E+02 0.0045 29.1 7.0 59 162-223 278-360 (432)
93 3gyb_A Transcriptional regulat 27.6 99 0.0034 26.6 6.0 52 27-79 3-65 (280)
94 3n6x_A Putative glutathionylsp 26.8 45 0.0015 33.0 3.7 24 282-307 141-164 (474)
95 1dxh_A Ornithine carbamoyltran 26.1 73 0.0025 29.9 5.0 73 28-107 44-129 (335)
96 4a8p_A Putrescine carbamoyltra 26.0 87 0.003 29.7 5.5 74 27-107 39-125 (355)
97 3tpf_A Otcase, ornithine carba 25.8 76 0.0026 29.4 4.9 92 5-107 13-120 (307)
98 4ep1_A Otcase, ornithine carba 25.7 1.5E+02 0.0052 27.8 7.1 93 5-107 46-154 (340)
99 1xdn_A RNA editing ligase MP52 25.6 1.5E+02 0.0053 27.0 6.8 45 192-245 32-80 (277)
100 2ef0_A Ornithine carbamoyltran 25.4 82 0.0028 29.1 5.1 74 27-107 43-129 (301)
101 3kjx_A Transcriptional regulat 24.9 2.1E+02 0.0072 25.5 7.9 62 5-67 42-108 (344)
102 4a8t_A Putrescine carbamoyltra 24.9 78 0.0027 29.8 4.9 74 27-107 61-147 (339)
103 3tb6_A Arabinose metabolism tr 24.6 1.2E+02 0.0041 26.1 6.0 40 28-67 14-55 (298)
104 2w37_A Ornithine carbamoyltran 24.5 82 0.0028 29.9 5.0 73 28-107 66-151 (359)
105 3l6u_A ABC-type sugar transpor 24.5 93 0.0032 26.9 5.2 42 26-67 5-48 (293)
106 3d6n_B Aspartate carbamoyltran 23.7 45 0.0015 30.8 2.9 71 28-105 34-118 (291)
107 2xko_C PIPX, global nitrogen r 23.6 20 0.00067 27.2 0.4 19 198-216 4-24 (89)
108 1pvv_A Otcase, ornithine carba 23.1 91 0.0031 29.0 5.0 73 28-107 45-130 (315)
109 1oth_A Protein (ornithine tran 23.0 93 0.0032 29.0 5.0 73 28-107 45-130 (321)
110 3s99_A Basic membrane lipoprot 22.4 1.3E+02 0.0044 28.1 6.0 77 25-103 22-113 (356)
111 2i6u_A Otcase, ornithine carba 21.8 1.7E+02 0.0057 27.1 6.4 73 28-107 38-123 (307)
112 4f2g_A Otcase 1, ornithine car 21.0 88 0.003 29.0 4.4 74 27-107 43-129 (309)
113 3cs3_A Sugar-binding transcrip 20.3 2.9E+02 0.0098 23.5 7.6 79 26-106 5-88 (277)
114 3n5b_B ASR0485 protein; PII, P 20.1 25 0.00087 27.6 0.4 23 194-216 23-47 (112)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.2e-61 Score=471.17 Aligned_cols=306 Identities=32% Similarity=0.501 Sum_probs=258.8
Q ss_pred cCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCc------------hhHHHHHH
Q 019319 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE 92 (343)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~------------~~~~~~l~ 92 (343)
..+++++|||||++||.++|++++|+++++++|++++.||++.++..|++||+||||+++ ..+.+.++
T Consensus 14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~ 93 (346)
T 2q7d_A 14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ 93 (346)
T ss_dssp GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999987 25788899
Q ss_pred HHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecC-CCCchHHHHhcCCCCcEEEecCCCC
Q 019319 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD 171 (343)
Q Consensus 93 ~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~-~~~~~~~l~~~~l~fP~VvKp~~a~ 171 (343)
+|..+|||++||||+++|++|.||+.|+++|++..+....++|++|+|+++.+. .+++.+.+...+++||+|+||+.|+
T Consensus 94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH 173 (346)
T ss_dssp HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 999889999999999999999999999999998644444569999999999643 3455555556789999999999999
Q ss_pred CCCCceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecc--ccccc
Q 019319 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR--VSCAA 249 (343)
Q Consensus 172 GS~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~--~s~~~ 249 (343)
||+ +|+|+++++.++|..++.|+|+||||+|+|++|||||||+++++++|+++|+|..+. +..|+|+|.. +++++
T Consensus 174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g 250 (346)
T 2q7d_A 174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPE 250 (346)
T ss_dssp STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTT
T ss_pred cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCC
Confidence 996 999999999999999999999999999999999999999999999999999887653 2356777764 66665
Q ss_pred ccCCCCCCCc--cccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchHHHHHhHHh
Q 019319 250 ASADDADLDP--CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPI 327 (343)
Q Consensus 250 ~~~~~~~~~~--~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~~l~~~l~ 327 (343)
..+.....++ ...++++.++++++|.+++++||++++|||+|++.++| +|||+|||+||||+ |+++|...+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~-g~~~~~~~i~~~l~ 328 (346)
T 2q7d_A 251 SSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYE-GVSEFFTDLLNHIA 328 (346)
T ss_dssp CCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCT-TCTTHHHHHHHHHH
T ss_pred ccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCcccc-ccchHHHHHHHHHH
Confidence 4432221111 12345667889999999999999999999999986455 69999999999999 99999999999999
Q ss_pred hhcccchh
Q 019319 328 KPDTEPVQ 335 (343)
Q Consensus 328 ~~i~~~~~ 335 (343)
+++++++.
T Consensus 329 ~~~~~~~~ 336 (346)
T 2q7d_A 329 TVLQGQST 336 (346)
T ss_dssp HHHHHHHT
T ss_pred HHhhccCC
Confidence 99876543
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=1.2e-37 Score=296.81 Aligned_cols=295 Identities=18% Similarity=0.305 Sum_probs=221.8
Q ss_pred cccCCceEEEEEEecccccccccchHHHhhhhhcceEE--EEeeCCCCCCcCC-CccEEEEccCch--hHHHHHHHHHHh
Q 019319 23 TQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILF--VAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQT 97 (343)
Q Consensus 23 ~~~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~--v~ID~~~~l~~q~-~fDvilhK~t~~--~~~~~l~~~~~~ 97 (343)
+|...+..+||++..+++. ++ .+.++++++|+++ +.+|++.++..++ ++|+++++.++. .+.+.++.+...
T Consensus 5 ~~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~ 80 (324)
T 1z2n_X 5 SMTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKD 80 (324)
T ss_dssp -----CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHH
T ss_pred ccccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 4555567899999988876 45 7889999999999 9999977776666 899999999774 456778888887
Q ss_pred CCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 98 HPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 98 ~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
++|++++|+++++..+.||..+.++|+++ +|++|++.++.+ .+++.+.+...+++||+|+||..++||..++
T Consensus 81 ~~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~ 152 (324)
T 1z2n_X 81 HPKVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAH 152 (324)
T ss_dssp CTTSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGG
T ss_pred CCCCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccce
Confidence 88999999999999999999999999976 899999999852 2223333333457799999999977776779
Q ss_pred eeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeec----------cccc
Q 019319 178 ELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP----------RVSC 247 (343)
Q Consensus 178 ~m~iv~~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~----------~~s~ 247 (343)
++.++.+.++|..++.++++||||++.|++++|+|+|+++..+.|++.+++..++... ...|++. .+++
T Consensus 153 gv~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k 231 (324)
T 1z2n_X 153 QMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDK 231 (324)
T ss_dssp EEEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCH
T ss_pred eeEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhccccccccc
Confidence 9999999999999999999999999889999999999999988888887765432111 1122222 0111
Q ss_pred cc----ccCCC-CCC--CccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchHH
Q 019319 248 AA----ASADD-ADL--DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRA 320 (343)
Q Consensus 248 ~~----~~~~~-~~~--~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~ 320 (343)
.. +...+ ..+ .+......+.+.++++|.++.++||+.++|||++++.++| ++||+|||.+|||+ +++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~-~~~~~~- 308 (324)
T 1z2n_X 232 QDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYG-GKVDFD- 308 (324)
T ss_dssp HHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTT-SCBCHH-
T ss_pred cccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcC-CCCCHH-
Confidence 00 00000 000 0011111122578999999999999999999999974445 68999999999999 999998
Q ss_pred HHHhHHhhhcccc
Q 019319 321 HIYRLPIKPDTEP 333 (343)
Q Consensus 321 ~l~~~l~~~i~~~ 333 (343)
.+.+++.+.+.++
T Consensus 309 ~i~~~l~~~~~~~ 321 (324)
T 1z2n_X 309 WFVEKVALCYTEV 321 (324)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 7778877776543
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=2.3e-33 Score=264.39 Aligned_cols=275 Identities=18% Similarity=0.199 Sum_probs=202.2
Q ss_pred ccCCceEEEEEEecccccccccchHHHhhhhhcc-eEEEEee----CCCCCCcCCCccEEEEccCchhHHHHHHHHHHhC
Q 019319 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKG-ILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTH 98 (343)
Q Consensus 24 ~~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~G-i~~v~ID----~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~ 98 (343)
+++.+.++||.|..+||.+|=.++.+++-..+.| ++++... ++.+.+...-+|++|...++.--.....+|.+.
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~l- 80 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKL- 80 (330)
T ss_dssp ----CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHH-
T ss_pred CCCCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHH-
Confidence 3566789999999999999988888777555544 5554322 345777889999999999885445566666653
Q ss_pred CCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-----------CchHHHHhcCCCCcEEEec
Q 019319 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-----------SIPDVVLKAGLTLPLVAKP 167 (343)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~-----------~~~~~l~~~~l~fP~VvKp 167 (343)
-+.++||++.++..++||..++++|++. +||+|+++++.++.. +..+ ..-..+++|+|+||
T Consensus 81 r~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~-~~g~~l~kPfVeKP 152 (330)
T 3t7a_A 81 RNPFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVE-VNGEVFQKPFVEKP 152 (330)
T ss_dssp HCCEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEE-ETTEEEESSEEEEE
T ss_pred hCCceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhh-hccccccCCeeEcc
Confidence 2559999999999999999999999975 999999999965331 1111 01245789999999
Q ss_pred CCCCCCCCceeeEEEeChhh---Hh-------------------ccCCCeEEEecccCCCcEEEEEEECCEEEEE-EEec
Q 019319 168 LVADGSAKSHELSLAYDQYS---LK-------------------KLEPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFS 224 (343)
Q Consensus 168 ~~a~GS~~sh~m~iv~~~~~---L~-------------------~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~-~R~s 224 (343)
+.| | -|+++|.+.... .. .-+..+++||||+++|+|+||||||++++++ .|+|
T Consensus 153 v~G--s--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s 228 (330)
T 3t7a_A 153 VSA--E--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS 228 (330)
T ss_dssp SBT--T--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC
T ss_pred ccc--c--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC
Confidence 994 3 566666666532 21 1145799999999999999999999999876 5555
Q ss_pred CCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEE
Q 019319 225 LPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVID 304 (343)
Q Consensus 225 lp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViD 304 (343)
|.. .|+|+++. | .|..+.+.. + +++++++|.++++++|++++|||++++++ ++||+|
T Consensus 229 -p~~-~G~~r~N~-----~----gG~~~~~v~-------L--t~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~~V~E 285 (330)
T 3t7a_A 229 -PAL-DGKVERDS-----E----GKEVRYPVI-------L--NAREKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCD 285 (330)
T ss_dssp -TTS-SCBCCBCT-----T----SCBCCEECC-------C--CHHHHHHHHHHHHHTTBSEEEEEEEEETT---EEEEEE
T ss_pred -CCC-CCcEEEcC-----C----CCceeeeec-------C--CHHHHHHHHHHHHHhCCceEEEEEEEECC---ccEEEE
Confidence 421 13344331 1 111111222 2 35679999999999999999999999852 578999
Q ss_pred ecCCCCCccCCcchHHHHHhHHhhhcccchh
Q 019319 305 INYFPGEVWENAGVRAHIYRLPIKPDTEPVQ 335 (343)
Q Consensus 305 VN~fPg~~~gv~~~~~~l~~~l~~~i~~~~~ 335 (343)
||.||-.+ +-++|+..++..|.+++.++..
T Consensus 286 VNg~~fvk-~~~~yyd~~a~il~~~~~~~~~ 315 (330)
T 3t7a_A 286 VNGFSFVK-NSMKYYDDCAKILGNIVMRELA 315 (330)
T ss_dssp EEESCCCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCcccc-CchhHHHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999988888776554
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=6.3e-30 Score=244.38 Aligned_cols=242 Identities=14% Similarity=0.162 Sum_probs=176.0
Q ss_pred hhhhhcceEEEEeeCCCCCC-----cCC-------CccEEEEccCchh------HHHHHHHHHHhCCCceeeChhhHHHH
Q 019319 51 GLARNKGILFVAIDQNRPLS-----DQG-------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (343)
Q Consensus 51 ~~a~~~Gi~~v~ID~~~~l~-----~q~-------~fDvilhK~t~~~------~~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (343)
+.++.+++++..++...+.. +.| .+|++|.|..+.. ++..+..+.. .|+++||++++|.+
T Consensus 33 e~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~vl~~le~--~GvpviN~~~sI~~ 110 (309)
T 1i7n_A 33 EQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQY--AGLPSINSLESIYN 110 (309)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHHHHHHHHH--TTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHHHHHHHHH--CCccccCCHHHHHH
Confidence 46677788887776665322 122 5899999997642 3444444444 49999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhH
Q 019319 113 LHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (343)
Q Consensus 113 ~~dR----~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L 188 (343)
|.|| ..++++|+++++ .++|.|.+.... +. .+ ....++||+|+||.. || ++.+|.++.+++++
T Consensus 111 ~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~-~~---~~--~~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~~ 177 (309)
T 1i7n_A 111 FCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYP-NH---RE--MLTLPTFPVVVKIGH--AH-SGMGKVKVENHYDF 177 (309)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GG--GSSCCCSSEEEEESS--CS-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeC-Ch---hh--hhhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 678888887732 245854444442 21 12 123579999999988 56 89999999999887
Q ss_pred hcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccc
Q 019319 189 KKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 261 (343)
Q Consensus 189 ~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 261 (343)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|+++. . + +..
T Consensus 178 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~----g~wrtN~--------~--~-----~~~---- 233 (309)
T 1i7n_A 178 QDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKTNT--------G--S-----AML---- 233 (309)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC----TTTSCSC--------C--C-----SSE----
T ss_pred HHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCCeecC--------C--c-----cee----
Confidence 653 67889999999 79999999999999988999742 3354431 1 0 110
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecC--CCCCccCCcc-hHHHHHhHHhhhcccch
Q 019319 262 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGEVWENAG-VRAHIYRLPIKPDTEPV 334 (343)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~~~~~g~~~~ViDVN~--fPg~~~gv~~-~~~~l~~~l~~~i~~~~ 334 (343)
..++.+++.+++|.++++++ |++++|||++++. +| ++||+|||. +||++ |.+. -...+++++.+.+++..
T Consensus 234 e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~-~g-~~~V~EVN~~~~P~~~-~~~~~~~~~ia~~ii~~~~~~~ 307 (309)
T 1i7n_A 234 EQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMPLIG-EHQVEDRQLITDLVISKMNQLL 307 (309)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCS-SCHHHHHHHHHHHHHHHHHHHC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEECCCCCCCcc-chhhhhHHHHHHHHHHHHHHHc
Confidence 12233567899999999999 8999999999986 35 689999999 99999 8764 44566777777665543
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=244.47 Aligned_cols=240 Identities=12% Similarity=0.179 Sum_probs=172.5
Q ss_pred hhhhcceEEEEeeCCCCCC-----cCC--------CccEEEEccCchh------HHHHHHHHHHhCCCceeeChhhHHHH
Q 019319 52 LARNKGILFVAIDQNRPLS-----DQG--------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (343)
Q Consensus 52 ~a~~~Gi~~v~ID~~~~l~-----~q~--------~fDvilhK~t~~~------~~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (343)
.++..++++..++...+.. ..| .+|++|.|..+.. ++..+..+.. .|+++||++++|.+
T Consensus 50 qa~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~vl~~le~--~GvpviN~~~sI~~ 127 (344)
T 2p0a_A 50 QAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQY--GGLPAVNSLYSVYN 127 (344)
T ss_dssp EECGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHHHHHHHHH--TTCCEESCHHHHHH
T ss_pred hhhhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHHHHHHHHH--CCceecCCHHHHHh
Confidence 3344458888877766322 122 6899999997732 3444443443 49999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhH
Q 019319 113 LHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (343)
Q Consensus 113 ~~dR----~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L 188 (343)
|.|| ..++++|.++++ .++|.|.+.... +..++ ...++||+|+||.. || ++.+|.++.+++++
T Consensus 128 ~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~ 194 (344)
T 2p0a_A 128 FCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLDF 194 (344)
T ss_dssp TTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHHH
T ss_pred hCCchHHHHHHHHHHHHCCC----CCCCCCCEEecC-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 778888887732 245854444443 22222 23579999999988 56 89999999999888
Q ss_pred hcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccc
Q 019319 189 KKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 261 (343)
Q Consensus 189 ~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 261 (343)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.| + +. .
T Consensus 195 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~----g~wrtN~~----------~-----~~----~ 250 (344)
T 2p0a_A 195 QDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS----GNWKANTG----------S-----AM----L 250 (344)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS----------S-----EE----E
T ss_pred HHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----CCCeecCC----------c-----eE----E
Confidence 752 66789999999 79999999999999988998742 33554321 0 00 0
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecC--CCCCccCCcc-hHHHHHhHHhhhcccc
Q 019319 262 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGEVWENAG-VRAHIYRLPIKPDTEP 333 (343)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~~~~~g~~~~ViDVN~--fPg~~~gv~~-~~~~l~~~l~~~i~~~ 333 (343)
..++.+++.+++|.++++++ |++++|||++++. +| ++||+|||. .||++ |.+. -...+.+++.+.+.++
T Consensus 251 e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~-~G-~~~VlEVN~~~~P~~~-~~~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 251 EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSK-DG-RDYIIEVMDSSMPLIG-EHVEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCG-GGHHHHHHHHHHHHHHHHHTC
T ss_pred EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEEcCCCCCccc-chhhhHHHHHHHHHHHHHHHh
Confidence 12233567899999999999 8999999999986 35 689999999 99998 8774 3345566666665543
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.96 E-value=1.3e-28 Score=242.65 Aligned_cols=242 Identities=13% Similarity=0.166 Sum_probs=175.3
Q ss_pred hhhhhcceEEEEeeCCCCCCc-----CC-------CccEEEEccCchh------HHHHHHHHHHhCCCceeeChhhHHHH
Q 019319 51 GLARNKGILFVAIDQNRPLSD-----QG-------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (343)
Q Consensus 51 ~~a~~~Gi~~v~ID~~~~l~~-----q~-------~fDvilhK~t~~~------~~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (343)
+.++-.+|++..++...++.. .| .+|++|.|..+.. ++..+..+.. .|++|||++++|.+
T Consensus 145 eqa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr~lE~--~GvpviNs~~sI~~ 222 (422)
T 1pk8_A 145 EQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQY--AGIPSVNSLHSVYN 222 (422)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHHHHHH--TTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHHHHHH--CCccccCCHHHHHH
Confidence 356667788877666553221 22 6899999997632 3444444444 49999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhH
Q 019319 113 LHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (343)
Q Consensus 113 ~~dR----~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L 188 (343)
|.|| ..++++|+++++ .++|.|.+.... +. .+ ....++||+|+||+. || ++.+|.++.+++++
T Consensus 223 ~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~-~~---~~--~i~~~g~PvVvKp~~--GS-~G~GV~lve~~~~l 289 (422)
T 1pk8_A 223 FCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYP-NH---KE--MLSSTTYPVVVKMGH--AH-SGMGKVKVDNQHDF 289 (422)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GG--CCCCSSSSEEEEESS--CC-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCceEecC-ch---hh--hhhccCCCEEEEeCC--CC-ceeCeEEeCCHHHH
Confidence 9999 577888887632 145744444442 21 11 123579999999988 56 89999999999888
Q ss_pred hcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccc
Q 019319 189 KKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 261 (343)
Q Consensus 189 ~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 261 (343)
+.+ +..+++||||+ .|+|+||+|||+++++++|++.. ++|++|.| + +. .
T Consensus 290 ~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~----g~WrtNvg----------~-----g~----~ 345 (422)
T 1pk8_A 290 QDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS----GNWKTNTG----------S-----AM----L 345 (422)
T ss_dssp HHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS----------C-----EE----E
T ss_pred HHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCceeccC----------c-----ee----e
Confidence 753 67789999999 79999999999999988998742 34554321 0 00 0
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecC--CCCCccCCcc-hHHHHHhHHhhhcccch
Q 019319 262 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGEVWENAG-VRAHIYRLPIKPDTEPV 334 (343)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~~~~~g~~~~ViDVN~--fPg~~~gv~~-~~~~l~~~l~~~i~~~~ 334 (343)
..++.+++.+++|.++++++ |++++|||+|++. +| ++||+|||. .||++ |.+. -...+++++.+.++++.
T Consensus 346 e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~-dG-~~~VlEVN~s~~P~~~-g~~~~~~~~IA~~ii~~i~~~~ 419 (422)
T 1pk8_A 346 EQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGK-DG-RDHIIEVVGSSMPLIG-DHQDEDKQLIVELVVNKMTQAL 419 (422)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCT-TCHHHHHHHHHHHHHHHHHCC-
T ss_pred eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEECCCCCCCcc-chhhhHHHHHHHHHHHHHHHhc
Confidence 11233567899999999999 8999999999986 35 689999999 99998 7764 44567777777776654
No 7
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.92 E-value=5.2e-24 Score=200.96 Aligned_cols=235 Identities=14% Similarity=0.181 Sum_probs=163.9
Q ss_pred chHHHhhhhhcceEEEEeeCCCC---CCcCCCccEEEEccCchhHH-HHHHHHHHhCCCceeeCh-hhHHHHhcCHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRP---LSDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSML 120 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~---l~~q~~fDvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~ 120 (343)
-..+.+++++.|++++.+|.+.. +.....+|+++....+.... ..++.+.+. .|++++.| ++++..++||..+.
T Consensus 24 ~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~ 102 (307)
T 3r5x_A 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISK 102 (307)
T ss_dssp HHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHH
Confidence 34577888999999999999853 33345899999988663221 123333322 47888866 99999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CC
Q 019319 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EP 193 (343)
Q Consensus 121 ~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~ 193 (343)
++|+++ +||+|++.++.+.. +.... ....++||+|+||..++ .|.++.++.+.++|.+. +.
T Consensus 103 ~~l~~~-------Gip~p~~~~~~~~~-~~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~ 170 (307)
T 3r5x_A 103 KILRYE-------GIETPDWIELTKME-DLNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDS 170 (307)
T ss_dssp HHHHHT-------TCCCCCEEEEESSS-CCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCS
T ss_pred HHHHHC-------CCCCCCEEEEeChh-hhhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCC
Confidence 999976 89999999996432 22221 12347899999998854 47899999999887753 67
Q ss_pred CeEEEecccCCCcEEEEEEECCEEEEE-EEecCCCCccccCccCCceeeecccc-cccccCCCCCCCccccCCCChHHHH
Q 019319 194 PLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVS-CAAASADDADLDPCVAELPPRPLLE 271 (343)
Q Consensus 194 p~v~QEFI~h~g~~~Kv~VIG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s-~~~~~~~~~~~~~~~~~~p~~~~~~ 271 (343)
++++||||+ |+++.|.|+|+++..+ .+... .++|+|.... ..+....+..+++.. .+.++
T Consensus 171 ~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~~~-----~~~i~ 232 (307)
T 3r5x_A 171 EVVIEKYIK--GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPAEL-----KERVN 232 (307)
T ss_dssp EEEEEECCC--SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCHHH-----HHHHH
T ss_pred CEEEECCcC--CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCHHH-----HHHHH
Confidence 999999996 8999999999986422 11110 1122222211 111111122222221 34679
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 272 RLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 272 ~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
++|.++.++||+. ++++|+++++ | ++||+|||..||+. +.
T Consensus 233 ~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~-~~ 273 (307)
T 3r5x_A 233 KASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMT-QA 273 (307)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCS-TT
T ss_pred HHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCC-cc
Confidence 9999999999998 8999999983 4 79999999999988 54
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.92 E-value=5.4e-24 Score=202.71 Aligned_cols=259 Identities=14% Similarity=0.102 Sum_probs=169.5
Q ss_pred eEEEEEEecc-cccccc---cchHHHhhhhhcceEEEEeeCCCCCCc---CCCccEEEEccCchhH-HHHHHHHHHhCCC
Q 019319 29 LVVVGYALTS-KKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPE 100 (343)
Q Consensus 29 ~~~VGy~l~~-kK~~~~---~~~~l~~~a~~~Gi~~v~ID~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~~~~~~p~ 100 (343)
..+|+..+-- +..+.. +-..+.+++++.|++++.||.+..... ...+|+++..+.+... ...++...+. -|
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~g 91 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YG 91 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cC
Confidence 3456666542 222322 234577888999999999997654222 3579999988765311 0233444432 37
Q ss_pred ceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHH--HhcCCCCcEEEecCCCCCCCCce
Q 019319 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV--LKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 101 v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l--~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
++++ ++++++..++||..+.++|+++ +||+|++.++.+. ++..+.. ....++||+|+||..++ .|.
T Consensus 92 ip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~ 160 (317)
T 4eg0_A 92 IRYTGSGVLGSALGLDKFRTKLVWQQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEG---SSV 160 (317)
T ss_dssp CEESSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------
T ss_pred CCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCC---CCC
Confidence 8888 6779999999999999999976 8999999999643 2333222 01457999999998853 477
Q ss_pred eeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccc
Q 019319 178 ELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 250 (343)
Q Consensus 178 ~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~ 250 (343)
++.++.++++|.+. +.++++||||++ |+++.|.|+|+++..+.+... ..++++|......+.
T Consensus 161 Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~----------~~~~~~~~~k~~~g~ 229 (317)
T 4eg0_A 161 AVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVP----------AGEFYDYHAKYVAND 229 (317)
T ss_dssp CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC-------------------------
T ss_pred CEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEee----------CCceechhhcccCCC
Confidence 89999999887642 568999999964 999999999997432222111 122344433222111
Q ss_pred c--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCccCCcch
Q 019319 251 S--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEVWENAGV 318 (343)
Q Consensus 251 ~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~ 318 (343)
. ..+..+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||..||++ ...-+
T Consensus 230 ~~~~~P~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t-~~s~~ 292 (317)
T 4eg0_A 230 TQYLIPCGLPAEQ-----ETELKRIARRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMT-DHSLP 292 (317)
T ss_dssp CEEESSCSSCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCS-TTSHH
T ss_pred eeEEcCCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCC-cccHH
Confidence 1 1122222221 357899999999999996 8889999985 45 69999999999998 65443
No 9
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.91 E-value=8.8e-24 Score=195.44 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=161.0
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc-------CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNR 116 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~-------q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR 116 (343)
.....+.++++++|++++.+|.+..... ...+|+++++.........+.++.+. -|+++++|++++..+.||
T Consensus 11 ~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK 89 (280)
T 1uc8_A 11 PDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACGDK 89 (280)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHHBH
T ss_pred HHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhCCH
Confidence 3445688999999999999998753321 24689666665432222344444433 478899999999999999
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-----
Q 019319 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----- 191 (343)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l----- 191 (343)
..+.++|++. +|++|++..+.+ .+++.+.+ ..++||+|+||..++ +|+++.++.++++|.+.
T Consensus 90 ~~~~~~l~~~-------gi~~p~~~~~~~-~~~~~~~~--~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~~~ 156 (280)
T 1uc8_A 90 WATSVALAKA-------GLPQPKTALATD-REEALRLM--EAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXXKE 156 (280)
T ss_dssp HHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHCSSEEEECSBCC---BCSHHHHHHHHHC---------
T ss_pred HHHHHHHHHc-------CcCCCCeEeeCC-HHHHHHHH--HHhCCCEEEEECCCC---CcccceecccccccchhhhhHh
Confidence 9999999976 899999998852 22222222 246899999998854 46788888888776541
Q ss_pred ------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCC
Q 019319 192 ------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 265 (343)
Q Consensus 192 ------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p 265 (343)
..++++||||+..+.+++++++|++++.+..+...++. .+ ++. .+ ...+. .+
T Consensus 157 ~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~~~~~-----~~-----~~~---g~-~~~p~-------~l- 214 (280)
T 1uc8_A 157 VLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWI-----TN-----TAR---GG-QAENC-------PL- 214 (280)
T ss_dssp ---CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC----------------------------CEEC-------CC-
T ss_pred hhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEecCCcc-----cc-----ccC---Cc-cccCC-------CC-
Confidence 46899999998778999999999998755333212222 11 110 00 00111 11
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCc
Q 019319 266 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 266 ~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
.+.++++|.++.++||+.++|+|++++.+ | +|++|||..||+. ++.
T Consensus 215 -~~~~~~~~~~~~~~lg~g~~~vD~~~~~~-g--~~~iEiN~r~g~~-~~~ 260 (280)
T 1uc8_A 215 -TEEVARLSVKAAEAVGGGVVAVDLFESER-G--LLVNEVNHTMEFK-NSV 260 (280)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEEEEEEETT-E--EEEEEEETTCCCT-THH
T ss_pred -CHHHHHHHHHHHHHhCCCeEEEEEEEeCC-C--eEEEEEeCCCCcc-chh
Confidence 24689999999999999999999999863 3 8999999999998 653
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.91 E-value=2.6e-23 Score=200.74 Aligned_cols=232 Identities=18% Similarity=0.223 Sum_probs=160.3
Q ss_pred HHhhhhhcceEEEEeeCCCCC--------------------------------------CcCCCccEEEEccCchhHH-H
Q 019319 49 LEGLARNKGILFVAIDQNRPL--------------------------------------SDQGPFDIVLHKLTGKEWR-Q 89 (343)
Q Consensus 49 l~~~a~~~Gi~~v~ID~~~~l--------------------------------------~~q~~fDvilhK~t~~~~~-~ 89 (343)
..+++++.|+++++||.++.- .++..+|+|++-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 566778889999999987532 1123589999888653221 2
Q ss_pred HHHHHHHhCCCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecC
Q 019319 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (343)
Q Consensus 90 ~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (343)
.++.+.+. .|++++.| +.++..++||..+.++|+++ ||++|++.++.+.... ....++||+|+||.
T Consensus 107 ~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 34444432 47888765 89999999999999999976 8999999999643311 23468999999998
Q ss_pred CCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCE----EEEEEEecCCCCccccCccCC
Q 019319 169 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSA 237 (343)
Q Consensus 169 ~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g~~~Kv~VIG~~----v~~~~R~slp~~~~~~~~~~~ 237 (343)
.++ .|.++.++.++++|.+ .+.++++||||+ |+++.|.|+++. +..+.+... ..
T Consensus 174 ~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~~----------~~ 238 (346)
T 3se7_A 174 RSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQITL----------SH 238 (346)
T ss_dssp SCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEECC----------C-
T ss_pred CCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEec----------CC
Confidence 854 3778999999988865 267899999996 999999999883 222222221 23
Q ss_pred ceeee----ccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 238 GVFRF----PRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 238 g~~~~----~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
++|+| ...+..+.. ..+..+++.. .+.++++|.++.++||+ .++++|++++. +| ++|++|||..||
T Consensus 239 ~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~rPG 311 (346)
T 3se7_A 239 GFFKIHQESTPESGSDNSAVTVPADISTTS-----RSLVQDTAKAVYRALGCRGLSRVDLFLTE-DG-KVVLNEVNTFPG 311 (346)
T ss_dssp -------------CGGGSCEESSCCCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECT-TS-CEEEEEEESSCC
T ss_pred CCcCcccchhccccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEeC-CC-CEEEEEEeCCCC
Confidence 45666 333322111 1222222211 34789999999999999 68889999986 35 799999999999
Q ss_pred CccCCc
Q 019319 311 EVWENA 316 (343)
Q Consensus 311 ~~~gv~ 316 (343)
++ +..
T Consensus 312 ~t-~~s 316 (346)
T 3se7_A 312 MT-SYS 316 (346)
T ss_dssp CS-TTC
T ss_pred CC-ccc
Confidence 98 553
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.90 E-value=1.4e-22 Score=190.18 Aligned_cols=235 Identities=18% Similarity=0.219 Sum_probs=163.0
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCc---CCCccEEEEccCch--hHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHH
Q 019319 47 PKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSML 120 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~l~~---q~~fDvilhK~t~~--~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~ 120 (343)
..+.++++++|++++.+|.+..... ...+|+|+.+.... +. ..++...+. -|++++ ++++++..+.||..+.
T Consensus 24 ~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~-~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~ 101 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGED-GTLQGMLEL-MGLPYTGSGVMASALSMDKLRSK 101 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSS-SHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcc-hHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHH
Confidence 4688899999999999999853222 24789999887431 11 122233322 377776 8899999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCCchH------HHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc---
Q 019319 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPD------VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL--- 191 (343)
Q Consensus 121 ~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~------~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l--- 191 (343)
++|+++ +|++|++..+.+. +..+ ......++||+|+||..++ +|.++.++.+.++|.+.
T Consensus 102 ~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~ 169 (306)
T 1iow_A 102 LLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRL 169 (306)
T ss_dssp HHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHH
T ss_pred HHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHH
Confidence 999976 8999999998532 2211 0012468999999998854 46789999999887642
Q ss_pred ----CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeeccccccccc--CCCCCCCccccCCC
Q 019319 192 ----EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELP 265 (343)
Q Consensus 192 ----~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p 265 (343)
+.++++||||+ |++++|.++|+++..+.+.... .+.++|......+.. ..+..+++..
T Consensus 170 ~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~l~~~~---- 233 (306)
T 1iow_A 170 AFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS----------GTFYDYEAKFLSDETQYFCPAGLEASQ---- 233 (306)
T ss_dssp HTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS----------SSSSCHHHHHTCSCCEEESSCCCCHHH----
T ss_pred HHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC----------CCeEchhheecCCCeeEEcCCCCCHHH----
Confidence 57899999996 8999999999986533332211 122222211111100 0122222111
Q ss_pred ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 266 PRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 266 ~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
.+.+.++|.++.++||+. ++++|++++. +| ++|++|||..||+. +.
T Consensus 234 -~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~-~~ 280 (306)
T 1iow_A 234 -EANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMT-SH 280 (306)
T ss_dssp -HHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCS-TT
T ss_pred -HHHHHHHHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCC-CC
Confidence 346789999999999996 8999999975 45 69999999999987 54
No 12
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.88 E-value=4.8e-22 Score=192.87 Aligned_cols=214 Identities=18% Similarity=0.281 Sum_probs=146.6
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-c
Q 019319 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-I 150 (343)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~-~ 150 (343)
.+|+++.=+.+.... ..++.+.+. -|++.+ -++.++..|+||..+.++|++. |||+|++..+.+.... .
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 467777655442111 244555443 477776 6789999999999999999976 8999999998643211 1
Q ss_pred hHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEe
Q 019319 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 223 (343)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~ 223 (343)
.+. ....++||+|+||..+ | .|.+|.++.++++|.+. +.++++|+|| .|+.+-|.|+|+....+.
T Consensus 169 ~~~-~~~~lg~PvvVKP~~g-g--~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~-- 240 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRA-G--SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG-- 240 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTC-S--SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC--
T ss_pred HHH-HHHhcCCCEEEEECCC-C--CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE--
Confidence 111 2346999999999874 3 37899999999998752 6789999999 599999999998633221
Q ss_pred cCCCCccccCccCCceeeeccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeE
Q 019319 224 SLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQF 300 (343)
Q Consensus 224 slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~ 300 (343)
+- .......++|+|......+.. ..+..++++. .+.++++|.++.++||+. +++||++++. +| ++
T Consensus 241 --~v---~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~-----~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~ 308 (357)
T 4fu0_A 241 --RV---DEIELSSGFFDYTEKYTLKSSKIYMPARIDAEA-----EKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EI 308 (357)
T ss_dssp --CC---EEEEECHHHHTSCSBCSSCCEEEESSCSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CE
T ss_pred --EE---EEEEcccccccccccccCCCceEecCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CE
Confidence 10 001112234555444322211 1333443332 457899999999999995 7779999985 45 79
Q ss_pred EEEEecCCCCCccCCc
Q 019319 301 YVIDINYFPGEVWENA 316 (343)
Q Consensus 301 ~ViDVN~fPg~~~gv~ 316 (343)
||+|||..||++ ...
T Consensus 309 ~vlEvNt~PG~t-~~S 323 (357)
T 4fu0_A 309 VFNEVNTIPGFT-SHS 323 (357)
T ss_dssp EEEEEESSCCCS-TTC
T ss_pred EEEEEeCCCCCC-ccc
Confidence 999999999998 543
No 13
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.88 E-value=4.8e-22 Score=192.94 Aligned_cols=235 Identities=18% Similarity=0.172 Sum_probs=157.0
Q ss_pred hHHHhhhhhcceEEEEeeCCCC------------------CC-----------------cCCCccEEEEccCch--hHHH
Q 019319 47 PKLEGLARNKGILFVAIDQNRP------------------LS-----------------DQGPFDIVLHKLTGK--EWRQ 89 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~------------------l~-----------------~q~~fDvilhK~t~~--~~~~ 89 (343)
..+.+++++.|++++.||.+.. +. ....+|+|+..+.+. +. .
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~ed-~ 103 (364)
T 2i87_A 25 QNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGED-G 103 (364)
T ss_dssp HHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEECSSGGGGBCTTSSBCSEEEEECCCSSSCT-T
T ss_pred HHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhcccccccccccccccccccccCCCEEEEeCCCCCCcC-H
Confidence 4567788889999998876531 11 123689999887431 11 1
Q ss_pred HHHHHHHhCCCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCC------CchHHHHhcCCCCc
Q 019319 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS------SIPDVVLKAGLTLP 162 (343)
Q Consensus 90 ~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~------~~~~~l~~~~l~fP 162 (343)
.++...+. .|++++.| ++++..++||..+.++|++. ||++|++..+.+... .+.+ + ...++||
T Consensus 104 ~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~~-~-~~~~g~P 173 (364)
T 2i87_A 104 TIQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEYEKYEHNILKL-V-NDKLNYP 173 (364)
T ss_dssp HHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHHHHHHHHHHHH-H-HHHCCSS
T ss_pred HHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhhcccchhHHHH-H-HHhcCCC
Confidence 23333322 37888866 89999999999999999986 899999999853210 1111 1 2358999
Q ss_pred EEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCcccc
Q 019319 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQD 232 (343)
Q Consensus 163 ~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~~R~slp~~~~~~ 232 (343)
+|+||..++| |.+|.++.++++|... +.++++||||+ |+++.|.|+|+. +....+.
T Consensus 174 vvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~e~--------- 239 (364)
T 2i87_A 174 VFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGNDYPEATWPGEV--------- 239 (364)
T ss_dssp EEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESSSCEECCCEEE---------
T ss_pred EEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCCCcEEeeeEEE---------
Confidence 9999988543 6789999999888652 57899999996 899999999985 2111111
Q ss_pred CccCCceeeeccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCC
Q 019319 233 LSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFP 309 (343)
Q Consensus 233 ~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fP 309 (343)
....++|+|......+.. ..+..+++.. .+.++++|.++.++||+ .++++|++++. +| ++||+|||..|
T Consensus 240 -~~~~~~~~~~~k~~~g~~~~~~pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rp 311 (364)
T 2i87_A 240 -VKDVAFYDYKSKYKDGKVQLQIPADLDEDV-----QLTLRNMALEAFKATDCSGLVRADFFVTE-DN-QIYINETNAMP 311 (364)
T ss_dssp -CCSCCC-----------CCEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSC
T ss_pred -ecCCCcCCHHHcccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEec-CC-CEEEEEEeCCC
Confidence 111234554433221111 1222222211 35789999999999999 58899999975 45 69999999999
Q ss_pred CCccCC
Q 019319 310 GEVWEN 315 (343)
Q Consensus 310 g~~~gv 315 (343)
|++ ..
T Consensus 312 g~t-~~ 316 (364)
T 2i87_A 312 GFT-AF 316 (364)
T ss_dssp CCS-TT
T ss_pred CCC-ch
Confidence 987 54
No 14
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.88 E-value=1.9e-21 Score=190.13 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=165.0
Q ss_pred hHHHhhh-hhcceEEEEeeCCCC--------------------CC--------------------cCCCccEEEEccCch
Q 019319 47 PKLEGLA-RNKGILFVAIDQNRP--------------------LS--------------------DQGPFDIVLHKLTGK 85 (343)
Q Consensus 47 ~~l~~~a-~~~Gi~~v~ID~~~~--------------------l~--------------------~q~~fDvilhK~t~~ 85 (343)
..+.++. ++.|+++++||.+.. +. +...+|+|+..+.+.
T Consensus 25 ~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~ 104 (377)
T 1ehi_A 25 QNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGN 104 (377)
T ss_dssp HHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCST
T ss_pred HHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccccccccccccCcchhhccccCCCEEEEecCCC
Confidence 3466777 888999999987641 10 123689999888542
Q ss_pred hHH-HHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCC---CchHHHHhcCCC
Q 019319 86 EWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS---SIPDVVLKAGLT 160 (343)
Q Consensus 86 ~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~---~~~~~l~~~~l~ 160 (343)
... ..++...+. -|++++ ++++++..++||..+.++|+++ +||+|++.++.+..+ ...+ + ...++
T Consensus 105 ~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~-~-~~~~g 174 (377)
T 1ehi_A 105 LGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNWSWDK-I-VAELG 174 (377)
T ss_dssp TTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGCCHHH-H-HHHHC
T ss_pred CCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchHHHHH-H-HHhcC
Confidence 110 134444433 488888 9999999999999999999975 899999999964321 1222 1 23478
Q ss_pred CcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCC-cEEEEEEECCE---EEEEEEecCCCCc
Q 019319 161 LPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVT 229 (343)
Q Consensus 161 fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g-~~~Kv~VIG~~---v~~~~R~slp~~~ 229 (343)
||+|+||..++ .|.++.++.++++|.+. +.++++||||+ | +++.|.|+|+. +....+.......
T Consensus 175 ~PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~~ 249 (377)
T 1ehi_A 175 NIVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPLVSEIGAHTVPNQG 249 (377)
T ss_dssp SCEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCEEEEEEEEECTTSS
T ss_pred CCEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcEEEeeEEEEecCCC
Confidence 99999998854 36789999999888652 56899999995 7 99999999983 4443322211000
Q ss_pred cccCccCCceeeeccccccc-c--cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEe
Q 019319 230 KQDLSTSAGVFRFPRVSCAA-A--SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDI 305 (343)
Q Consensus 230 ~~~~~~~~g~~~~~~~s~~~-~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDV 305 (343)
...++|+|......+ . ...+..+++.. .+.++++|.++.++||+. +++||++++. +| ++||+||
T Consensus 250 -----~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEi 317 (377)
T 1ehi_A 250 -----SGDGWYDYNNKFVDNSAVHFQIPAQLSPEV-----TKEVKQMALDAYKVLNLRGEARMDFLLDE-NN-VPYLGEP 317 (377)
T ss_dssp -----SSSCCCCHHHHTTCCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEE
T ss_pred -----CcCceeCHHhcccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEeC-CC-CEEEEEE
Confidence 012445554322211 0 01233332221 356899999999999997 8889999975 35 6899999
Q ss_pred cCCCCCccCC
Q 019319 306 NYFPGEVWEN 315 (343)
Q Consensus 306 N~fPg~~~gv 315 (343)
|..||+. +.
T Consensus 318 N~rpg~t-~~ 326 (377)
T 1ehi_A 318 NTLPGFT-NM 326 (377)
T ss_dssp ESSCCCS-TT
T ss_pred eCCCCCC-cc
Confidence 9999987 54
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.88 E-value=1.9e-21 Score=190.88 Aligned_cols=256 Identities=14% Similarity=0.178 Sum_probs=161.4
Q ss_pred EEEEEEecc-ccccccc---chHHHhhhhhcceEEEEeeCCCC------------------CCcC---------------
Q 019319 30 VVVGYALTS-KKTKSFL---QPKLEGLARNKGILFVAIDQNRP------------------LSDQ--------------- 72 (343)
Q Consensus 30 ~~VGy~l~~-kK~~~~~---~~~l~~~a~~~Gi~~v~ID~~~~------------------l~~q--------------- 72 (343)
.+|+..+=- +-.+..+ -....+++++.|+++++||.++. +...
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIY 117 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGC
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccccc
Confidence 457766622 2223332 33366677889999999998742 0010
Q ss_pred CCccEEEEccCchhHH-HHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCC-ccCCcEEEEecCCC-
Q 019319 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGK-VDVPRQLVIERDAS- 148 (343)
Q Consensus 73 ~~fDvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~-I~~P~~~~~~~~~~- 148 (343)
..+|+++.-+.+.... ..++.+.+. -|++++ .++.++..++||..+.++|++. + ||+|++..+.+...
T Consensus 118 ~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~~~~ 189 (383)
T 3k3p_A 118 EEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEGEPL 189 (383)
T ss_dssp CTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETTSCH
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCccch
Confidence 1579999887653110 234454433 478776 5689999999999999999986 8 99999999964321
Q ss_pred --CchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEE
Q 019319 149 --SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKV 219 (343)
Q Consensus 149 --~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~ 219 (343)
.+.+ ....++||+|+||..++ .|.++.++.++++|.+. +.++++||||+ |++|.|.|+|+....
T Consensus 190 ~~~~~~--~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~ 262 (383)
T 3k3p_A 190 ESKLAE--VEEKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVK 262 (383)
T ss_dssp HHHHHH--HHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCE
T ss_pred hHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCee
Confidence 1111 23468999999998853 37899999999988642 67899999995 999999999985211
Q ss_pred EEEecCCCCccccCccCCceeeeccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCC
Q 019319 220 VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGT 296 (343)
Q Consensus 220 ~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~ 296 (343)
+ +.+ .++....++|+|...+..+.. ..++.++++. .+.++++|.++.++||+. ++++|++++. +
T Consensus 263 ~---~~~----~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~ 329 (383)
T 3k3p_A 263 T---TLP----GEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVI-----VEKMRDYAATAFRTLGCCGLSRCDFFLTE-D 329 (383)
T ss_dssp E---CCC----EEEC-----------------CEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-T
T ss_pred E---Eee----EEEecCCCccchhhcccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEEC-C
Confidence 1 111 112223356666655432211 1233333222 457899999999999997 7789999985 3
Q ss_pred CCeEEEEEecCCCCCccCC
Q 019319 297 RDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 297 g~~~~ViDVN~fPg~~~gv 315 (343)
| ++||+|||..||++ ..
T Consensus 330 g-~~~vlEINtrPG~t-~~ 346 (383)
T 3k3p_A 330 G-KVYLNELNTMPGFT-QW 346 (383)
T ss_dssp C-CEEEEEEESSCCCC---
T ss_pred C-CEEEEEeeCCCCCC-cc
Confidence 5 69999999999987 43
No 16
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.87 E-value=3.3e-21 Score=188.48 Aligned_cols=214 Identities=12% Similarity=0.127 Sum_probs=140.7
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-C-
Q 019319 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-S- 149 (343)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~-~- 149 (343)
.+|+|+.-+.+.... ..++.+.+. -|++++ .++.++..++||..+.++|+++ |||+|++.++.+... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 589999887653111 245555543 578877 4688999999999999999976 899999999964332 1
Q ss_pred chHHHHhcCCCCc-EEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEE
Q 019319 150 IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 221 (343)
Q Consensus 150 ~~~~l~~~~l~fP-~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~ 221 (343)
..+. ....++|| +|+||..+ || |.+|.++.++++|.+. +.++++||||+ |++|.|.|+|+....
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~g-gs--s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~-- 241 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSL-GS--SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAPK-- 241 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSC-CS--GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSCE--
T ss_pred HHHH-HHHhcCCCeEEEEECCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCce--
Confidence 1111 23468999 99999885 33 7899999999988642 67899999996 999999999986210
Q ss_pred EecCCCCccccCccCCceeeecccccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 019319 222 RFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTR 297 (343)
Q Consensus 222 R~slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g 297 (343)
.++. +++....++|+|...+..+. ...++.++++. .+.++++|.++.++||+. ++++|++++. +|
T Consensus 242 --~~~~---~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg 310 (372)
T 3tqt_A 242 --ASLP---GEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESV-----TKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN 310 (372)
T ss_dssp --ECCC---EEEECC---------------CEEESCCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC
T ss_pred --Eeee---EEEecCCCccchhhcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC
Confidence 0111 11222235666665443221 11233333222 357899999999999998 7779999985 45
Q ss_pred CeEEEEEecCCCCCccCCc
Q 019319 298 DQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 298 ~~~~ViDVN~fPg~~~gv~ 316 (343)
++|++|||..|||+ ...
T Consensus 311 -~~~vlEINt~PG~t-~~S 327 (372)
T 3tqt_A 311 -KVLVNEINTIPGFT-NIS 327 (372)
T ss_dssp -CEEEEEEESSCCCS-TTC
T ss_pred -cEEEEEEECCCCcC-ccC
Confidence 69999999999998 543
No 17
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.87 E-value=9.2e-21 Score=181.25 Aligned_cols=207 Identities=15% Similarity=0.211 Sum_probs=146.0
Q ss_pred CCCccEEEEccCchhHH-HHHHHHHHhCCCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC
Q 019319 72 QGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS 149 (343)
Q Consensus 72 q~~fDvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~ 149 (343)
...+|+|+..+.+.... ..++...+. -|++++.| ++++..++||..+.++|++. ||++|++..+.+..+.
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 145 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGEPP 145 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTSCC
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECchhh
Confidence 34689999988542110 123333322 47888854 99999999999999999976 8999999999643321
Q ss_pred chHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCC-cEEEEEEECCE---EE
Q 019319 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGG-VLFKVYIVGEA---IK 218 (343)
Q Consensus 150 ~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g-~~~Kv~VIG~~---v~ 218 (343)
.. .++||+|+||..++| |.++.++.++++|.+. +.++++||||+ | +++.|.|+|++ +.
T Consensus 146 -----~~-~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~ 214 (322)
T 2fb9_A 146 -----VV-PFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEAS 214 (322)
T ss_dssp -----CC-CSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEE
T ss_pred -----hh-ccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEe
Confidence 11 689999999988543 6799999999888752 56899999995 8 99999999985 33
Q ss_pred EEEEecCCCCccccCccCCceeeeccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCC
Q 019319 219 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHG 295 (343)
Q Consensus 219 ~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~ 295 (343)
...+... ..++|+|......+.. ..+..+++.. .+.++++|.++.++||+ .++++|++++
T Consensus 215 ~~~ei~~----------~~~~~~~~~k~~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~-- 277 (322)
T 2fb9_A 215 PVGEVRY----------EAPFYDYETKYTPGRAELLIPAPLDPGT-----QETVQELALKAYKVLGVRGMARVDFFLA-- 277 (322)
T ss_dssp EEEEEEE----------ECCEEETTTEEECCEEEEESSCCCCTTH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEE--
T ss_pred eeEEEee----------CCCccCHHHcccCCCeEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEE--
Confidence 2222111 0124444432221111 1233332222 45789999999999999 8999999998
Q ss_pred CCCeEEEEEecCCCCCccCCc
Q 019319 296 TRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 296 ~g~~~~ViDVN~fPg~~~gv~ 316 (343)
+| ++||+|||..||+. ...
T Consensus 278 ~g-~~~vlEiN~rpg~t-~~s 296 (322)
T 2fb9_A 278 EG-ELYLNELNTIPGFT-PTS 296 (322)
T ss_dssp TT-EEEEEEEESSCCCS-SSC
T ss_pred CC-cEEEEEEECCCCCC-ccc
Confidence 35 79999999999998 664
No 18
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.87 E-value=2.5e-21 Score=190.20 Aligned_cols=275 Identities=14% Similarity=0.185 Sum_probs=174.9
Q ss_pred ceEEEEEEecc-cccccccc---hHHHhhhhhcceEEEEeeCCCCC----------------------------------
Q 019319 28 KLVVVGYALTS-KKTKSFLQ---PKLEGLARNKGILFVAIDQNRPL---------------------------------- 69 (343)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~---~~l~~~a~~~Gi~~v~ID~~~~l---------------------------------- 69 (343)
...+|+..+=- +-.+..+. ....++.++.|+++++||+++.-
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 100 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECTT
T ss_pred CCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeeccC
Confidence 45667766632 22233333 23666778889999999976420
Q ss_pred ------------CcCCCccEEEEccCchhHH-HHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCc
Q 019319 70 ------------SDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKV 135 (343)
Q Consensus 70 ------------~~q~~fDvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I 135 (343)
.....+|+|+.=+.+.... ..++...+. -|++++ .++.++..++||..+.++|++. ||
T Consensus 101 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GI 172 (386)
T 3e5n_A 101 AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRDA-------RL 172 (386)
T ss_dssp CSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHHT-------TC
T ss_pred ccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CC
Confidence 0123579888877653221 134555533 477776 6789999999999999999976 89
Q ss_pred cCCcEEEEecCC---CCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCC
Q 019319 136 DVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGG 205 (343)
Q Consensus 136 ~~P~~~~~~~~~---~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g 205 (343)
|+|++.++.+.. .+..+ ....++||+|+||..++| |.++.++.++++|.+. +.++++||||+ |
T Consensus 173 p~p~~~~~~~~~~~~~~~~~--~~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G 245 (386)
T 3e5n_A 173 AVAPFVCFDRHTAAHADVDT--LIAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA--G 245 (386)
T ss_dssp CBCCEEEEEHHHHTTCCHHH--HHHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--S
T ss_pred CCCCEEEEeCcccchhhHHH--HHHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--C
Confidence 999999996422 12222 123579999999988543 6789999999887652 56899999995 8
Q ss_pred cEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 019319 206 VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLG 282 (343)
Q Consensus 206 ~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG 282 (343)
+++.|.|+|+....+. ..+++....++|+|......+. ...++.++++. .+.++++|.++.++||
T Consensus 246 ~E~~v~vl~~~~~~~~-------~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg 313 (386)
T 3e5n_A 246 REIECAVLGNAVPHAS-------VCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQT-----QQRIQQIAVQAYQALG 313 (386)
T ss_dssp EEEEEEEECSSSCEEE-------EEEEECC-----------------CEESSCSSCHHH-----HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEeCCCceEE-------EeEEEEeCCcccchhcccCCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhC
Confidence 9999999998631110 0011111223555554432211 11233333222 3568999999999999
Q ss_pred Cc-EeEEEEEEeCCCCCeEEEEEecCCCCCccCCc-----------chHHHHHhHHhhhccc
Q 019319 283 LR-LFNLDIIREHGTRDQFYVIDINYFPGEVWENA-----------GVRAHIYRLPIKPDTE 332 (343)
Q Consensus 283 l~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~-----------~~~~~l~~~l~~~i~~ 332 (343)
+. ++++|++++. +| ++|++|||..||++ ... +|.+++.+++...+.+
T Consensus 314 ~~G~~~vDf~~~~-dg-~~~vlEiN~~PG~t-~~S~~p~~~~~~Gi~~~~li~~li~~a~~r 372 (386)
T 3e5n_A 314 CAGMARVDVFLCA-DG-RIVINEVNTLPGFT-RISVYPKLWQASGLDYRGLITRLIELALER 372 (386)
T ss_dssp CCSEEEEEEEECT-TC-CEEEEEEESSCCCS-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEEEC-CC-cEEEEEeECCCCCC-ccCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 97 7789999985 35 69999999999987 543 3545555555544443
No 19
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.87 E-value=4.7e-21 Score=186.47 Aligned_cols=226 Identities=15% Similarity=0.207 Sum_probs=153.3
Q ss_pred CCccEEEEccCchhHH-HHHHHHHHhCCCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCC---
Q 019319 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--- 147 (343)
Q Consensus 73 ~~fDvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~--- 147 (343)
..+|+|+.=+.+.... ..++.+.+. -|++++.| +.++..++||..+.++|++. |||+|++..+.+..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~ 168 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRHA 168 (364)
T ss_dssp CCCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGGG
T ss_pred CCCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccch
Confidence 3579998776542110 134555533 47887765 79999999999999999976 89999999996432
Q ss_pred CCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEE---
Q 019319 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAI--- 217 (343)
Q Consensus 148 ~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v--- 217 (343)
.++.+. ...++||+|+||..++ | |.++.++.++++|.+. +.++++||||+ |+++.|.|+|+..
T Consensus 169 ~~~~~~--~~~lg~PvvVKP~~gg-s--s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~ 241 (364)
T 3i12_A 169 FSFAEV--ESRLGLPLFVKPANQG-S--SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQA 241 (364)
T ss_dssp CCHHHH--HHHHCSSEEEEETTCC-T--TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEE
T ss_pred hhHHHH--HHhcCCCEEEEECCCC-C--CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCceE
Confidence 123222 2357899999998753 3 6789999999888642 67899999995 8999999998862
Q ss_pred EEEEEecCCCCccccCccCCceeeecccccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEe
Q 019319 218 KVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIRE 293 (343)
Q Consensus 218 ~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~ 293 (343)
....+.. ...++|+|......+. ...++.++++. .+.++++|.++.++||+. ++++|++++
T Consensus 242 ~~~~ei~----------~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~ 306 (364)
T 3i12_A 242 STCGEIV----------LNSEFYAYDTKYIDDNGAQVVVPAQIPSEV-----NDKIRAIAIQAYQTLGCAGMARVDVFLT 306 (364)
T ss_dssp EEEEEEE----------CCTTCC--TTTTSGGGGCEEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred eeeEEEe----------cCCCccCHHHcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 2221111 1124555554432211 11233333222 357899999999999994 778999998
Q ss_pred CCCCCeEEEEEecCCCCCccCCc-----------chHHHHHhHHhhhcc
Q 019319 294 HGTRDQFYVIDINYFPGEVWENA-----------GVRAHIYRLPIKPDT 331 (343)
Q Consensus 294 ~~~g~~~~ViDVN~fPg~~~gv~-----------~~~~~l~~~l~~~i~ 331 (343)
. +| ++|++|||..||++ ... +|.+++...+...+.
T Consensus 307 ~-~g-~~~vlEiN~~Pg~t-~~s~~p~~~~a~G~~~~~l~~~li~~a~~ 352 (364)
T 3i12_A 307 A-DN-EVVINEINTLPGFT-NISMYPKLWQASGLGYTDLISRLIELALE 352 (364)
T ss_dssp T-TC-CEEEEEEESSCCCS-TTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred c-CC-CEEEEEeeCCCCCC-CCCHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 5 35 69999999999998 653 344555555544443
No 20
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.86 E-value=7.8e-21 Score=182.85 Aligned_cols=206 Identities=17% Similarity=0.269 Sum_probs=140.8
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCch
Q 019319 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (343)
Q Consensus 74 ~fDvilhK~t~~~~-~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (343)
.+|+|+..+.+... -..++...+. .|++++ .++.++..++||..+.++|+++ +|++|++..+.+.. ...
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~ 160 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDD-RPV 160 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTC-CCC
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechh-hhh
Confidence 46777766643210 0123443322 478877 6799999999999999999976 89999999996432 222
Q ss_pred HHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCE----EEEE
Q 019319 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA----IKVV 220 (343)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g~~~Kv~VIG~~----v~~~ 220 (343)
...++||+|+||..++| |.+|.++.++++|.+ .+.++++||||+ |+++.|.|+|+. +...
T Consensus 161 ----~~~~~~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~ 231 (343)
T 1e4e_A 161 ----AATFTYPVFVKPARSGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEV 231 (343)
T ss_dssp ----GGGSCSCEEEEESSCCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCC
T ss_pred ----hhccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeee
Confidence 14589999999988543 678999999988765 257899999995 899999999874 1111
Q ss_pred EEecCCCCccccCccCCceeeeccccc----cccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEe
Q 019319 221 RRFSLPDVTKQDLSTSAGVFRFPRVSC----AAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIRE 293 (343)
Q Consensus 221 ~R~slp~~~~~~~~~~~g~~~~~~~s~----~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~ 293 (343)
.+... ..++|+|..... .+.. ..+..+++.. .+.++++|.++.++||+. ++++|++++
T Consensus 232 ~ei~~----------~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~ 296 (343)
T 1e4e_A 232 DQIRL----------QYGIFRIHQEVEPEKGSENAVITVPADLSAEE-----RGRIQETVKKIYKTLGCRGLARVDMFLQ 296 (343)
T ss_dssp EEEEE----------SSSCCCGGGSSSGGGCCSSEEECSSCSSCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred EEEee----------CCCccCHhhcccccCCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEe
Confidence 12111 112344433222 1110 1122222111 357899999999999994 889999997
Q ss_pred CCCCCeEEEEEecCCCCCccCC
Q 019319 294 HGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 294 ~~~g~~~~ViDVN~fPg~~~gv 315 (343)
. +| ++||+|||..||++ ..
T Consensus 297 ~-~g-~~~viEiN~rpg~t-~~ 315 (343)
T 1e4e_A 297 D-NG-RIVLNEVNTLPGFT-SY 315 (343)
T ss_dssp T-TC-CEEEEEEESSCCCS-TT
T ss_pred C-CC-CEEEEEeeCCCCCC-cc
Confidence 5 45 69999999999998 54
No 21
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.86 E-value=7.9e-21 Score=200.60 Aligned_cols=233 Identities=15% Similarity=0.200 Sum_probs=158.1
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcC---CCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSDQ---GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~q---~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~ 121 (343)
+.++++++|+++|++++.||++.++... ..+|.++. ..+.-.++..++..+.||..+.+
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~ 490 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKK 490 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHH
Confidence 4466999999999999999998766532 22333322 13355677889999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEe---ChhhHhc-------c
Q 019319 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------L 191 (343)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~---~~~~L~~-------l 191 (343)
+|++. |||+|++.++.+ .+++.+.+ ...++||+|+||..+ + .|.||.++. +.+++.+ .
T Consensus 491 lL~~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~G--~-~G~GV~iv~~~~s~eel~~a~~~~~~~ 558 (750)
T 3ln6_A 491 ILDEK-------HFPTPFGDEFTD-RKEALNYF-SQIQDKPIVVKPKST--N-FGLGISIFKTSANLASYEKAIDIAFTE 558 (750)
T ss_dssp HHHHT-------TCCCCCCCCEET-TTTHHHHH-HHSSSSCEEEEETTC--C-SSSSCEEESSCCCHHHHHHHHHHHHHH
T ss_pred HHHHC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCcEEEEeCCC--C-CCCCEEEEeCCCCHHHHHHHHHHHHhh
Confidence 99976 899999998863 33343322 246899999999774 3 477999998 7777654 2
Q ss_pred CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCcc--------C-C---c--e------------------
Q 019319 192 EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S-A---G--V------------------ 239 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~--------~-~---g--~------------------ 239 (343)
+.++++||||+ |++++|+|+||+++.+.++..+.+..++..+ + + | .
T Consensus 559 ~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~ 636 (750)
T 3ln6_A 559 DSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLE 636 (750)
T ss_dssp CSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHH
T ss_pred CCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHH
Confidence 67899999996 9999999999999987665544432111000 0 0 0 0
Q ss_pred ---eeecccccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeC-------CCCCeE
Q 019319 240 ---FRFPRVSCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREH-------GTRDQF 300 (343)
Q Consensus 240 ---~~~~~~s~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~-------~~g~~~ 300 (343)
++++++-..|. .+.++...+...++ .+.++++|.++++++|+.+.|||++.++ +.| .+
T Consensus 637 ~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i--~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~-~~ 713 (750)
T 3ln6_A 637 QQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTM--DPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKK-NA 713 (750)
T ss_dssp HTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTS--CHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTT-CC
T ss_pred HcCCCccccCCCCCEEEEeecccccCCCceeeccccC--CHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCC-Ce
Confidence 01111110000 00111100000112 3568999999999999999999999975 123 57
Q ss_pred EEEEecCCCCCc
Q 019319 301 YVIDINYFPGEV 312 (343)
Q Consensus 301 ~ViDVN~fPg~~ 312 (343)
+|||||..||+.
T Consensus 714 ~iiEvN~~pg~~ 725 (750)
T 3ln6_A 714 TCIELNFNPLMY 725 (750)
T ss_dssp EEEEEESSCCCH
T ss_pred EEEEEcCCcchh
Confidence 999999999986
No 22
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.85 E-value=1.7e-20 Score=183.41 Aligned_cols=214 Identities=16% Similarity=0.159 Sum_probs=145.5
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-hhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-c
Q 019319 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-I 150 (343)
Q Consensus 74 ~fDvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~-~ 150 (343)
.+|+|+.=+.+... -..++.+.+. -|++++.| +.++..++||..+.++|+++ +||+|++.++.+.... .
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccchh
Confidence 47888877743210 0133444432 37888876 89999999999999999976 8999999999643321 1
Q ss_pred hHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEe
Q 019319 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 223 (343)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~ 223 (343)
.. ....++||+|+||..++| |.++.++.++++|.+. +.++++||||+ |+++.|.|+|+.-..+ +.
T Consensus 181 ~~--~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~-~~ 252 (373)
T 3lwb_A 181 RQ--ECERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTL-EA 252 (373)
T ss_dssp HH--HHHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCE-EE
T ss_pred HH--HHHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCce-EE
Confidence 22 234589999999988543 7789999999888652 67899999996 9999999998851100 00
Q ss_pred cCCCCccccCccC--Cc----eeeeccccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeC
Q 019319 224 SLPDVTKQDLSTS--AG----VFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREH 294 (343)
Q Consensus 224 slp~~~~~~~~~~--~g----~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~ 294 (343)
+ +. +++... .+ +|+|......+.. ..++.++++. .+.++++|.++.++||+ .++++|++++.
T Consensus 253 ~-~~---~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 323 (373)
T 3lwb_A 253 S-TL---GEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQV-----AEAIRQLAIRAFAAIDCRGLARVDFFLTD 323 (373)
T ss_dssp C-CC---EEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEET
T ss_pred e-ee---eEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 1 10 011111 22 5555443322111 1233333222 35789999999999999 58899999986
Q ss_pred CCCCeEEEEEecCCCCCccCCc
Q 019319 295 GTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 295 ~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
+| + ||+|||..||++ ...
T Consensus 324 -dg-~-~vlEIN~~PG~t-~~S 341 (373)
T 3lwb_A 324 -DG-P-VINEINTMPGFT-TIS 341 (373)
T ss_dssp -TE-E-EEEEEESSCCCS-TTS
T ss_pred -CC-C-EEEEecCCCCCC-ccc
Confidence 45 6 999999999988 543
No 23
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.85 E-value=1.9e-20 Score=182.66 Aligned_cols=219 Identities=14% Similarity=0.153 Sum_probs=151.1
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-Cc
Q 019319 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SI 150 (343)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~-~~ 150 (343)
.+|+||.-+.+.... ..++...+. .|++++ .++.++..++||..+.++|++. |||+|++.++.+... ++
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHH
Confidence 578888776542111 134444433 488887 7799999999999999999986 899999999863321 22
Q ss_pred hHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhc-------cCCCeEEEecccCCC-cE---EEEEEECCEEEE
Q 019319 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG-VL---FKVYIVGEAIKV 219 (343)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~-------l~~p~v~QEFI~h~g-~~---~Kv~VIG~~v~~ 219 (343)
. ....++||+|+||..++ .|.++.++.++++|.+ .+.++++||||+ | ++ +.|.| ++++.+
T Consensus 179 ~---~~~~lg~PvvVKP~~g~---ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~ 249 (367)
T 2pvp_A 179 L---DLMNFNFPFIVKPSNAG---SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCF 249 (367)
T ss_dssp H---HHCCSCSCEEEEESSCC---TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEE
T ss_pred H---HHhccCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEE
Confidence 2 13568999999998854 3678999999988765 267899999995 7 89 77888 887443
Q ss_pred E-EEecCCCCccccCccCCceeeecccccccc--cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCC
Q 019319 220 V-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA--SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 295 (343)
Q Consensus 220 ~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~ 295 (343)
. .+.. + ..++|+|......+. ...++.++++. .+.++++|.++.++||+. ++++|++++
T Consensus 250 ~~~ei~-~---------~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~-- 312 (367)
T 2pvp_A 250 SYIEEP-N---------KQEFLDFKQKYLDFSRNKAPKASLSNAL-----EEQLKENFKKLYSDLFDGAIIRCDFFVI-- 312 (367)
T ss_dssp EEEEET-T---------TTEEECCCCSSCCSCCCSCCCCCCCHHH-----HHHHHHHHHHHHTTTSTTCCEEEEEEEE--
T ss_pred EEEEEe-c---------CCceEcccccccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHHHcCCCCEEEEEEEEE--
Confidence 3 2322 1 134566654433221 11222232221 356899999999999985 888999998
Q ss_pred CCCeEEEEEecCCCCCccC---CcchHHHHHhHHhh
Q 019319 296 TRDQFYVIDINYFPGEVWE---NAGVRAHIYRLPIK 328 (343)
Q Consensus 296 ~g~~~~ViDVN~fPg~~~g---v~~~~~~l~~~l~~ 328 (343)
+| ++||+|||..||++ + +|+|.+++.+.+..
T Consensus 313 ~g-~~~vlEiN~rpg~t-~~s~~p~~~~l~~~li~~ 346 (367)
T 2pvp_A 313 EN-EVYLNEINPIPGSL-ANYLFDDFKTTLENLAQS 346 (367)
T ss_dssp TT-EEEEEEEESSCGGG-GGGGSSSHHHHHHHHHHH
T ss_pred CC-eEEEEEEeCCCCCC-cccccCCHHHHHHHHHhC
Confidence 34 79999999999986 4 44555555444433
No 24
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.83 E-value=1.1e-19 Score=191.89 Aligned_cols=231 Identities=14% Similarity=0.152 Sum_probs=156.7
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCc-eeeChhhHHHHhcCHHHHHHH
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEV-TVLDPPYAIQHLHNRQSMLQC 122 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v-~ViDp~~ai~~~~dR~~~~~~ 122 (343)
.+.+.++++|+++||+++.|+++.++...|--|.+- .+. ++. ..-++..++..+.||..+.++
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~-~ig---------------~~~~t~~~s~~aa~~~~DK~~tk~l 496 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIE-YVK---------------NGNMTSHDSYISPLIMENKVVTKKV 496 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEEE-EEE---------------TTTBCSSSBSHHHHHHHHSHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEECCCHHHHHhcccccce-eec---------------cCccCCCCHHHHHHHhcCHHHHHHH
Confidence 345679999999999999999988765433222211 110 233 345778899999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEE----eChhhHhc-------c
Q 019319 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKK-------L 191 (343)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv----~~~~~L~~-------l 191 (343)
|++. |||+|++.++.+ .+++.+. ....++||+|+||..++ .|.||.++ .+.+++.+ .
T Consensus 497 L~~~-------GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 497 LQKA-------GFNVPQSVEFTS-LEKAVAS-YALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp HHHH-------TCCCCCEEEESC-HHHHHHG-GGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHC-------CcCCCCEEEECC-HHHHHHH-HHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 9986 899999998852 2222111 11468999999998853 47799998 78887764 2
Q ss_pred CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCc-------------------------------------
Q 019319 192 EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS------------------------------------- 234 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~------------------------------------- 234 (343)
+..+++|||| .|++++|+|+||+++.+.++..+++..++..
T Consensus 565 ~~~vlVEefI--~G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~ 642 (757)
T 3ln7_A 565 DKEVMVEDYL--VGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLK 642 (757)
T ss_dssp CSSEEEEECC--CSEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHH
T ss_pred CCcEEEEEcC--CCcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHH
Confidence 6789999999 4899999999999998866654443211100
Q ss_pred ---------cCCcee----eecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC------
Q 019319 235 ---------TSAGVF----RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------ 295 (343)
Q Consensus 235 ---------~~~g~~----~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~------ 295 (343)
...|.. .-.|.+.+|. +.+. ..+ .++.++++|.++++++|+.+.|||++.++-
T Consensus 643 ~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~-~~dv-----td~--i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~ 714 (757)
T 3ln7_A 643 EQGLTIDSIPAKDQLVQLRANSNISTGGD-SIDM-----TDE--MHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATP 714 (757)
T ss_dssp HHTCCSSSCCCSSCEEECCSSCCGGGTCC-EEEC-----TTT--SCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCS
T ss_pred HcCCCccccCCCCCEEEeecccccccCcc-ceec-----ccc--CCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccc
Confidence 001110 0011221111 0000 011 245689999999999999999999999741
Q ss_pred CCCeEEEEEecCCCCCc
Q 019319 296 TRDQFYVIDINYFPGEV 312 (343)
Q Consensus 296 ~g~~~~ViDVN~fPg~~ 312 (343)
.+..+.|||||..||+.
T Consensus 715 ~~~~~~iiEvN~~P~~~ 731 (757)
T 3ln7_A 715 NLTSWGVIEANFNPMMM 731 (757)
T ss_dssp STTTCEEEEEESSCCHH
T ss_pred cCCCeEEEEEcCCcchh
Confidence 11247999999999977
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.79 E-value=1.8e-18 Score=162.24 Aligned_cols=238 Identities=12% Similarity=0.086 Sum_probs=155.5
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCC-C-----------------------------cCCCccEEEEccCch---hH--H
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPL-S-----------------------------DQGPFDIVLHKLTGK---EW--R 88 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l-~-----------------------------~q~~fDvilhK~t~~---~~--~ 88 (343)
.....+.++++++|++++.+|++..- . ....+|+|+.+.... .+ .
T Consensus 19 ~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~ 98 (316)
T 1gsa_A 19 DSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYA 98 (316)
T ss_dssp CHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHH
T ss_pred ChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHH
Confidence 44466888999999999999875311 0 011478999887542 11 1
Q ss_pred HHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecC
Q 019319 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (343)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (343)
..+.+..+. .|++++|+++++..+.||+.+.++|+ ++|++..+. +.+++.+.+. .++ |+|+||.
T Consensus 99 ~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~--~~~-p~vvKP~ 162 (316)
T 1gsa_A 99 TYILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWE--KHS-DIILKPL 162 (316)
T ss_dssp HHHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHH--HHS-SEEEECS
T ss_pred HHHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHH--HcC-CEEEEEC
Confidence 223333323 47889999999999999999877543 799999884 2222322222 245 9999998
Q ss_pred CCCCCCCceeeEEEe-ChhhHhc-------c-CCCeEEEecccCC-CcEEEEEEECCEEEE-E-EEecCCCCccccCccC
Q 019319 169 VADGSAKSHELSLAY-DQYSLKK-------L-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV-V-RRFSLPDVTKQDLSTS 236 (343)
Q Consensus 169 ~a~GS~~sh~m~iv~-~~~~L~~-------l-~~p~v~QEFI~h~-g~~~Kv~VIG~~v~~-~-~R~slp~~~~~~~~~~ 236 (343)
.+ + +|.++.++. ++++|.. . ..++++||||+.. +.+++++++|+++.. . .|.+.. ++|..+
T Consensus 163 ~g--~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~~ 235 (316)
T 1gsa_A 163 DG--M-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRGN 235 (316)
T ss_dssp SC--C-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCCC
T ss_pred CC--C-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCceeE
Confidence 84 3 578899998 7766543 2 3689999999852 799999999999875 3 444321 122211
Q ss_pred CceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHH---hCCcEeEEEEEEeCCCCCeEEEEEecC-C-CCC
Q 019319 237 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ---LGLRLFNLDIIREHGTRDQFYVIDINY-F-PGE 311 (343)
Q Consensus 237 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~---lGl~l~GvDvi~~~~~g~~~~ViDVN~-f-Pg~ 311 (343)
++. .+. ..+. ++ .+.++++|.++.++ +|+.++|+|++ | . ||+|||. + ||+
T Consensus 236 -----~~~---gg~-~~~~-------~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~ 290 (316)
T 1gsa_A 236 -----LAA---GGR-GEPR-------PL--TESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTCI 290 (316)
T ss_dssp -----GGG---TCE-EEEE-------EC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCCH
T ss_pred -----Ecc---CCc-cccC-------CC--CHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcch
Confidence 111 110 1111 11 24578899988877 59999999998 4 3 7999999 5 587
Q ss_pred ccCCc-----chHHHHHhHHhhhc
Q 019319 312 VWENA-----GVRAHIYRLPIKPD 330 (343)
Q Consensus 312 ~~gv~-----~~~~~l~~~l~~~i 330 (343)
. .+. ++.+.+.+++...+
T Consensus 291 ~-~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 291 R-EIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp H-HHHHHSSCCHHHHHHHHHHHHT
T ss_pred H-HHHHhhCcCHHHHHHHHHHHHh
Confidence 6 442 35455555555444
No 26
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.75 E-value=1.7e-16 Score=154.13 Aligned_cols=226 Identities=13% Similarity=0.141 Sum_probs=149.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC--CcC-------------------CCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPL--SDQ-------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l--~~q-------------------~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi 104 (343)
-..+..+++++|++++.+|.+..- ... ..+|+|+.-..+ .....+. +.++ -|+++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~-~~~~~~~-~l~~-~gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEH-IDVQTLK-KLYN-EGYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSC-SCHHHHH-HHHH-TTCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccC-CCHHHHH-HHHH-CCCeEC
Confidence 456778889999999999985321 110 135666642221 1122223 3322 477788
Q ss_pred ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (343)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~ 184 (343)
++++++..+.||..+.+.|+++ +||+|++..+++. + + ....++||+|+||..++ -+|.++.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~---~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~ 154 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDL-E---S--DVREFGFPVVQKARKGG--YDGRGVFIIKN 154 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSH-H---H--HHHTTCSSEEEEESCCC-------EEEECS
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCH-H---H--HHHhcCCCEEEEecCCC--CCCCCeEEECC
Confidence 9999999999999999999976 8999999988521 1 1 23468999999998843 13679999999
Q ss_pred hhhHhcc-CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCccccCccCCceeeecccccccccCCCCCCCc
Q 019319 185 QYSLKKL-EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (343)
Q Consensus 185 ~~~L~~l-~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (343)
+++|.+. +.++++||||+. |+++.|.++++ ++.+. ..... +. ...|.++.. ..+..+++
T Consensus 155 ~~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~~--------~~p~~l~~ 218 (380)
T 3ax6_A 155 EKDLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDTV--------IAPARIEE 218 (380)
T ss_dssp GGGGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CEE--------EESCSSCH
T ss_pred HHHHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEEE--------ECCCCCCH
Confidence 9998764 478999999963 89999999975 44432 11111 00 011211110 01222222
Q ss_pred cccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 260 CVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.. .+.++++|.++.++||+ .++++|++++. +| ++||+|||.-||..
T Consensus 219 ~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~ 265 (380)
T 3ax6_A 219 KY-----SKIAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNS 265 (380)
T ss_dssp HH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGG
T ss_pred HH-----HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCC
Confidence 11 35679999999999999 48889999985 45 69999999999974
No 27
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.74 E-value=1.1e-16 Score=156.45 Aligned_cols=238 Identities=13% Similarity=0.127 Sum_probs=156.6
Q ss_pred EEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCC---------------------CccEEEEccCchhHH
Q 019319 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG---------------------PFDIVLHKLTGKEWR 88 (343)
Q Consensus 30 ~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~---------------------~fDvilhK~t~~~~~ 88 (343)
.+||..-.-. +...+.++|++.|++++.+|.+..-.... ..|+|..-... ...
T Consensus 15 k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~-~~~ 88 (389)
T 3q2o_A 15 KTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFEN-IDY 88 (389)
T ss_dssp SEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCC-CCH
T ss_pred CEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecccc-ccH
Confidence 3555555442 46678889999999999999864221111 22333211100 111
Q ss_pred HHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecC
Q 019319 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (343)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (343)
..++...+. ++ +..+++++..+.||..+.+.|+++ +|++|++..+.+ .+++.+. ...++||+|+||.
T Consensus 89 ~~~~~l~~~--g~-~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~ 155 (389)
T 3q2o_A 89 RCLQWLEKH--AY-LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEA--IAELSYPSVLKTT 155 (389)
T ss_dssp HHHHHHHHH--SC-CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HHHHCSSEEEEES
T ss_pred HHHHHHHhh--Cc-cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHH--HHhcCCCEEEEeC
Confidence 223333333 33 678999999999999999999976 899999998853 2223222 2357899999998
Q ss_pred CCCCCCCceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccccCccCCcee
Q 019319 169 VADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 169 ~a~GS~~sh~m~iv~~~~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~ 240 (343)
.+.| .+.+|.++.++++|.+. +.++++||||+ +++++.|.++++ ++.+. |-.+ .....|.+
T Consensus 156 ~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~-----~~~e---~~~~~g~~ 224 (389)
T 3q2o_A 156 TGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF-----PVAE---NIHVNNIL 224 (389)
T ss_dssp SCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC-----CCEE---EEEETTEE
T ss_pred CCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe-----cCee---eEEcCCce
Confidence 8532 36899999999998764 57999999996 359999999965 33321 1100 00011222
Q ss_pred eecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 241 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
... ..+..+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.
T Consensus 225 ~~~--------~~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~s 282 (389)
T 3q2o_A 225 HES--------IVPARITEEL-----SQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHNS 282 (389)
T ss_dssp EEE--------EESCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGG
T ss_pred EEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCCc
Confidence 110 0122232222 356899999999999996 8889999975 35 69999999999865
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.74 E-value=3.4e-16 Score=154.33 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=142.9
Q ss_pred hHHHhhhhhcceEEEEeeCCCC-CCcC-CCccEEEE-ccC-ch-hHHHHHH----------------------HHHHhCC
Q 019319 47 PKLEGLARNKGILFVAIDQNRP-LSDQ-GPFDIVLH-KLT-GK-EWRQILE----------------------EYRQTHP 99 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~-l~~q-~~fDvilh-K~t-~~-~~~~~l~----------------------~~~~~~p 99 (343)
+.++++|+++|++++.+|.... ...+ ...|-.++ -.+ +. ...+.+. ..+.+.-
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~l 97 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEAL 97 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHc
Confidence 3478899999999999976532 2211 12232221 111 11 1111111 2222223
Q ss_pred CceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceee
Q 019319 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (343)
Q Consensus 100 ~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m 179 (343)
|++ =.++++++.++||..|.+.|+++ +||+|++..+++. +++ ....++||+|+||..+ + +|.+|
T Consensus 98 glp-g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~----~~~~~g~P~vvKp~~g--~-gs~Gv 161 (425)
T 3vot_A 98 NLP-GLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-ADL----ENRKLSYPLVVKPVNG--F-SSQGV 161 (425)
T ss_dssp TCS-SCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-GGG----TTCCCCSSEEEEESCC--------C
T ss_pred CCC-CCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-HHH----HHhhcCCcEEEEECCC--C-CCCCc
Confidence 433 25789999999999999999976 8999999998532 222 2357999999999874 3 58899
Q ss_pred EEEeChhhHhcc------------------CCCeEEEecccCCCcEEEE--EEECCEEEEE--EEecCCCCccccCccCC
Q 019319 180 SLAYDQYSLKKL------------------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVV--RRFSLPDVTKQDLSTSA 237 (343)
Q Consensus 180 ~iv~~~~~L~~l------------------~~p~v~QEFI~h~g~~~Kv--~VIG~~v~~~--~R~slp~~~~~~~~~~~ 237 (343)
.++.++++|.+. +.++++||||+ |..|-| ++.++++.+. .++.... +.. ...
T Consensus 162 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~---~~~-~~~ 235 (425)
T 3vot_A 162 VRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK---GPF-FEE 235 (425)
T ss_dssp EEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC---CSB-CCC
T ss_pred eEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC---CCc-ccc
Confidence 999999887642 46799999995 777765 4456665432 2222110 000 000
Q ss_pred ceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
+.+ ..++.+++.. ...+.++|.++.++||+ .++.+|++++. +| ++|++|||.=||-. ++
T Consensus 236 ~~~-----------~~Pa~l~~~~-----~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~-~~ 296 (425)
T 3vot_A 236 GVY-----------IAPAQLKEET-----RLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGS-GV 296 (425)
T ss_dssp CEE-----------EESCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGG-GH
T ss_pred ceE-----------eecccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCC-Cc
Confidence 000 0122232222 35678999999999998 48889999985 45 68999999999866 65
Q ss_pred cc
Q 019319 316 AG 317 (343)
Q Consensus 316 ~~ 317 (343)
+.
T Consensus 297 ~~ 298 (425)
T 3vot_A 297 SH 298 (425)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 29
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.72 E-value=5e-16 Score=150.28 Aligned_cols=226 Identities=12% Similarity=0.115 Sum_probs=150.1
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC--CcC------------------CCccEEEEccCchhHHHHHHHHHHhCCCceeeC
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPL--SDQ------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l--~~q------------------~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViD 105 (343)
...+..++++.|++++.+|.+..- ... ..+|+|+.-.... ....++.+.+. | ++.+
T Consensus 11 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~~l~~~--g-~~g~ 86 (369)
T 3aw8_A 11 GRMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAARRLEGR--L-PLYP 86 (369)
T ss_dssp HHHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHHHHHHH--S-CBSS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHHHHHHc--C-CcCC
Confidence 345777888899998888876321 110 2568877544332 22333333333 4 7889
Q ss_pred hhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeCh
Q 019319 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (343)
Q Consensus 106 p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~ 185 (343)
+++++..+.||..+.++|+++ +||+|++..+.+ .+++.+ ....++||+|+||..++ -+|.++.++.++
T Consensus 87 ~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~--~~~~~g~P~vvKp~~~~--~~g~Gv~~v~~~ 154 (369)
T 3aw8_A 87 PAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEE--GLKRVGLPALLKTRRGG--YDGKGQALVRTE 154 (369)
T ss_dssp CHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHH--HHTTTCSSEEEEECCC--------EEEECSH
T ss_pred CHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHH--HHHHcCCCEEEEEcCCC--CCcceEEEECCH
Confidence 999999999999999999986 899999998852 222222 13468999999998854 036789999999
Q ss_pred hhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccccCccCCceeeecccccccccCCCCC-
Q 019319 186 YSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD- 256 (343)
Q Consensus 186 ~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~- 256 (343)
++|.+. ..++++||||+. |+++.|.++++ ++.+. +-.. .+. ..+.++.+ ..+..
T Consensus 155 ~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~-----~~~~--~~~-~~~~~~~~--------~~p~~~ 217 (369)
T 3aw8_A 155 EEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFY-----PLVE--NRH-WGGILRLS--------LAPAPG 217 (369)
T ss_dssp HHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEEC-----CCEE--EEE-ETTEEEEE--------EESCTT
T ss_pred HHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEE-----CCee--eee-eCCEEEEE--------ECCCCC
Confidence 888753 468999999963 89999999974 44432 1000 000 11222210 01221
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 257 LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 257 ~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+++.. .+.++++|.++.++||+. ++++|++.+. | ++|++|||.-||..
T Consensus 218 l~~~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~ 266 (369)
T 3aw8_A 218 ASEAL-----QKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNS 266 (369)
T ss_dssp CCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGG
T ss_pred CCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCc
Confidence 22211 356799999999999996 7789999975 4 69999999999975
No 30
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.71 E-value=9e-16 Score=149.69 Aligned_cols=236 Identities=15% Similarity=0.162 Sum_probs=155.6
Q ss_pred eEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCc-C--------------------CCccEEEEccCchhH
Q 019319 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD-Q--------------------GPFDIVLHKLTGKEW 87 (343)
Q Consensus 29 ~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~-q--------------------~~fDvilhK~t~~~~ 87 (343)
..+||..-.- ..-..+..+|++.|++++.+|.+..-.. + ...|+|..-... ..
T Consensus 12 ~~~IlIlG~G-----~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~-~~ 85 (377)
T 3orq_A 12 GATIGIIGGG-----QLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFEN-IS 85 (377)
T ss_dssp TCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTT-SC
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccc-cC
Confidence 3455555443 2345688899999999999998642111 0 023544322111 11
Q ss_pred HHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEec
Q 019319 88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (343)
Q Consensus 88 ~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (343)
...+....+. . .+..++++++.+.||..+.+.|+++ +||+|++..+.+ .+++.+. ...++||+|+||
T Consensus 86 ~~~l~~l~~~-~--~v~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp 152 (377)
T 3orq_A 86 AQQLKLLCEK-Y--NIPQGYQAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKA--IETLGYPFIVKT 152 (377)
T ss_dssp HHHHHHHHHH-S--CCTTTTHHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHH--HHHTCSSEEEEE
T ss_pred HHHHHHHhhh-c--CCCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHH--HHHcCCCEEEEe
Confidence 2233333333 2 4558899999999999999999976 899999998853 3333332 235899999999
Q ss_pred CCCCCCCCceeeEEEeChhhHhcc-----CCCeEEEecccCCC-cEEEEEEE-C--CEEEEEEEecCCCCccccCccCCc
Q 019319 168 LVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG-VLFKVYIV-G--EAIKVVRRFSLPDVTKQDLSTSAG 238 (343)
Q Consensus 168 ~~a~GS~~sh~m~iv~~~~~L~~l-----~~p~v~QEFI~h~g-~~~Kv~VI-G--~~v~~~~R~slp~~~~~~~~~~~g 238 (343)
..+ || +|+++.++.++++|.+. +.++++||||+ | +++.|.++ + +++.+. |-.+ .....|
T Consensus 153 ~~g-g~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~e---~~~~~g 220 (377)
T 3orq_A 153 RFG-GY-DGKGQVLINNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQE---NEHRNQ 220 (377)
T ss_dssp SSS-CC-TTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCEE---EEEETT
T ss_pred CCC-CC-CCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCEe---EEEECC
Confidence 874 33 57899999999887653 57899999995 6 89999999 3 233322 1100 000112
Q ss_pred eeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.+... ..+..++ +.+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.
T Consensus 221 ~~~~~--------~~Pa~l~-------~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g-~~~v~EinpR~~~s 278 (377)
T 3orq_A 221 ILFKT--------IVPARID-------KTAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NN-QLYVNEIAPRPHNS 278 (377)
T ss_dssp EEEEE--------EESCSSC-------CHHHHHHHHHHHHTTSCCCEEEEEEEEEET-TC-CEEEEEEESSCCGG
T ss_pred EEEEE--------ECCCCCC-------HHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEeeCCcCCC
Confidence 22110 0122221 1467899999999999997 8899999985 34 69999999999944
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.71 E-value=2.1e-16 Score=154.44 Aligned_cols=232 Identities=17% Similarity=0.152 Sum_probs=149.7
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC---------------C---------cCCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPL---------------S---------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l---------------~---------~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v 101 (343)
..+++++|++.|+..+.+|...+- . +...+|+|+.-..+ .....+.+..++ -|+
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~-~~~~~~a~~~~~-~gl 96 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLD-TGIVSLARICDK-ENL 96 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCS-TTHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcc-hhHHHHHHHHHH-cCc
Confidence 456889999999999999863211 0 12357888753222 222233333322 255
Q ss_pred eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
+-++++++..+.||..+.++|+++ +||+|++..+. +.+++.+ ....++||+|+||..+. +|.+|.+
T Consensus 97 -~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~g~---gg~Gv~~ 162 (403)
T 4dim_A 97 -VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKN--ALENLKLPVIVKATDLQ---GSKGIYI 162 (403)
T ss_dssp -SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHH--HHHTSCSSEEEECSCC--------CEE
T ss_pred -CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHH--HHhcCCCCEEEEECCCC---CCCCEEE
Confidence 468899999999999999999987 89999998774 2222222 23468999999998853 5789999
Q ss_pred EeChhhHhcc---------CCCeEEEecccCCCcEEEE--EEECCEEEEEEEecCCCCccccCccCCceeeecccccccc
Q 019319 182 AYDQYSLKKL---------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 250 (343)
Q Consensus 182 v~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv--~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~ 250 (343)
+.++++|.+. +.++++||||+ |..|-| ++.++++.+..... +.... +.+. .. .+.
T Consensus 163 v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~~~------~~~~---~~-~~~ 228 (403)
T 4dim_A 163 AKKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DETYM------SHTA---VP-VGH 228 (403)
T ss_dssp ESSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEEEE------SSSE---EE-EEE
T ss_pred ECCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--ceecc------CCCC---cc-eeE
Confidence 9999988653 46899999996 666654 55678776542111 00000 0000 00 000
Q ss_pred cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCCCccCCcc
Q 019319 251 SADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGEVWENAG 317 (343)
Q Consensus 251 ~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~ 317 (343)
..+..+++.. .+.+.++|.++.++||+. .+++|++.++ | ++|++|||.-||-. +++.
T Consensus 229 -~~p~~l~~~~-----~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~~-~~~~ 287 (403)
T 4dim_A 229 -YVPLDVKDDI-----IEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-EVYIIELTGRVGAN-CLPE 287 (403)
T ss_dssp -EESCCSCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-EEEEEEEESSCCST-THHH
T ss_pred -EeCCCCCHHH-----HHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCCC-cHHH
Confidence 0122222221 356789999999999997 5789999973 3 69999999999987 6654
No 32
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.71 E-value=4.4e-16 Score=154.30 Aligned_cols=239 Identities=14% Similarity=0.124 Sum_probs=157.6
Q ss_pred ceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCC-----c---CC-------------CccEEEEccCchh
Q 019319 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS-----D---QG-------------PFDIVLHKLTGKE 86 (343)
Q Consensus 28 ~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~-----~---q~-------------~fDvilhK~t~~~ 86 (343)
+..+||..-.- .....++.+|+++|++++.+|.+..-. + .. ..|+|+.-... .
T Consensus 34 ~~~~IlIlG~G-----~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e~-~ 107 (419)
T 4e4t_A 34 PGAWLGMVGGG-----QLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFEN-V 107 (419)
T ss_dssp TTCEEEEECCS-----HHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCTT-C
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccCc-C
Confidence 34456655543 345678899999999999999753110 0 01 35777632211 1
Q ss_pred HHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcC----CCCc
Q 019319 87 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG----LTLP 162 (343)
Q Consensus 87 ~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~----l~fP 162 (343)
....+. +.++. .++..++++++.+.||..+.++|+++ +||+|++..+++ .+++.+. ... + ||
T Consensus 108 ~~~~~~-~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~-~~e~~~~--~~~~~~~~-~P 173 (419)
T 4e4t_A 108 PAASLD-FLART--TFVAPAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIES-AAALAAL--DDAALDAV-LP 173 (419)
T ss_dssp CHHHHH-HHHTT--SEESSCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECS-HHHHHTS--CHHHHHTT-CS
T ss_pred CHHHHH-HHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHH--HHhhcccc-CC
Confidence 223333 33343 47899999999999999999999976 899999998852 2111111 123 7 99
Q ss_pred EEEecCCCCCCCCceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCccccCc
Q 019319 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLS 234 (343)
Q Consensus 163 ~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~ 234 (343)
+|+||.. .|+ .+.++.++.++++|.+. +.++++||||+. ++.+.|.++++ ++.+. |-.. ..
T Consensus 174 ~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~~-----~~~e--~~- 242 (419)
T 4e4t_A 174 GILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAAF-----PLAQ--NV- 242 (419)
T ss_dssp EEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEEC-----CCEE--EE-
T ss_pred EEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEEE-----eCeE--EE-
Confidence 9999974 244 57899999999988753 578999999963 78999999954 23221 1100 00
Q ss_pred cCCceeeecccccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 235 TSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 235 ~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
...|.+... ..+.. +++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.
T Consensus 243 ~~~g~~~~~--------~~Pa~~l~~~~-----~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~~s 307 (419)
T 4e4t_A 243 HHNGILALT--------IVPAPAADTAR-----VEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPHNS 307 (419)
T ss_dssp EETTEEEEE--------EESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCCGG
T ss_pred eeCCeEEEE--------EcCCCCCCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCCCC
Confidence 011222110 01222 22222 356789999999999996 7889999985 35 69999999999965
No 33
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.71 E-value=7.9e-17 Score=158.67 Aligned_cols=245 Identities=14% Similarity=0.124 Sum_probs=157.4
Q ss_pred EEEEEEecccccccccchHHHhhhhhcceEEEEeeCCC--CCCcCC-CccEEEEccCchhHH------------------
Q 019319 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR--PLSDQG-PFDIVLHKLTGKEWR------------------ 88 (343)
Q Consensus 30 ~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~--~l~~q~-~fDvilhK~t~~~~~------------------ 88 (343)
.+||..-.- .+-..+..+|+++|++++.+| .. |..... .+..+.....+....
T Consensus 25 ~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~ 98 (403)
T 3k5i_A 25 RKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVD 98 (403)
T ss_dssp CEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSC
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCC
Confidence 455555543 355668889999999999999 43 111111 112222222221110
Q ss_pred HHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEec-CCCCchHHHHhcCCCCcEEEec
Q 019319 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKP 167 (343)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~-~~~~~~~~l~~~~l~fP~VvKp 167 (343)
..+.+..++ ++++..++++++.+.||..+.+.|+++ +||+|++..+.. +.+++.+. ...++||+|+||
T Consensus 99 ~~~l~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~--~~~~g~P~VvKp 167 (403)
T 3k5i_A 99 TYALEEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKV--GEQLGYPLMLKS 167 (403)
T ss_dssp HHHHHHHTT--TSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHH--HHHHCSSEEEEE
T ss_pred HHHHHHHHc--CCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHH--HHHhCCCEEEEe
Confidence 111122323 788999999999999999999999976 899999999852 22222221 235789999999
Q ss_pred CCCCCCCCceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeee
Q 019319 168 LVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRF 242 (343)
Q Consensus 168 ~~a~GS~~sh~m~iv~~~~~L~~l-----~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~ 242 (343)
..++ + .|.++.++.++++|.+. +.++++||||+ .|+++.|.++++.--+. ..|... .....|.+..
T Consensus 168 ~~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~---~~p~~~---~~~~~g~~~~ 238 (403)
T 3k5i_A 168 KTMA-Y-DGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVL---SYPTVE---TVQEDSICKL 238 (403)
T ss_dssp SSSC-C-TTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEE---ECCCEE---EEEETTEEEE
T ss_pred CCCC-c-CCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEE---EeCCee---eEEeCCEEEE
Confidence 8742 2 46799999999887653 56899999995 37999999997631110 112110 0001122211
Q ss_pred cccccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCccCCc
Q 019319 243 PRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEVWENA 316 (343)
Q Consensus 243 ~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~ 316 (343)
. ..+.. +++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-. |..
T Consensus 239 ~--------~~Pa~~l~~~~-----~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~s-g~~ 298 (403)
T 3k5i_A 239 V--------YAPARNVSDAI-----NQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNS-GHY 298 (403)
T ss_dssp E--------EESCSSCCHHH-----HHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGG-GTT
T ss_pred E--------EeCCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCC-Cce
Confidence 1 01222 32222 356789999999999996 7789999985 35 69999999999976 543
No 34
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.69 E-value=1.5e-15 Score=146.63 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=140.9
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcC----------------------CCccEEEEccCchhHHHHHHHHHHhCCCcee
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSDQ----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~q----------------------~~fDvilhK~t~~~~~~~l~~~~~~~p~v~V 103 (343)
...+..+|++.|++++.+|.+..-... ..+|+|+.-...... ..+.....+..++++
T Consensus 13 g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (363)
T 4ffl_A 13 GFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLAC-IEFLNSIKEKFSCPV 91 (363)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHH-HHHHHHHGGGCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhH-HHHHHHHHHHCCCcc
Confidence 345778999999999999986522111 145666544433211 223333445567888
Q ss_pred eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEe
Q 019319 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (343)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~ 183 (343)
..++++++.+.||..+.+.|+++ +||+|.+ ..++||+|+||..+. +|.+|.++.
T Consensus 92 g~~~~a~~~~~dK~~~k~~l~~~-------gip~~~~----------------~~ig~P~vvKp~~g~---g~~gv~~v~ 145 (363)
T 4ffl_A 92 LFDFEAYRISRDKKKSKDYFKSI-------GVPTPQD----------------RPSKPPYFVKPPCES---SSVGARIIY 145 (363)
T ss_dssp CCCHHHHHHHTSHHHHHHHHHHT-------TCCCCCB----------------SCSSSCEEEECSSCC---TTTTCEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHhc-------CCCCCCc----------------eecCCCEEEEECCCC---CCcCeEEec
Confidence 89999999999999999999986 8888864 137899999998743 578999999
Q ss_pred ChhhHhccCCCeEEEecccCCCcEEEEEEECCE--EEEE--EEecCCCCccccCccCCceeeecccccccccCCCCCCCc
Q 019319 184 DQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA--IKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (343)
Q Consensus 184 ~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~--v~~~--~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (343)
+.+++......+++|||| .|+.+-|.++++. ..+. .+...++ . ..+ .
T Consensus 146 ~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~~~~~~~~~~~---------~-------~~~-------~---- 196 (363)
T 4ffl_A 146 DDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAVVKETLVHIDE---------T-------YDC-------H---- 196 (363)
T ss_dssp ------CCCTTCEEEECC--CSEEEEEEEEEESSCEEECCCEEEEECT---------T-------SCE-------E----
T ss_pred cHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEEEEEEEeccCC---------c-------ccc-------e----
Confidence 999999999999999999 5899988888653 2211 1110000 0 000 0
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecC-CCCCc
Q 019319 260 CVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINY-FPGEV 312 (343)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~-fPg~~ 312 (343)
...+.+..+.++++|.++.++||+. ++++|++.++ + .+||+|||. |||..
T Consensus 197 ~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~-~--~~~viEiN~R~~g~~ 248 (363)
T 4ffl_A 197 MVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP-K--GLRVIEIDARFPSQT 248 (363)
T ss_dssp EEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET-T--EEEEEEEECSCCSSH
T ss_pred eecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC-C--eEEEEEEeCCCCCCh
Confidence 0011222467899999999999986 6679999985 2 599999999 88855
No 35
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.68 E-value=9e-16 Score=151.68 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=148.5
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCC--------------Cc---------CCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPL--------------SD---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l--------------~~---------q~~fDvilhK~t~~~~~~~l~~~~~~~p~v 101 (343)
.-..+..+++++|++++.+|.+..- .+ ...+|+|+.-... ...+.+..+.+ -|+
T Consensus 30 ~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~-~~~~~~~~l~~--~gi 106 (433)
T 2dwc_A 30 LGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA-INLDALFEFEK--DGY 106 (433)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC-SCHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECccc-CCHHHHHHHHh--cCC
Confidence 3456888899999999999976311 00 1267888765532 11222323222 367
Q ss_pred eeeChhhHHHHhcCHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L-~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~ 180 (343)
++.+++++++.+.||..+.+.| +++ +||+|++..+.+ .+++.+.. ..++||+|+||..+ + +|.+|.
T Consensus 107 ~~~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~g--~-gg~Gv~ 173 (433)
T 2dwc_A 107 FVVPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEAC--EKIGYPCHTKAIMS--S-SGKGSY 173 (433)
T ss_dssp CBSSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHH--HHHCSSEEEEECCC---------E
T ss_pred eeCCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHH--HhcCCCEEEEECCC--c-CCCCeE
Confidence 7789999999999999999998 755 899999998852 22232222 34789999999863 3 578999
Q ss_pred EEeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEEC-----CEEEEEEEecCCCCccccCccCCceeeecc
Q 019319 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVG-----EAIKVVRRFSLPDVTKQDLSTSAGVFRFPR 244 (343)
Q Consensus 181 iv~~~~~L~~l-----------~~p~v~QEFI~h~g~~~Kv~VIG-----~~v~~~~R~slp~~~~~~~~~~~g~~~~~~ 244 (343)
++.++++|.+. +.++++||||+. |.++.|.+++ +++.+..-....+.. ..|.+.-
T Consensus 174 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~------~~~~~~~-- 244 (433)
T 2dwc_A 174 FVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGHYQ------IDGDYHA-- 244 (433)
T ss_dssp EECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEEEE------SSSSEEE--
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccceEE------EcCEEEE--
Confidence 99999887642 368999999964 8999998874 332211111110000 0111110
Q ss_pred cccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 245 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 245 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
.. .+..+++.. .+.+.++|.++.++||+ .++++|++++.+ ++||+|||.-||.. +.
T Consensus 245 ~~------~p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~-~~ 301 (433)
T 2dwc_A 245 SW------QPAEISEKA-----EREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDT-GM 301 (433)
T ss_dssp EE------ESCCCCHHH-----HHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGG-GG
T ss_pred EE------cCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCC-cc
Confidence 00 122222221 34679999999999999 677899999853 59999999999976 54
No 36
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.68 E-value=2.7e-15 Score=145.81 Aligned_cols=224 Identities=10% Similarity=0.049 Sum_probs=153.4
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC--cCC-CccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLS--DQG-PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~--~q~-~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~ 121 (343)
.-+.+..+|+++|+++ +|++..-. -.+ ..|+|..-... .....++...+. + .|..+++++..+.||..+-+
T Consensus 12 lg~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~-v~~~~l~~l~~~--~-~v~p~~~a~~~~~DK~~~k~ 85 (355)
T 3eth_A 12 LGRMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIER-WPETALTRQLAR--H-PAFVNRDVFPIIADRLTQKQ 85 (355)
T ss_dssp HHHHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSC-CCCCHHHHHHHT--C-TTBTTTTHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCC-cCHHHHHHHHhc--C-CcCCCHHHHHHhcCHHHHHH
Confidence 4456888999999999 56654211 011 56887765543 112333333333 4 78999999999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC--hhhHhc--cCCCeEE
Q 019319 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVL 197 (343)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~--~~~L~~--l~~p~v~ 197 (343)
.|+++ +||+|++..+++ .+++.+.. ..++||+|+||..+ |+ .++++.++.+ +++|.+ ++ ++++
T Consensus 86 ~l~~~-------GIptp~~~~v~~-~~e~~~~~--~~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~viv 152 (355)
T 3eth_A 86 LFDKL-------HLPTAPWQLLAE-RSEWPAVF--DRLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIV 152 (355)
T ss_dssp HHHHT-------TCCBCCEEEECC-GGGHHHHH--HHHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEE
T ss_pred HHHHC-------ccCCCCEEEECC-HHHHHHHH--HHcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEE
Confidence 99976 899999998853 33333322 35899999999874 45 5799999999 888765 24 7999
Q ss_pred EecccCCCcEEEEEEECC---EEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHH
Q 019319 198 QEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLA 274 (343)
Q Consensus 198 QEFI~h~g~~~Kv~VIG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA 274 (343)
||||+ .++.+-|.++++ ++.+. |-.+ + . ...|.+... ..+..+++.. .+.++++|
T Consensus 153 Ee~I~-~~~Eisv~v~~~~~G~~~~~-----p~~e-~-~-~~~g~~~~~--------~~pa~l~~~~-----~~~~~~~a 210 (355)
T 3eth_A 153 EQGIN-FSGEVSLVGARGFDGSTVFY-----PLTH-N-L-HQDGILRTS--------VAFPQANAQQ-----QARAEEML 210 (355)
T ss_dssp EECCC-CSEEEEEEEEECTTSCEEEC-----CCEE-E-E-EETTEEEEE--------EECSSCCHHH-----HHHHHHHH
T ss_pred EEccC-CCcEEEEEEEEcCCCCEEEE-----CCEE-E-E-eeCCeEEEE--------ECCCCCCHHH-----HHHHHHHH
Confidence 99997 478999999853 33321 2100 0 0 012333221 0122333322 35678999
Q ss_pred HHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 275 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 275 ~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.++.++||.. ++++|+++++ + ++||+|||.=|+-.
T Consensus 211 ~~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~~s 246 (355)
T 3eth_A 211 SAIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVHNS 246 (355)
T ss_dssp HHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGG
T ss_pred HHHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCCCC
Confidence 9999999985 7889999975 3 69999999999975
No 37
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.68 E-value=9.4e-16 Score=149.02 Aligned_cols=229 Identities=13% Similarity=0.201 Sum_probs=149.9
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc-----------------------CCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~~~~~~p~v 101 (343)
....+..+++++|++++.+|....-.. +..+|+|+.-.-. ...+.+.. .++ -|+
T Consensus 22 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~-~~~~~~~~-l~~-~gi 98 (391)
T 1kjq_A 22 LGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEA-IATDMLIQ-LEE-EGL 98 (391)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSC-SCHHHHHH-HHH-TTC
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCc-CCHHHHHH-HHh-CCC
Confidence 345688899999999999998531110 1256777753321 11222222 222 477
Q ss_pred eeeChhhHHHHhcCHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L-~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~ 180 (343)
++.+++++++.+.||..+.+.| +++ +||+|++..+. +.+++.+.. ..++||+|+||..+ + +|.+|.
T Consensus 99 ~~~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g--~-gg~Gv~ 165 (391)
T 1kjq_A 99 NVVPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFAD-SESLFREAV--ADIGYPCIVKPVMS--S-SGKGQT 165 (391)
T ss_dssp EESSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEES-SHHHHHHHH--HHHCSSEEEEESCC------CCCE
T ss_pred CcCCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeC-CHHHHHHHH--HhcCCCEEEEeCCC--C-CCCCeE
Confidence 7889999999999999999998 655 89999999885 222232222 34789999999863 3 578999
Q ss_pred EEeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCccccCccCCceeeeccccc
Q 019319 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 247 (343)
Q Consensus 181 iv~~~~~L~~l-----------~~p~v~QEFI~h~g~~~Kv~VIG~--~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~ 247 (343)
++.++++|.+. +.++++||||+. |.++.|.++++ .+... +... ... ..+.+. ...
T Consensus 166 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~~-----~~~~--~~~-~~~~~~--~~~- 233 (391)
T 1kjq_A 166 FIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHFC-----APVG--HRQ-EDGDYR--ESW- 233 (391)
T ss_dssp EECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEEC-----CCEE--EEE-ETTEEE--EEE-
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEEc-----cCcc--eEE-ECCEEE--EEE-
Confidence 99999887642 468999999974 89999988853 32211 1000 000 011111 000
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 248 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 248 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
.+..+++.. .+.+.++|.++.++||+ .++++|++++.+ ++||+|||.-||.. +.
T Consensus 234 -----~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~-~~ 288 (391)
T 1kjq_A 234 -----QPQQMSPLA-----LERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDT-GM 288 (391)
T ss_dssp -----ECCCCCHHH-----HHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGG-GG
T ss_pred -----eCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCC-cc
Confidence 022222211 35678999999999999 678899999753 59999999999976 54
No 38
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.67 E-value=2.5e-16 Score=152.08 Aligned_cols=219 Identities=15% Similarity=0.153 Sum_probs=128.9
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC--cC--------------CCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLS--DQ--------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYA 109 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~--~q--------------~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~a 109 (343)
...+.++++++|++++.+|.+.... .. ..+|+|+....+. ....+ +..+. ++.+++++
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~-~~~~~-~~l~~----~~g~~~~~ 86 (365)
T 2z04_A 13 GWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHI-KDEVL-EKCES----KLIPNPQA 86 (365)
T ss_dssp HHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCC-CHHHH-HHHTT----TBSSCTHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCC-cHHHH-HHHhh----hcCCCHHH
Confidence 4568889999999999999864221 10 2468888765331 12222 33322 67899999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHh
Q 019319 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (343)
Q Consensus 110 i~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~ 189 (343)
++.+.||..+.+.|+++ +||+|++..++ .+++.+. ...++||+|+||..++ -.|.++.++.++++|.
T Consensus 87 ~~~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~--~~~~~~P~vvKp~~~~--~~g~Gv~~v~~~~el~ 153 (365)
T 2z04_A 87 LYVKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDA--LKSFKLPVVIKAEKLG--YDGKGQYRIKKLEDAN 153 (365)
T ss_dssp HHHHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC---------------------
T ss_pred HHHhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHH--HHhcCCCEEEEEcCCC--cCCCCeEEECCHHHHH
Confidence 99999999999999975 89999999875 2233321 2357899999998854 1256899999998876
Q ss_pred cc------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCccccCccCCceeeecccccccccCCCCCCCc
Q 019319 190 KL------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (343)
Q Consensus 190 ~l------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (343)
+. +.++++||||+. |+++.|.++++ ++.+. .... +. ..+.++... .+..
T Consensus 154 ~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~~--------~~-~~~~~~~~~--------~p~~--- 212 (365)
T 2z04_A 154 QVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFYPQPFN--------KH-EEGILIYNY--------VPYA--- 212 (365)
T ss_dssp -----------CEEEECCCC-SEEEEEEEEECTTCCEEECCEEEE--------EE-ETTEEEEEE--------EEEE---
T ss_pred HHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEECCEEE--------EE-eCCEeEEEE--------CCHh---
Confidence 53 468999999964 89999999963 44322 1100 00 012222100 0111
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 260 CVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+ .+.++++|.++.++||+. ++++|++++. +| ++|++|||.-||..
T Consensus 213 ----~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~ 258 (365)
T 2z04_A 213 ----K--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNT 258 (365)
T ss_dssp ----C--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGG
T ss_pred ----H--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCC
Confidence 1 356899999999999996 7789999975 45 69999999999875
No 39
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.65 E-value=2.1e-15 Score=143.33 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=123.2
Q ss_pred CCccEEEEccCchh-HHHHHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCch
Q 019319 73 GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (343)
Q Consensus 73 ~~fDvilhK~t~~~-~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (343)
.++|+++.-..++. ..+.+.+... .+|.++.+++++++.+.||..+.+.|+ . +|++|++.+
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~-~~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAE-KYCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHH-TTSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHH-hcCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 47888776644322 2233333333 357889999999999999999999998 4 789999874
Q ss_pred HHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECC-EEEEEEEecCCCCcc
Q 019319 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE-AIKVVRRFSLPDVTK 230 (343)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~-~v~~~~R~slp~~~~ 230 (343)
..++||+|+||..++ +|.++.++.+ .+.++++||||+ |+++.|.++++ .+....+.. .
T Consensus 130 -----~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~-~---- 188 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE-Q---- 188 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE-E----
T ss_pred -----ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee-E----
Confidence 247899999998854 4678888887 567899999996 99999999954 333322110 0
Q ss_pred ccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CC-cEeEEEEEEeCCCCCeEEEEEecCC
Q 019319 231 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GL-RLFNLDIIREHGTRDQFYVIDINYF 308 (343)
Q Consensus 231 ~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl-~l~GvDvi~~~~~g~~~~ViDVN~f 308 (343)
+... +.+. .+ ..+..+++.. .+.++++|.++.++| |+ .++|+|++++ | ++|++|||.-
T Consensus 189 --~~~~---~~~~----g~--~~p~~l~~~~-----~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR 248 (305)
T 3df7_A 189 --IINN---FRYA----GA--VVPARISDEV-----KREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINAR 248 (305)
T ss_dssp --EEET---TEEE----EE--EESCCCCHHH-----HHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESS
T ss_pred --eccC---ceec----cc--cccCCCCHHH-----HHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCC
Confidence 0000 1111 00 1122222221 367899999999999 95 5778999984 3 5899999999
Q ss_pred CCCc
Q 019319 309 PGEV 312 (343)
Q Consensus 309 Pg~~ 312 (343)
||..
T Consensus 249 ~~~~ 252 (305)
T 3df7_A 249 LTTP 252 (305)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9984
No 40
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.64 E-value=6.2e-15 Score=139.59 Aligned_cols=227 Identities=16% Similarity=0.165 Sum_probs=137.1
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC--------c---CCC-c---------cEEEEccCchhHHHHHHHHHHhCCCcee
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLS--------D---QGP-F---------DIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~--------~---q~~-f---------DvilhK~t~~~~~~~l~~~~~~~p~v~V 103 (343)
....+.++++++|++++.+|.+.... + ..+ + |+|+.. ........++.. +..|+++
T Consensus 12 ~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~-~e~~~~~~~~~l--e~~g~~~ 88 (334)
T 2r85_A 12 SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPT-GSFVAHLGIELV--ENMKVPY 88 (334)
T ss_dssp THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCC-TTHHHHHCHHHH--HTCCSCB
T ss_pred hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEEC-cchhhhhHHHHH--HHcCCCc
Confidence 45568889999999999999874210 1 112 3 555422 111111112222 3568888
Q ss_pred eChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEe
Q 019319 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (343)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~ 183 (343)
+++++++..+.||..+.+.|+++ +||+|++ +. +. ..+.||+|+||..++ +|.++.++.
T Consensus 89 ~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv~~v~ 146 (334)
T 2r85_A 89 FGNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGYFLAK 146 (334)
T ss_dssp BSCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEES
T ss_pred cCCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCEEEEC
Confidence 99999999999999999999976 8999998 32 21 126799999998854 477899999
Q ss_pred ChhhHhcc----------C--CCeEEEecccCCCcEEEEEE----ECCEEEEE---EEecCC-C-C---ccc-cCccCCc
Q 019319 184 DQYSLKKL----------E--PPLVLQEFVNHGGVLFKVYI----VGEAIKVV---RRFSLP-D-V---TKQ-DLSTSAG 238 (343)
Q Consensus 184 ~~~~L~~l----------~--~p~v~QEFI~h~g~~~Kv~V----IG~~v~~~---~R~slp-~-~---~~~-~~~~~~g 238 (343)
++++|... + .++++||||+ |..+-+.+ +++++.+. .|.... + + ... .+....+
T Consensus 147 ~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (334)
T 2r85_A 147 DPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMD 224 (334)
T ss_dssp SHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccC
Confidence 99887642 2 6899999995 77765322 22222111 111100 0 0 000 0000000
Q ss_pred eeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC------CcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG------LRLFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG------l~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
. ...-.+.. +..+++.. .+.++++|.++.++|| ..++++|++++. +| ++|++|||.-||-
T Consensus 225 ~----~~~~~g~~--p~~l~~~~-----~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 225 I----TYTVIGNI--PIVLRESL-----LMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp C----CEEEEEEE--ECCCCGGG-----HHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSCCG
T ss_pred C----ceeeeCCC--CcccCHHH-----HHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCcCC
Confidence 0 00000000 12222221 4678999999999994 567789999975 34 6899999999987
No 41
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.60 E-value=1.9e-14 Score=142.90 Aligned_cols=175 Identities=14% Similarity=0.240 Sum_probs=120.9
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
.|++++ .++++++.+.||..+.++|+++ +||+|++. .+. +.+++.+. ...++||+|+||..+. +
T Consensus 102 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~--~~~~g~PvvvKp~~g~---g 168 (446)
T 3ouz_A 102 HNIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKL--AKEIGYPVILKAAAGG---G 168 (446)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHH--HHHHCSSEEEEETTCC---T
T ss_pred CCCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCC---C
Confidence 478887 8899999999999999999976 89999986 443 22222222 2357899999998743 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEe-cCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~-slp~~~~~~~~~~~ 237 (343)
|.+|.++.++++|.+. +.++++||||+ +.+.+.|.|+++ +++.. .|. +... . ..
T Consensus 169 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~---~----~~ 240 (446)
T 3ouz_A 169 GRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQR---R----HQ 240 (446)
T ss_dssp TCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEE---T----TE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeee---c----Cc
Confidence 7899999999887652 57899999996 238999999865 33322 221 1100 0 00
Q ss_pred ceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
.... ..+. .+++.. .+.+.++|.++.++||+.- +++|++++. +| ++|++|||.=|+-
T Consensus 241 ~~~~----------~~p~~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~~iEiNpR~~g 299 (446)
T 3ouz_A 241 KLIE----------ESPAILLDEKT-----RTRLHETAIKAAKAIGYEGAGTFEFLVDK-NL-DFYFIEMNTRLQV 299 (446)
T ss_dssp EEEE----------EESCTTSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCT
T ss_pred eEEE----------ECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEeC-CC-CEEEEEeECCCCC
Confidence 0000 0011 122211 3568899999999999964 559999986 34 6999999999863
No 42
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.59 E-value=1.4e-14 Score=137.51 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=103.8
Q ss_pred CCce-eeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~-ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
.|++ +.++++++..+.||..+.+.|+++ +|++|++.... +++.+.+....++||+|+||..+. +|.
T Consensus 97 ~g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~---g~~ 163 (331)
T 2pn1_A 97 IGVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGS---ASI 163 (331)
T ss_dssp TTCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred CCcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCC---CCC
Confidence 4775 468899999999999999999986 89999987531 112222222468999999998854 478
Q ss_pred eeEEEeChhhHhcc---CCCeEEEecccCCCcEEEEEEEC----CEEE-EEEEecCCCCccccCccCCceeeeccccccc
Q 019319 178 ELSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIVG----EAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA 249 (343)
Q Consensus 178 ~m~iv~~~~~L~~l---~~p~v~QEFI~h~g~~~Kv~VIG----~~v~-~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~ 249 (343)
++.++.++++|.+. ..++++||||+ |..+.|.+++ +++. +..+.... . ..|.... +
T Consensus 164 gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~-------~~g~~~~---~--- 227 (331)
T 2pn1_A 164 EVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-M-------RAGETDK---S--- 227 (331)
T ss_dssp -------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-E-------ETTEEEE---E---
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-e-------cCCceeE---e---
Confidence 89999999888764 46899999995 7999988876 3444 33332211 0 0111100 0
Q ss_pred ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecC-CCCCc
Q 019319 250 ASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINY-FPGEV 312 (343)
Q Consensus 250 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~-fPg~~ 312 (343)
. + +..+.+.++|.++.++||+ .++++|++.+ +| ++|++|||. +||..
T Consensus 228 ----~----~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~~ 276 (331)
T 2pn1_A 228 ----R----S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGGY 276 (331)
T ss_dssp ----E----E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTTH
T ss_pred ----E----E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCch
Confidence 0 0 0135689999999999999 5778999954 34 799999999 67743
No 43
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.58 E-value=2.4e-14 Score=156.82 Aligned_cols=227 Identities=15% Similarity=0.255 Sum_probs=141.0
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc--C----------------------CCccEEEEccCchhHHHHHHHHHHhCC
Q 019319 44 FLQPKLEGLARNKGILFVAIDQNRPLSD--Q----------------------GPFDIVLHKLTGKEWRQILEEYRQTHP 99 (343)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~ID~~~~l~~--q----------------------~~fDvilhK~t~~~~~~~l~~~~~~~p 99 (343)
+.+..+..++++.|++++.+|.+..... . ...|.|+.-...... ..+.+..++ .
T Consensus 580 ~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~-~ 657 (1073)
T 1a9x_A 580 YCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEA-A 657 (1073)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHH-T
T ss_pred hhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHH-C
Confidence 3445578899999999999997642211 0 123444432222111 122233322 4
Q ss_pred Cceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
|++++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+. +|.+
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s-~eea~~~--~~~ig~PvvVKP~~~~---gG~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTA-IEMAVEK--AKEIGYPLVVRASYVL---GGRA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCS-HHHHHHH--HHHHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECC-HHHHHHH--HHHcCCCEEEEECCCC---CCCC
Confidence 78877 8899999999999999999987 899999998852 2222222 2347999999998853 4789
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCc-EEEEEEECCE--EEE--EEEecCC-CCccccCccCCceeeec
Q 019319 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGV-LFKVYIVGEA--IKV--VRRFSLP-DVTKQDLSTSAGVFRFP 243 (343)
Q Consensus 179 m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~-~~Kv~VIG~~--v~~--~~R~slp-~~~~~~~~~~~g~~~~~ 243 (343)
|.+++++++|.+. +.|+++|+||+ |. .+.|-++++. +.+ +.+.-.+ ++..++ ....
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~~-- 795 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SACS-- 795 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCT--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCEE--
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceEE--
Confidence 9999999988753 35899999995 55 8888777543 332 2221111 111000 0000
Q ss_pred ccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 244 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 244 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
.....+++.. .+.++++|.++.++||+ .++++|+++++ | ++||||||.-||
T Consensus 796 --------~P~~~l~~~~-----~~~i~~~a~~i~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 796 --------LPAYTLSQEI-----QDVMRQQVQKLAFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAA 847 (1073)
T ss_dssp --------ESCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECS--S-CEEEEEEECSCC
T ss_pred --------ecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-eEEEEEEECCCc
Confidence 0011222211 35689999999999999 78899999963 3 689999999887
No 44
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.58 E-value=5.5e-14 Score=140.08 Aligned_cols=202 Identities=9% Similarity=0.047 Sum_probs=126.6
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCch
Q 019319 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (343)
Q Consensus 74 ~fDvilhK~t~~~~-~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (343)
.+|+|+. ..+.. ...+.+..++ .|++++ .++++++.+.||..+.++|+++ +||+|++..+. +.+++.
T Consensus 83 ~id~vv~--g~E~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~-~~~ea~ 151 (442)
T 3lp8_A 83 KIELVVI--GPETPLMNGLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFV-DTNSAY 151 (442)
T ss_dssp TCCEEEE--CSHHHHHTTHHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEES-SHHHHH
T ss_pred CCCEEEE--CCcHHHHHHHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEEC-CHHHHH
Confidence 5666665 22211 1223333333 488888 9999999999999999999987 89999999885 222233
Q ss_pred HHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEEC--CE
Q 019319 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG--EA 216 (343)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG--~~ 216 (343)
+.+ ..++||+|+||..+ + .|.++.++.+++++.+. ..++++||||+ |.++.|.++. +.
T Consensus 152 ~~~--~~~g~PvVvKp~~~--~-gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~ 224 (442)
T 3lp8_A 152 KFI--DKHKLPLVVKADGL--A-QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSN 224 (442)
T ss_dssp HHH--HHSCSSEEEEESSC--C-TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSC
T ss_pred HHH--HHcCCcEEEeECCC--C-CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCe
Confidence 322 34899999999763 3 57899999999887542 25899999996 8999988884 34
Q ss_pred EEEE--EEecCCCCccccCccCCceeeecccccccccCCCCC-CCccccCCCChHHHHHH----HHHHHHHhCCcEe---
Q 019319 217 IKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLF--- 286 (343)
Q Consensus 217 v~~~--~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~l----A~~l~~~lGl~l~--- 286 (343)
+... .+.--+.+. ++ ...+... .+.. .+.. ++++. .+.+.+. +.++.+++|+.+.
T Consensus 225 ~~~~~~~~~~~~~~~-~~-------~g~~~gg-~g~~-~P~~~l~~~~-----~~~i~~~i~~~a~~~~~a~g~~~~G~~ 289 (442)
T 3lp8_A 225 PVILGVAQDYKTIGD-NN-------KGPNTGG-MGSY-SKPNIITQEM-----EHIIIQKIIYPTIKAMFNMNIQFRGLL 289 (442)
T ss_dssp EEEEEEEEECCEEEG-GG-------EEEECSC-SEEE-ECTTSSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEEeEEeEeeeeccc-CC-------CCCCCCC-cEEE-eeCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 4422 221101000 00 0000000 0000 1111 22111 2334444 7777799999554
Q ss_pred EEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 287 NLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 287 GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
++|++.+. +| ++|||+|.-||-
T Consensus 290 ~ve~~~~~-~g--~~viEiN~R~g~ 311 (442)
T 3lp8_A 290 FAGIIIKK-NE--PKLLEYNVRFGD 311 (442)
T ss_dssp EEEEEEET-TE--EEEEEEESSCCT
T ss_pred EEEEEEeC-CC--eEEEEEecCCCC
Confidence 49999985 34 899999999993
No 45
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.57 E-value=6.1e-14 Score=153.60 Aligned_cols=228 Identities=16% Similarity=0.219 Sum_probs=150.6
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC-------c-----------------CCCccEEEEccCchhHH---HHHHH--HHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLS-------D-----------------QGPFDIVLHKLTGKEWR---QILEE--YRQ 96 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~-------~-----------------q~~fDvilhK~t~~~~~---~~l~~--~~~ 96 (343)
-..+++++++.|++++.+|.+.... + ...+|+|+.-....... ..+.+ ..+
T Consensus 30 g~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le 109 (1073)
T 1a9x_A 30 GAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLE 109 (1073)
T ss_dssp HHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHH
Confidence 3458889999999999999764321 0 12567777655432111 11221 222
Q ss_pred hCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 97 THPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 97 ~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
.-|+.++ .+++++..+.||..+.++|+++ |||+|++.++++ .+++.+. ...++||+|+||..+.|
T Consensus 110 -~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~--~~~ig~PvVvKp~~~~G--- 175 (1073)
T 1a9x_A 110 -EFGVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAV--AADVGFPCIIRPSFTMG--- 175 (1073)
T ss_dssp -HHTCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHH--HHHHCSSEEEEETTCCT---
T ss_pred -HcCCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEECCCCC---
Confidence 2378888 8999999999999999999986 899999998852 2222221 23479999999988544
Q ss_pred ceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECCE---EEEE--EEecCCCCccccCccCCcee
Q 019319 176 SHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVV--RRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g-~~~Kv~VIG~~---v~~~--~R~slp~~~~~~~~~~~g~~ 240 (343)
|.++.++.++++|.+. ..++++||||+ | +.+.|-|++|. +..+ ..+--|. .+. .|.
T Consensus 176 g~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~--G~~E~~v~v~~d~~g~~v~~~~~e~~dp~----~v~--~g~- 246 (1073)
T 1a9x_A 176 GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLI--GWKEYEMEVVRDKNDNCIIVCSIENFDAM----GIH--TGD- 246 (1073)
T ss_dssp TTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT--TSEEEEEEEEECTTCCEEEEEEEEESSCT----TSC--GGG-
T ss_pred CCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCeEEEEEEEEeCCCCEEEEEEEecccCC----ccc--cCc-
Confidence 6689999999988653 34799999995 5 79999999863 3322 1111110 000 000
Q ss_pred eecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 241 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
... ..+. .+++.. .+.+.++|.++.++||+. .+++|++++.++| ++||||||.=++
T Consensus 247 ---s~~-----~~Pa~~l~~~~-----~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 247 ---SIT-----VAPAQTLTDKE-----YQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp ---SCE-----EESCCSCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred ---EEE-----EecCCCCCHHH-----HHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 000 0011 122111 356889999999999997 8889999985445 699999995444
No 46
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=7.7e-14 Score=137.14 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=115.9
Q ss_pred Cceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
|++++ .++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+. +|.+
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~---gg~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFR-EPLEALAYL--EEVGVPVVVKDSGLA---AGKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEES-SHHHHHHHH--HHHCSSEEEECTTSC---SSTT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCC
Confidence 77787 8999999999999999999976 89999999885 222232222 247899999998743 5789
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECC--EEEEE--EEecCCCCccccCccCCceeeeccc
Q 019319 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVV--RRFSLPDVTKQDLSTSAGVFRFPRV 245 (343)
Q Consensus 179 m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~--~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~ 245 (343)
|.++.++++|.+. +.++++||||+ |.++.|.++++ .++.. .|..-+... .+ .+ .++ .
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~~-~~----~~-~~~--g 221 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRLLD-GD----QG-PMT--G 221 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEEET-TT----EE-EEC--S
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhhcc-CC----CC-CcC--C
Confidence 9999999887642 26899999996 89999988843 33332 121100000 00 00 010 0
Q ss_pred ccccccCCCCCCCccccCCCChHHH-HHHHHHHHHHh---CCc---EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 246 SCAAASADDADLDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 246 s~~~~~~~~~~~~~~~~~~p~~~~~-~~lA~~l~~~l---Gl~---l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.. +. ..+..++++. .+.+ ++++.++.++| |++ ++++|++++. +| +||+|||.-||-.
T Consensus 222 ~~-~~-~~p~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 222 GM-GA-VAPYPMDEAT-----LRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp CS-EE-EESCCCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred CC-ee-eeCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 00 00 0111122111 1223 55577777776 444 5669999975 44 8999999999854
No 47
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.56 E-value=7.8e-14 Score=138.47 Aligned_cols=182 Identities=13% Similarity=0.042 Sum_probs=117.2
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
.|++++ .++++++.+.||..+.++|+++ +||+|++..++ +.+++.+.+ ..++||+|+||..+. .|.
T Consensus 90 ~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~-~~~ea~~~~--~~~g~PvVvKp~~~~---gg~ 156 (431)
T 3mjf_A 90 AGLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFT-DVEAALAYV--RQKGAPIVIKADGLA---AGK 156 (431)
T ss_dssp TTCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSSC---TTC
T ss_pred cCCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeC-CHHHHHHHH--HHcCCeEEEEECCCC---CCC
Confidence 478887 9999999999999999999976 89999999885 322233322 347899999997643 578
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCccccCccCCceeee
Q 019319 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRF 242 (343)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~--~v~~~~R~slp~~~~~~~~~~~g~~~~ 242 (343)
++.++.+++++.+. ..++++||||+ |.++.|.++.| ++... +-.. +. ...+++
T Consensus 157 GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~-----~~~~--~~---~~~~~~ 224 (431)
T 3mjf_A 157 GVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVDGENVLPM-----ATSQ--DH---KRVGDG 224 (431)
T ss_dssp SEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEESSCEEEC-----CCBE--EC---CEEETT
T ss_pred cEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEcCCEEEEE-----EeeE--ec---eecccC
Confidence 99999999887542 35899999996 89999988844 44322 1000 00 001111
Q ss_pred ccccccccc--CCCCC-CCccccCCCChHHHHHH----HHHHHHHhCCcEeE---EEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 243 PRVSCAAAS--ADDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 243 ~~~s~~~~~--~~~~~-~~~~~~~~p~~~~~~~l----A~~l~~~lGl~l~G---vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+.....+.. ..+.. ++++. .+.+.+. +.++.+++|+.+.| +|++.+. +| +++|||+|.-||..
T Consensus 225 ~~g~~~gg~g~~~P~~~l~~~~-----~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~~ 297 (431)
T 3mjf_A 225 DTGPNTGGMGAYSPAPVVTDDV-----HQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGDP 297 (431)
T ss_dssp TEEEECSCSEEEESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGSTT
T ss_pred CCCCCCCCceEEeeCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCCc
Confidence 100000000 01111 21111 1223332 45666888986544 9999985 44 69999999999944
No 48
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.56 E-value=1.1e-13 Score=137.30 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=144.3
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC-C-------------------c------------CCCccEEEEccCc-hhHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPL-S-------------------D------------QGPFDIVLHKLTG-KEWRQILE 92 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l-~-------------------~------------q~~fDvilhK~t~-~~~~~~l~ 92 (343)
..+++++|+++|++++.+|.+..- . + ...+|+|+.-... .+. ..+.
T Consensus 13 ~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~~~~ 91 (451)
T 2vpq_A 13 AVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAEN-ADFA 91 (451)
T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTC-HHHH
T ss_pred HHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccC-HHHH
Confidence 345788889999998888643110 0 0 1245665543210 011 1223
Q ss_pred HHHHhCCCceeeC-hhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCC
Q 019319 93 EYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (343)
Q Consensus 93 ~~~~~~p~v~ViD-p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (343)
+.. +..|++++. ++++++.+.||..+.+.|+++ +||+|++. .+. +.+++.+.+ ..++||+|+||..
T Consensus 92 ~~~-~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~ 160 (451)
T 2vpq_A 92 ELC-EACQLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKIA--KKIGYPVIIKATA 160 (451)
T ss_dssp HHH-HTTTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHHH--HHHCSSEEEEETT
T ss_pred HHH-HHcCCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHHH--HhcCCcEEEEECC
Confidence 333 346888765 589999999999999999976 89998866 453 222222222 3478999999988
Q ss_pred CCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEe-cCCCCccc
Q 019319 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQ 231 (343)
Q Consensus 170 a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~-slp~~~~~ 231 (343)
+. +|.+|.++.++++|.+. +.++++||||+ +++++.|.++++ ++... .|. +.. .
T Consensus 161 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~--~-- 232 (451)
T 2vpq_A 161 GG---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQ--R-- 232 (451)
T ss_dssp CC---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEE--E--
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchh--c--
Confidence 43 57899999999887642 46899999995 237899888764 34433 221 110 0
Q ss_pred cCccCCceeeecccccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCC
Q 019319 232 DLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFP 309 (343)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~-GvDvi~~~~~g~~~~ViDVN~fP 309 (343)
.....+. ..+.. +++.. .+.+.++|.++.++||+.-+ ++|++++..+| ++||+|||.-|
T Consensus 233 ---~~~~~~~----------~~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R~ 293 (451)
T 2vpq_A 233 ---RMQKLVE----------EAPSPILDDET-----RREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRI 293 (451)
T ss_dssp ---TTEEEEE----------EESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSC
T ss_pred ---cccceEE----------EcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCCC
Confidence 0000000 00111 22111 35688999999999999854 59999982245 79999999988
Q ss_pred CCc
Q 019319 310 GEV 312 (343)
Q Consensus 310 g~~ 312 (343)
|-.
T Consensus 294 ~~~ 296 (451)
T 2vpq_A 294 QVE 296 (451)
T ss_dssp CTT
T ss_pred CCc
Confidence 754
No 49
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.56 E-value=1.1e-13 Score=137.74 Aligned_cols=179 Identities=10% Similarity=0.088 Sum_probs=113.2
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
.|++++ .++++++.+.||..+.++|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+. .|.
T Consensus 106 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~PvVvKp~~~~---gg~ 172 (451)
T 2yrx_A 106 EGLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFT-SYEEAKAYI--EQKGAPIVIKADGLA---AGK 172 (451)
T ss_dssp TTCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEECC-------C
T ss_pred CCCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HhcCCcEEEEeCCCC---CCC
Confidence 478887 7889999999999999999976 89999999885 222233222 247899999998853 578
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCccccCccCCcee
Q 019319 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VI--G~~v~~~--~R~slp~~~~~~~~~~~g~~ 240 (343)
++.++.++++|.+. ..++++||||+ |.++.|.++ |+.+... .|.. ...+
T Consensus 173 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~------------~~~~ 238 (451)
T 2yrx_A 173 GVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPLAIAQDH------------KRAY 238 (451)
T ss_dssp CEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEECCCBEEC------------CEEE
T ss_pred cEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEeeeEEec------------cccc
Confidence 99999999887642 26899999996 899998877 3433321 1110 0011
Q ss_pred eeccccccccc--CCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCc---EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 241 RFPRVSCAAAS--ADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 241 ~~~~~s~~~~~--~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~l---Gl~---l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
++......+.. ..+.. +++.. .+.+ ++++.++.++| |+. ++++|++++. +| +||+|||.-||
T Consensus 239 ~~~~~~~~g~~~~~~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g 310 (451)
T 2yrx_A 239 DGDEGPNTGGMGAYSPVPQISDEM-----MDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PKVIEFNARFG 310 (451)
T ss_dssp TTTEEEECSCSEEEESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCC
T ss_pred cCCCCCCCCCCeEEccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCC
Confidence 10000000000 01111 21111 1223 55677777765 655 4568999985 34 89999999998
Q ss_pred Cc
Q 019319 311 EV 312 (343)
Q Consensus 311 ~~ 312 (343)
-.
T Consensus 311 ~~ 312 (451)
T 2yrx_A 311 DP 312 (451)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 50
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.56 E-value=1.1e-13 Score=137.82 Aligned_cols=226 Identities=13% Similarity=0.146 Sum_probs=145.1
Q ss_pred hHHHhhhhhcceEEEEeeCCCCC-C--------------------c------------CCCccEEEEccCc-hhHHHHHH
Q 019319 47 PKLEGLARNKGILFVAIDQNRPL-S--------------------D------------QGPFDIVLHKLTG-KEWRQILE 92 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID~~~~l-~--------------------~------------q~~fDvilhK~t~-~~~~~~l~ 92 (343)
.+++++|+++|+.++.+|.+..- . . ...+|+|+.-... .+.. .+.
T Consensus 19 ~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~-~~~ 97 (461)
T 2dzd_A 19 IRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENI-QFA 97 (461)
T ss_dssp HHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCH-HHH
T ss_pred HHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCH-HHH
Confidence 45788889999999988765311 0 0 0235656543200 0111 222
Q ss_pred HHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCC
Q 019319 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (343)
Q Consensus 93 ~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (343)
+..++ .|++++ .++++++.+.||..+.++|+++ +||+|++. .+. +.+++.+.. ..++||+|+||..
T Consensus 98 ~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~ 166 (461)
T 2dzd_A 98 KRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFA--EAHGYPIIIKAAL 166 (461)
T ss_dssp HHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHH--HHHCSCEEEEEST
T ss_pred HHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHH--HhcCCcEEEEeCC
Confidence 33322 477765 7799999999999999999976 89999986 443 222222222 3478999999988
Q ss_pred CCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEE-EEEecCCCCcccc
Q 019319 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKV-VRRFSLPDVTKQD 232 (343)
Q Consensus 170 a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~-~~R~slp~~~~~~ 232 (343)
+. +|.+|.++.++++|.+. +.++++||||+ +++.+.|.++++ +++. ..|.. +.
T Consensus 167 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~~----- 236 (461)
T 2dzd_A 167 GG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-SV----- 236 (461)
T ss_dssp TC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-EE-----
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-cc-----
Confidence 53 57789999999887642 46899999996 347889888864 2443 22211 00
Q ss_pred CccCCceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 019319 233 LSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 233 ~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (343)
+......+.+ . +. .+++.. .+.+.++|.++.+++|+.-++ +|++++. | ++||+|||.-||
T Consensus 237 ~~~~~~~~~~---------~-P~~~l~~~~-----~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~~ 298 (461)
T 2dzd_A 237 QRRHQKVVEV---------A-PSVSLSDEL-----RQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRIQ 298 (461)
T ss_dssp EETTEEEEEE---------E-SCTTSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSCC
T ss_pred cccccceEEE---------C-CcccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCCC
Confidence 0000000000 0 11 121111 356889999999999999766 9999985 3 699999999888
Q ss_pred Cc
Q 019319 311 EV 312 (343)
Q Consensus 311 ~~ 312 (343)
..
T Consensus 299 ~~ 300 (461)
T 2dzd_A 299 VE 300 (461)
T ss_dssp GG
T ss_pred Cc
Confidence 55
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.54 E-value=1.9e-13 Score=137.49 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=119.6
Q ss_pred CCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCcee
Q 019319 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (343)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~ 178 (343)
-|++ -.+++++..+.||..+.++|+++ |||+|++..+.+ .+++.+ ....++||+|+||..+. +|.+
T Consensus 124 ~Gi~-g~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~--~~~~lg~PvVVKP~~g~---gg~G 189 (474)
T 3vmm_A 124 LGLR-GAGVQAAENARDKNKMRDAFNKA-------GVKSIKNKRVTT-LEDFRA--ALEEIGTPLILKPTYLA---SSIG 189 (474)
T ss_dssp TTCC-CSCHHHHHHTTCHHHHHHHHHHT-------TSCCCCEEEECS-HHHHHH--HHHHSCSSEEEEESSCC---TTTT
T ss_pred cCCC-CCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHH--HHHHcCCCEEEEECCCC---cCce
Confidence 4666 88999999999999999999976 899999998853 222222 22458999999998854 4678
Q ss_pred eEEEeChhhHhcc-------------------CCCeEEEecccCCCcE--------------EEEEEECCEEEEE--EEe
Q 019319 179 LSLAYDQYSLKKL-------------------EPPLVLQEFVNHGGVL--------------FKVYIVGEAIKVV--RRF 223 (343)
Q Consensus 179 m~iv~~~~~L~~l-------------------~~p~v~QEFI~h~g~~--------------~Kv~VIG~~v~~~--~R~ 223 (343)
|.++.++++|.+. +.++++||||+ |.. +.+++.++++.++ .++
T Consensus 190 v~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~--G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~ 267 (474)
T 3vmm_A 190 VTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQ--GEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDK 267 (474)
T ss_dssp CEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCC--BCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCC--CceeeeeecccccceeEEEEEEECCeEEEEEEEee
Confidence 9999999886532 46899999996 443 3446777775543 222
Q ss_pred cCCCCccccCccCCceeeecccccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE--EEEEEeCCCCCeEE
Q 019319 224 SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN--LDIIREHGTRDQFY 301 (343)
Q Consensus 224 slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G--vDvi~~~~~g~~~~ 301 (343)
. +... . .. ... ..+..+++.. .+.+.++|.++.+++|+.-.+ +|++.+. +| ++|
T Consensus 268 ~-~~~~---~--~~------~~~-----~~Pa~l~~~~-----~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~ 323 (474)
T 3vmm_A 268 T-PQIG---F--TE------TSH-----ITPSILDEEA-----KKKIVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPG 323 (474)
T ss_dssp C-CCBT---T--BC------CEE-----EESCCCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEE
T ss_pred c-cCCC---c--cc------eEE-----EECCCCCHHH-----HHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEE
Confidence 1 1100 0 00 000 0122222221 356899999999999998777 9999985 45 799
Q ss_pred EEEecCCCC
Q 019319 302 VIDINYFPG 310 (343)
Q Consensus 302 ViDVN~fPg 310 (343)
+||||.=||
T Consensus 324 ~iEvNpR~~ 332 (474)
T 3vmm_A 324 LIESAARFA 332 (474)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCCC
Confidence 999997765
No 52
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.54 E-value=8.6e-14 Score=136.98 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=116.3
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
-|++++ .++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+. +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~PvvvKp~~g~---gg~ 151 (424)
T 2yw2_A 85 RGLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFT-DFEKAKEYV--EKVGAPIVVKADGLA---AGK 151 (424)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSCC---TTC
T ss_pred CCCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HHcCCcEEEEeCCCC---CCC
Confidence 478887 8899999999999999999976 89999999885 222233222 347899999998743 578
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCccccCccCCcee
Q 019319 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VI--G~~v~~~--~R~slp~~~~~~~~~~~g~~ 240 (343)
+|.++.++++|.+. +.++++||||+ |.++.|.++ |+.++.. .|..-+.++ +..
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~~--------~~~ 221 (424)
T 2yw2_A 152 GAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYVPLPTSQDHKRLLD--------EDK 221 (424)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEECCEEET--------TTE
T ss_pred CEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEEeecceeecccccc--------CCC
Confidence 99999999887642 25899999996 889988777 4444322 121100000 000
Q ss_pred eecccccccccCCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCc---EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 241 RFPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~l---Gl~---l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
..+.... +. ..+.. ++++. .+.+ ++++.++.++| |+. ++++|++++. +| +||+|||.-||-.
T Consensus 222 ~~~~g~~-~~-~~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 291 (424)
T 2yw2_A 222 GPNTGGM-GA-YSPTPVINEEV-----EKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG--PKVLEFNVRLGDP 291 (424)
T ss_dssp EEECSCS-EE-EESCTTSCHHH-----HHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTT
T ss_pred CCCCCCC-ee-ECCCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCc
Confidence 0000000 00 01111 21111 1233 36777777776 554 4569999985 34 8999999999854
No 53
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.53 E-value=7.5e-14 Score=137.31 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCce
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
.|++++ .++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+ + .|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~--~-~g~ 151 (422)
T 2xcl_A 85 AGLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFT-SFDEAKAYV--QEKGAPIVIKADGL--A-AGK 151 (422)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSC--G-GGT
T ss_pred CCCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HhcCCCEEEEeCCC--C-CCC
Confidence 478887 8999999999999999999976 89999999885 222233222 24789999999874 3 578
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCccccCccCCcee
Q 019319 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVF 240 (343)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VI--G~~v~~~--~R~slp~~~~~~~~~~~g~~ 240 (343)
++.++.++++|.+. ..++++||||+ |.++.|.++ |+.++.. .|..-+.++ .+ .+.
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~~~~~~~~~~~~~~~~-~~----~~~- 223 (422)
T 2xcl_A 152 GVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEKVYPMVIAQDHKRAFD-GD----KGP- 223 (422)
T ss_dssp CEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEEEEEEEG-GG----EEE-
T ss_pred cEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCEEEecceeeeeehhcC-CC----CCC-
Confidence 99999999887642 26899999996 899999887 4433321 111000000 00 000
Q ss_pred eecccccccccCCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 241 RFPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 241 ~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~l---Gl~l---~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
++ ... +. ..+.. ++++. .+.+ ++++.++.++| |+.+ +++|++++. +| +||+|||.-||-.
T Consensus 224 ~~--g~~-~~-~~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g--~~viEiN~R~g~~ 291 (422)
T 2xcl_A 224 NT--GGM-GA-YSPVPQISEET-----VRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG--SKVIEFNARFGDP 291 (422)
T ss_dssp EE--EEE-EE-EESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTT
T ss_pred CC--CCC-ee-EccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC--cEEEEEecCCCCc
Confidence 00 000 00 01111 21111 1223 34777777775 5554 568999985 34 8999999999955
No 54
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.52 E-value=2.2e-13 Score=134.16 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=119.2
Q ss_pred eeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE
Q 019319 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (343)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i 181 (343)
++-.++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+ ....++||+|+||..+. .|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~e~~~--~~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAE-TPEELRE--KIKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEES-SHHHHHH--HHTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEEC-CHHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEE
Confidence 5668999999999999999999976 89999998885 2222222 12468999999998853 4789999
Q ss_pred EeChhhHhcc-----------C--CCeEEEecccCCCcEEEEEEEC--CEEEEEEEecCCCCccccCccCCceeeecccc
Q 019319 182 AYDQYSLKKL-----------E--PPLVLQEFVNHGGVLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (343)
Q Consensus 182 v~~~~~L~~l-----------~--~p~v~QEFI~h~g~~~Kv~VIG--~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s 246 (343)
+.++++|.+. . .++++||||+ |+++.|.++. +.+..... ..+.. ..+++....
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~--~~~~~--------~~~~~~~~~ 227 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPF--VRDYK--------RLMDGDRGP 227 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCC--CEECC--------EEETTTEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeee--eEeee--------eccCCCCCC
Confidence 9999887642 1 3899999996 8999998883 33322210 00000 001000000
Q ss_pred ccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHh-----CC-cEeEEEEEEeCCCCCeEEEEEecCCCCCccCC
Q 019319 247 CAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQL-----GL-RLFNLDIIREHGTRDQFYVIDINYFPGEVWEN 315 (343)
Q Consensus 247 ~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-----Gl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv 315 (343)
..+.. ..+..++++. .+.++++|.++.++| +. .++++|++++. +| +||+|||.-||-. +.
T Consensus 228 ~~g~~~~~~P~~l~~~~-----~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~-~~ 295 (412)
T 1vkz_A 228 NTGGMGSWGPVEIPSDT-----IKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYNVRLGDP-ET 295 (412)
T ss_dssp ECSCSEEEECCCCCHHH-----HHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTT-HH
T ss_pred CCCCceEEECCCCCHHH-----HHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEecCCCCC-cc
Confidence 00000 0122222221 346789999999999 44 56679999985 34 8999999999866 43
No 55
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.50 E-value=1.8e-13 Score=135.89 Aligned_cols=177 Identities=12% Similarity=0.206 Sum_probs=120.0
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
.|++++ .++++++.+.||..+.++|+++ +||+|++. .+. +.+++.+.+ ..++||+|+||..+. +
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~g~---g 163 (451)
T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALA--REIGYPVLLKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHH--HHHCSSEEEEECSSS---S
T ss_pred CCCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC---C
Confidence 478766 7799999999999999999976 89999986 453 222222222 347899999998854 4
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCccccCccCCc
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAG 238 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~slp~~~~~~~~~~~g 238 (343)
|.+|.++.++++|.+. +.++++||||+ +++++.|.++++ ++... .|.. + +. .....
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~----~~~~~ 236 (451)
T 1ulz_A 164 GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-IQ----RRNQK 236 (451)
T ss_dssp CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE----ETTEE
T ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-cc----ccccc
Confidence 7799999999887642 46899999996 247999988864 34332 2221 0 00 00000
Q ss_pred eeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
.+. ..+. .+++.. .+.+.++|.++.++||+.- +++|++++. +| ++||+|||.-||-.
T Consensus 237 ~~~----------~~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 237 LVE----------IAPSLILTPEK-----REYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp EEE----------EESCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred cee----------ECCcccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 000 0011 122111 3567899999999999984 569999975 35 69999999988754
No 56
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.49 E-value=1e-13 Score=141.53 Aligned_cols=215 Identities=14% Similarity=0.111 Sum_probs=132.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChhhHHHHhcCHHHHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L 123 (343)
..+.++++|++.|++.+..-... + . +. ..+.+..++ .|++++ .++++++.+.||..+.++|
T Consensus 111 d~~~ii~~a~~~~~daI~pg~gf-l--------------s-E~-~~~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~ll 172 (540)
T 3glk_A 111 NVELIVDIAKRIPVQAVWAGWGH-A--------------S-EN-PKLPELLCK-NGVAFLGPPSEAMWALGDKIASTVVA 172 (540)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSG-G--------------G-GC-THHHHHHHH-TTCEESSCCHHHHC---CHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCEEEeCCCc-c--------------c-cC-HHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHH
Confidence 45678888888888765322111 1 1 11 112222222 488888 8999999999999999999
Q ss_pred HhccccCCCCCccCCcEEE--E--ecC---------------------CCCchHHH-HhcCCCCcEEEecCCCCCCCCce
Q 019319 124 ADMNLSNSYGKVDVPRQLV--I--ERD---------------------ASSIPDVV-LKAGLTLPLVAKPLVADGSAKSH 177 (343)
Q Consensus 124 ~~~~l~~~~~~I~~P~~~~--~--~~~---------------------~~~~~~~l-~~~~l~fP~VvKp~~a~GS~~sh 177 (343)
++. +||+|++.. + ... ..+..+.. ....++||+|+||..++ +|.
T Consensus 173 ~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~gg---GG~ 242 (540)
T 3glk_A 173 QTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGG---GGK 242 (540)
T ss_dssp HHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC------
T ss_pred HHc-------CCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCC---CCC
Confidence 976 899999865 0 000 11111111 12358999999998854 478
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCE---EEE-EEEe-cCCCCccccCccCCceeeec
Q 019319 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFP 243 (343)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~-~~R~-slp~~~~~~~~~~~g~~~~~ 243 (343)
+|.++.++++|.+. +.++++||||+ +++.+.|-|++|. ++. ..|. +... .+
T Consensus 243 Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d~~G~vv~l~~rd~s~qr--------------~~ 307 (540)
T 3glk_A 243 GIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRDCSIQR--------------RH 307 (540)
T ss_dssp -EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEECTTSCEEEEEEEEEEEC-----------------
T ss_pred CEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeceeeeeee--------------cc
Confidence 99999999887652 56899999995 2399999999863 333 2332 2110 01
Q ss_pred ccccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 244 RVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 244 ~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
..... ..+.. +++.. .+.+.++|.++.+++|+. .+++|++.+. +| ++|++|||.=|+-.
T Consensus 308 ~k~ie---~~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~VEf~~d~-dg-~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 308 QKIVE---EAPATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SFHFLELNPRLQVE 368 (540)
T ss_dssp CCSEE---EESCTTSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEECSCCTT
T ss_pred cceEE---ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEEEECCCCCc
Confidence 00000 00111 12211 356889999999999995 4559999985 35 69999999999855
No 57
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.49 E-value=3.5e-13 Score=133.71 Aligned_cols=176 Identities=10% Similarity=0.157 Sum_probs=119.8
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCc-hHHHHhcCCCCcEEEecCCCCCCC
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSA 174 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~-~~~l~~~~l~fP~VvKp~~a~GS~ 174 (343)
.|++++ .++++++.+.||..+.+.|+++ +||+|++. .+. +.+++ .+.+ ..++||+|+||..+.
T Consensus 98 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~~g~PvvvKp~~g~--- 164 (449)
T 2w70_A 98 SGFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIA--KRIGYPVIIKASGGG--- 164 (449)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHH--HHHCSSEEEEETTCC---
T ss_pred cCCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHH--HHhCCcEEEEECCCC---
Confidence 477765 5799999999999999999987 89999986 553 22223 2222 347899999998854
Q ss_pred CceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCccccCccCC
Q 019319 175 KSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSA 237 (343)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~slp~~~~~~~~~~~ 237 (343)
+|.+|.++.++++|.+. +.++++||||+ +++.+.|.++++ ++... .|.. + .. . .
T Consensus 165 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~-~-~~----~-~- 235 (449)
T 2w70_A 165 GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDC-S-MQ----R-R- 235 (449)
T ss_dssp TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE----E-T-
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceec-c-cc----c-C-
Confidence 47789999999887642 56899999996 348899888863 34433 3211 0 00 0 0
Q ss_pred ceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
...... ..+. .+++.. .+.+.++|.++.++||+. ++++|++++. | ++||+|||.-|+-.
T Consensus 236 ~~~~~~--------~~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R~~~~ 296 (449)
T 2w70_A 236 HQKVVE--------EAPAPGITPEL-----RRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTRIQVE 296 (449)
T ss_dssp TEEEEE--------EESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECSCCTT
T ss_pred Ccceee--------eCCcccCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECCCCcc
Confidence 000000 0011 122211 356789999999999996 4569999985 3 69999999988744
No 58
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.48 E-value=3.7e-13 Score=133.83 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=115.5
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCc-EEEecCCCCCCCCc
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKS 176 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~GS~~s 176 (343)
.|++++ .++++++.+.||..+.++|+++ +||+|++..+.+ .+++.+.+ ..++|| +|+||..+. +|
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFI--LSADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHH--HHCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhCCCCeEEEEeCCCC---CC
Confidence 478888 8999999999999999999976 899999998852 22232222 358999 999997753 46
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEEC--CEEEEE--EEecCCCCccccCccCCce
Q 019319 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGV 239 (343)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG--~~v~~~--~R~slp~~~~~~~~~~~g~ 239 (343)
.+|.++.++++|.+. ..++++||||+ |+++.|.+++ +.+... .|..-+..+ ++ .+
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~~~~-~~----~~- 249 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKRLLE-GD----GG- 249 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEEEET-TT----EE-
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeecccccC-CC----CC-
Confidence 899999999887642 26899999996 8999998884 323322 111000000 00 00
Q ss_pred eeecccccccccCCCCC-CCccccCCCChHHHH-HHHHHHHHHh---CC---cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 019319 240 FRFPRVSCAAASADDAD-LDPCVAELPPRPLLE-RLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGE 311 (343)
Q Consensus 240 ~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~-~lA~~l~~~l---Gl---~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (343)
.++. . .+. ..+.. ++++. .+.+. ++|.++.++| |+ .++++|++++. +| +||+|||.-||-
T Consensus 250 ~~~g--~-~~~-~~P~~~l~~~~-----~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~~~ 317 (452)
T 2qk4_A 250 PNTG--G-MGA-YCPAPQVSNDL-----LLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKVLEFNCRFGD 317 (452)
T ss_dssp EEEE--E-EEE-EESCTTCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEEEEEESSCCT
T ss_pred CCCC--C-cee-eccCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEeccCCC
Confidence 0000 0 000 01121 22111 23343 6777888776 44 46779999985 34 899999999985
Q ss_pred c
Q 019319 312 V 312 (343)
Q Consensus 312 ~ 312 (343)
.
T Consensus 318 ~ 318 (452)
T 2qk4_A 318 P 318 (452)
T ss_dssp T
T ss_pred c
Confidence 4
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.45 E-value=1.6e-13 Score=143.57 Aligned_cols=228 Identities=12% Similarity=0.146 Sum_probs=142.3
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc--------------------------------CCCccEEEEccCc-hhHHHHH
Q 019319 45 LQPKLEGLARNKGILFVAIDQNRPLSD--------------------------------QGPFDIVLHKLTG-KEWRQIL 91 (343)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~ID~~~~l~~--------------------------------q~~fDvilhK~t~-~~~~~~l 91 (343)
+..+++++|+++|+..+.++.+..-.. ....|+|+.-... .+.. .+
T Consensus 39 ia~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~-~~ 117 (675)
T 3u9t_A 39 IACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENA-DF 117 (675)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCH-HH
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccCH-HH
Confidence 355789999999999999965421100 0133444432110 0121 22
Q ss_pred HHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCCchHHHHhcCCCCcEEEecCC
Q 019319 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLV 169 (343)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (343)
.+..+ ..|++++ .++++++.+.||..+.++|.++ +||+|++... -.+.+++.+. ...++||+|+||..
T Consensus 118 a~~le-~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~--a~~igyPvvvKp~~ 187 (675)
T 3u9t_A 118 ARACE-EAGLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRRE--AGRIGYPVLLKAAA 187 (675)
T ss_dssp HHHHH-TTTCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHH--HHHSCSSBCCBCCC
T ss_pred HHHHH-HcCCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHH--HHhCCCcEEEEECC
Confidence 22222 2477776 7899999999999999999976 8999987652 1233333332 23589999999988
Q ss_pred CCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEe-cCCCCccc
Q 019319 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQ 231 (343)
Q Consensus 170 a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~~-~R~-slp~~~~~ 231 (343)
++ +|.+|.++.++++|.+. +.++++|+||+. .+.+-|-|++| +++.. .|. |... .
T Consensus 188 G~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr---~ 260 (675)
T 3u9t_A 188 GG---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQR---R 260 (675)
T ss_dssp ---------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBS---S
T ss_pred CC---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceee---c
Confidence 54 57899999999887652 357999999962 37888888865 34433 432 2110 0
Q ss_pred cCccCCceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCC
Q 019319 232 DLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFP 309 (343)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~~ViDVN~fP 309 (343)
...... .+ +. .+++.. .+.+.++|.++.+++|+ ..+++|++.+. +| ++|++|||.=|
T Consensus 261 ----~qk~ie---------~~-Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~ 319 (675)
T 3u9t_A 261 ----HQKVVE---------EA-PAPGLGAEL-----RRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRL 319 (675)
T ss_dssp ----SSBCEE---------EE-SCSSCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSC
T ss_pred ----cceEEE---------EC-CCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEeccccc
Confidence 000000 00 11 122221 35688999999999999 56779999985 45 68999999999
Q ss_pred CC
Q 019319 310 GE 311 (343)
Q Consensus 310 g~ 311 (343)
+-
T Consensus 320 ~~ 321 (675)
T 3u9t_A 320 QV 321 (675)
T ss_dssp CT
T ss_pred cC
Confidence 73
No 60
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.44 E-value=3.1e-13 Score=139.18 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=122.4
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEE--E--ec--------------------C-CCCchH
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--I--ER--------------------D-ASSIPD 152 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~--~~--------------------~-~~~~~~ 152 (343)
.|++++ .++++++.+.||..+.+++++. +||+|++.. + .. . ..+..+
T Consensus 163 ~Gi~~iGp~~~ai~~~~DK~~ak~ll~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ee 235 (587)
T 3jrx_A 163 NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235 (587)
T ss_dssp TTCEESSCCHHHHHHHCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHH
T ss_pred CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCeecccccccccccccccccccccchhhccccccCCHHH
Confidence 588888 8999999999999999999976 899998764 0 00 0 111111
Q ss_pred HH-HhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCE---EEE
Q 019319 153 VV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV 219 (343)
Q Consensus 153 ~l-~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~ 219 (343)
.. ....++||+|+||..++ +|.+|.++.++++|.+. +.++++|+||+ +++.+-|-|++|. ++.
T Consensus 236 a~~~a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D~~G~vv~ 311 (587)
T 3jrx_A 236 GLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVS 311 (587)
T ss_dssp HHHHHHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECSSSCEEE
T ss_pred HHHHHHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEE
Confidence 11 12458999999998854 47799999999887652 57899999995 2499999999873 332
Q ss_pred -EEEe-cCCCCccccCccCCceeeecccccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCC
Q 019319 220 -VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 295 (343)
Q Consensus 220 -~~R~-slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~ 295 (343)
..|. +... .+..... ..++. +++.. .+.+.++|.++++++|.. .++||++.+.
T Consensus 312 l~~rd~siqr--------------r~qk~ie---~aPa~~l~~~~-----~~~i~~~A~~~a~alGy~G~~~VEfl~d~- 368 (587)
T 3jrx_A 312 LFGRDCSIQR--------------RHQKIVE---EAPATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ- 368 (587)
T ss_dssp EEEEEEEEES--------------SSCEEEE---EESCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECS-
T ss_pred Eeeeeccccc--------------cccceeE---ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEeC-
Confidence 2332 2110 0100000 00111 12221 356889999999999996 4459999975
Q ss_pred CCCeEEEEEecCCCCCc
Q 019319 296 TRDQFYVIDINYFPGEV 312 (343)
Q Consensus 296 ~g~~~~ViDVN~fPg~~ 312 (343)
+| ++|++|||.=|+-.
T Consensus 369 dG-~~yflEINpRl~~e 384 (587)
T 3jrx_A 369 DG-SFHFLELNPRLQVE 384 (587)
T ss_dssp SS-CEEEEEEESSCCTT
T ss_pred CC-CEEEEEEeCCCCCc
Confidence 35 69999999999855
No 61
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.42 E-value=2.2e-12 Score=141.79 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=141.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCc---------------------------------CCCccEEEEccCc-hhHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLSD---------------------------------QGPFDIVLHKLTG-KEWRQIL 91 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~~---------------------------------q~~fDvilhK~t~-~~~~~~l 91 (343)
..+++++|+++|+..+.++.+..-.. +...|+|+.-... .+.. .+
T Consensus 16 a~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~~-~~ 94 (1150)
T 3hbl_A 16 AIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENE-QF 94 (1150)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTCH-HH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccccH-HH
Confidence 34688899999999999876431110 0134555533110 1121 22
Q ss_pred HHHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecC
Q 019319 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPL 168 (343)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (343)
.+..++ -|++++ .++++++.+.||..+.++++++ +||+|++. .+. +.+++.+ ....++||+|+||.
T Consensus 95 a~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~--~a~~iGyPvVVKP~ 163 (1150)
T 3hbl_A 95 ARRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKE--FAEEAGFPLMIKAT 163 (1150)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTT--TGGGTCSSEEEECC
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHH--HHHHcCCCEEEEeC
Confidence 222322 378877 8899999999999999999976 89999987 453 2223322 23468999999998
Q ss_pred CCCCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCcc
Q 019319 169 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTK 230 (343)
Q Consensus 169 ~a~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~-~~~R~-slp~~~~ 230 (343)
.++ +|.+|.++.++++|.+. +.++++|+||+ +.+.+-|-|+++. ++ ...|. +...
T Consensus 164 ~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr--- 236 (1150)
T 3hbl_A 164 SGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR--- 236 (1150)
T ss_dssp C----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec---
Confidence 753 57899999999887542 35799999995 2378999888763 33 33332 2110
Q ss_pred ccCccCCceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCC
Q 019319 231 QDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 308 (343)
Q Consensus 231 ~~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~G-vDvi~~~~~g~~~~ViDVN~f 308 (343)
... ... . ..+. .+++.. .+.+.++|.++.+++|+.-+| +|++.+.+ ++|+||||.=
T Consensus 237 -----~~~-k~~---e-----~~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR 294 (1150)
T 3hbl_A 237 -----RHQ-KVV---E-----VAPSVGLSPTL-----RQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPR 294 (1150)
T ss_dssp -----SSC-EEE---E-----ESSCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECS
T ss_pred -----cCc-eeE---E-----ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCC
Confidence 000 000 0 0011 222221 356889999999999997665 99999863 6999999999
Q ss_pred CCCc
Q 019319 309 PGEV 312 (343)
Q Consensus 309 Pg~~ 312 (343)
|+-.
T Consensus 295 ~~g~ 298 (1150)
T 3hbl_A 295 VQVE 298 (1150)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9744
No 62
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.41 E-value=1.5e-12 Score=143.31 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=84.9
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
.|++++ .++++++.+.||..+.+++.++ +||+|++. .+. +.+++.+. ...++||+|+||..+. +
T Consensus 117 ~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~--a~~igyPvVVKp~~g~---G 183 (1165)
T 2qf7_A 117 AGIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKM--AAAIGYPVMLKASWGG---G 183 (1165)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC---------------------------------------
T ss_pred cCCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHH--HHhcCCCEEEEeCCCC---C
Confidence 477775 6789999999999999999976 89999998 453 22233221 2458999999998854 4
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~-~R~-slp~~~~~~~~~~~ 237 (343)
|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. ++.. .|. +.. ...
T Consensus 184 G~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~s~~--------r~~ 254 (1165)
T 2qf7_A 184 GRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDCSVQ--------RRN 254 (1165)
T ss_dssp ------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEEEEE--------ETT
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecccce--------ecc
Confidence 7789999999887642 25799999996 4789999999863 4332 331 110 000
Q ss_pred ceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+.. ... .+. .+++.. .+.+.++|.++.+++|+.-+ ++|++++..+| ++|+||||.-+|..
T Consensus 255 ~~~--------~e~-~Pa~~l~~~~-----~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 255 QKV--------VER-APAPYLSEAQ-----RQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPRIQVE 316 (1165)
T ss_dssp EEE--------EEE-ESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred cce--------EEe-cccccCCHHH-----HHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcCCCCC
Confidence 000 000 011 122211 35678999999999999854 49999983245 79999999999865
No 63
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.40 E-value=1.6e-12 Score=132.86 Aligned_cols=178 Identities=14% Similarity=0.155 Sum_probs=117.0
Q ss_pred ceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEE-----ecC-----------------CCCchHHHH-h
Q 019319 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 156 (343)
Q Consensus 101 v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-----~~~-----------------~~~~~~~l~-~ 156 (343)
++++ .++++++.+.||..+.++++++ +||+|++..+ ..+ ..+..+... .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 6555 4577999999999999999976 8999987643 000 011121111 2
Q ss_pred cCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECC---EEEE-EEEe
Q 019319 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKV-VRRF 223 (343)
Q Consensus 157 ~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l---------~~p~v~QEFI~h~g~~~Kv~VIG~---~v~~-~~R~ 223 (343)
..++||+|+||..+. +|.+|.++.++++|.+. ..++++||||+ +|+.+.|.++++ +++. ..|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 357899999998854 47799999999887652 56899999997 468999988875 3332 2221
Q ss_pred -cCCCCccccCccCCceeeecccccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeE
Q 019319 224 -SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQF 300 (343)
Q Consensus 224 -slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl-~l~GvDvi~~~~~g~~~ 300 (343)
+..... ..... .+ +.. +++.. .+.+.++|.++.++||+ +.+++|++++..+| ++
T Consensus 307 ~~~~~~~-------~k~~~---~~-------P~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~ 363 (554)
T 1w96_A 307 CSVQRRH-------QKIIE---EA-------PVTIAKAET-----FHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KF 363 (554)
T ss_dssp EEEEETT-------EEEEE---EE-------SCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CE
T ss_pred eeeEeec-------cceee---eC-------CCcCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CE
Confidence 111000 00000 00 111 11111 35688999999999999 56679999973244 68
Q ss_pred EEEEecCCCCCc
Q 019319 301 YVIDINYFPGEV 312 (343)
Q Consensus 301 ~ViDVN~fPg~~ 312 (343)
||+|||.=+|-.
T Consensus 364 ~~iEiN~R~~g~ 375 (554)
T 1w96_A 364 YFLELNPRLQVE 375 (554)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEeeCCCCcc
Confidence 999999977643
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.37 E-value=1.8e-12 Score=143.02 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=107.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC--------------------------------cCCCccEEEEccCc-hhHHHHHH
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLS--------------------------------DQGPFDIVLHKLTG-KEWRQILE 92 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~--------------------------------~q~~fDvilhK~t~-~~~~~~l~ 92 (343)
..+++++|+++|+.++.++.+..-. +....|+|+.-... .+.. .+.
T Consensus 43 a~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~-~~a 121 (1236)
T 3va7_A 43 AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENA-DFS 121 (1236)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCH-HHH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCccccccH-HHH
Confidence 4578999999999999985432100 01235666543211 0111 222
Q ss_pred HHHHhCCCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcE-EEEecCCCCchHHHHhcCCCCcEEEecCCC
Q 019319 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ-LVIERDASSIPDVVLKAGLTLPLVAKPLVA 170 (343)
Q Consensus 93 ~~~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~-~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a 170 (343)
+..+ ..|++++ .++++++.+.||..+.++|+++ +||+|++ .++. +.+++.+ ....++||+|+||..+
T Consensus 122 ~~le-~~Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~--~a~~iGyPvVVKP~~G 190 (1236)
T 3va7_A 122 DRCS-QENIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKE--VAKKLEYPVMVKSTAG 190 (1236)
T ss_dssp HHHH-TTTCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC--------------------------------
T ss_pred HHHH-HCCCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHH--HHHHcCCCEEEEeCCC
Confidence 3332 2578776 8899999999999999999976 8999884 4443 3333332 2346899999999774
Q ss_pred CCCCCceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCcccc
Q 019319 171 DGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQD 232 (343)
Q Consensus 171 ~GS~~sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~~~-~R~-slp~~~~~~ 232 (343)
+ +|.+|.++.++++|.+. +.++++||||+ +++.+.|.|++|. +... .|. +..
T Consensus 191 g---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~q------ 260 (1236)
T 3va7_A 191 G---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQ------ 260 (1236)
T ss_dssp ----------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEE------
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeee------
Confidence 3 57899999999887642 34799999996 2489999999762 3322 221 110
Q ss_pred CccCCceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 233 LSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 233 ~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
..+... .. ..+. .++++. .+.+.++|.++.+++|+. .+++|++++.++| ++|+||||.=++
T Consensus 261 --------r~~~k~--~e-~~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl~ 323 (1236)
T 3va7_A 261 --------RRNQKV--IE-ETPAPNLPEAT-----RAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARLQ 323 (1236)
T ss_dssp --------ETTEEE--EE-EESCSSCCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred --------ecCcce--EE-EcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCCC
Confidence 000000 00 0011 122222 356889999999999996 6669999986444 799999999885
No 65
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.33 E-value=2.9e-12 Score=134.22 Aligned_cols=176 Identities=15% Similarity=0.233 Sum_probs=83.9
Q ss_pred CCceee-ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCC
Q 019319 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (343)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~ 175 (343)
-|++++ .++++++.+.||..+.++|+++ +||+|++. .+. +.+++.+ ....++||+|+||..++ +
T Consensus 98 ~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~--~a~~igyPvVvKp~~gg---g 164 (681)
T 3n6r_A 98 EGVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVK--ISNQIGYPVMIKASAGG---G 164 (681)
T ss_dssp TTCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-------------------------------------
T ss_pred cCCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHH--HHHhcCCcEEEEECCCC---C
Confidence 478887 8899999999999999999975 89999975 343 2333332 23468999999998743 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCccccCccCC
Q 019319 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSA 237 (343)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG~~---v~-~~~R~-slp~~~~~~~~~~~ 237 (343)
+.+|.++.++++|.+. +.++++||||+ +++.+.|.|++|. +. ...|. |... .
T Consensus 165 gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~-g~rei~V~v~~d~~G~vv~l~~rd~s~qr--------~- 234 (681)
T 3n6r_A 165 GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVT-QPRHIEIQVLCDSHGNGIYLGERECSIQR--------R- 234 (681)
T ss_dssp --------------------------------------CC-SCEEEEEEEECCSSSCCEEEEEEECCCEE--------T-
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccC-CCcEEEEEEEEeCCCCEEEEeeeecceec--------c-
Confidence 7899999999887653 34799999996 2389999999863 23 22332 2110 0
Q ss_pred ceeeecccccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCCCc
Q 019319 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGEV 312 (343)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (343)
+... .. ..+. .+++.. .+.+.++|.++.+++|+.- +.+|++.+. +| ++|++|||.=|+-.
T Consensus 235 -----~~k~--~e-~~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 235 -----NQKV--VE-EAPSPFLDEAT-----RRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTRLQVE 296 (681)
T ss_dssp -----TEEC--EE-EESCSSCCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECSCCTT
T ss_pred -----CccE--EE-ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccccCCC
Confidence 0000 00 0011 122221 3567899999999999974 459999985 45 68999999999644
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.02 E-value=2.2e-09 Score=102.78 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=120.0
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC--------c---CCC-c-cEEEEccCc-----hhHHHH--HHHHHHhCCCceeeC
Q 019319 46 QPKLEGLARNKGILFVAIDQNRPLS--------D---QGP-F-DIVLHKLTG-----KEWRQI--LEEYRQTHPEVTVLD 105 (343)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~ID~~~~l~--------~---q~~-f-DvilhK~t~-----~~~~~~--l~~~~~~~p~v~ViD 105 (343)
..-++.+|++.|+.++.+|.+.+-. + ... + | +-+..+ .++... ++.. +..++++..
T Consensus 13 ~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d--l~~~~dvitpe~e~v~~~~l~~l--e~~~~p~~p 88 (320)
T 2pbz_A 13 SLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS--ILNDDGIVVPHGSFVAYLGIEAI--EKAKARFFG 88 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC--TTCCSSBCCCBTTHHHHSCHHHH--HTCCSCCBS
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH--HHhcCCEEEecccchhHHHHHHH--HHcCCCcCC
Confidence 3457889999999999999874221 1 112 2 1 111111 122211 1121 356889999
Q ss_pred hhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeCh
Q 019319 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (343)
Q Consensus 106 p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~ 185 (343)
+.+++....||...-+.|.++ |||+|++.. .+++ .++||+|+||..+ + +|+|+.++.+
T Consensus 89 ~~~~l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g--~-ggkG~~~v~~- 146 (320)
T 2pbz_A 89 NRRFLKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGP--R-GGSGHFIVEG- 146 (320)
T ss_dssp CSSGGGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-
T ss_pred CHHHHHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCC--C-CCCCEEEECh-
Confidence 999999999999877888887 899999872 2221 4899999999884 4 6899999999
Q ss_pred hhHhcc----CCCeEEEecccCCCcEEEE--E--EECCEEEE-EEEecCCCCccccCccCCceeeeccc----ccccccC
Q 019319 186 YSLKKL----EPPLVLQEFVNHGGVLFKV--Y--IVGEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRV----SCAAASA 252 (343)
Q Consensus 186 ~~L~~l----~~p~v~QEFI~h~g~~~Kv--~--VIG~~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~----s~~~~~~ 252 (343)
++|... +.++++||||+ |..+.+ | ++-+++.+ ..+.-+-+ . +|.+..+.+ +-.|.
T Consensus 147 eel~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~-~-------~g~~~~p~~~~~~~~~G~-- 214 (320)
T 2pbz_A 147 SELEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLI-A-------DGNARWPVKPLPYTIVGN-- 214 (320)
T ss_dssp EECSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEET-T-------CSSSSSCCSCCCCCEEEE--
T ss_pred HHHHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEE-E-------CCeeecccCCCceeeecC--
Confidence 988754 25899999996 655531 1 02222221 11111111 1 121111000 00000
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHh------C-CcEeEEEEEEeCCCCCeEEEEEecC-CCC
Q 019319 253 DDADLDPCVAELPPRPLLERLAKELRRQL------G-LRLFNLDIIREHGTRDQFYVIDINY-FPG 310 (343)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~l------G-l~l~GvDvi~~~~~g~~~~ViDVN~-fPg 310 (343)
.+..+.+.. .+.+.++|.++.++| | ...+++| + +. +| ++||+|||. |+|
T Consensus 215 ~P~~~~~~~-----~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 215 RAIALRESL-----LPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp EECEECGGG-----HHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred CCCccCHHH-----HHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 012121111 356789999999998 4 5677899 4 32 34 589999998 455
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.93 E-value=2.3e-08 Score=97.09 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=142.2
Q ss_pred ccHHHHHHHhhhhhccCCCccccCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCC---cCCCccEEE
Q 019319 3 MMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS---DQGPFDIVL 79 (343)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~---~q~~fDvil 79 (343)
+++++|.+-.++-|.. ..+||..-+- ...-++.+|+++|+.++.+|.+.+-. .....|-++
T Consensus 2 ~~~~~~~~~~~~~~~~----------~~~I~ilGs~------l~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~ 65 (361)
T 2r7k_A 2 ISKDEILEIFDKYNKD----------EITIATLGSH------TSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFI 65 (361)
T ss_dssp CCHHHHHHHHTTSCTT----------SCEEEEESST------THHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEE
T ss_pred CcHHHHHHHHHhcccc----------CCEEEEECcH------HHHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEE
Confidence 4677775544443321 2346666543 23348889999999999999884321 112223222
Q ss_pred -Ec-cCc---hhH-----------------HH--HHHHHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCc
Q 019319 80 -HK-LTG---KEW-----------------RQ--ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV 135 (343)
Q Consensus 80 -hK-~t~---~~~-----------------~~--~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I 135 (343)
.- ..+ ... .. .+... .+.-++++.-+..+++...||...-+.|+++ +|
T Consensus 66 ~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l-~~~~g~~v~g~~~a~~~e~~k~~~k~~l~~~-------GI 137 (361)
T 2r7k_A 66 YVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNV-ENSFLVPMFGNRRILRWESERSLEGKLLREA-------GL 137 (361)
T ss_dssp ECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHH-HHTCCSCBBSCGGGGGTTTCHHHHHHHHHHT-------TC
T ss_pred ECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHH-HHHcCCCcCCCHHHHHHhhhHHHHHHHHHHc-------Cc
Confidence 22 112 111 11 11121 2246788888888888889998877888876 89
Q ss_pred cCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhhHhcc------------C--CCeEEEecc
Q 019319 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------E--PPLVLQEFV 201 (343)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~L~~l------------~--~p~v~QEFI 201 (343)
|+|++ +. +. ..++||+|+||..+ + .++|+.++.+.+++.+. . .++++||||
T Consensus 138 ptp~~--~~-~~---------~e~~~PvVVK~~~~--a-~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl 202 (361)
T 2r7k_A 138 RVPKK--YE-SP---------EDIDGTVIVKFPGA--R-GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYV 202 (361)
T ss_dssp CCCCE--ES-SG---------GGCCSCEEEECSCC--C-C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECC
T ss_pred CCCCE--eC-CH---------HHcCCCEEEeeCCC--C-CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEecc
Confidence 99986 32 21 12369999998663 3 68999999999887542 1 469999999
Q ss_pred cCCCcEEEE---E-EECCEEE--EE-EEe-cCC----CCcccc-CccC-CceeeecccccccccCCCCCCCccccCCCCh
Q 019319 202 NHGGVLFKV---Y-IVGEAIK--VV-RRF-SLP----DVTKQD-LSTS-AGVFRFPRVSCAAASADDADLDPCVAELPPR 267 (343)
Q Consensus 202 ~h~g~~~Kv---~-VIG~~v~--~~-~R~-slp----~~~~~~-~~~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~ 267 (343)
+ |..+.+ | ++++++. .+ .|. +-. .+..++ +... ...|. -.|. .+..+++.. .
T Consensus 203 ~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v-----~~G~--~Pa~l~~~~-----~ 268 (361)
T 2r7k_A 203 V--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYV-----ITGN--IPVVIRESL-----L 268 (361)
T ss_dssp C--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEE-----EEEE--EECCCCGGG-----H
T ss_pred c--eEEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceE-----EecC--cCCcCCHHH-----H
Confidence 6 766641 1 1244322 22 221 100 000000 0000 00010 0000 022222222 4
Q ss_pred HHHHHHHHHHHHHh-------CCcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 019319 268 PLLERLAKELRRQL-------GLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (343)
Q Consensus 268 ~~~~~lA~~l~~~l-------Gl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (343)
+.+.++|.++.++| ....|+++++++. +| +++|+|||.=||
T Consensus 269 ~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~EIapR~g 316 (361)
T 2r7k_A 269 PQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFEMSARVD 316 (361)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEEEESSBC
T ss_pred HHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEEEEcCCCC
Confidence 67889999999998 3667789999864 34 689999999444
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.8e-11 Score=97.21 Aligned_cols=91 Identities=12% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeChhh
Q 019319 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (343)
Q Consensus 110 i~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~~~~ 187 (343)
+..++||..+.++|+++ +||+|++. .+. +.+++.+. ...++||+|+||..+. +|.++.++.++++
T Consensus 3 ~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~~~~~~~--~~~~~~P~vvKp~~~~---~~~gv~~v~~~~e 69 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKKA-------EVNTIPGFDGVVK-DAEEAVRI--AREIGYPVMIKASAGG---GGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCSTTCCCSS-------CCCCCSCCCSCBS-SHHHHHHH--HHHHCSSEEEEETTSC---CTTTCEEESSHHH
T ss_pred hhhhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHH--HHhcCCCEEEEECCCC---CCccEEEeCCHHH
Confidence 34678888888877754 89999987 553 22222221 2347899999998854 4678999999988
Q ss_pred Hhcc-------------CCCeEEEecccCCCcEEEEEEEC
Q 019319 188 LKKL-------------EPPLVLQEFVNHGGVLFKVYIVG 214 (343)
Q Consensus 188 L~~l-------------~~p~v~QEFI~h~g~~~Kv~VIG 214 (343)
|.+. +.++++||||+. .+++.|.|+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 7642 468999999962 3588887776
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.31 E-value=5.8e-06 Score=80.60 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=89.9
Q ss_pred HHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCC-ceeeChhhHHHHhcCHHHHHHHHHhcc
Q 019319 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE-VTVLDPPYAIQHLHNRQSMLQCVADMN 127 (343)
Q Consensus 49 l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~-v~ViDp~~ai~~~~dR~~~~~~L~~~~ 127 (343)
..+..+++|. ...++.+ -..||++..-....-+ +. ...+|+ .-.||-......+..|..+.+.|.+..
T Consensus 20 V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~-~~----l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~ 88 (380)
T 3tig_A 20 VAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPF-GR----LGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP 88 (380)
T ss_dssp HHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCG-GG----SSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH
T ss_pred HHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCH-HH----hccCCCcceEEeecCCcccccccHHHHHHHHHhh
Confidence 4556777884 2223332 3468998863322111 00 112355 357888888889999999999886521
Q ss_pred ccCCCCCccCCcEEEE-ecCC--------------------CCchHHH------HhcCCCCcEEEecCCCCCCCCceeeE
Q 019319 128 LSNSYGKVDVPRQLVI-ERDA--------------------SSIPDVV------LKAGLTLPLVAKPLVADGSAKSHELS 180 (343)
Q Consensus 128 l~~~~~~I~~P~~~~~-~~~~--------------------~~~~~~l------~~~~l~fP~VvKp~~a~GS~~sh~m~ 180 (343)
... ...=..|++.++ -.+. ++..+.+ ...+-+.++|+||.. || .+.|+.
T Consensus 89 ~~~-~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~--~s-rG~GI~ 164 (380)
T 3tig_A 89 ELT-ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSS--GA-KGEGIL 164 (380)
T ss_dssp HHH-TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESC--C-----CCB
T ss_pred hcc-cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCc--cC-CCCCEE
Confidence 001 112347777776 2210 1111111 124567899999976 44 789999
Q ss_pred EEeChhhHhcc----CCCeEEEecccC------CC--cEEEEEEEC
Q 019319 181 LAYDQYSLKKL----EPPLVLQEFVNH------GG--VLFKVYIVG 214 (343)
Q Consensus 181 iv~~~~~L~~l----~~p~v~QEFI~h------~g--~~~Kv~VIG 214 (343)
++.+.+++.+. ..++|+|+||.. +| .|+|+||+-
T Consensus 165 l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 165 ISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp CCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred EeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 99999887653 678999999976 45 488999883
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.27 E-value=3.4e-07 Score=83.30 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=68.5
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCC--CCCCceeeEE-EeChhhHh
Q 019319 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 189 (343)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~--GS~~sh~m~i-v~~~~~L~ 189 (343)
.+||..+.++|++. |||+|++.++.+ .+++.+ ....++||+|+||..++ |-..+.++.+ +.+++++.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~-~~ea~~--~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKT-LDEALE--YAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESS-HHHHHH--HHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHH--HHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 47999999999965 999999998852 222222 12358999999998741 0013667777 79998876
Q ss_pred cc----------------CCCeEEEecccCCCcEEEEEEECCE
Q 019319 190 KL----------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 190 ~l----------------~~p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
+. ...+++||||+ +|+.+-|.+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 42 15799999997 4889999988875
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.49 E-value=0.00012 Score=71.86 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=64.2
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCC-CCCCCceeeEEEeChhhHhcc----
Q 019319 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL---- 191 (343)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~GS~~sh~m~iv~~~~~L~~l---- 191 (343)
+..-++|++. |||+|++.++.+ .+++.+ ....++||+|+||... .|...+.+|.++.+++++.+.
T Consensus 6 ~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~--aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILARY-------GVPVPPGKVAYT-PEEAKR--IAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHHT-------TCCCCCEEEESS-HHHHHH--HHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------CCCCCCeEEECC-HHHHHH--HHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 4556777765 999999999853 222322 1235789999999772 233356799999999887642
Q ss_pred ---------CCCeEEEecccCCCcEEEEEEECCE
Q 019319 192 ---------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 192 ---------~~p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
...+++|||+++ |+.+-+.++.|.
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~ 108 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDR 108 (397)
T ss_dssp TTCEETTEECCCEEEEECCCE-EEEEEEEEEEET
T ss_pred hhhhccCCccceEEEEEeecC-CeeEEEEEEecC
Confidence 247999999974 889999988875
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.42 E-value=0.00017 Score=70.57 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=66.3
Q ss_pred CHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCc-EEEecCCCC-CCCCceeeEEEeChhhHhcc-
Q 019319 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKKL- 191 (343)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~-GS~~sh~m~iv~~~~~L~~l- 191 (343)
+.+.+-++|++. +||+|++.++.+ .+++.+ ....++|| +|+||.... |-..+.+|.++.+++++.+.
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~--aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFARY-------GLPAPVGYACTT-PREAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CcCCCCeeEECC-HHHHHH--HHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 566777888865 999999998852 222322 12358999 999998732 22257799999999876541
Q ss_pred ----C---------------CCeEEEecccCCCcEEEEEEECCEE
Q 019319 192 ----E---------------PPLVLQEFVNHGGVLFKVYIVGEAI 217 (343)
Q Consensus 192 ----~---------------~p~v~QEFI~h~g~~~Kv~VIG~~v 217 (343)
. .++++|+|+++ |+.+-|.++.|..
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 1 26999999974 7899888888753
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.20 E-value=0.00038 Score=68.16 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=63.4
Q ss_pred CHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCC-cEEEecCCCCCC-CCc-------eeeEEEeCh
Q 019319 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGS-AKS-------HELSLAYDQ 185 (343)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~GS-~~s-------h~m~iv~~~ 185 (343)
+.+.+-++|++. +||+|++.++.+ .+++.+. ...++| |+|+||...+|. -.+ -+|.++.++
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s-~~ea~~~--a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSDN-------GVKVQRFFVADT-ANEALEA--AKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHH--HHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 445667778865 999999998853 3233322 234899 899999754433 112 569999999
Q ss_pred hhHhcc-----C---------------CCeEEEecccCCCcEEEEEEECCE
Q 019319 186 YSLKKL-----E---------------PPLVLQEFVNHGGVLFKVYIVGEA 216 (343)
Q Consensus 186 ~~L~~l-----~---------------~p~v~QEFI~h~g~~~Kv~VIG~~ 216 (343)
+++.+. . ..+++|||++ .|+.+-+.++.|+
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEcc
Confidence 887542 1 2489999997 4889988888876
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.10 E-value=0.0042 Score=64.14 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=105.1
Q ss_pred EEEEEecccccccccchHHHhhhhhcceEEEEee-CCCCCC--cC--------CCccEEEEccCchhHH-HHHH------
Q 019319 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAID-QNRPLS--DQ--------GPFDIVLHKLTGKEWR-QILE------ 92 (343)
Q Consensus 31 ~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID-~~~~l~--~q--------~~fDvilhK~t~~~~~-~~l~------ 92 (343)
+|..+..+--.......-|.++|++.|++...++ +.+ +. .. .++|+|+ |+..-+|. ..+.
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~d-l~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~ 458 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDE-LGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDRE 458 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTT-CEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---C
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHh-EEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccc
Confidence 4544433322233344558889999999999998 665 32 12 2566666 56543332 1210
Q ss_pred ---------------HHHH--hCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHH
Q 019319 93 ---------------EYRQ--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL 155 (343)
Q Consensus 93 ---------------~~~~--~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~ 155 (343)
++.. +..++.+|+|+.++. +.||..+.-+.+ +. + .++ -.+++. ++ .+. . +.
T Consensus 459 ~~~~~~~~g~~~~g~~ll~~l~~~~v~iieP~~~~l-lsNKailalLw~-l~--p-~hp-~LLpT~-f~--~~~--~-l~ 526 (619)
T 2io8_A 459 FAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVI-PGNKAILPILWS-LF--P-HHR-YLLDTD-FT--VND--E-LV 526 (619)
T ss_dssp CSSCCCCSCCSSCCCCHHHHHTCTTCEEESCGGGGT-TTSTTHHHHHHH-HS--T-TCT-TCCCEE-SS--CCH--H-HH
T ss_pred cccccccccCccchHHHHHHHHhCCCEEECHHHHHH-hhhHHHHHHHHH-hC--C-CCC-CCCCee-ec--CCc--c-cc
Confidence 2332 456899999999987 899987544433 31 1 112 133444 21 111 1 11
Q ss_pred hcCCCCcEEEecCCCCCCCCceeeEEEeC-hhhHhcc-----CCCeEEEecccCCCcE-----EEEEEECCEEEEE-EEe
Q 019319 156 KAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSLKKL-----EPPLVLQEFVNHGGVL-----FKVYIVGEAIKVV-RRF 223 (343)
Q Consensus 156 ~~~l~fP~VvKp~~a~GS~~sh~m~iv~~-~~~L~~l-----~~p~v~QEFI~h~g~~-----~Kv~VIG~~v~~~-~R~ 223 (343)
.. ..|.||+.+ . ++.+|.++.. .+.+.+. +.++|+|||++-+..+ +-+|++|++.... .|.
T Consensus 527 ~~----~yV~KPi~g--R-eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~ 599 (619)
T 2io8_A 527 KT----GYAVKPIAG--R-CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_dssp HH----CEEEEETTC--C-TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred cC----CEEEccCCC--C-CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEec
Confidence 11 599999994 3 6778999876 2222221 4679999999987666 8899999998855 777
Q ss_pred c
Q 019319 224 S 224 (343)
Q Consensus 224 s 224 (343)
+
T Consensus 600 ~ 600 (619)
T 2io8_A 600 D 600 (619)
T ss_dssp E
T ss_pred C
Confidence 6
No 75
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=92.02 E-value=1.7 Score=45.07 Aligned_cols=157 Identities=11% Similarity=0.041 Sum_probs=82.5
Q ss_pred hHHHhhhhhcceEEEEee-CCCCCC--cC--------CCccEEEEccCchhHHHHH-------------------HHHHH
Q 019319 47 PKLEGLARNKGILFVAID-QNRPLS--DQ--------GPFDIVLHKLTGKEWRQIL-------------------EEYRQ 96 (343)
Q Consensus 47 ~~l~~~a~~~Gi~~v~ID-~~~~l~--~q--------~~fDvilhK~t~~~~~~~l-------------------~~~~~ 96 (343)
.-|.+.|++.|++...++ +.+ |. +. .++|+++ |+..-+|...- ..|..
T Consensus 413 ~yL~~~a~eaG~~t~~~~~i~d-L~~~~~G~l~D~~g~~Id~lf-KLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~ 490 (652)
T 2vob_A 413 LYCMQAAEAVGLEGKLCILFDE-FRFDDNGHVVDSDGVRVRNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLCD 490 (652)
T ss_dssp HHHHHHHHHTTCEEEEEETTTT-CEECTTSCEECTTSCBCCEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHH
T ss_pred HHHHHHHHHCCCcEEEecchhh-eEECCCCcEECCCCcEeeEEE-ecCCHHHHHHhhhhcccccccccccCccchhHHHH
Confidence 337778999999999987 654 32 11 3778877 67664442111 02322
Q ss_pred --hCC--CceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCC
Q 019319 97 --THP--EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (343)
Q Consensus 97 --~~p--~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (343)
... .+.+|+|+.++ .+.||.. +.+|.++.- . ++--.|.+ + +.+.. +... ..|.||+.+-
T Consensus 491 ~l~~~~~~v~~ieP~wk~-LlsNKai-LalLW~l~p--~-hp~LLpt~--f--~~~~~---~~~~----~yV~KPi~gR- 553 (652)
T 2vob_A 491 LLLGDDWEILYFEPMWKV-IPSNKAI-LPMIYHNHP--E-HPAILKAE--Y--ELTDE---LRKH----GYAKKPIVGR- 553 (652)
T ss_dssp HHSSSCTTSEEESCGGGG-TTTSTTH-HHHHHHHCT--T-CTTBCCEE--S--SCCHH---HHHH----CEEEEECC---
T ss_pred HHhcCCCceEEeChhHHH-hhcCHHH-HHHHHhccc--C-CCCCCchh--h--cCCCc---cccC----CeEeccCCCC-
Confidence 345 79999999664 5668865 445554311 1 12223332 2 11111 1111 5999999953
Q ss_pred CCCceeeEEEeChhh-Hhcc-----CCCeEEEecccCC-----CcEEEEEEECCEEEEE-EEec
Q 019319 173 SAKSHELSLAYDQYS-LKKL-----EPPLVLQEFVNHG-----GVLFKVYIVGEAIKVV-RRFS 224 (343)
Q Consensus 173 S~~sh~m~iv~~~~~-L~~l-----~~p~v~QEFI~h~-----g~~~Kv~VIG~~v~~~-~R~s 224 (343)
++.+|.|.....+ ..+. +.++|+|||++-+ -..+=+|++|++.... .|.+
T Consensus 554 --eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 554 --VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp ---------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred --CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 5678888754322 1221 5689999999842 3467899999998855 7775
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=91.66 E-value=0.095 Score=52.28 Aligned_cols=134 Identities=16% Similarity=0.278 Sum_probs=73.7
Q ss_pred CCccEEEEccCchhH--------------HHHHHHHHHhCCCceeeChhhHHHHhcCHHH--HHHHHHhccccCCCCCc-
Q 019319 73 GPFDIVLHKLTGKEW--------------RQILEEYRQTHPEVTVLDPPYAIQHLHNRQS--MLQCVADMNLSNSYGKV- 135 (343)
Q Consensus 73 ~~fDvilhK~t~~~~--------------~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~--~~~~L~~~~l~~~~~~I- 135 (343)
.++|+|+-|+.+. + ...++.|.+. .|.++|++.+- .+.||.. .+-.+.+.-+... .-+
T Consensus 268 ~~VDVIyRRvdd~-~lDpl~~~~dS~lGv~gLl~A~r~G--~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lgEe-~il~ 342 (474)
T 3n6x_A 268 KRVDVIYRRIDDD-FIDPLSFRPDSMLGVPGLLSVYRNG--GVTLANAVGTG-VADDKDTYIYVPEMIRFYLGEE-PILS 342 (474)
T ss_dssp EEECEEEECSCGG-GSCTTTSCTTCSSSCTTHHHHHHTT--SCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCSC-CSSE
T ss_pred eEEEEEEEcCCHH-hcCccccCCCcccccHHHHHHHHcC--CEEEeCCCchh-hhcCcHHHHHhHHHHHHhCCHh-hhcc
Confidence 4899999999653 2 2466667654 79999999885 8888862 1111111111111 112
Q ss_pred cCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEE--EeChhhHhcc-----CCC--eEEEecccCC--
Q 019319 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL--AYDQYSLKKL-----EPP--LVLQEFVNHG-- 204 (343)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~i--v~~~~~L~~l-----~~p--~v~QEFI~h~-- 204 (343)
.+|.+... +.++....+.. +. -+|+||..+. ++.+|.+ -.+.+++.++ ..| +|+||+|.-.
T Consensus 343 ~VpT~~c~--~~~~~~~vl~~--l~-~lViKp~~g~---gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~ 414 (474)
T 3n6x_A 343 NVPTYQLS--KADDLKYVLDN--LA-ELVVKEVQGS---GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTC 414 (474)
T ss_dssp ECCCEETT--SHHHHHHHHHS--GG-GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEE
T ss_pred CCCceecC--CHHHHHHHHhc--hh-heEEEecCCC---CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCccc
Confidence 35544432 12222222222 22 7999998854 3566655 2334555442 567 9999999742
Q ss_pred -----C------cEEEEEEE-CCEEEE
Q 019319 205 -----G------VLFKVYIV-GEAIKV 219 (343)
Q Consensus 205 -----g------~~~Kv~VI-G~~v~~ 219 (343)
| .++|+|++ |+.+.+
T Consensus 415 P~~~~~~~~~r~~dlR~F~~~g~~~~v 441 (474)
T 3n6x_A 415 PTLVETGIAPRHVDLRPFVLSGKTVSL 441 (474)
T ss_dssp EEEETTEEEEEEEEEECEEEESSSEEE
T ss_pred ceeeCCceeeeeEEEEEEEEcCCceEE
Confidence 2 57788888 554443
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=87.01 E-value=2.6 Score=41.34 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=59.1
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCCchHHH-HhcCCC-CcEEEecCCC-CCCCCceeeEEEeChhhHhcc-----
Q 019319 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV-LKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL----- 191 (343)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l-~~~~l~-fP~VvKp~~a-~GS~~sh~m~iv~~~~~L~~l----- 191 (343)
-.+|.++..... ..+..|++.+++. ..+..+.. ....++ ||+|+|+.+. .|-....+|.+..+.++.++.
T Consensus 12 K~ll~~~~~~~~-~~~~~~~~~~~~~-~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml 89 (425)
T 3mwd_A 12 KELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRL 89 (425)
T ss_dssp HHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTT
T ss_pred HHHHHHhccccC-CccCCcceEEeCC-CCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHH
Confidence 355665532100 1245666777753 32333322 234677 9999999773 344467789999998776542
Q ss_pred ------C------CCeEEEecccCC-CcEEEEEEECCE
Q 019319 192 ------E------PPLVLQEFVNHG-GVLFKVYIVGEA 216 (343)
Q Consensus 192 ------~------~p~v~QEFI~h~-g~~~Kv~VIG~~ 216 (343)
. .-+++|++++|+ ++.+-+.+.-|+
T Consensus 90 ~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 90 GQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp TCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred hhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecC
Confidence 1 138999999985 788877777665
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=69.80 E-value=12 Score=39.77 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=58.4
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHH-hcCCC-CcEEEecCCCC-CCCCceeeEEEeChhhHhcc----
Q 019319 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL-KAGLT-LPLVAKPLVAD-GSAKSHELSLAYDQYSLKKL---- 191 (343)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~-~~~l~-fP~VvKp~~a~-GS~~sh~m~iv~~~~~L~~l---- 191 (343)
--++|.++..+.. ..+..|++.+++. ..+..+... ...|+ +|+|+|+.+.. |-..+-+|.+..+.++.++.
T Consensus 11 aK~ll~~~~~~~~-~~~~~~~~~~v~~-~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~i 88 (829)
T 3pff_A 11 GKELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (829)
T ss_dssp HHHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhCcccc-ccccCCceEEeCC-CCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHH
Confidence 3455666532211 1233567777753 323333222 23455 89999996643 44456788888898876542
Q ss_pred -----C--------CCeEEEecccCC-CcEEEEEEECCE
Q 019319 192 -----E--------PPLVLQEFVNHG-GVLFKVYIVGEA 216 (343)
Q Consensus 192 -----~--------~p~v~QEFI~h~-g~~~Kv~VIG~~ 216 (343)
. .-+++|++++++ +++|-+.+.-|+
T Consensus 89 Lg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr 127 (829)
T 3pff_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (829)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred HHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecC
Confidence 1 137999999985 788887777665
No 79
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=47.47 E-value=47 Score=30.82 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHH---HhhhhhccCCCccccCCceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC-------
Q 019319 5 KEEIEE---QTREEELLSFPQTQQQSKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------- 73 (343)
Q Consensus 5 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------- 73 (343)
++||.+ .|.++.... . .+.-+..+|+-.|.+. =+.+ -+|..++.+.|-..+.++++..-...|
T Consensus 12 ~~ei~~ll~~A~~lk~~~-~--~~~L~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTa 85 (304)
T 3r7f_A 12 TEEIKDLLQTAQELKSGK-T--DNQLTGKFAANLFFEPSTRTR---FSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTI 85 (304)
T ss_dssp HHHHHHHHHHHHHHHTTC-C--CCTTTTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-C--CccCCCCEEEEEecCCChhHH---HhHHHHHHHCCCeEEEECcccccCCCCCCHHHHH
Confidence 456654 455554321 1 2223467788887762 2221 238889999999999999865322222
Q ss_pred ------CccEEEEccCchhHHHHHHHHHHhCCCceeeChhh-----HHHHhcCHHHHHHH
Q 019319 74 ------PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY-----AIQHLHNRQSMLQC 122 (343)
Q Consensus 74 ------~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~-----ai~~~~dR~~~~~~ 122 (343)
.+|+|..|...+.....+. ++.++||||=.+ -.+.+.|=+++.+.
T Consensus 86 rvLs~~~~D~iviR~~~~~~~~~la----~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~ 141 (304)
T 3r7f_A 86 RTLESIGVDVCVIRHSEDEYYEELV----SQVNIPILNAGDGCGQHPTQSLLDLMTIYEE 141 (304)
T ss_dssp HHHHHHTCCEEEEECSSTTCHHHHH----HHCSSCEEESCCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEecCChhHHHHHH----HhCCCCEEeCCCCCCcCcHHHHHHHHHHHHH
Confidence 3699999988754434443 446899998653 23444454454444
No 80
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=39.84 E-value=83 Score=24.36 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=48.2
Q ss_pred ccccchHHHhhhhhcceEEEE--eeCCCCCCc-CCCccEEEEccCchhHHHHHHHHHHh-CCCceeeChhhHHHHhcCHH
Q 019319 42 KSFLQPKLEGLARNKGILFVA--IDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQ 117 (343)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~--ID~~~~l~~-q~~fDvilhK~t~~~~~~~l~~~~~~-~p~v~ViDp~~ai~~~~dR~ 117 (343)
.|+.-.++.++|+++|+++.. ..... +.+ ...+|+||.=-.-......+++.... +-.+.|||+-+-....+|=.
T Consensus 19 Tsllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g~ 97 (108)
T 3nbm_A 19 SAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPS 97 (108)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCCHH
Confidence 455667788899999988765 33433 333 35799999522111222344444332 23477799987776567766
Q ss_pred HHHHHH
Q 019319 118 SMLQCV 123 (343)
Q Consensus 118 ~~~~~L 123 (343)
..++..
T Consensus 98 ~vl~~~ 103 (108)
T 3nbm_A 98 KALQFV 103 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 81
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=36.48 E-value=98 Score=23.60 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=46.3
Q ss_pred ccccchHHHhhhhhcceE--EEEeeCCCCCCc-CCCccEEEEccCchhHHHHHHHHHH-hCCCceeeChhhHHHHhcCHH
Q 019319 42 KSFLQPKLEGLARNKGIL--FVAIDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQ-THPEVTVLDPPYAIQHLHNRQ 117 (343)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~--~v~ID~~~~l~~-q~~fDvilhK~t~~~~~~~l~~~~~-~~p~v~ViDp~~ai~~~~dR~ 117 (343)
.|+...++.++++++|++ +...+... +.+ ...+|+||.=..-......+++... .+-.+.+|||..-. ..|..
T Consensus 17 TSll~~kl~~~~~~~gi~~~i~~~~~~~-~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~ 93 (109)
T 2l2q_A 17 TSMLVQRIEKYAKSKNINATIEAIAETR-LSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGE 93 (109)
T ss_dssp SCHHHHHHHHHHHHHTCSEEEEEECSTT-HHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHH
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHH
Confidence 346777888999999975 44445544 222 3578999853321112233333322 23456779998774 46776
Q ss_pred HHHHHHH
Q 019319 118 SMLQCVA 124 (343)
Q Consensus 118 ~~~~~L~ 124 (343)
..++.+.
T Consensus 94 ~vl~~i~ 100 (109)
T 2l2q_A 94 KVLQLAI 100 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 82
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=34.86 E-value=1.3e+02 Score=26.84 Aligned_cols=59 Identities=5% Similarity=0.085 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhccCCCccccCCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEe
Q 019319 5 KEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAI 63 (343)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK~~~~---~~~~l~~~a~~~Gi~~v~I 63 (343)
++.|.+-++++.-..-+.+....+..+||+.++..-...| ....+.++|+++|+++...
T Consensus 19 r~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 80 (342)
T 1jx6_A 19 RNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLN 80 (342)
T ss_dssp HHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4455555666554333333345667899999975111112 2334667888999876554
No 83
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=34.60 E-value=87 Score=29.30 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=48.0
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCc------------CC------------CccEEEEcc
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------QG------------PFDIVLHKL 82 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~------------q~------------~fDvilhK~ 82 (343)
+..+|+-.|.+. =+.+ -+|..++.+.|-..+.++.+..-.. .| =+|+|..|.
T Consensus 35 ~gk~l~~lF~epSTRTR---~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~IviR~ 111 (324)
T 1js1_X 35 RNKTLLMIFFNSSLRTR---LSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRS 111 (324)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEEEC
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcEEEEec
Confidence 567888888762 2222 2378899999999999998652222 22 279999997
Q ss_pred Cc----hh---HHHHHHHHHHhCCCceeeChh
Q 019319 83 TG----KE---WRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 83 t~----~~---~~~~l~~~~~~~p~v~ViDp~ 107 (343)
.. .. ....++. .+++.+++|||-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~-lA~~~~vPVINa~ 142 (324)
T 1js1_X 112 FARFENREYDYNEVIINQ-FIQHSGRPVFSME 142 (324)
T ss_dssp CCCSSCHHHHHHTHHHHH-HHHHSSSCEEESS
T ss_pred ccccccccccccchHHHH-HHhhCCCCEEECC
Confidence 71 10 1122333 3455689999944
No 84
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=34.28 E-value=51 Score=28.57 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=24.9
Q ss_pred cCCceEEEEEEeccc-ccccc---cchHHHhhhhhcceEEEEeeCC
Q 019319 25 QQSKLVVVGYALTSK-KTKSF---LQPKLEGLARNKGILFVAIDQN 66 (343)
Q Consensus 25 ~~~~~~~VGy~l~~k-K~~~~---~~~~l~~~a~~~Gi~~v~ID~~ 66 (343)
.+.+..+||+.++.. -...| ....+.++|+++|+++...+..
T Consensus 15 ~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 60 (296)
T 3brq_A 15 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK 60 (296)
T ss_dssp ----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred hcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445678999999752 11222 2344667888999998876654
No 85
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=32.85 E-value=76 Score=29.80 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=49.7
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+..|.+- =+.+ -+|..++.+.|-.++.++.+..-... .=+|+|..|...+.....+.+|
T Consensus 43 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 119 (333)
T 1duv_G 43 TGKNIALIFEKDSTRTR---CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 119 (333)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHh
Confidence 467888888652 2222 23788999999999999886522211 2379999999876554555554
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
. ++||||-.
T Consensus 120 ~----~vPVINa~ 128 (333)
T 1duv_G 120 A----SVPVWNGL 128 (333)
T ss_dssp H----SSCEEESC
T ss_pred C----CCCeEcCC
Confidence 4 78999944
No 86
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=32.16 E-value=43 Score=29.64 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=25.9
Q ss_pred HHHHHHhhhhhccCCCccccCCceEEEEEEecccc----cccc---cchHHHhhhhhcceEEEEeeCC
Q 019319 6 EEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKK----TKSF---LQPKLEGLARNKGILFVAIDQN 66 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK----~~~~---~~~~l~~~a~~~Gi~~v~ID~~ 66 (343)
+|++|+-. ..+....+.+..+||+.++... ...| ....+.++|+++|+.+...+..
T Consensus 4 ~elgY~pn-----~~Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 66 (305)
T 3huu_A 4 SKLGYIPN-----QAARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSE 66 (305)
T ss_dssp ----------------------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCS
T ss_pred HHhCCCcC-----HHHHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56777632 1112234556789999988721 1111 2334667889999999876554
No 87
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=30.35 E-value=25 Score=27.13 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=41.3
Q ss_pred ccccchHHHhhhhhcceEE--EEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChhhHHHHhcCHHHH
Q 019319 42 KSFLQPKLEGLARNKGILF--VAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (343)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~--v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~ai~~~~dR~~~ 119 (343)
.|+.-.++.++++++|+++ ...+...--.....+|+||.=-.-......+++.... -+++|||+..-.. +|-...
T Consensus 16 TS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~-~~v~vI~~~~yg~--~~g~~v 92 (106)
T 1e2b_A 16 TSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN-KPVEVIDSLLYGK--VDGLGV 92 (106)
T ss_dssp THHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSS-SCCCBCCHHHHTT--TCTTHH
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcC-CCceEECHHHccC--CCHHHH
Confidence 3456667888999999764 4444444111134689999322211122233332223 3699999776532 454443
Q ss_pred H
Q 019319 120 L 120 (343)
Q Consensus 120 ~ 120 (343)
+
T Consensus 93 l 93 (106)
T 1e2b_A 93 L 93 (106)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=30.28 E-value=93 Score=29.09 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=49.6
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+-.|.+- =+.+ -+|..++.+.|-..+.++.+..-... .=+|+|..|...+.....+.+|
T Consensus 57 ~gk~la~lF~epSTRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 133 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTR---LAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEY 133 (325)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHh
Confidence 467888888762 2222 23788999999999999886522211 2379999999876554555554
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
. +++|||-.
T Consensus 134 ~----~vPVINa~ 142 (325)
T 1vlv_A 134 S----GVPVYNGL 142 (325)
T ss_dssp H----CSCEEESC
T ss_pred C----CCCEEeCC
Confidence 4 78999944
No 89
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=29.92 E-value=1.5e+02 Score=27.72 Aligned_cols=93 Identities=6% Similarity=0.022 Sum_probs=53.2
Q ss_pred HHHHHH---HhhhhhccCCCccccCCceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCC-CCc--------
Q 019319 5 KEEIEE---QTREEELLSFPQTQQQSKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRP-LSD-------- 71 (343)
Q Consensus 5 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~-l~~-------- 71 (343)
++||.+ .|.++...... +.-+..+|+-.|.+.= +.+ -+|..++.+.|-..+.++.+.. +..
T Consensus 24 ~~ei~~ll~~A~~lk~~~~~---~~L~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTa 97 (323)
T 3gd5_A 24 EAQLHALLTLAHQLKRGERV---ANLHGKVLGLVFLKASTRTR---VSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTA 97 (323)
T ss_dssp HHHHHHHHHHHHHHHHTSSC---CCCTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEC----------CCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc---cccCCCEEEEEecCCCcchH---hhHHHHHHHcCCeEEEeCcccccCCCCCCHHHHH
Confidence 455554 45555432211 2234568888887622 222 2378899999999999887642 111
Q ss_pred ---CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChh
Q 019319 72 ---QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 72 ---q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~ 107 (343)
..=+|+|..|...+.....+.+| .+++|||-.
T Consensus 98 rvLs~~~D~iviR~~~~~~~~~lA~~----~~vPVINag 132 (323)
T 3gd5_A 98 RVLGRYVDGLAIRTFAQTELEEYAHY----AGIPVINAL 132 (323)
T ss_dssp HHHTTTCSEEEEECSSHHHHHHHHHH----HCSCEEEEE
T ss_pred HHHHHhCCEEEEecCChhHHHHHHHh----CCCCEEeCC
Confidence 12379999999875444444444 478999844
No 90
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.46 E-value=88 Score=26.95 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCceEEEEEEecccc--cccccchHHHhhhhhcceEEEEeeCCC
Q 019319 26 QSKLVVVGYALTSKK--TKSFLQPKLEGLARNKGILFVAIDQNR 67 (343)
Q Consensus 26 ~~~~~~VGy~l~~kK--~~~~~~~~l~~~a~~~Gi~~v~ID~~~ 67 (343)
+.+..+||+.++.-. .-.-....+.++|+++|+++...+...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 456789999997642 111223346678899999998877653
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.98 E-value=86 Score=27.09 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=39.8
Q ss_pred ceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019319 28 KLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (343)
Q Consensus 28 ~~~~VGy~l~~kK~~~~---~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi 104 (343)
+..+||+.++.-- ..| ....+.++|+++|+++...+.... .......++.+.....+.+++
T Consensus 4 ~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~~~~l~~~~vdgiIi 67 (291)
T 3l49_A 4 EGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRN---------------DQTQVSQIQTLIAQKPDAIIE 67 (291)
T ss_dssp TTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------HHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCC---------------HHHHHHHHHHHHHcCCCEEEE
Confidence 4578999998633 222 234577789999999987765431 112234555666666666666
Q ss_pred Chh
Q 019319 105 DPP 107 (343)
Q Consensus 105 Dp~ 107 (343)
-|.
T Consensus 68 ~~~ 70 (291)
T 3l49_A 68 QLG 70 (291)
T ss_dssp ESS
T ss_pred eCC
Confidence 554
No 92
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=27.95 E-value=1.3e+02 Score=29.11 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=41.6
Q ss_pred c-EEEecCCCCCCCCceeeEEEeChhhHhccC----------------CCeEEEecccCC----C--cEEEEEEECCEEE
Q 019319 162 P-LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHG----G--VLFKVYIVGEAIK 218 (343)
Q Consensus 162 P-~VvKp~~a~GS~~sh~m~iv~~~~~L~~l~----------------~p~v~QEFI~h~----g--~~~Kv~VIG~~v~ 218 (343)
| +|+|... |+ .+-|+..|.+.+++..++ ..+++||=|.+- + ..-=||+||.+|+
T Consensus 278 PfV~VKADa--GT-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vv 354 (432)
T 3k1t_A 278 PFVIVKADA--GT-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVV 354 (432)
T ss_dssp CCEEEEEEC--GG-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEE
T ss_pred ceEEEEcCC--CC-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEE
Confidence 5 5889544 55 677778888888887752 248999988763 1 2335899999988
Q ss_pred EE-EEe
Q 019319 219 VV-RRF 223 (343)
Q Consensus 219 ~~-~R~ 223 (343)
+. .|.
T Consensus 355 GgFyRv 360 (432)
T 3k1t_A 355 GGFYRV 360 (432)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 75 554
No 93
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=27.62 E-value=99 Score=26.58 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=34.6
Q ss_pred CceEEEEEEeccccc--ccccchHHHhhhhhcceEEEEeeCCCCCCc---------CCCccEEE
Q 019319 27 SKLVVVGYALTSKKT--KSFLQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVL 79 (343)
Q Consensus 27 ~~~~~VGy~l~~kK~--~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~---------q~~fDvil 79 (343)
.+..+||+.++.-.- -.-....+.++|+++|+++...+.. .... ...+|.||
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 456789999976321 1112334667889999999988887 3332 24788888
No 94
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=26.78 E-value=45 Score=33.00 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEEecC
Q 019319 282 GLRLFNLDIIREHGTRDQFYVIDINY 307 (343)
Q Consensus 282 Gl~l~GvDvi~~~~~g~~~~ViDVN~ 307 (343)
=+.++|+|++++. +| +++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 4789999999986 46 799999997
No 95
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=26.07 E-value=73 Score=29.93 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=48.5
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+..|.+. =+.+ -+|..++.+.|-.++.++.+..-...| =+|+|..|...+.....+.
T Consensus 44 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA-- 118 (335)
T 1dxh_A 44 KRKNIALIFEKTSTRTR---CAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELA-- 118 (335)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHH--
Confidence 467888888652 2222 237889999999999999875322211 3699999988754333333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
++.++||||-.
T Consensus 119 --~~s~vPVINa~ 129 (335)
T 1dxh_A 119 --KFAGVPVFNGL 129 (335)
T ss_dssp --HHSSSCEEEEE
T ss_pred --HhCCCCEEcCC
Confidence 44589999944
No 96
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=25.96 E-value=87 Score=29.69 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=48.8
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCc------------CCCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------QGPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~------------q~~fDvilhK~t~~~~~~~l~~ 93 (343)
-+..+|+-.|.+- =+.+ -+|..++.+.|-..+.++.+..-.. ..=+|+|..|...+.....+.
T Consensus 39 L~gK~la~lF~epSTRTR---~SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA- 114 (355)
T 4a8p_A 39 LKNKSLGMIFQQSSTRTR---VSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLA- 114 (355)
T ss_dssp TTTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHH-
T ss_pred cCCCEEEEEecCCChhhH---hhHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHH-
Confidence 3567888888762 2222 2378899999999999988642111 124799999988753333333
Q ss_pred HHHhCCCceeeChh
Q 019319 94 YRQTHPEVTVLDPP 107 (343)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (343)
++.++||||-.
T Consensus 115 ---~~~~vPVINag 125 (355)
T 4a8p_A 115 ---NCATIPVINGM 125 (355)
T ss_dssp ---HHCSSCEEECC
T ss_pred ---HhCCCCEEeCC
Confidence 44589999854
No 97
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=25.78 E-value=76 Score=29.44 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=55.7
Q ss_pred HHHHHH---HhhhhhccCCCccccCCceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcCC-------
Q 019319 5 KEEIEE---QTREEELLSFPQTQQQSKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------- 73 (343)
Q Consensus 5 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------- 73 (343)
++||.+ .|.++.-.... .-+..+|+-.|.+.= +.+ -+|..++.+.|-+.+.++.+..-...|
T Consensus 13 ~~ei~~ll~~A~~lk~~~~~----~L~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTa 85 (307)
T 3tpf_A 13 KEEILSLVNHASELKKEPKK----LLQDKTLAMIFEKNSTRTR---MAFELAITELGGKALFLSSNDLQLSRGEPVKDTA 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHSCCC----TTTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchh----hcCCCEEEEEecCCCcchH---HhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHH
Confidence 455554 45555432211 334567888876622 222 237889999999999998865222111
Q ss_pred -----CccEEEEccCchhHHHHHHHHHHhCCCceeeChh
Q 019319 74 -----PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 74 -----~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~ 107 (343)
=+|+|..|...+.....+ +++.+++|||-.
T Consensus 86 rvls~~~D~iviR~~~~~~~~~l----A~~~~vPVINag 120 (307)
T 3tpf_A 86 RVIGAMVDFVMMRVNKHETLLEF----ARYSKAPVINAL 120 (307)
T ss_dssp HHHHHHSSEEEEECSCHHHHHHH----HHHCSSCEEEEE
T ss_pred HHHHHhCCEEEEecCChHHHHHH----HHhCCCCEEeCC
Confidence 369999998875333333 344589999854
No 98
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=25.73 E-value=1.5e+02 Score=27.84 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=55.6
Q ss_pred HHHHHH---HhhhhhccCCCccccCCceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCC-------CCc--
Q 019319 5 KEEIEE---QTREEELLSFPQTQQQSKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRP-------LSD-- 71 (343)
Q Consensus 5 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~-------l~~-- 71 (343)
++||.+ .|.++...... +.-+..+|+-.|.+-= +.+. +|..++.+.|-..+.++.+.. +.+
T Consensus 46 ~~ei~~ll~~A~~lk~~~~~---~~L~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTa 119 (340)
T 4ep1_A 46 QEEIISLIEFAIYLKKNKQE---PLLQGKILGLIFDKHSTRTRV---SFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTA 119 (340)
T ss_dssp HHHHHHHHHHHHHHHHSCCC---CTTTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEESCC------CCTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccc---cccCCceEEEEecCCCccHHH---HHHHHHHHcCCeEEEcCcccccCCCCCCHHHHH
Confidence 456554 45555432111 2334668888886622 2222 378899999999999988641 221
Q ss_pred ---CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChh
Q 019319 72 ---QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (343)
Q Consensus 72 ---q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~ 107 (343)
..=+|+|..|...+.....+. ++.++||||-.
T Consensus 120 rvLs~y~D~IviR~~~~~~~~~lA----~~~~vPVINag 154 (340)
T 4ep1_A 120 KVLSHYIDGIMIRTFSHADVEELA----KESSIPVINGL 154 (340)
T ss_dssp HHHHHHCSEEEEECSCHHHHHHHH----HHCSSCEEEEE
T ss_pred HHHHHhCCEEEEecCChhHHHHHH----HhCCCCEEeCC
Confidence 013799999988753333333 44589999843
No 99
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=25.55 E-value=1.5e+02 Score=27.01 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCCeEEEecccCCCcEEEEEE--ECCE--EEEEEEecCCCCccccCccCCceeeeccc
Q 019319 192 EPPLVLQEFVNHGGVLFKVYI--VGEA--IKVVRRFSLPDVTKQDLSTSAGVFRFPRV 245 (343)
Q Consensus 192 ~~p~v~QEFI~h~g~~~Kv~V--IG~~--v~~~~R~slp~~~~~~~~~~~g~~~~~~~ 245 (343)
+...++||=| .|.=|.+++ =|+. +.++.|...- ..++.+|.|+.+
T Consensus 32 ~~ewvatEKI--HGaNFsii~~~d~~~~~i~~akRs~~l-------~~~e~FfGy~~i 80 (277)
T 1xdn_A 32 AQEWVACEKV--HGTNFGIYLINQGDHEVVRFAKRSGIM-------DPNENFFGYHIL 80 (277)
T ss_dssp GSCEEEEEEC--CSEEEEEEEEEETTEEEEEEEETTEEC-------CTTCCCTTGGGG
T ss_pred CCcEEEEEee--ccccEEEEEecCCCeeEEEEeeccccc-------CcccccccHHHH
Confidence 5579999999 699999999 5887 7888877531 113456666654
No 100
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.36 E-value=82 Score=29.11 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=48.9
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~ 93 (343)
-+..+|+-.|.+.= +.+ -+|..++.+.|-+.+.++.+..-... .=+|+|..|...+.....+.
T Consensus 43 L~gk~~~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la- 118 (301)
T 2ef0_A 43 LKGKVLALLFEKPSLRTR---TTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALA- 118 (301)
T ss_dssp TTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHH-
T ss_pred CCCCEEEEEeccCCcchH---HHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHH-
Confidence 35678888887622 222 23788999999999999876521111 23799999998754433333
Q ss_pred HHHhCCCceeeChh
Q 019319 94 YRQTHPEVTVLDPP 107 (343)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (343)
++.+++|||-.
T Consensus 119 ---~~~~vPVINa~ 129 (301)
T 2ef0_A 119 ---RHAKVPVVNAL 129 (301)
T ss_dssp ---HHCSSCEEEEE
T ss_pred ---HHCCCCEEeCC
Confidence 44589999943
No 101
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.91 E-value=2.1e+02 Score=25.49 Aligned_cols=62 Identities=6% Similarity=0.056 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhhccCCCcc--ccCCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCCC
Q 019319 5 KEEIEEQTREEELLSFPQT--QQQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNR 67 (343)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~VGy~l~~kK~~~~---~~~~l~~~a~~~Gi~~v~ID~~~ 67 (343)
++.|.+-++++.--..+.+ ....+..+||+.++.-. ..| ....+.++|+++|+.+...+...
T Consensus 42 r~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 108 (344)
T 3kjx_A 42 RARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLS-NMVFPEVLTGINQVLEDTELQPVVGVTDY 108 (344)
T ss_dssp HHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSS-SSSHHHHHHHHHHHHTSSSSEEEEEECTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCC-cHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4556666666665433322 34556789999997632 112 22346668899999998766543
No 102
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=24.86 E-value=78 Score=29.79 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=48.0
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~ 93 (343)
-+..+|+-.|.+- =+.+. +|..++.+.|-..+.++.+..-...| =+|+|..|...+.....+.
T Consensus 61 L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA- 136 (339)
T 4a8t_A 61 LKNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLA- 136 (339)
T ss_dssp TTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHH-
T ss_pred cCCceEEEEecCCCchHHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHH-
Confidence 3567888888662 22222 37889999999999998864222111 3799999988753333333
Q ss_pred HHHhCCCceeeChh
Q 019319 94 YRQTHPEVTVLDPP 107 (343)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (343)
++.++||||-.
T Consensus 137 ---~~~~vPVINag 147 (339)
T 4a8t_A 137 ---NCATIPVINGM 147 (339)
T ss_dssp ---HHCSSCEEECC
T ss_pred ---HhCCCCEEECC
Confidence 44589999854
No 103
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.60 E-value=1.2e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=26.3
Q ss_pred ceEEEEEEecccccc--cccchHHHhhhhhcceEEEEeeCCC
Q 019319 28 KLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNR 67 (343)
Q Consensus 28 ~~~~VGy~l~~kK~~--~~~~~~l~~~a~~~Gi~~v~ID~~~ 67 (343)
.+.+||+.++.-.-. .-....+.++|+++|+++...+...
T Consensus 14 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 55 (298)
T 3tb6_A 14 SNKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN 55 (298)
T ss_dssp -CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 348999998874311 1123346678899999998877653
No 104
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=24.52 E-value=82 Score=29.92 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=48.8
Q ss_pred ceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+..|.+.= +.+ -+|..++.+.|-.++.++.+..-...| =+|+|..|-..+.....+.
T Consensus 66 ~Gk~la~lF~e~STRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA-- 140 (359)
T 2w37_A 66 EGKNIALLFEKSSTRTR---SAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILA-- 140 (359)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHH--
Confidence 4678888886522 222 237889999999999998875222222 3699999988754433333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
++.+++|||-.
T Consensus 141 --~~s~vPVINa~ 151 (359)
T 2w37_A 141 --RDSGVPVWNGL 151 (359)
T ss_dssp --HHSSSCEEEEE
T ss_pred --HhCCCCEEcCC
Confidence 44589999943
No 105
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.46 E-value=93 Score=26.89 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCceEEEEEEecccccc--cccchHHHhhhhhcceEEEEeeCCC
Q 019319 26 QSKLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNR 67 (343)
Q Consensus 26 ~~~~~~VGy~l~~kK~~--~~~~~~l~~~a~~~Gi~~v~ID~~~ 67 (343)
+.+..+||+.++.-.-. .-....+.++|+++|+++...+.+.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN 48 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 45678999999763311 1123446678899999998877643
No 106
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=23.71 E-value=45 Score=30.76 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=46.3
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC-------------CccEEEEccCchhHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG-------------PFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~-------------~fDvilhK~t~~~~~~~l~~ 93 (343)
+..+| -.|.+. =+.+ -+|..++.+.|-+.+.++.+..-...| -+|+|..|...+.....
T Consensus 34 ~gk~~-~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~~~~~~--- 106 (291)
T 3d6n_B 34 KASAV-LFFSEPSTRTR---LSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYK--- 106 (291)
T ss_dssp CCEEE-EEESSCCHHHH---HHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSCCCSCH---
T ss_pred CCCEE-EEecCCCccHH---HHHHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCChHHHHH---
Confidence 45677 666552 2222 237889999999999999875332222 26999999876433222
Q ss_pred HHHhCCCceeeC
Q 019319 94 YRQTHPEVTVLD 105 (343)
Q Consensus 94 ~~~~~p~v~ViD 105 (343)
-.+++.+++|||
T Consensus 107 ~la~~~~vPVIN 118 (291)
T 3d6n_B 107 EIVKSLNLRLVN 118 (291)
T ss_dssp HHHHTCSSEEEE
T ss_pred HHHHhCCCCEEe
Confidence 034567899999
No 107
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=23.65 E-value=20 Score=27.22 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=16.1
Q ss_pred EecccCC--CcEEEEEEECCE
Q 019319 198 QEFVNHG--GVLFKVYIVGEA 216 (343)
Q Consensus 198 QEFI~h~--g~~~Kv~VIG~~ 216 (343)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5699998 999999999986
No 108
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=23.10 E-value=91 Score=28.99 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=48.3
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------CCccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------GPFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q------------~~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+-.|.+- =+.+ -+|..++.+.|-..+.++.+..-... .=+|+|..|...+.....+.
T Consensus 45 ~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 119 (315)
T 1pvv_A 45 EGKTLAMIFQKPSTRTR---VSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLA-- 119 (315)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHH--
Confidence 467888888752 2222 23788999999999999876422111 23799999988753333333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
++.+++|||-.
T Consensus 120 --~~~~vPVINa~ 130 (315)
T 1pvv_A 120 --KYATVPVINGL 130 (315)
T ss_dssp --HHCSSCEEEEE
T ss_pred --HhCCCCEEcCC
Confidence 44589999943
No 109
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=22.97 E-value=93 Score=29.00 Aligned_cols=73 Identities=10% Similarity=-0.012 Sum_probs=48.8
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+-.|.+- =+.+ -+|..++.+.|-+.+.++.+..-...| =+|+|..|...+.....+
T Consensus 45 ~gk~l~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~l--- 118 (321)
T 1oth_A 45 QGKSLGMIFEKRSTRTR---LSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTL--- 118 (321)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHH---
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHH---
Confidence 567888888752 2222 237889999999999999875222211 369999998875433333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
+++.+++|||-.
T Consensus 119 -A~~~~vPVINa~ 130 (321)
T 1oth_A 119 -AKEASIPIINGL 130 (321)
T ss_dssp -HHHCSSCEEESC
T ss_pred -HHhCCCCEEcCC
Confidence 345589999943
No 110
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=22.41 E-value=1.3e+02 Score=28.12 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=45.6
Q ss_pred cCCceEEEEEEecccc-cccccc---hHHHhhhhhcc--eEEEEeeCCCCCCc---------CCCccEEEEccCchhHHH
Q 019319 25 QQSKLVVVGYALTSKK-TKSFLQ---PKLEGLARNKG--ILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQ 89 (343)
Q Consensus 25 ~~~~~~~VGy~l~~kK-~~~~~~---~~l~~~a~~~G--i~~v~ID~~~~l~~---------q~~fDvilhK~t~~~~~~ 89 (343)
...+.++||+...-.. -++|.+ +.+.+++++.| +++..++....-.+ +..+|+||- ++.....
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~~~~ 99 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFGYMD 99 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGGGHH
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHHHHH
Confidence 3456789999996333 235554 55777889999 99887776432111 235887773 2323345
Q ss_pred HHHHHHHhCCCcee
Q 019319 90 ILEEYRQTHPEVTV 103 (343)
Q Consensus 90 ~l~~~~~~~p~v~V 103 (343)
.+.+.++++|++++
T Consensus 100 ~~~~vA~~~Pdv~f 113 (356)
T 3s99_A 100 PTVKVAKKFPDVKF 113 (356)
T ss_dssp HHHHHHTTCTTSEE
T ss_pred HHHHHHHHCCCCEE
Confidence 56677778887544
No 111
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=21.75 E-value=1.7e+02 Score=27.07 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=48.1
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019319 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (343)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~~ 94 (343)
+..+|+-.|.+. =+.+ -+|..++.+.|-..+.++.+..-...| =+|+|..|...+.....+
T Consensus 38 ~gk~l~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~l--- 111 (307)
T 2i6u_A 38 GPRGVAVIFDKNSTRTR---FSFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAM--- 111 (307)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHH---
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHH---
Confidence 567888888752 2222 237889999999999998764221111 369999998875333333
Q ss_pred HHhCCCceeeChh
Q 019319 95 RQTHPEVTVLDPP 107 (343)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (343)
+++.+++|||-.
T Consensus 112 -A~~~~vPVINa~ 123 (307)
T 2i6u_A 112 -ASVATVPVINAL 123 (307)
T ss_dssp -HHHCSSCEEESC
T ss_pred -HhhCCCCEEcCC
Confidence 344589999943
No 112
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=21.03 E-value=88 Score=29.01 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=48.5
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019319 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (343)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~ 93 (343)
-+..+|+-.|.+-= +.+. +|..++.+.|-+.+.++.+..-...| =+|+|..|...+.. ++
T Consensus 43 L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~---~~- 115 (309)
T 4f2g_A 43 LHDRTLAMIFEKSSTRTRL---SFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQDI---IQ- 115 (309)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCHHH---HH-
T ss_pred cCCceEEEEecCCChhhHh---hHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCHHH---HH-
Confidence 34577888887622 2222 37889999999999998764211111 37999999887422 33
Q ss_pred HHHhCCCceeeChh
Q 019319 94 YRQTHPEVTVLDPP 107 (343)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (343)
..+++.+++|||-.
T Consensus 116 ~lA~~~~vPVINag 129 (309)
T 4f2g_A 116 RFAENSRVPVINGL 129 (309)
T ss_dssp HHHHTCSSCEEEEE
T ss_pred HHHHhCCCCEEECC
Confidence 33456789999944
No 113
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=20.28 E-value=2.9e+02 Score=23.52 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=44.2
Q ss_pred CCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCCCCCCcCC--CccEEEEccCchhHHHHHHHHHHhCCC
Q 019319 26 QSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQG--PFDIVLHKLTGKEWRQILEEYRQTHPE 100 (343)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~---~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~--~fDvilhK~t~~~~~~~l~~~~~~~p~ 100 (343)
+.+..+||+.++.-. ..| ....+.++|+++|+++...+.+.....+. .+|.||.-..+.. ...+....+..-.
T Consensus 5 ~~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l~~~~iP 82 (277)
T 3cs3_A 5 RRQTNIIGVYLADYG-GSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP-TKEIEKFAERGHS 82 (277)
T ss_dssp CCCCCEEEEEECSSC-TTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTTSC-HHHHHHHHHTTCE
T ss_pred ccCCcEEEEEecCCC-ChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecCCCC-HHHHHHHHhcCCC
Confidence 345678999987522 112 23346678899999998777654333322 6888776443211 1333333333333
Q ss_pred ceeeCh
Q 019319 101 VTVLDP 106 (343)
Q Consensus 101 v~ViDp 106 (343)
++++|.
T Consensus 83 vV~~~~ 88 (277)
T 3cs3_A 83 IVVLDR 88 (277)
T ss_dssp EEESSS
T ss_pred EEEEec
Confidence 555554
No 114
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=20.10 E-value=25 Score=27.60 Aligned_cols=23 Identities=30% Similarity=0.754 Sum_probs=18.2
Q ss_pred CeEEEecccCC--CcEEEEEEECCE
Q 019319 194 PLVLQEFVNHG--GVLFKVYIVGEA 216 (343)
Q Consensus 194 p~v~QEFI~h~--g~~~Kv~VIG~~ 216 (343)
|+-.+.|+||+ |-+|+|..+|+.
T Consensus 23 ~ms~E~YLNHPTFGLLyrVc~~~e~ 47 (112)
T 3n5b_B 23 PENSETYINHPTWGLLYRICMVDES 47 (112)
T ss_dssp ---CCCEEEETTTEEEEEEEEEETT
T ss_pred CcchhhhccCCccchheeeeecCCc
Confidence 66677899998 999999999986
Done!