Query 019322
Match_columns 343
No_of_seqs 256 out of 2435
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 8.9E-86 1.9E-90 627.1 33.9 324 13-337 2-330 (358)
2 PLN02269 Pyruvate dehydrogenas 100.0 8.7E-76 1.9E-80 567.5 34.9 304 31-337 25-329 (362)
3 CHL00149 odpA pyruvate dehydro 100.0 2E-74 4.2E-79 556.0 36.4 306 30-337 14-327 (341)
4 TIGR03182 PDH_E1_alph_y pyruva 100.0 5.8E-74 1.3E-78 548.3 33.2 301 35-337 1-302 (315)
5 KOG1182 Branched chain alpha-k 100.0 2.9E-74 6.2E-79 526.7 23.2 338 1-338 51-389 (432)
6 PLN02374 pyruvate dehydrogenas 100.0 1.4E-72 3.1E-77 555.0 36.0 307 29-337 79-393 (433)
7 KOG0225 Pyruvate dehydrogenase 100.0 3.6E-73 7.7E-78 523.7 27.0 322 10-338 36-358 (394)
8 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 3.8E-72 8.3E-77 531.5 32.8 292 41-333 1-293 (293)
9 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.5E-71 3.2E-76 536.9 36.5 314 13-336 1-314 (341)
10 PF00676 E1_dh: Dehydrogenase 100.0 2.5E-71 5.3E-76 526.7 29.8 295 42-337 1-295 (300)
11 PRK09404 sucA 2-oxoglutarate d 100.0 2.1E-58 4.6E-63 485.8 32.9 301 32-336 185-516 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 9.1E-54 2E-58 449.0 30.6 304 30-337 183-518 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 6.3E-50 1.4E-54 369.9 18.9 230 51-284 1-262 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.2E-37 4.7E-42 318.5 26.1 326 10-339 463-824 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.5E-33 3.3E-38 289.4 22.7 226 27-272 9-248 (581)
16 COG3959 Transketolase, N-termi 100.0 1.9E-31 4.1E-36 236.1 20.7 218 38-268 7-242 (243)
17 KOG0450 2-oxoglutarate dehydro 100.0 3E-30 6.5E-35 256.5 21.5 307 30-341 243-580 (1017)
18 COG0567 SucA 2-oxoglutarate de 100.0 9.2E-30 2E-34 262.6 24.8 305 29-337 168-500 (906)
19 PRK12754 transketolase; Review 100.0 7.7E-28 1.7E-32 249.1 28.9 181 100-291 75-274 (663)
20 PF00456 Transketolase_N: Tran 100.0 1.4E-28 3E-33 236.0 18.5 195 87-292 54-272 (332)
21 TIGR00232 tktlase_bact transke 100.0 1.6E-27 3.5E-32 247.7 27.6 164 100-273 71-248 (653)
22 cd02012 TPP_TK Thiamine pyroph 100.0 1.2E-27 2.5E-32 222.8 22.4 180 87-275 49-235 (255)
23 KOG0451 Predicted 2-oxoglutara 100.0 2.6E-28 5.6E-33 238.1 18.4 304 32-340 153-497 (913)
24 PTZ00089 transketolase; Provis 100.0 3.5E-27 7.6E-32 245.5 25.0 217 66-292 28-277 (661)
25 cd02017 TPP_E1_EcPDC_like Thia 100.0 7.2E-27 1.6E-31 225.3 24.7 228 69-306 35-361 (386)
26 cd02007 TPP_DXS Thiamine pyrop 100.0 1.8E-27 3.9E-32 213.0 18.9 167 86-271 24-194 (195)
27 PRK12753 transketolase; Review 100.0 3.2E-27 6.9E-32 245.6 22.2 178 87-274 57-253 (663)
28 PRK05899 transketolase; Review 99.9 3.2E-26 6.9E-31 237.8 25.4 194 87-291 61-276 (624)
29 PLN02790 transketolase 99.9 4.6E-26 1E-30 236.9 22.4 178 87-274 47-245 (654)
30 PRK05444 1-deoxy-D-xylulose-5- 99.9 5.2E-26 1.1E-30 234.3 21.1 228 26-273 12-248 (580)
31 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 1.2E-25 2.6E-30 232.4 20.7 227 27-273 7-280 (617)
32 TIGR00759 aceE pyruvate dehydr 99.9 3.5E-24 7.7E-29 222.7 26.4 188 77-273 115-394 (885)
33 TIGR03186 AKGDH_not_PDH alpha- 99.9 8E-24 1.7E-28 222.3 27.1 249 12-273 54-394 (889)
34 cd02011 TPP_PK Thiamine pyroph 99.9 8.5E-25 1.8E-29 198.0 15.2 167 71-254 2-174 (227)
35 PRK12571 1-deoxy-D-xylulose-5- 99.9 3.9E-24 8.4E-29 222.0 21.5 238 14-273 5-289 (641)
36 PLN02234 1-deoxy-D-xylulose-5- 99.9 6.3E-24 1.4E-28 218.2 21.3 200 65-275 104-329 (641)
37 COG0021 TktA Transketolase [Ca 99.9 3.7E-23 8.1E-28 207.1 25.4 159 105-274 84-255 (663)
38 PRK13012 2-oxoacid dehydrogena 99.9 1.5E-22 3.2E-27 213.5 26.9 189 76-273 128-408 (896)
39 PLN02582 1-deoxy-D-xylulose-5- 99.9 4.6E-23 1E-27 213.4 21.2 230 27-274 40-327 (677)
40 PRK09405 aceE pyruvate dehydro 99.9 6E-22 1.3E-26 208.3 26.4 246 12-272 60-399 (891)
41 KOG0523 Transketolase [Carbohy 99.9 7.2E-22 1.6E-26 195.9 21.4 214 45-271 14-245 (632)
42 PRK05261 putative phosphoketol 99.8 7.2E-20 1.6E-24 190.6 18.5 202 63-271 48-287 (785)
43 PF13292 DXP_synthase_N: 1-deo 99.8 8.8E-21 1.9E-25 173.6 9.6 220 27-266 7-270 (270)
44 PRK11864 2-ketoisovalerate fer 99.8 5.5E-19 1.2E-23 166.6 17.5 234 93-337 14-300 (300)
45 COG1154 Dxs Deoxyxylulose-5-ph 99.8 7.1E-19 1.5E-23 175.7 17.4 226 26-271 10-283 (627)
46 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 7E-19 1.5E-23 154.2 13.1 114 141-266 46-171 (172)
47 cd02013 TPP_Xsc_like Thiamine 99.8 4.2E-19 9.1E-24 159.1 11.7 119 142-269 52-181 (196)
48 cd00568 TPP_enzymes Thiamine p 99.8 9.7E-19 2.1E-23 151.8 11.9 115 140-266 43-168 (168)
49 cd02006 TPP_Gcl Thiamine pyrop 99.8 1.4E-18 3.1E-23 156.3 11.6 121 141-269 55-196 (202)
50 PLN02225 1-deoxy-D-xylulose-5- 99.8 5.7E-18 1.2E-22 174.9 16.5 226 26-270 84-367 (701)
51 cd02002 TPP_BFDC Thiamine pyro 99.8 2.1E-18 4.5E-23 151.9 10.6 112 143-266 49-178 (178)
52 PRK06163 hypothetical protein; 99.8 1.4E-17 3.1E-22 149.8 15.4 130 142-288 56-189 (202)
53 cd02014 TPP_POX Thiamine pyrop 99.7 1.4E-17 3E-22 146.9 13.0 116 141-268 49-174 (178)
54 cd02010 TPP_ALS Thiamine pyrop 99.7 1.3E-17 2.7E-22 147.2 12.7 116 141-268 46-171 (177)
55 cd03371 TPP_PpyrDC Thiamine py 99.7 4.5E-17 9.8E-22 145.1 15.3 118 141-270 46-166 (188)
56 cd02015 TPP_AHAS Thiamine pyro 99.7 1.8E-17 3.9E-22 147.2 12.5 115 142-268 49-175 (186)
57 cd02001 TPP_ComE_PpyrDC Thiami 99.7 1.9E-17 4.1E-22 143.4 11.9 113 142-267 41-155 (157)
58 cd03372 TPP_ComE Thiamine pyro 99.7 4.9E-17 1.1E-21 143.8 14.6 115 142-270 41-158 (179)
59 TIGR03846 sulfopy_beta sulfopy 99.7 6E-17 1.3E-21 143.4 14.8 113 142-268 41-157 (181)
60 cd02003 TPP_IolD Thiamine pyro 99.7 2.5E-17 5.4E-22 148.6 12.1 117 141-269 46-186 (205)
61 cd02008 TPP_IOR_alpha Thiamine 99.7 6.3E-17 1.4E-21 142.8 14.3 117 141-266 49-176 (178)
62 PF02775 TPP_enzyme_C: Thiamin 99.7 1.1E-16 2.3E-21 137.7 11.1 114 141-264 26-153 (153)
63 cd02009 TPP_SHCHC_synthase Thi 99.7 8.8E-17 1.9E-21 141.5 10.8 112 142-266 50-174 (175)
64 cd02005 TPP_PDC_IPDC Thiamine 99.7 2.8E-16 6E-21 139.4 12.2 117 141-268 48-175 (183)
65 PRK07524 hypothetical protein; 99.7 2E-16 4.3E-21 162.0 12.7 118 142-271 406-533 (535)
66 COG0028 IlvB Thiamine pyrophos 99.7 2.9E-16 6.3E-21 160.6 11.9 117 141-269 406-533 (550)
67 PRK08327 acetolactate synthase 99.7 4.6E-16 9.9E-21 160.4 13.3 119 142-266 429-566 (569)
68 TIGR01504 glyox_carbo_lig glyo 99.7 3.1E-16 6.7E-21 162.2 10.9 120 142-269 417-557 (588)
69 PRK12474 hypothetical protein; 99.7 5.9E-16 1.3E-20 157.9 11.9 113 142-266 388-518 (518)
70 PRK06154 hypothetical protein; 99.7 8.3E-16 1.8E-20 158.4 13.1 118 142-268 430-556 (565)
71 cd03375 TPP_OGFOR Thiamine pyr 99.6 1.3E-15 2.9E-20 136.2 12.2 115 142-266 50-183 (193)
72 PRK08266 hypothetical protein; 99.6 1.7E-15 3.6E-20 155.4 14.1 118 142-271 401-529 (542)
73 PRK07092 benzoylformate decarb 99.6 1.4E-15 3E-20 155.6 13.2 113 142-266 406-529 (530)
74 TIGR03297 Ppyr-DeCO2ase phosph 99.6 4.6E-15 9.9E-20 144.4 15.8 133 141-288 219-354 (361)
75 PRK06725 acetolactate synthase 99.6 1.2E-15 2.6E-20 157.3 12.4 115 142-268 421-546 (570)
76 PRK09107 acetolactate synthase 99.6 1.6E-15 3.4E-20 157.3 12.6 115 142-268 429-555 (595)
77 TIGR02418 acolac_catab acetola 99.6 1.6E-15 3.5E-20 155.4 12.5 116 142-269 407-532 (539)
78 PRK09124 pyruvate dehydrogenas 99.6 2.4E-15 5.1E-20 155.3 13.7 116 141-268 406-531 (574)
79 PRK07586 hypothetical protein; 99.6 1.5E-15 3.2E-20 154.8 11.9 113 142-266 384-514 (514)
80 PRK11269 glyoxylate carboligas 99.6 1.1E-15 2.4E-20 158.3 11.1 119 142-268 418-557 (591)
81 PRK06546 pyruvate dehydrogenas 99.6 2.7E-15 5.8E-20 155.0 13.7 116 142-269 407-532 (578)
82 cd03376 TPP_PFOR_porB_like Thi 99.6 2.4E-15 5.3E-20 138.4 11.9 119 139-267 58-200 (235)
83 PRK05858 hypothetical protein; 99.6 1.7E-15 3.6E-20 155.4 12.0 115 142-268 406-531 (542)
84 COG2609 AceE Pyruvate dehydrog 99.6 8E-14 1.7E-18 140.6 22.7 227 78-317 119-435 (887)
85 PRK07418 acetolactate synthase 99.6 2.5E-15 5.4E-20 156.3 11.9 116 141-268 432-560 (616)
86 PRK08199 thiamine pyrophosphat 99.6 4.1E-15 8.9E-20 153.0 13.2 116 141-268 413-539 (557)
87 PRK07064 hypothetical protein; 99.6 3.2E-15 6.9E-20 153.3 12.3 114 142-267 404-528 (544)
88 PRK06457 pyruvate dehydrogenas 99.6 4.5E-15 9.7E-20 152.5 13.4 115 142-268 395-520 (549)
89 PRK07979 acetolactate synthase 99.6 4.6E-15 1E-19 153.2 13.4 118 142-268 420-549 (574)
90 PRK06112 acetolactate synthase 99.6 6E-15 1.3E-19 152.4 13.7 115 142-268 436-561 (578)
91 TIGR02720 pyruv_oxi_spxB pyruv 99.6 6.5E-15 1.4E-19 152.1 13.8 118 142-269 407-534 (575)
92 TIGR03393 indolpyr_decarb indo 99.6 2.6E-15 5.5E-20 154.0 10.7 114 142-267 403-527 (539)
93 PRK07710 acetolactate synthase 99.6 7.7E-15 1.7E-19 151.4 14.2 115 142-268 423-549 (571)
94 PRK06882 acetolactate synthase 99.6 6.7E-15 1.5E-19 151.9 13.4 116 142-268 420-547 (574)
95 PLN02573 pyruvate decarboxylas 99.6 4.6E-15 1E-19 153.2 12.1 116 142-267 427-552 (578)
96 PRK06965 acetolactate synthase 99.6 7.5E-15 1.6E-19 152.0 13.4 116 142-268 436-563 (587)
97 PRK08322 acetolactate synthase 99.6 7.4E-15 1.6E-19 150.7 13.1 115 142-268 405-529 (547)
98 PRK08979 acetolactate synthase 99.6 8.8E-15 1.9E-19 151.0 13.3 116 142-268 420-547 (572)
99 PRK08617 acetolactate synthase 99.6 5.9E-15 1.3E-19 151.7 11.8 115 142-268 413-537 (552)
100 cd02018 TPP_PFOR Thiamine pyro 99.6 6E-15 1.3E-19 136.0 10.3 120 141-267 62-203 (237)
101 TIGR03254 oxalate_oxc oxalyl-C 99.6 1.3E-14 2.8E-19 149.2 13.9 114 142-268 416-539 (554)
102 PRK08611 pyruvate oxidase; Pro 99.6 9.7E-15 2.1E-19 150.8 12.9 116 142-269 407-532 (576)
103 PRK06466 acetolactate synthase 99.6 1.3E-14 2.8E-19 149.8 13.7 116 142-268 422-549 (574)
104 PRK08273 thiamine pyrophosphat 99.6 1.4E-14 3.1E-19 150.2 13.8 117 142-269 414-548 (597)
105 TIGR03457 sulphoacet_xsc sulfo 99.6 1.3E-14 2.8E-19 150.0 13.1 119 142-269 429-559 (579)
106 PRK08527 acetolactate synthase 99.6 1.8E-14 3.8E-19 148.5 13.9 116 142-269 413-540 (563)
107 PRK08155 acetolactate synthase 99.6 1.6E-14 3.5E-19 148.8 13.6 115 142-268 418-544 (564)
108 CHL00099 ilvB acetohydroxyacid 99.6 1.7E-14 3.7E-19 149.2 13.7 116 141-268 428-556 (585)
109 PRK06048 acetolactate synthase 99.6 2.3E-14 4.9E-19 147.7 14.2 115 142-268 413-539 (561)
110 PRK07525 sulfoacetaldehyde ace 99.6 1.2E-14 2.5E-19 150.6 12.1 121 141-270 433-565 (588)
111 PRK09628 oorB 2-oxoglutarate-a 99.6 1.3E-14 2.8E-19 136.4 10.9 114 143-267 68-201 (277)
112 PLN02470 acetolactate synthase 99.6 2.5E-14 5.4E-19 148.0 13.9 115 142-268 425-558 (585)
113 PRK06456 acetolactate synthase 99.6 2.2E-14 4.8E-19 148.0 13.3 115 142-268 420-546 (572)
114 PRK09259 putative oxalyl-CoA d 99.6 2.6E-14 5.7E-19 147.4 13.8 114 142-268 423-547 (569)
115 TIGR03394 indol_phenyl_DC indo 99.6 1.5E-14 3.3E-19 148.1 11.6 114 142-267 402-521 (535)
116 PRK05778 2-oxoglutarate ferred 99.6 3.8E-14 8.3E-19 134.5 13.4 134 143-291 70-224 (301)
117 TIGR00118 acolac_lg acetolacta 99.6 1.8E-14 4E-19 148.2 12.2 115 142-268 411-537 (558)
118 PRK08978 acetolactate synthase 99.6 2.7E-14 5.8E-19 146.7 13.3 115 142-268 400-526 (548)
119 PRK07789 acetolactate synthase 99.5 2E-14 4.3E-19 149.5 10.4 116 142-268 446-577 (612)
120 PRK06276 acetolactate synthase 99.5 6.3E-14 1.4E-18 145.1 13.2 115 142-268 418-544 (586)
121 PRK07282 acetolactate synthase 99.5 4.9E-14 1.1E-18 145.3 11.6 114 142-268 417-542 (566)
122 PRK07449 2-succinyl-5-enolpyru 99.5 2.7E-14 5.8E-19 147.3 9.1 112 142-266 424-548 (568)
123 PRK11869 2-oxoacid ferredoxin 99.5 1E-13 2.2E-18 130.2 11.1 114 143-266 60-192 (280)
124 PRK11866 2-oxoacid ferredoxin 99.5 3.3E-13 7.1E-18 126.8 12.3 115 142-266 58-191 (279)
125 PRK11867 2-oxoglutarate ferred 99.5 3.5E-13 7.6E-18 127.3 12.1 115 142-266 68-201 (286)
126 TIGR02177 PorB_KorB 2-oxoacid: 99.4 3.9E-13 8.4E-18 126.7 10.5 113 143-266 53-185 (287)
127 COG3961 Pyruvate decarboxylase 99.4 9.6E-13 2.1E-17 129.8 13.1 163 71-268 363-536 (557)
128 PF09364 XFP_N: XFP N-terminal 99.4 7.7E-13 1.7E-17 125.9 9.2 183 64-250 47-248 (379)
129 TIGR03336 IOR_alpha indolepyru 99.4 3.1E-12 6.7E-17 132.7 13.1 119 139-266 399-529 (595)
130 PRK11865 pyruvate ferredoxin o 99.3 1.1E-10 2.4E-15 110.6 18.8 124 137-266 63-210 (299)
131 PLN02980 2-oxoglutarate decarb 99.3 8.2E-12 1.8E-16 142.1 10.4 116 141-269 757-891 (1655)
132 KOG1185 Thiamine pyrophosphate 99.2 1.4E-10 2.9E-15 113.7 13.4 118 140-268 427-561 (571)
133 COG3962 Acetolactate synthase 99.0 5.6E-09 1.2E-13 102.0 15.2 117 141-269 442-577 (617)
134 KOG1184 Thiamine pyrophosphate 99.0 1.9E-09 4.1E-14 106.5 12.0 119 140-266 412-538 (561)
135 KOG4166 Thiamine pyrophosphate 99.0 5.6E-10 1.2E-14 107.8 7.3 116 142-269 523-649 (675)
136 COG3960 Glyoxylate carboligase 99.0 1E-09 2.3E-14 103.3 8.4 128 140-275 416-564 (592)
137 COG3957 Phosphoketolase [Carbo 98.7 2.2E-08 4.8E-13 102.1 8.2 205 31-246 13-257 (793)
138 COG1013 PorB Pyruvate:ferredox 98.6 1.3E-06 2.9E-11 82.9 15.4 115 142-266 69-203 (294)
139 cd03377 TPP_PFOR_PNO Thiamine 98.0 0.00023 4.9E-09 69.2 16.1 97 165-267 151-267 (365)
140 COG4231 Indolepyruvate ferredo 98.0 3.2E-05 7E-10 78.9 9.4 112 142-264 427-551 (640)
141 COG1165 MenD 2-succinyl-6-hydr 97.8 7.9E-05 1.7E-09 75.2 8.5 108 148-268 427-547 (566)
142 TIGR02176 pyruv_ox_red pyruvat 97.4 0.0011 2.3E-08 74.0 12.2 163 166-335 952-1162(1165)
143 PRK13030 2-oxoacid ferredoxin 97.2 0.0026 5.5E-08 70.5 11.1 117 142-264 467-600 (1159)
144 PRK09193 indolepyruvate ferred 97.1 0.0028 6.2E-08 70.0 10.6 118 141-264 479-614 (1165)
145 cd06586 TPP_enzyme_PYR Pyrimid 97.0 0.0096 2.1E-07 50.3 11.2 105 148-264 47-152 (154)
146 cd07035 TPP_PYR_POX_like Pyrim 97.0 0.0095 2.1E-07 50.8 10.7 106 148-264 46-153 (155)
147 cd07039 TPP_PYR_POX Pyrimidine 96.8 0.022 4.7E-07 49.6 11.7 105 150-264 52-156 (164)
148 TIGR03845 sulfopyru_alph sulfo 96.8 0.027 5.8E-07 48.7 12.2 107 146-265 44-153 (157)
149 cd07034 TPP_PYR_PFOR_IOR-alpha 96.7 0.014 3E-07 50.1 9.8 106 148-264 53-158 (160)
150 PF02776 TPP_enzyme_N: Thiamin 96.5 0.024 5.1E-07 49.5 9.8 109 148-265 51-160 (172)
151 PRK13029 2-oxoacid ferredoxin 96.5 0.017 3.7E-07 64.0 10.6 117 142-264 494-628 (1186)
152 cd07038 TPP_PYR_PDC_IPDC_like 96.4 0.043 9.3E-07 47.5 10.7 108 148-264 47-160 (162)
153 PRK07119 2-ketoisovalerate fer 95.6 0.11 2.3E-06 50.9 10.6 114 148-275 60-178 (352)
154 cd07037 TPP_PYR_MenD Pyrimidin 95.1 0.14 3.1E-06 44.4 8.8 106 149-264 48-160 (162)
155 PRK08659 2-oxoglutarate ferred 95.0 0.2 4.2E-06 49.5 10.5 118 147-275 59-178 (376)
156 TIGR03297 Ppyr-DeCO2ase phosph 94.9 0.15 3.2E-06 50.1 9.2 115 143-265 33-151 (361)
157 cd07033 TPP_PYR_DXS_TK_like Py 94.8 0.36 7.7E-06 41.4 10.2 101 147-264 50-154 (156)
158 PF01855 POR_N: Pyruvate flavo 94.6 0.15 3.3E-06 46.9 7.8 113 149-275 49-162 (230)
159 PRK08366 vorA 2-ketoisovalerat 94.4 0.41 8.8E-06 47.5 11.0 114 148-275 61-174 (390)
160 PRK08611 pyruvate oxidase; Pro 94.4 0.41 8.8E-06 49.9 11.5 107 149-265 56-162 (576)
161 TIGR03254 oxalate_oxc oxalyl-C 94.3 0.38 8.2E-06 49.8 11.1 108 150-265 54-162 (554)
162 COG0028 IlvB Thiamine pyrophos 94.3 0.37 8.1E-06 50.0 10.9 106 149-264 52-158 (550)
163 PRK07525 sulfoacetaldehyde ace 94.2 0.43 9.4E-06 49.8 11.4 106 150-265 57-162 (588)
164 PRK07524 hypothetical protein; 93.9 0.57 1.2E-05 48.2 11.4 109 149-265 52-162 (535)
165 PRK07064 hypothetical protein; 93.9 0.63 1.4E-05 48.0 11.6 108 150-265 55-164 (544)
166 PRK06457 pyruvate dehydrogenas 93.8 0.63 1.4E-05 48.1 11.4 105 151-265 54-158 (549)
167 PRK06112 acetolactate synthase 93.7 0.6 1.3E-05 48.6 11.2 106 150-265 63-169 (578)
168 PRK09259 putative oxalyl-CoA d 93.7 0.63 1.4E-05 48.3 11.3 108 150-265 61-169 (569)
169 TIGR01504 glyox_carbo_lig glyo 93.7 0.67 1.4E-05 48.5 11.5 108 150-266 55-163 (588)
170 TIGR03457 sulphoacet_xsc sulfo 93.6 0.55 1.2E-05 48.9 10.8 106 150-265 53-158 (579)
171 PRK11269 glyoxylate carboligas 93.5 0.61 1.3E-05 48.7 10.9 107 150-265 56-163 (591)
172 PRK08266 hypothetical protein; 93.5 0.72 1.6E-05 47.6 11.2 109 150-266 57-167 (542)
173 PRK07979 acetolactate synthase 93.4 0.65 1.4E-05 48.3 10.8 106 150-265 56-162 (574)
174 PRK07418 acetolactate synthase 93.2 0.82 1.8E-05 48.0 11.3 107 149-265 73-180 (616)
175 PRK06456 acetolactate synthase 93.2 0.77 1.7E-05 47.7 11.0 107 149-265 56-163 (572)
176 PRK06725 acetolactate synthase 93.2 0.71 1.5E-05 48.1 10.7 106 150-265 66-172 (570)
177 PRK06276 acetolactate synthase 93.1 0.85 1.8E-05 47.6 11.2 107 149-265 51-158 (586)
178 PRK08322 acetolactate synthase 93.1 0.86 1.9E-05 47.0 11.2 107 149-265 51-158 (547)
179 PLN02470 acetolactate synthase 93.1 0.72 1.6E-05 48.1 10.6 107 149-265 64-171 (585)
180 PRK06466 acetolactate synthase 93.1 0.77 1.7E-05 47.8 10.8 106 151-266 57-163 (574)
181 PRK07789 acetolactate synthase 93.1 0.81 1.8E-05 48.0 11.0 107 149-265 82-189 (612)
182 PRK08273 thiamine pyrophosphat 93.0 0.75 1.6E-05 48.1 10.6 107 150-266 56-163 (597)
183 PRK07586 hypothetical protein; 92.8 0.9 2E-05 46.5 10.8 108 149-266 52-160 (514)
184 PRK08978 acetolactate synthase 92.8 0.78 1.7E-05 47.4 10.3 107 149-265 51-158 (548)
185 TIGR03710 OAFO_sf 2-oxoacid:ac 92.8 0.6 1.3E-05 48.6 9.4 110 148-268 249-362 (562)
186 PRK08155 acetolactate synthase 92.7 0.98 2.1E-05 46.8 10.9 107 149-265 64-171 (564)
187 cd07036 TPP_PYR_E1-PDHc-beta_l 92.6 1.1 2.3E-05 39.1 9.4 100 147-263 55-164 (167)
188 PRK07710 acetolactate synthase 92.6 0.97 2.1E-05 47.0 10.7 108 149-266 66-174 (571)
189 TIGR00118 acolac_lg acetolacta 92.5 1.1 2.3E-05 46.5 10.9 106 150-265 53-159 (558)
190 PRK08199 thiamine pyrophosphat 92.5 1.1 2.5E-05 46.3 11.1 107 149-265 59-166 (557)
191 PRK09622 porA pyruvate flavodo 92.4 1.1 2.3E-05 44.9 10.3 112 148-273 68-181 (407)
192 TIGR00204 dxs 1-deoxy-D-xylulo 92.3 1.1 2.3E-05 47.3 10.7 104 147-264 363-467 (617)
193 PRK09627 oorA 2-oxoglutarate-a 92.2 0.96 2.1E-05 44.7 9.6 114 148-275 59-177 (375)
194 PF02779 Transket_pyr: Transke 92.2 1.9 4.2E-05 37.7 10.6 105 147-264 59-170 (178)
195 PRK06965 acetolactate synthase 92.2 1.4 3.1E-05 45.9 11.4 107 150-266 73-180 (587)
196 PRK09107 acetolactate synthase 92.1 1.1 2.3E-05 47.0 10.3 107 149-265 62-169 (595)
197 PRK08367 porA pyruvate ferredo 92.0 1.4 3E-05 43.8 10.6 113 148-274 62-176 (394)
198 TIGR03394 indol_phenyl_DC indo 91.9 1.2 2.6E-05 46.0 10.4 108 151-266 53-164 (535)
199 TIGR02720 pyruv_oxi_spxB pyruv 91.9 1.6 3.6E-05 45.4 11.4 106 151-266 53-158 (575)
200 PRK12474 hypothetical protein; 91.9 1.4 3.1E-05 45.2 10.8 106 150-265 57-163 (518)
201 PRK06882 acetolactate synthase 91.8 1.5 3.2E-05 45.6 11.0 107 150-266 56-163 (574)
202 PRK07282 acetolactate synthase 91.7 1.3 2.9E-05 45.9 10.5 107 149-265 61-168 (566)
203 PRK08617 acetolactate synthase 91.7 1.5 3.3E-05 45.3 10.8 105 151-265 57-162 (552)
204 PRK08979 acetolactate synthase 91.6 1.4 3.1E-05 45.8 10.7 107 149-265 55-162 (572)
205 cd01460 vWA_midasin VWA_Midasi 91.6 2.8 6E-05 39.4 11.5 84 167-251 166-257 (266)
206 PRK08327 acetolactate synthase 91.6 1.1 2.3E-05 46.7 9.7 108 150-265 64-179 (569)
207 PRK06048 acetolactate synthase 91.5 1.6 3.5E-05 45.3 10.8 107 149-265 58-165 (561)
208 TIGR02418 acolac_catab acetola 91.4 1.5 3.3E-05 45.1 10.5 106 151-266 51-157 (539)
209 COG4032 Predicted thiamine-pyr 90.9 0.99 2.1E-05 38.2 6.8 109 147-264 53-161 (172)
210 PTZ00089 transketolase; Provis 90.9 1.5 3.3E-05 46.5 10.0 100 148-264 415-519 (661)
211 PRK05858 hypothetical protein; 90.9 2.2 4.9E-05 44.0 11.1 107 149-265 55-162 (542)
212 PRK08527 acetolactate synthase 90.7 2.1 4.6E-05 44.4 10.9 107 149-265 54-161 (563)
213 CHL00099 ilvB acetohydroxyacid 90.6 2.2 4.7E-05 44.6 10.8 106 150-265 65-171 (585)
214 PRK09124 pyruvate dehydrogenas 89.8 2.9 6.2E-05 43.5 11.0 103 150-264 55-159 (574)
215 PRK11892 pyruvate dehydrogenas 89.8 2.8 6E-05 42.6 10.5 100 147-263 200-309 (464)
216 TIGR03336 IOR_alpha indolepyru 89.8 2.4 5.3E-05 44.4 10.4 109 149-274 59-169 (595)
217 PRK05444 1-deoxy-D-xylulose-5- 89.6 2.6 5.6E-05 44.1 10.4 102 148-264 333-436 (580)
218 PRK12571 1-deoxy-D-xylulose-5- 89.6 2.5 5.3E-05 44.8 10.3 102 148-264 373-476 (641)
219 PRK12315 1-deoxy-D-xylulose-5- 89.6 2.2 4.7E-05 44.6 9.9 103 147-264 331-434 (581)
220 TIGR00232 tktlase_bact transke 89.5 2 4.4E-05 45.5 9.6 101 149-264 409-512 (653)
221 PLN02573 pyruvate decarboxylas 89.4 2.3 5E-05 44.3 9.9 107 150-265 68-180 (578)
222 PLN02234 1-deoxy-D-xylulose-5- 89.2 2.8 6.1E-05 44.3 10.2 105 148-269 411-517 (641)
223 PLN02683 pyruvate dehydrogenas 89.1 4.4 9.5E-05 39.8 11.0 101 146-264 84-195 (356)
224 PRK07092 benzoylformate decarb 89.1 3.1 6.7E-05 42.8 10.5 106 150-265 62-169 (530)
225 KOG4166 Thiamine pyrophosphate 89.1 2.7 5.9E-05 41.9 9.3 149 104-264 90-248 (675)
226 PRK06154 hypothetical protein; 88.8 3.1 6.6E-05 43.3 10.3 91 167-266 84-175 (565)
227 PLN02582 1-deoxy-D-xylulose-5- 88.8 3.5 7.5E-05 43.9 10.6 104 147-264 409-513 (677)
228 PLN02225 1-deoxy-D-xylulose-5- 88.7 3.4 7.4E-05 44.0 10.5 104 147-264 434-538 (701)
229 PRK05899 transketolase; Review 88.5 3.1 6.7E-05 43.8 10.2 103 148-264 379-483 (624)
230 PRK06546 pyruvate dehydrogenas 88.4 3.7 8.1E-05 42.8 10.6 105 151-265 56-160 (578)
231 TIGR00173 menD 2-succinyl-5-en 88.2 1.6 3.5E-05 43.7 7.5 106 150-265 52-164 (432)
232 PRK12753 transketolase; Review 87.8 3.5 7.6E-05 43.9 10.0 100 148-264 414-518 (663)
233 PTZ00182 3-methyl-2-oxobutanat 86.4 7.3 0.00016 38.2 10.7 100 147-263 93-202 (355)
234 COG0674 PorA Pyruvate:ferredox 85.6 7.8 0.00017 38.1 10.5 112 147-270 58-169 (365)
235 PRK12754 transketolase; Review 84.6 6.3 0.00014 41.9 9.9 101 149-264 415-518 (663)
236 PRK09212 pyruvate dehydrogenas 84.5 9.8 0.00021 36.8 10.5 102 147-264 62-172 (327)
237 PLN02790 transketolase 83.6 6.5 0.00014 41.8 9.5 100 148-264 404-509 (654)
238 PLN02980 2-oxoglutarate decarb 82.2 4.8 0.0001 47.3 8.5 107 149-265 352-465 (1655)
239 COG0021 TktA Transketolase [Ca 81.3 6.2 0.00013 41.3 7.9 78 181-265 440-519 (663)
240 TIGR03393 indolpyr_decarb indo 79.6 12 0.00027 38.5 9.8 107 149-266 52-165 (539)
241 CHL00144 odpB pyruvate dehydro 78.3 21 0.00046 34.5 10.4 101 146-263 61-171 (327)
242 TIGR02176 pyruv_ox_red pyruvat 75.2 81 0.0018 36.0 15.1 112 149-273 64-175 (1165)
243 PF09851 SHOCT: Short C-termin 74.9 5.4 0.00012 24.6 3.4 27 295-322 3-29 (31)
244 COG3958 Transketolase, C-termi 74.9 22 0.00048 33.9 9.0 110 141-264 53-165 (312)
245 smart00861 Transket_pyr Transk 74.7 25 0.00054 30.0 8.9 101 148-264 61-164 (168)
246 COG1154 Dxs Deoxyxylulose-5-ph 73.6 22 0.00048 37.1 9.3 102 147-263 369-472 (627)
247 COG2205 KdpD Osmosensitive K+ 69.5 14 0.00031 39.9 7.1 95 165-266 249-343 (890)
248 PF13519 VWA_2: von Willebrand 68.7 17 0.00038 30.1 6.5 73 165-248 99-171 (172)
249 PF04273 DUF442: Putative phos 65.4 16 0.00034 29.6 5.2 46 218-266 47-95 (110)
250 COG1240 ChlD Mg-chelatase subu 63.7 49 0.0011 31.0 8.7 97 144-247 155-257 (261)
251 COG1303 Uncharacterized protei 62.9 21 0.00046 30.9 5.6 46 218-266 21-66 (179)
252 cd01453 vWA_transcription_fact 62.9 57 0.0012 28.5 8.8 71 165-249 107-178 (183)
253 COG1107 Archaea-specific RecJ- 61.8 13 0.00029 38.5 5.0 54 181-243 403-458 (715)
254 PRK13685 hypothetical protein; 59.5 95 0.0021 29.8 10.4 83 166-250 194-287 (326)
255 COG0079 HisC Histidinol-phosph 58.7 1.6E+02 0.0035 28.8 11.9 144 184-337 136-283 (356)
256 PRK13683 hypothetical protein; 57.3 15 0.00033 28.3 3.4 40 227-270 13-52 (87)
257 PRK10490 sensor protein KdpD; 56.2 50 0.0011 36.5 8.7 94 165-266 251-345 (895)
258 cd01451 vWA_Magnesium_chelatas 53.9 1.4E+02 0.0031 25.5 9.8 71 166-245 99-175 (178)
259 PRK07449 2-succinyl-5-enolpyru 53.5 44 0.00096 34.6 7.4 48 149-202 60-107 (568)
260 PRK05647 purN phosphoribosylgl 46.9 1.1E+02 0.0024 27.3 8.0 82 166-267 3-89 (200)
261 TIGR00239 2oxo_dh_E1 2-oxoglut 45.0 1.5E+02 0.0033 32.9 10.0 109 146-264 657-772 (929)
262 PRK06027 purU formyltetrahydro 44.9 1.4E+02 0.0031 28.2 8.8 83 163-268 88-175 (286)
263 PRK13010 purU formyltetrahydro 44.4 95 0.0021 29.5 7.5 54 164-236 93-149 (289)
264 TIGR02482 PFKA_ATP 6-phosphofr 44.1 52 0.0011 31.5 5.7 37 166-207 93-132 (301)
265 PLN02331 phosphoribosylglycina 43.6 1.1E+02 0.0024 27.6 7.5 54 167-237 2-58 (207)
266 PF01380 SIS: SIS domain SIS d 43.4 56 0.0012 26.0 5.2 35 165-201 54-88 (131)
267 COG3960 Glyoxylate carboligase 42.9 87 0.0019 30.6 6.9 48 216-265 115-163 (592)
268 COG0108 RibB 3,4-dihydroxy-2-b 41.7 97 0.0021 27.9 6.6 67 162-235 121-192 (203)
269 smart00115 CASc Caspase, inter 41.3 1.1E+02 0.0023 28.1 7.2 69 195-264 9-79 (241)
270 cd00640 Trp-synth-beta_II Tryp 41.3 1.5E+02 0.0031 26.8 8.1 39 187-237 67-105 (244)
271 TIGR00655 PurU formyltetrahydr 38.4 2.8E+02 0.0062 26.2 9.7 81 164-267 84-169 (280)
272 PRK13406 bchD magnesium chelat 38.4 1.7E+02 0.0036 30.8 8.8 94 145-249 472-582 (584)
273 PF06707 DUF1194: Protein of u 38.2 2.7E+02 0.0059 25.2 9.0 94 149-250 97-198 (205)
274 cd08325 CARD_CASP1-like Caspas 38.2 52 0.0011 25.1 3.9 36 294-329 15-50 (83)
275 KOG4426 Arginyl-tRNA synthetas 37.6 2E+02 0.0044 29.2 8.7 117 193-321 366-493 (656)
276 cd08323 CARD_APAF1 Caspase act 37.5 38 0.00082 26.2 3.0 27 297-323 16-42 (86)
277 PRK11032 hypothetical protein; 37.4 1E+02 0.0023 26.7 6.0 39 297-335 30-68 (160)
278 cd01467 vWA_BatA_type VWA BatA 37.1 1.9E+02 0.0042 24.3 7.8 71 165-235 102-175 (180)
279 COG2515 Acd 1-aminocyclopropan 36.1 3E+02 0.0064 26.6 9.2 110 165-292 63-176 (323)
280 TIGR00515 accD acetyl-CoA carb 35.6 81 0.0018 30.0 5.5 43 165-207 119-169 (285)
281 PF00926 DHBP_synthase: 3,4-di 35.2 82 0.0018 28.2 5.2 67 162-235 117-188 (194)
282 COG0299 PurN Folate-dependent 35.2 2.1E+02 0.0045 25.8 7.6 81 166-267 2-88 (200)
283 PF14399 Transpep_BrtH: NlpC/p 35.0 2.6E+02 0.0056 26.2 9.0 44 220-267 55-98 (317)
284 cd01987 USP_OKCHK USP domain i 35.0 2.2E+02 0.0047 22.2 7.4 64 177-240 11-74 (124)
285 COG0075 Serine-pyruvate aminot 34.8 1.1E+02 0.0023 30.5 6.4 14 187-200 97-110 (383)
286 PRK00278 trpC indole-3-glycero 34.0 3.5E+02 0.0076 25.1 9.5 94 156-267 74-170 (260)
287 PRK09404 sucA 2-oxoglutarate d 34.0 3.1E+02 0.0067 30.6 10.3 107 146-264 655-770 (924)
288 PRK07328 histidinol-phosphatas 33.4 1.2E+02 0.0025 28.2 6.2 77 182-262 179-256 (269)
289 cd05014 SIS_Kpsf KpsF-like pro 33.4 1.5E+02 0.0032 23.5 6.2 17 220-236 66-82 (128)
290 TIGR03186 AKGDH_not_PDH alpha- 33.0 4.1E+02 0.0088 29.6 10.9 122 137-264 560-688 (889)
291 PF06833 MdcE: Malonate decarb 32.5 2.7E+02 0.0059 25.7 8.2 44 165-208 28-79 (234)
292 cd00032 CASc Caspase, interleu 32.5 1.5E+02 0.0032 27.1 6.7 69 195-264 10-80 (243)
293 PRK00945 acetyl-CoA decarbonyl 32.5 3.4E+02 0.0074 23.7 8.7 36 166-201 35-71 (171)
294 PF10415 FumaraseC_C: Fumarase 32.2 53 0.0011 23.1 2.8 20 300-319 28-47 (55)
295 PF08312 cwf21: cwf21 domain; 32.0 1.2E+02 0.0026 20.5 4.4 30 298-328 14-43 (46)
296 PF07295 DUF1451: Protein of u 31.6 95 0.0021 26.5 4.8 40 296-335 19-58 (146)
297 TIGR00506 ribB 3,4-dihydroxy-2 31.3 1.4E+02 0.0031 26.8 6.1 67 162-235 122-193 (199)
298 cd08329 CARD_BIRC2_BIRC3 Caspa 31.0 58 0.0013 25.5 3.2 30 295-324 23-52 (94)
299 cd00763 Bacterial_PFK Phosphof 30.9 1.3E+02 0.0028 29.0 6.2 37 166-208 94-133 (317)
300 PF10925 DUF2680: Protein of u 30.6 1.8E+02 0.0038 20.8 5.3 46 284-329 6-52 (59)
301 cd08332 CARD_CASP2 Caspase act 30.4 1.3E+02 0.0027 23.3 5.0 25 297-321 22-46 (90)
302 TIGR03590 PseG pseudaminic aci 30.0 3.6E+02 0.0078 25.1 9.0 35 169-203 2-41 (279)
303 cd08330 CARD_ASC_NALP1 Caspase 29.9 60 0.0013 24.7 3.0 27 296-322 16-42 (82)
304 PRK06988 putative formyltransf 29.8 2.9E+02 0.0064 26.4 8.4 59 168-235 4-62 (312)
305 PLN02522 ATP citrate (pro-S)-l 29.5 3.1E+02 0.0068 29.0 9.1 87 163-255 220-319 (608)
306 PTZ00254 40S ribosomal protein 29.5 1.3E+02 0.0029 28.0 5.8 23 181-203 129-151 (249)
307 COG4231 Indolepyruvate ferredo 29.2 5.2E+02 0.011 27.5 10.4 50 223-276 134-183 (640)
308 cd08326 CARD_CASP9 Caspase act 28.7 63 0.0014 24.8 2.9 24 298-321 19-42 (84)
309 PRK06555 pyrophosphate--fructo 28.6 1.5E+02 0.0032 29.7 6.3 40 166-207 114-158 (403)
310 PRK05654 acetyl-CoA carboxylas 28.5 1.1E+02 0.0024 29.2 5.2 42 165-206 120-169 (292)
311 COG0205 PfkA 6-phosphofructoki 28.4 1.3E+02 0.0029 29.4 5.8 34 166-204 96-132 (347)
312 cd02991 UAS_ETEA UAS family, E 27.9 3.2E+02 0.007 22.0 8.6 82 178-265 2-84 (116)
313 PRK14072 6-phosphofructokinase 27.9 1E+02 0.0023 30.9 5.1 40 166-207 105-149 (416)
314 TIGR03436 acidobact_VWFA VWFA- 27.8 3.3E+02 0.0071 25.3 8.4 87 164-253 163-254 (296)
315 PRK04346 tryptophan synthase s 27.7 4E+02 0.0087 26.5 9.2 71 151-235 93-163 (397)
316 cd05710 SIS_1 A subgroup of th 27.7 1.4E+02 0.003 23.9 5.0 39 163-203 46-84 (120)
317 PRK01792 ribB 3,4-dihydroxy-2- 27.3 2.1E+02 0.0046 26.0 6.5 67 162-235 132-203 (214)
318 PRK09225 threonine synthase; V 27.2 3.2E+02 0.0068 27.9 8.5 27 15-41 20-46 (462)
319 cd08785 CARD_CARD9-like Caspas 27.1 1.2E+02 0.0025 23.5 4.2 26 298-323 19-44 (86)
320 PLN03013 cysteine synthase 27.0 3.4E+02 0.0074 27.4 8.6 38 188-237 193-230 (429)
321 cd08327 CARD_RAIDD Caspase act 26.8 73 0.0016 25.0 3.0 27 296-322 22-48 (94)
322 PRK00910 ribB 3,4-dihydroxy-2- 26.7 2.1E+02 0.0046 26.1 6.4 66 163-235 134-204 (218)
323 TIGR02442 Cob-chelat-sub cobal 26.4 2.1E+02 0.0046 30.3 7.4 81 146-235 538-633 (633)
324 PF09999 DUF2240: Uncharacteri 25.7 4.2E+02 0.0091 22.6 10.5 91 237-337 34-134 (144)
325 cd01465 vWA_subgroup VWA subgr 25.4 3.9E+02 0.0083 22.0 8.4 67 167-245 98-169 (170)
326 PRK06381 threonine synthase; V 25.4 5.7E+02 0.012 24.1 9.6 38 188-237 81-118 (319)
327 PRK08558 adenine phosphoribosy 25.3 5.3E+02 0.012 23.6 9.5 119 138-264 83-209 (238)
328 PRK05772 translation initiatio 25.2 3.2E+02 0.007 26.9 7.8 131 142-288 176-312 (363)
329 PRK01322 6-carboxyhexanoate--C 25.1 2.6E+02 0.0057 26.0 6.7 76 181-265 157-241 (242)
330 TIGR02483 PFK_mixed phosphofru 25.0 1.9E+02 0.0041 28.0 6.2 36 166-207 96-134 (324)
331 PRK03378 ppnK inorganic polyph 24.6 1.8E+02 0.0038 27.7 5.8 29 166-199 65-93 (292)
332 CHL00174 accD acetyl-CoA carbo 24.5 2.1E+02 0.0046 27.4 6.2 43 165-207 132-182 (296)
333 cd01450 vWFA_subfamily_ECM Von 24.5 2.6E+02 0.0057 22.5 6.4 38 164-201 102-140 (161)
334 PF06945 DUF1289: Protein of u 24.3 2.2E+02 0.0048 19.5 4.8 29 259-291 3-31 (51)
335 cd01452 VWA_26S_proteasome_sub 24.2 2E+02 0.0043 25.5 5.7 35 166-200 108-143 (187)
336 TIGR00075 hypD hydrogenase exp 24.1 7.1E+02 0.015 24.6 10.6 99 163-264 134-252 (369)
337 COG0498 ThrC Threonine synthas 23.9 3.5E+02 0.0077 27.1 8.0 68 165-250 127-194 (411)
338 COG1063 Tdh Threonine dehydrog 23.8 5.4E+02 0.012 24.8 9.2 52 149-204 151-203 (350)
339 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.6 1.5E+02 0.0034 24.1 4.7 39 164-203 61-99 (153)
340 cd05017 SIS_PGI_PMI_1 The memb 23.6 1.6E+02 0.0035 23.4 4.7 37 163-201 42-78 (119)
341 COG0769 MurE UDP-N-acetylmuram 23.6 8E+02 0.017 25.1 11.3 150 98-273 299-450 (475)
342 COG0044 PyrC Dihydroorotase an 23.5 3.6E+02 0.0078 27.2 8.0 94 168-266 144-256 (430)
343 PRK06830 diphosphate--fructose 23.5 1.6E+02 0.0036 29.8 5.6 38 166-206 174-217 (443)
344 PLN02618 tryptophan synthase, 23.0 5E+02 0.011 26.0 8.9 70 152-235 107-176 (410)
345 PF06506 PrpR_N: Propionate ca 22.9 1.5E+02 0.0032 25.7 4.6 83 167-254 78-168 (176)
346 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.7 1.9E+02 0.0042 22.8 5.0 38 163-202 45-82 (126)
347 TIGR00441 gmhA phosphoheptose 22.4 1.6E+02 0.0034 24.9 4.6 39 163-203 78-116 (154)
348 PRK03202 6-phosphofructokinase 22.4 2.1E+02 0.0045 27.7 5.9 71 166-242 95-176 (320)
349 cd04141 Rit_Rin_Ric Rit/Rin/Ri 22.4 3.3E+02 0.0072 22.9 6.7 57 192-252 106-162 (172)
350 PRK00414 gmhA phosphoheptose i 22.3 1.7E+02 0.0038 25.7 5.0 39 163-203 110-148 (192)
351 TIGR01117 mmdA methylmalonyl-C 22.2 1.1E+02 0.0025 31.5 4.3 14 193-206 154-167 (512)
352 cd01561 CBS_like CBS_like: Thi 22.2 6.4E+02 0.014 23.4 10.6 39 188-238 71-109 (291)
353 PF00205 TPP_enzyme_M: Thiamin 22.0 54 0.0012 26.8 1.6 34 165-198 11-44 (137)
354 PRK13936 phosphoheptose isomer 22.0 1.7E+02 0.0037 25.8 4.9 39 163-203 110-148 (197)
355 COG1797 CobB Cobyrinic acid a, 21.9 2.8E+02 0.0061 28.1 6.7 57 185-252 103-166 (451)
356 TIGR00315 cdhB CO dehydrogenas 21.8 98 0.0021 26.9 3.2 38 165-202 27-64 (162)
357 TIGR02530 flg_new flagellar op 21.8 2.1E+02 0.0045 22.7 4.7 23 300-322 21-44 (96)
358 TIGR00670 asp_carb_tr aspartat 21.7 3.4E+02 0.0074 25.9 7.2 77 148-235 130-208 (301)
359 cd02958 UAS UAS family; UAS is 21.7 3.9E+02 0.0085 20.8 7.1 81 179-265 3-84 (114)
360 PRK10886 DnaA initiator-associ 21.4 1.7E+02 0.0037 26.1 4.8 39 163-203 108-146 (196)
361 PF08806 Sep15_SelM: Sep15/Sel 21.4 56 0.0012 24.7 1.4 32 13-44 43-74 (78)
362 KOG0369 Pyruvate carboxylase [ 21.4 2.7E+02 0.0058 30.0 6.6 32 167-200 160-191 (1176)
363 PRK14077 pnk inorganic polypho 21.4 2.5E+02 0.0054 26.6 6.1 38 166-209 66-103 (287)
364 TIGR01244 conserved hypothetic 21.3 4.1E+02 0.0089 21.8 6.8 42 221-266 50-95 (135)
365 PF04748 Polysacc_deac_2: Dive 21.2 3.3E+02 0.0071 24.6 6.6 46 220-266 133-183 (213)
366 COG3360 Uncharacterized conser 21.1 2E+02 0.0042 21.3 4.0 44 230-274 7-50 (71)
367 PRK13938 phosphoheptose isomer 21.1 2.3E+02 0.005 25.2 5.5 42 161-204 110-151 (196)
368 PRK06740 histidinol-phosphatas 21.0 4.1E+02 0.0088 25.7 7.6 74 181-257 240-314 (331)
369 PF10642 Tom5: Mitochondrial i 21.0 1.9E+02 0.0041 20.0 3.8 25 309-333 8-32 (49)
370 PTZ00286 6-phospho-1-fructokin 20.8 2.2E+02 0.0048 29.0 5.9 40 166-207 178-222 (459)
371 cd05007 SIS_Etherase N-acetylm 20.8 1.8E+02 0.0038 27.1 4.9 39 163-203 117-155 (257)
372 PF04695 Pex14_N: Peroxisomal 20.7 1.4E+02 0.003 25.0 3.8 32 294-326 20-51 (136)
373 cd01671 CARD Caspase activatio 20.6 1.4E+02 0.003 21.9 3.4 27 296-322 14-40 (80)
374 PLN02569 threonine synthase 20.6 5.9E+02 0.013 26.1 9.0 46 187-244 204-249 (484)
375 cd02991 UAS_ETEA UAS family, E 20.5 1.4E+02 0.0029 24.2 3.6 33 167-201 52-84 (116)
376 PRK09932 glycerate kinase II; 20.5 4E+02 0.0087 26.5 7.5 34 168-201 286-324 (381)
377 PLN02564 6-phosphofructokinase 20.5 2.3E+02 0.0049 29.2 5.9 40 166-207 178-222 (484)
378 PF05014 Nuc_deoxyrib_tr: Nucl 20.3 1.7E+02 0.0036 23.1 4.1 38 167-205 64-101 (113)
379 smart00114 CARD Caspase recrui 20.2 1E+02 0.0022 23.3 2.7 24 299-322 24-47 (88)
380 cd01415 SAICAR_synt_PurC bacte 20.1 2E+02 0.0043 26.5 4.9 43 294-337 123-165 (230)
381 cd01822 Lysophospholipase_L1_l 20.0 3.5E+02 0.0075 22.4 6.3 26 238-264 82-107 (177)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.9e-86 Score=627.10 Aligned_cols=324 Identities=37% Similarity=0.624 Sum_probs=309.4
Q ss_pred CeeEeeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhhHHHHHHHhcCCCC-c
Q 019322 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~-~~~~~~G~Ea~~v~~~~~l~~~-D 88 (343)
+.+++++++|+...+.... .+++++++++|+.|+++|.||+++..++++|+++ |+|+++||||+++|++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5689999999998776444 7999999999999999999999999999999997 9999999999999999999966 9
Q ss_pred EEEccCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCC-e
Q 019322 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (343)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~-~ 167 (343)
|++++||+|+++|++|+|+.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999998888999999999999999999999999999554 9
Q ss_pred EEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHH
Q 019322 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (343)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~ 247 (343)
++|++|||+++||.|||+||+|+.|+|||||+|+||+|+||++...+...+.++.++.+||+|+++|||+|+.+|+++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777766677789999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 019322 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVI 327 (343)
Q Consensus 248 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 327 (343)
+|++++|+++||+|||++|||++|||++|||..||+++|+++|+ ++|||.+++++|+++|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q 019322 328 LVSLTISKYG 337 (343)
Q Consensus 328 ~a~~~a~~~~ 337 (343)
+|++.|++..
T Consensus 321 ea~e~a~~~p 330 (358)
T COG1071 321 EAVEFAEASP 330 (358)
T ss_pred HHHHHHHhCC
Confidence 9999998764
No 2
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=8.7e-76 Score=567.47 Aligned_cols=304 Identities=28% Similarity=0.446 Sum_probs=291.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCHHH
Q 019322 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (343)
Q Consensus 31 ~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~ 109 (343)
..+|+++++++|+.|+++|.||+++.+++++|++ +|+|++.||||+++|++.+|+++||++++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHH
Q 019322 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (343)
Q Consensus 110 ~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A 189 (343)
+|++++|+.+|+|+|+++++|+.+++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 190 ~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
+.|+||+||||+||+|+++++...+....++++++ +++|+++|||+|+.+|+++++.|++++|+ ++|+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999887777677777655 68999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 270 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 270 ~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
+|||++|++..||+++|++.|++++|||.+|+++|+++|+||++++++++++++++|++++++|++.-
T Consensus 262 ~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p 329 (362)
T PLN02269 262 HGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESP 329 (362)
T ss_pred CCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998778999999999975699999999999999999999999999999999999999998864
No 3
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2e-74 Score=555.97 Aligned_cols=306 Identities=25% Similarity=0.414 Sum_probs=293.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCHH
Q 019322 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (343)
Q Consensus 30 ~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (343)
.+.+|+++++++|+.|+++|.||+++.+++++|++ +|+|++.||||++++++.+|+++|++|++||+|+++|++|+++.
T Consensus 14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~ 93 (341)
T CHL00149 14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK 93 (341)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence 45799999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhccccc-------CCCeEEEEeCccccCcch
Q 019322 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (343)
Q Consensus 109 ~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (343)
++|++++|+.+|+++|+++++|+.++..++++.+|+||+++|.|+|+|+|.|+.+ ++++|||++|||++++|.
T Consensus 94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~ 173 (341)
T CHL00149 94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ 173 (341)
T ss_pred HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence 9999999999999999999999998888888889999999999999999998876 689999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 019322 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (343)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~l 261 (343)
+||+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+++.++++|++++|++++|+|
T Consensus 174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 253 (341)
T CHL00149 174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL 253 (341)
T ss_pred HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999998777767789999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 262 Ie~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|++..
T Consensus 254 Iev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p 327 (341)
T CHL00149 254 IEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSP 327 (341)
T ss_pred EEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999985 5799999999998 699999999999999999999999999999999999999999843
No 4
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=5.8e-74 Score=548.30 Aligned_cols=301 Identities=29% Similarity=0.486 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCHHHHHHH
Q 019322 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (343)
Q Consensus 35 ~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~~ 113 (343)
+++++++|+.|+++|.||+++.+++++|++ +|+|++.||||++++++.+|+++||+|++||+|+++|++|++++++|++
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999999999999 5889999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCC
Q 019322 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (343)
Q Consensus 114 ~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~ 193 (343)
++|+.+|+|+|+++++|+.+++.|+++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.+||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 194 Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
+|+||||.||+|+++++...+.+..++++++++||+++++|||+|+.+|++++++|++++|++++|+|||+.|||.+|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999998877777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 274 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 274 ~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|++++++|++..
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p 302 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSP 302 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99876 699999999998 699999999999999999999999999999999999999998753
No 5
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.9e-74 Score=526.70 Aligned_cols=338 Identities=64% Similarity=1.073 Sum_probs=328.9
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHH
Q 019322 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (343)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~ 80 (343)
|+||+++....+|.|||+|.+|.+.+++..+.++.+..++||+.|+++..+|+.+.+.+|||+|.||.++.|+|++-+|.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEccCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcc
Q 019322 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (343)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k 160 (343)
+++|.|+|++++.||..|+++++|+++++++.+.+|+..+..+|++||+|+++++.|++..+++|..++|.|+|+|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCH
Q 019322 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (343)
Q Consensus 161 ~~~~~-~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 239 (343)
+..++ +.+||++|||+.+||.+|.++|+|+..+.|+||+|-||+|+||||+++++.+..++-++.+||+..++|||||+
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 76554 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHH
Q 019322 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELR 319 (343)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~ 319 (343)
.+||.|+++|.+.+-..++|+|||++|||.++||++||...||+.+||+-|.+.++||.|||+|+..+|||+++...+++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~r 370 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELR 370 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHH
Confidence 99999999999999888999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 019322 320 SSVRKQVILVSLTISKYGL 338 (343)
Q Consensus 320 ~~~~~~v~~a~~~a~~~~~ 338 (343)
++++++|-+++..|+|...
T Consensus 371 k~~rk~vl~a~~~aEk~~K 389 (432)
T KOG1182|consen 371 KNIRKKVLEAIAAAEKKEK 389 (432)
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 9999999999999999754
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1.4e-72 Score=554.96 Aligned_cols=307 Identities=26% Similarity=0.411 Sum_probs=294.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCH
Q 019322 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (343)
Q Consensus 29 ~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (343)
..+.+++++++++|+.|+++|.||+++.+++++|++ +|+|++.||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 456899999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhccccc-------CCCeEEEEeCccccCcc
Q 019322 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG 180 (343)
Q Consensus 108 ~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~eG 180 (343)
+++|++++|+.+|+++|+++++|+.+++.++++.+++||.++|+|+|+|+|.|+.+ ++++|||++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999998889999999999999999999999999875 58899999999999999
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 019322 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (343)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~ 260 (343)
.|||+||+|+.|+|||||||+||+|+++++...+...+++++++++||+++++|||+|+.+|++++++|++++|++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999877776778899999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 261 LIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 261 lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
|||+.|||.+|||++|++ .||+++|+++|+ ++|||.+|+++|+++|++|++++++|+++++++|+++++.|++.-
T Consensus 319 LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p 393 (433)
T PLN02374 319 LVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASP 393 (433)
T ss_pred EEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999865 699999999998 699999999999999999999999999999999999999998753
No 7
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-73 Score=523.70 Aligned_cols=322 Identities=28% Similarity=0.446 Sum_probs=300.7
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCc
Q 019322 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDD 88 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~v~~~~~l~~~D 88 (343)
..+..+++...|.. |...-.+++++.+++|+.|+++|++|..+..++++++| +|+|++.||||+++|+-.++++.|
T Consensus 36 ~~~~~~~~~~l~~~---p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D 112 (394)
T KOG0225|consen 36 FESSPFELHKLEEG---PSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSD 112 (394)
T ss_pred ccccceeEEEccCC---CCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCC
Confidence 33344555443321 33345789999999999999999999999999999999 599999999999999999999999
Q ss_pred EEEccCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeE
Q 019322 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (343)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 168 (343)
.++++||+|++.+.+|.++.++|+|++|+.+|+++|.+++||+..+ +|++.+|++|.|+|+++|+|+|.|+++.+.++
T Consensus 113 ~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~ 190 (394)
T KOG0225|consen 113 SIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVC 190 (394)
T ss_pred ceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceE
Confidence 9999999999999999999999999999999999999999998754 59999999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHH
Q 019322 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (343)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~ 248 (343)
+++.|||+.+||.++|++|+|++|+||+||||+||.|++.|+.......+++.++. .| +|+++|||.|+.+|.+|.+.
T Consensus 191 ~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~Kf 268 (394)
T KOG0225|consen 191 FALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKF 268 (394)
T ss_pred EEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999988889999998 45 99999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 019322 249 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVIL 328 (343)
Q Consensus 249 a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (343)
|+++++.++||+++|+.|||..|||.+|+...||++||++..+.+||||..++++|++.++.|++|+++|+++++++|++
T Consensus 269 A~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVde 348 (394)
T KOG0225|consen 269 AKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDE 348 (394)
T ss_pred HHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999999987899999999999999999999999999999999999
Q ss_pred HHHHHhhcCC
Q 019322 329 VSLTISKYGL 338 (343)
Q Consensus 329 a~~~a~~~~~ 338 (343)
+++.|++-..
T Consensus 349 av~~A~~~p~ 358 (394)
T KOG0225|consen 349 AVAFATASPE 358 (394)
T ss_pred HHHHhhcCCC
Confidence 9999987543
No 8
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=3.8e-72 Score=531.49 Aligned_cols=292 Identities=42% Similarity=0.717 Sum_probs=283.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCHHHHHHHhhcCCC
Q 019322 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (343)
Q Consensus 41 ~~~~m~~~R~~e~~~~~~~~~g~i~-~~~~~~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~ 119 (343)
+|+.|+++|.||+++.+++++|+++ |+|++.||||++++++.+|+++|+++++||+|+++|++|+++.++|++++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE
Q 019322 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (343)
Q Consensus 120 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v 199 (343)
|+++|+++++|+..+..++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+|++|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCC
Q 019322 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279 (343)
Q Consensus 200 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~ 279 (343)
|+||+|+++++.....+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|||.+|||++|||.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999998877777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 019322 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTI 333 (343)
Q Consensus 280 ~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a 333 (343)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 69999999999999999999999999999999999999875
No 9
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.5e-71 Score=536.86 Aligned_cols=314 Identities=41% Similarity=0.652 Sum_probs=295.8
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEEc
Q 019322 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~~~D~v~~ 92 (343)
|.+||++++|...++...+.+|+++++++|+.|+++|.||+++.+++++|+++|+|+++||||+++|++.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 57999999998766543467999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEe
Q 019322 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (343)
Q Consensus 93 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 172 (343)
+||+|+++|++|+++.++|++++|+.+|.+ ..+..++++.++++|.++|.|+|+|+|.|+.+++++|||++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 999999999999999999999999864421 13567899999999999999999999999999999999999
Q ss_pred CccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHH
Q 019322 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (343)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~ 252 (343)
|||++++|.++|+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+|++++++|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776666789999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019322 253 AIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLT 332 (343)
Q Consensus 253 ~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 332 (343)
+|++++|+|||++|||.+|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988999999999998 5999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 019322 333 ISKY 336 (343)
Q Consensus 333 a~~~ 336 (343)
|++.
T Consensus 311 a~~~ 314 (341)
T TIGR03181 311 ALAL 314 (341)
T ss_pred HHhC
Confidence 9874
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=2.5e-71 Score=526.66 Aligned_cols=295 Identities=39% Similarity=0.634 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCHHHHHHHhhcCCCCC
Q 019322 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (343)
Q Consensus 42 ~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~ 121 (343)
|+.|+..|..|.++..+.++|+.+|+|++.|||+++++++.+|+++||++++||+|+++|++|+++.++|++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 56666666666666677778877899999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEE
Q 019322 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 122 ~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (343)
+.|+. +.|+..++.++++.++++|.++|+|+|+|+|.|+.+.+.+++|++|||+++||.|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 66666 67777777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCC
Q 019322 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 281 (343)
Q Consensus 202 nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Y 281 (343)
||+|++||+...+++..+++++|++||+|+++|||+|+.+|++++++|++++|+++||+|||++|||++|||++|||..|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 282 RPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 282 r~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
|+++|++.|++.+|||.+|+++|+++|++|++++++|+++++++|++++++|++..
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p 295 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASP 295 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998876789999999999999999999999999999999999999998753
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.1e-58 Score=485.84 Aligned_cols=301 Identities=15% Similarity=0.149 Sum_probs=272.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHh------cCCCCcEEEc-cCcchHHHHH--
Q 019322 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (343)
Q Consensus 32 ~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~------~l~~~D~v~~-~yR~~~~~l~-- 102 (343)
.+|+++++++|+.|+++|.||+++.++|..++ +| ++.|||++++++.. +++++|++++ +||||++.|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~K-rf--~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQK-RF--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cc--cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 78999999999999999999999999998877 34 68999999999888 5668999999 6999999998
Q ss_pred cCCCHHHHHHHhhcCC--CCCCCCCCcccccCCCC-----CC-----cccccccccCchHHHHHHHHhcccccCC-----
Q 019322 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----HN-----YFTVSSTIATQLPHAVGAAYALKMDRKD----- 165 (343)
Q Consensus 103 ~G~~~~~~~~~~~g~~--~~~~~G~~~~~h~~~~~-----~~-----~~~~~g~lG~~lp~A~G~A~a~k~~~~~----- 165 (343)
+|+|++++|++++|+. ++.+.++...+|++... -+ ...+++++|.+.|+|+|+|+|.|+.+.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999986 33333444566665432 11 1234689999999999999999998777
Q ss_pred -CeEEEEeCcccc-CcchHHHHHHHHHhCCCC---EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHH
Q 019322 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (343)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~ 240 (343)
.++||++|||++ +||.|||+||+|+.|++| +||||+||+|+++|+...+.+..+++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999888877888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHH
Q 019322 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (343)
Q Consensus 241 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~ 320 (343)
+|+.+++.|++++|+++||+|||++|||.+|||++|+|. ||+++|++.|++++||+.+|+++|+++|++|++++++|++
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~ 500 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVN 500 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999885 9999999999866899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 019322 321 SVRKQVILVSLTISKY 336 (343)
Q Consensus 321 ~~~~~v~~a~~~a~~~ 336 (343)
+++++|++|+++|+++
T Consensus 501 ~~~~~v~~a~~~A~~~ 516 (924)
T PRK09404 501 EYRDALDAGFEVVKEW 516 (924)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999976
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=9.1e-54 Score=448.99 Aligned_cols=304 Identities=16% Similarity=0.157 Sum_probs=273.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcC------CCCcEEEcc-CcchHHHHH
Q 019322 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW 102 (343)
Q Consensus 30 ~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l------~~~D~v~~~-yR~~~~~l~ 102 (343)
...+|+++.+++++.|+.+..||+++.++|..-| +| +..|.|++..++-..+ +.+|+++++ ||||.+.|+
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~K-RF--slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAK-RF--SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ee--ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 4578999999999999999999999999986443 56 6799999887765544 468999997 999999999
Q ss_pred --cCCCHHHHHHHhhcCCCC-CCCCCCcc-cccCC-----------CCCCcccccccccCchHHHHHHHHhcccccC---
Q 019322 103 --RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK--- 164 (343)
Q Consensus 103 --~G~~~~~~~~~~~g~~~~-~~~G~~~~-~h~~~-----------~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~--- 164 (343)
+|+|++++|+++.|+..+ .+.|++.. +|++. .+..+.+++|+|+...|+|+|.|+|.|+.+.
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~ 339 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP 339 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence 999999999999998765 34466654 89883 2345678899999999999999999998765
Q ss_pred ---CCeEEEEeCcccc-CcchHHHHHHHHHhCCCCE---EEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCC
Q 019322 165 ---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (343)
Q Consensus 165 ---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpv---i~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (343)
+.++||++|||++ +||.|||+||+|+.|++|+ ||||+||+|+++|+.....+...++++|++||+|+++|||+
T Consensus 340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~ 419 (929)
T TIGR00239 340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNAD 419 (929)
T ss_pred cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCC
Confidence 5799999999997 8999999999999999997 99999999999998877777778999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHH
Q 019322 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (343)
Q Consensus 238 d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~ 317 (343)
|+++|+.+++.|++++|+++||+|||++|||++|||++|+|..||+ +|++.|++++||+.+|+++|+++|++|++++++
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~ 498 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTE 498 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999988997 778888766899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 019322 318 LRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 318 i~~~~~~~v~~a~~~a~~~~ 337 (343)
|+++++++|++|++.++++.
T Consensus 499 i~~~~~~~v~~a~~~~~~~~ 518 (929)
T TIGR00239 499 MVNLYRDALEAADCVVPSWR 518 (929)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 99999999999999987643
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=6.3e-50 Score=369.91 Aligned_cols=230 Identities=19% Similarity=0.225 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-CcchHHHHH--cCCCHHHHHHHhhcCCC--
Q 019322 51 MDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA-- 119 (343)
Q Consensus 51 ~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~~------~D~v~~~-yR~~~~~l~--~G~~~~~~~~~~~g~~~-- 119 (343)
||+++.++|..-+ +| ++.|+|++++++...+++ +|+++++ ||||.++|+ +|+|++++|++++|+.+
T Consensus 1 ~e~f~~~~f~~~k-rf--s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~ 77 (265)
T cd02016 1 FEQFLATKFPGQK-RF--GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFP 77 (265)
T ss_pred ChhhHHHhcCCCe-EE--EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCC
Confidence 5788888776433 34 689999999999999986 7999997 999999999 99999999999999887
Q ss_pred -CCCCCCCcccccCCCC-----------CCcccccccccCchHHHHHHHHhccccc-----CCCeEEEEeCcccc-Ccch
Q 019322 120 -DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGD 181 (343)
Q Consensus 120 -~~~~G~~~~~h~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~a~k~~~-----~~~~vv~~~GDG~~-~eG~ 181 (343)
+.+.++.+++|++... ..+.+++|+||.++|+|+|+|+|.|+++ .+.++||++|||++ +||.
T Consensus 78 ~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 78 EDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred CCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 5556788999997653 4567889999999999999999999987 47899999999997 6999
Q ss_pred HHHHHHHHHhCCCC---EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCC
Q 019322 182 FHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (343)
Q Consensus 182 ~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~g 258 (343)
|||+||+|+.|++| +||||+||+|+++|+...+.+..+++++|++||+|+++|||+|+++|++++++|++++|++++
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 999999999999999988888889999999999999999999999999999999999999999
Q ss_pred cEEEEEEEecCCCCCCCCCCCCCCCH
Q 019322 259 PILIEALTYRVGHHTTSDDSTKYRPV 284 (343)
Q Consensus 259 P~lIe~~t~R~~gHs~~dd~~~Yr~~ 284 (343)
|+|||++|||++|||++|+|. |++|
T Consensus 238 p~lIe~~tYR~~GHse~D~p~-~t~p 262 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEPS-FTQP 262 (265)
T ss_pred CEEEEEEEecCCCCCCcCCcc-ccCC
Confidence 999999999999999999875 5544
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.2e-37 Score=318.51 Aligned_cols=326 Identities=15% Similarity=0.141 Sum_probs=274.2
Q ss_pred CCCCeeEeeCCCCCC-CCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC
Q 019322 10 ERIPCYRVLDDDGQP-FPD---SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK 85 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~---~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~ 85 (343)
..+++.+|.|++.+. +++ ....+++.++.+.+++.+..+..||.++..+|--.| +| +..|-|.+...+-..|.
T Consensus 463 vg~EymhI~dpeqr~W~Q~rvE~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqk-RF--slEG~Es~iplld~~~~ 539 (1228)
T PRK12270 463 VGIEYMHIQDPEQRRWLQERVERPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQK-RF--SLEGGESLIPLLDAVLD 539 (1228)
T ss_pred heeeeeecCCHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccce-ee--eecchhhHHHHHHHHHH
Confidence 567889999998743 332 246789999999999999999999999987774222 45 66899998877666664
Q ss_pred ------CCcEEEc-cCcchHHHHH--cCCCHHHHHHHhhcCCCCCC-CCCC-cccccCCCC-----------CCcccccc
Q 019322 86 ------NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYG-KGRQ-MPIHYGSNK-----------HNYFTVSS 143 (343)
Q Consensus 86 ------~~D~v~~-~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~-~G~~-~~~h~~~~~-----------~~~~~~~g 143 (343)
-+.++++ .|||+.+.|+ .|.+..++|.||-|+.+.-+ .|++ ..+|++... ..+..+++
T Consensus 540 ~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPS 619 (1228)
T PRK12270 540 QAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPS 619 (1228)
T ss_pred HHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCch
Confidence 3578888 7999998886 69999999999999876543 4655 778886521 11345689
Q ss_pred cccCchHHHHHHHHhcccc---c---CCCeEEEEeCcccc-CcchHHHHHHHHHhCCCC---EEEEEEcCCCcccccccc
Q 019322 144 TIATQLPHAVGAAYALKMD---R---KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISD 213 (343)
Q Consensus 144 ~lG~~lp~A~G~A~a~k~~---~---~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~ 213 (343)
+|.+.-|+.-|++.|.+.. + -....++++||++| .||+++|+||+|..+++| +|+||.||+++++|....
T Consensus 620 HLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~ 699 (1228)
T PRK12270 620 HLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPES 699 (1228)
T ss_pred hhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccc
Confidence 9999999999999998753 1 24578999999998 799999999999999998 899999999999999888
Q ss_pred ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhC
Q 019322 214 QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTT 293 (343)
Q Consensus 214 ~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~ 293 (343)
..+.....++++++++|++.|||+||++|..+.+.|+++++++++|++|+++|||..||+++|||+. .++..++....+
T Consensus 700 ~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSm-tqP~mY~~i~~~ 778 (1228)
T PRK12270 700 SRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSM-TQPLMYDLIDAK 778 (1228)
T ss_pred cccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCccc-CCchhhhhhhhc
Confidence 7777788899999999999999999999999999999999999999999999999999999999864 455555555434
Q ss_pred CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 019322 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYGLL 339 (343)
Q Consensus 294 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~ 339 (343)
+..-+.|++.|+.+|.+|++|.+++.++++.++++++.+.+....-
T Consensus 779 ~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~ 824 (1228)
T PRK12270 779 RSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKK 824 (1228)
T ss_pred chHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5556789999999999999999999999999999999999887653
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.5e-33 Score=289.38 Aligned_cols=226 Identities=17% Similarity=0.170 Sum_probs=184.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCC-CCcEEE--ccCcchHHHHH
Q 019322 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK-NDDFVV--PQYREPGVLLW 102 (343)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~v~~~~~l~-~~D~v~--~~yR~~~~~l~ 102 (343)
|.+...++.++|.++-..+ |.+ ..+..+++ ++++++.|+-.+.+++...++ |.|+++ ++||+|++.+.
T Consensus 9 p~d~~~l~~~~l~~l~~~i---r~~-----~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~ 80 (581)
T PRK12315 9 PADLKKLSLDELEQLASEI---RTA-----LLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKML 80 (581)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH-----HHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHH
Confidence 4455677767666665443 433 22233455 489999999555555544443 899999 89999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchH
Q 019322 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (343)
Q Consensus 103 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~ 182 (343)
+|.++..++.+++|+.+|++++.+ +.|.. ..+|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|++
T Consensus 81 ~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~ 152 (581)
T PRK12315 81 TGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLA 152 (581)
T ss_pred cCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchH
Confidence 999999999999999999888766 32311 2568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCCcccccccc---------ccCCccHHHhHhhcCceEEEE-eCCCHHHHHHHHHHHHHH
Q 019322 183 HAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREM 252 (343)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~---------~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~ 252 (343)
||+||+|+.|++|+||||+||+|++++++.. .....++.+++++|||+++.| ||||+.++.+++++|.+
T Consensus 153 ~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~- 231 (581)
T PRK12315 153 LEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD- 231 (581)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh-
Confidence 9999999999999999999999999987642 223345678999999999999 99999999999988654
Q ss_pred hhccCCcEEEEEEEecCCCC
Q 019322 253 AIGEGRPILIEALTYRVGHH 272 (343)
Q Consensus 253 ~r~~~gP~lIe~~t~R~~gH 272 (343)
.++|++|+++|+|..|.
T Consensus 232 ---~~gP~~i~~~T~kG~G~ 248 (581)
T PRK12315 232 ---IDHPIVLHIHTLKGKGY 248 (581)
T ss_pred ---CCCCEEEEEEeecCCCC
Confidence 68999999999998874
No 16
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-31 Score=236.13 Aligned_cols=218 Identities=19% Similarity=0.197 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-hHHHHHHHhcCC--C-------CcEEEccCcch------HHHH
Q 019322 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK--N-------DDFVVPQYREP------GVLL 101 (343)
Q Consensus 38 ~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~-Ea~~v~~~~~l~--~-------~D~v~~~yR~~------~~~l 101 (343)
..++-+....+|.---++.....+| +++++... |-+++.....|+ | .|+++.+ .|| +++.
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~G---H~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSG---HVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCC---CcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 3444455555565544444444444 33344433 344444444433 2 4766654 445 3445
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCcccccCC-CCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcc
Q 019322 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (343)
Q Consensus 102 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG 180 (343)
.+|+.+++-+..+.. .|+.+++|+.. ..+++..++|+||+|+++|+|+|++.|+++.+..|++++|||+++||
T Consensus 83 e~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 689888888877654 37889999987 45688889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCC-CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCc
Q 019322 181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259 (343)
Q Consensus 181 ~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP 259 (343)
.+|||+.+|+.|+| ++|.||+-|+.++++.+.+..+..++.+++++|||++++|||||++++.+|+.++..- .++|
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP 233 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRP 233 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCC
Confidence 99999999999999 8999999999999999999999999999999999999999999999999998877642 3499
Q ss_pred EEEEEEEec
Q 019322 260 ILIEALTYR 268 (343)
Q Consensus 260 ~lIe~~t~R 268 (343)
++|.|.|.+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999999865
No 17
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3e-30 Score=256.50 Aligned_cols=307 Identities=14% Similarity=0.131 Sum_probs=265.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC------CCcEEEc-cCcchHHHHH
Q 019322 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK------NDDFVVP-QYREPGVLLW 102 (343)
Q Consensus 30 ~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~------~~D~v~~-~yR~~~~~l~ 102 (343)
...+|.|+.+-+|.++.++-.||+++..++..-| +| ...|+|++..|+-..+. .+++|++ .|||+.+.|+
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK-RF--GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~ 319 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK-RF--GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLA 319 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc-cc--cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHH
Confidence 5678999999999999999999999998887544 44 45899998888766554 5789998 7999998887
Q ss_pred c--CCCHHHHHHHhhcCCCCCCCCCC-cccccCCC--C----------CCcccccccccCchHHHHHHHHhcccc-----
Q 019322 103 R--GFSMQEFANQCFGNKADYGKGRQ-MPIHYGSN--K----------HNYFTVSSTIATQLPHAVGAAYALKMD----- 162 (343)
Q Consensus 103 ~--G~~~~~~~~~~~g~~~~~~~G~~-~~~h~~~~--~----------~~~~~~~g~lG~~lp~A~G~A~a~k~~----- 162 (343)
- -.|++++|.+|.| ......|+| ..+|++.. . ..+..++++|.+.=|+.+|--.|.++.
T Consensus 320 NVvRKpl~qIfseF~g-~~~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~ 398 (1017)
T KOG0450|consen 320 NVVRKPLEQIFSEFSG-LEAADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEE 398 (1017)
T ss_pred HHHhhHHHHHHHhccC-CCCCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccc
Confidence 4 3789999999988 344444665 77887642 1 124567899999999999999998864
Q ss_pred cCCCeEEEEeCcccc-CcchHHHHHHHHHhCCC---CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCC
Q 019322 163 RKDACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~L---pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d 238 (343)
+.+...|.++||++| .||+++|++.+...-+. ..|+||.||+++++|......+.+...++|++.+.|+++|+++|
T Consensus 399 ~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD 478 (1017)
T KOG0450|consen 399 GKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADD 478 (1017)
T ss_pred cceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCC
Confidence 345678999999999 69999999988776554 58999999999999998888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHH
Q 019322 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 318 (343)
Q Consensus 239 ~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i 318 (343)
|++|.-+++-|.+++..+++.++|+++|||..||++.|.|. +..+-.+++.++++..+..+.+.|+++|.+|++++++.
T Consensus 479 ~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~ 557 (1017)
T KOG0450|consen 479 PEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEE 557 (1017)
T ss_pred hHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999999999999999999999999885 67888999988777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccc
Q 019322 319 RSSVRKQVILVSLTISKYGLLQL 341 (343)
Q Consensus 319 ~~~~~~~v~~a~~~a~~~~~~~~ 341 (343)
.+++..-+++|++.+|+|.+.+.
T Consensus 558 ~~k~~~I~eeafe~sKd~~~~~~ 580 (1017)
T KOG0450|consen 558 IKKYDNILEEAFERSKDYKPLHI 580 (1017)
T ss_pred HHHHHHHHHHHHHhhccccchhh
Confidence 99999999999999999987663
No 18
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=9.2e-30 Score=262.62 Aligned_cols=305 Identities=14% Similarity=0.129 Sum_probs=262.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC------CCcEEEc-cCcchHHHH
Q 019322 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK------NDDFVVP-QYREPGVLL 101 (343)
Q Consensus 29 ~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~------~~D~v~~-~yR~~~~~l 101 (343)
..+.++.|+++.+|+.+..+..||+++..+|.--| +| +..|.|+...++-..++ ..+++++ .|||+.+.|
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~K-RF--slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAK-RF--SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCc-cc--cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 35679999999999999999999999988885333 55 66999998877665553 5799999 799999888
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC----------CCcccccccccCchHHHHHHHHhcccccC-----
Q 019322 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK----------HNYFTVSSTIATQLPHAVGAAYALKMDRK----- 164 (343)
Q Consensus 102 ~--~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~----------~~~~~~~g~lG~~lp~A~G~A~a~k~~~~----- 164 (343)
. .|.|++.+|.||.|.......-+...+|++... .....++++|....|+..|.+.|.+....
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 5 799999999999997643322233667765321 12346789999999999999999876432
Q ss_pred CCeEEEEeCcccc-CcchHHHHHHHHHhCCC---CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHH
Q 019322 165 DACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (343)
Q Consensus 165 ~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~L---pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~ 240 (343)
....+.++||.+| +||.+.|.||+...-+- +.|+||.||+.+++|......+.+...+.|+.+++|+++|+|.||+
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPE 404 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPE 404 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCch
Confidence 3467799999999 69999999999988664 8899999999999999777888888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHHHHHHHHH
Q 019322 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (343)
Q Consensus 241 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~ 320 (343)
++..+.+.|.+++..++++++|+..|||.+||+++|+|. +..+..++..++++.+...+.+.|+++|++++++.+.+.+
T Consensus 405 Av~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~ 483 (906)
T COG0567 405 AVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVN 483 (906)
T ss_pred hhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999986 5677788888877889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcC
Q 019322 321 SVRKQVILVSLTISKYG 337 (343)
Q Consensus 321 ~~~~~v~~a~~~a~~~~ 337 (343)
++++.++..+...+.++
T Consensus 484 ~~r~~L~~~~~~~~~~~ 500 (906)
T COG0567 484 DYRDALDQGFEVVKEYK 500 (906)
T ss_pred HHHHHhhhhhhHHhHHH
Confidence 99999999999998887
No 19
>PRK12754 transketolase; Reviewed
Probab=99.96 E-value=7.7e-28 Score=249.12 Aligned_cols=181 Identities=25% Similarity=0.298 Sum_probs=149.3
Q ss_pred HHHcCC--CHHHHHHHhhcCCCCCCCCCCcccccCCC-CCCcccccccccCchHHHHHHHHhccccc----------CCC
Q 019322 100 LLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDA 166 (343)
Q Consensus 100 ~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~ 166 (343)
+...|+ +.++ +.+|+. .|+.+++|+... .+++..++|+||+|++.|+|+|+|.|+.+ .+.
T Consensus 75 l~~~G~~~~~e~-L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~ 147 (663)
T PRK12754 75 LHLTGYDLPMEE-LKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDH 147 (663)
T ss_pred HHHcCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCC
Confidence 335685 5554 556654 377788998764 57888899999999999999999999875 378
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhCCCC-EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEE-EeCCCHHHHHH
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYS 244 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~ 244 (343)
+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... .+++.+++++|||++++ |||||++++.+
T Consensus 148 ~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~ 226 (663)
T PRK12754 148 YTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKR 226 (663)
T ss_pred EEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHH
Confidence 99999999999999999999999999996 79999999999999998776 58999999999999999 89999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEEEecCCCCCCC-CCC-CCC--CCHHHHHHHH
Q 019322 245 AVHAAREMAIGEGRPILIEALTYRVGHHTTS-DDS-TKY--RPVDEIEWWR 291 (343)
Q Consensus 245 a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~-dd~-~~Y--r~~~e~~~~~ 291 (343)
|+++|.+. .++|++|+++|++..|.+.. +.+ ... -+++|+++.+
T Consensus 227 A~~~a~~~---~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~ 274 (663)
T PRK12754 227 AVEEARAV---TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTR 274 (663)
T ss_pred HHHHHHhc---CCCCEEEEEEeeeccCccccCCCccccCCCCCHHHHHHHH
Confidence 99887653 57899999999999987632 211 112 2456666554
No 20
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.96 E-value=1.4e-28 Score=236.00 Aligned_cols=195 Identities=27% Similarity=0.316 Sum_probs=145.2
Q ss_pred CcEEEccCcchH------HHHHcCC-CHHHHHHHhhcCCCCCCCCCCcccccCC-CCCCcccccccccCchHHHHHHHHh
Q 019322 87 DDFVVPQYREPG------VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (343)
Q Consensus 87 ~D~v~~~yR~~~------~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a 158 (343)
.|.++.+ .||+ .+...|+ ...+-+.+++. .|+.+++|+.. ..+++..++|+||+|+++|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4765544 4553 2334686 45555556654 37789999974 5678888999999999999999999
Q ss_pred ccccc----------CCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
.|+.+ -+.+|+|++|||+++||.+|||+.+|+.++| ++|+|+++|+.++++++.... ..++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98642 2578999999999999999999999999999 899999999999999887554 46899999999
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCC--CCCC--CHHHHHHHHh
Q 019322 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS--TKYR--PVDEIEWWRT 292 (343)
Q Consensus 228 G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~--~~Yr--~~~e~~~~~~ 292 (343)
||.+++| ||||++++.+|+++|... .++|++|.|+|....|-+...+. ..+. +++|+++.++
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~~---~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~ 272 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKAS---KGKPTVIIARTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKK 272 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHHS---TSS-EEEEEEE-TTTTSTTTTTSGGGTSS--HHHHHHHHHH
T ss_pred hhhhcccccCcHHHHHHHHHHHHHhc---CCCCceeecceEEecCchhhcccchhhccCCcHHHHHHHHH
Confidence 9999998 999999999999988752 47999999999998887543221 1222 3466776653
No 21
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.96 E-value=1.6e-27 Score=247.74 Aligned_cols=164 Identities=23% Similarity=0.265 Sum_probs=140.3
Q ss_pred HHHcCCC-HHHHHHHhhcCCCCCCCCCCcccccCC-CCCCcccccccccCchHHHHHHHHhccccc----------CCCe
Q 019322 100 LLWRGFS-MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDAC 167 (343)
Q Consensus 100 ~l~~G~~-~~~~~~~~~g~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~ 167 (343)
+...|+. ..+-+.+|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|.|+.+ .+.+
T Consensus 71 l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~ 144 (653)
T TIGR00232 71 LHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHY 144 (653)
T ss_pred HHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCE
Confidence 3457863 4444556654 37778999876 357788889999999999999999999763 3778
Q ss_pred EEEEeCccccCcchHHHHHHHHHhCCCC-EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEE-eCCCHHHHHHH
Q 019322 168 AVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSA 245 (343)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a 245 (343)
|+|++|||+++||.+|||+++|+.++|| +|+||+||+|++++++.... .+++.+++++|||+++.| ||||+.++.+|
T Consensus 145 v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A 223 (653)
T TIGR00232 145 TYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAA 223 (653)
T ss_pred EEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 9999999999999999999999999996 88999999999999998876 578999999999999999 99999999988
Q ss_pred HHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 246 VHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 246 ~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
+++|.+. .++|++|+|+|+|..|.+
T Consensus 224 ~~~a~~~---~~~P~~I~~~T~~g~G~~ 248 (653)
T TIGR00232 224 IEEAKAS---KDKPTLIEVTTTIGFGSP 248 (653)
T ss_pred HHHHHhC---CCCCEEEEEEeeecccCc
Confidence 8876541 248999999999999875
No 22
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.96 E-value=1.2e-27 Score=222.84 Aligned_cols=180 Identities=27% Similarity=0.301 Sum_probs=150.8
Q ss_pred CcE-EEc-cCcchH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CCcccccccccCchHHHHHHHHhcc
Q 019322 87 DDF-VVP-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALK 160 (343)
Q Consensus 87 ~D~-v~~-~yR~~~---~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k 160 (343)
.|. +++ .|...+ .+...|+..++-+..+.. .|+.++.|+.... +++...+|++|+++|.|+|+|+|.+
T Consensus 49 rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~ 122 (255)
T cd02012 49 RDRFVLSKGHASPALYAVLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEK 122 (255)
T ss_pred CCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHH
Confidence 364 443 344444 444678665565666654 3667888987644 3677788999999999999999999
Q ss_pred cccCCCeEEEEeCccccCcchHHHHHHHHHhCCCC-EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCH
Q 019322 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (343)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 239 (343)
+.+++++|+|++|||++++|.+||++++|+.++|| +++|++||+|+++.+........++.+++++|||+++.|||||+
T Consensus 123 ~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 123 LLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred HhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH
Confidence 99999999999999999999999999999999995 89999999999998876666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
+++.+++++|.+. .++|++|+++|.|..|++..
T Consensus 203 ~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 203 EEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred HHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence 9999999988753 27899999999999999843
No 23
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.6e-28 Score=238.09 Aligned_cols=304 Identities=16% Similarity=0.137 Sum_probs=247.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcC------CCCcEEEc-cCcchHHHHH--
Q 019322 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVP-QYREPGVLLW-- 102 (343)
Q Consensus 32 ~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l------~~~D~v~~-~yR~~~~~l~-- 102 (343)
.+.++++.++-+.|+.+..||.++..+|.+-+ ++ ...|.|++..-....| +..|++++ .|||+..++.
T Consensus 153 ~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK-RY--GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~L 229 (913)
T KOG0451|consen 153 QLGKEERCEIAELMLKSQAFDNFLATKFPTVK-RY--GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTAL 229 (913)
T ss_pred HhhHHHHHHHHHHHHhhhhHHHHHHhccchhh-hh--ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHHH
Confidence 57889999999999999999999998886533 21 4577777653322223 25789888 7999998885
Q ss_pred cCCCHHHHHHHhhcCCCCCCC---CCCcccccCCC--------C--CCcccccccccCchHHHHHHHHhcccc-------
Q 019322 103 RGFSMQEFANQCFGNKADYGK---GRQMPIHYGSN--------K--HNYFTVSSTIATQLPHAVGAAYALKMD------- 162 (343)
Q Consensus 103 ~G~~~~~~~~~~~g~~~~~~~---G~~~~~h~~~~--------~--~~~~~~~g~lG~~lp~A~G~A~a~k~~------- 162 (343)
..+||..+|..+.|.+..+.. -+..-+|+.+. + ....+++++|.+.-|+|+|.+.+.+..
T Consensus 230 l~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdys 309 (913)
T KOG0451|consen 230 LNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYS 309 (913)
T ss_pred hcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCC
Confidence 689999999999998775432 12233454321 1 124577899999999999999887542
Q ss_pred -------cCCCeEEEEeCcccc-CcchHHHHHHHHHhC--CC-CEEEEEEcCCCccccccccccCCccHHHhHhhcCceE
Q 019322 163 -------RKDACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (343)
Q Consensus 163 -------~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~--~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~ 231 (343)
+.....|.+.|||+| .||.++|+++++-.- .+ ..|++|.||+.+++++.+...+.....++++++++|+
T Consensus 310 pd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pv 389 (913)
T KOG0451|consen 310 PDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPV 389 (913)
T ss_pred CCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCE
Confidence 122367788999999 799999999998754 45 5799999999999999998888888899999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHH-HHHHHHHHcCCC
Q 019322 232 IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT-RFRKWIESNGWW 310 (343)
Q Consensus 232 ~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~-~~~~~L~~~g~~ 310 (343)
++|+|+||++|.+|.+-|+++.|+.++.++|+..|||..||++-|||. |.++-.++..+ +|..++ .|.+.|+++|++
T Consensus 390 iHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~v~-aReSvPdlya~~L~~eg~~ 467 (913)
T KOG0451|consen 390 IHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKEVE-ARESVPDLYAQQLAKEGVL 467 (913)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHHHH-hhhcccHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999984 88887666665 466666 478999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 019322 311 NGDIESELRSSVRKQVILVSLTISKYGLLQ 340 (343)
Q Consensus 311 ~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~ 340 (343)
|++++++++++..+++.+-...+..|.+-.
T Consensus 468 tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 468 TEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 999999999999999999998888776643
No 24
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=3.5e-27 Score=245.50 Aligned_cols=217 Identities=21% Similarity=0.173 Sum_probs=169.0
Q ss_pred cccccchhhHHHHHHHh-cCC--C-------CcEEE-c-cCcc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCccc
Q 019322 66 FYLTTSGEEAINIASAA-AIK--N-------DDFVV-P-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPI 129 (343)
Q Consensus 66 ~~~~~~G~Ea~~v~~~~-~l~--~-------~D~v~-~-~yR~---~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~ 129 (343)
+..++.|.--+.+++-. .|+ + .|.++ + .|.. .+++...|+ ...+-+.+++.. |+.++.
T Consensus 28 H~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~~------~s~~~g 101 (661)
T PTZ00089 28 HPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQL------GSRTPG 101 (661)
T ss_pred CcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCCC------CCCCCC
Confidence 33345554444444443 443 3 47644 3 4665 355666785 444556666652 556678
Q ss_pred ccCCC-CCCcccccccccCchHHHHHHHHhcccccC----------CCeEEEEeCccccCcchHHHHHHHHHhCCCC-EE
Q 019322 130 HYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VI 197 (343)
Q Consensus 130 h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi 197 (343)
|+... .+++..++|++|++++.|+|+|+|.|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|
T Consensus 102 hp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi 181 (661)
T PTZ00089 102 HPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLI 181 (661)
T ss_pred CCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEE
Confidence 88653 467778899999999999999999998653 7899999999999999999999999999995 89
Q ss_pred EEEEcCCCccccccccccCCccHHHhHhhcCceEEEE-eCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 198 FICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 198 ~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V-dG~-d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
+||+||++++++++... ...++.+++++|||+++.| ||| |+.++++|+++|++. .++|++|+++|+|..||...
T Consensus 182 ~i~d~N~~~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e 257 (661)
T PTZ00089 182 VLYDDNKITIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKA 257 (661)
T ss_pred EEEECCCcccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcC
Confidence 99999999999998765 3578999999999999999 999 999999999988764 36899999999999998665
Q ss_pred CCCC---CCCCHHHHHHHHh
Q 019322 276 DDST---KYRPVDEIEWWRT 292 (343)
Q Consensus 276 dd~~---~Yr~~~e~~~~~~ 292 (343)
+... .+.+++|++++++
T Consensus 258 ~~~~~H~~~~~~~~~~~~~~ 277 (661)
T PTZ00089 258 GTEKVHGAPLGDEDIAQVKE 277 (661)
T ss_pred CCCCccCCCCCHHHHHHHHH
Confidence 5332 3567788887763
No 25
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.96 E-value=7.2e-27 Score=225.29 Aligned_cols=228 Identities=17% Similarity=0.126 Sum_probs=170.1
Q ss_pred ccchhhHHHHHH-HhcCCC------CcEEEc-cCcc---hHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CcccccCCC-
Q 019322 69 TTSGEEAINIAS-AAAIKN------DDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN- 134 (343)
Q Consensus 69 ~~~G~Ea~~v~~-~~~l~~------~D~v~~-~yR~---~~~~l~~G~~~~~~~~~~~g~~~~~~~G~--~~~~h~~~~- 134 (343)
++.+.--+.+.+ ...|+. .|.|++ .|-. .+++...|+.+.+-+..|+.. |+ +++.|+...
T Consensus 35 ~slS~adI~~aLy~~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~ 108 (386)
T cd02017 35 TFASAATLYEVGFNHFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWL 108 (386)
T ss_pred cchhHHHHHHHHHHHhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCC
Confidence 344433333333 345664 687554 3444 244556786555557777653 44 577776543
Q ss_pred CCC-cccccccccCchHHHHHHHHhccc-------ccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCC
Q 019322 135 KHN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGW 205 (343)
Q Consensus 135 ~~~-~~~~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~ 205 (343)
.++ +..++|++|+|+++|+|+|+|.|+ .+.+.+|+|++|||+++||.+||++++|+.++| ++|+|+++|++
T Consensus 109 ~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~ 188 (386)
T cd02017 109 MPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQ 188 (386)
T ss_pred CCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 243 778899999999999999999997 456789999999999999999999999999999 89999999999
Q ss_pred ccccccccc-cCCccHHHhHhhcCceEEEEe-------------------------------------------------
Q 019322 206 AISTPISDQ-FRSDGAVVKGRAYGVRSIRVD------------------------------------------------- 235 (343)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~~a~a~G~~~~~Vd------------------------------------------------- 235 (343)
+++.++... ...+++.+++++|||.++.||
T Consensus 189 qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~ 268 (386)
T cd02017 189 RLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYP 268 (386)
T ss_pred ccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccH
Confidence 999998875 356899999999999999998
Q ss_pred --------------------CCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCC--CCCCC----CCCCHHHHHH
Q 019322 236 --------------------GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT--SDDST----KYRPVDEIEW 289 (343)
Q Consensus 236 --------------------G~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~--~dd~~----~Yr~~~e~~~ 289 (343)
|||+.+|.+|+.++.+. .++|++|.++|.+.+|-+. ..+.. .-.+++|+++
T Consensus 269 ~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~ 345 (386)
T cd02017 269 ELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKA 345 (386)
T ss_pred HHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHH
Confidence 99999999999988753 4689999999999888762 22222 2235677776
Q ss_pred HHhCCCcHHHHHHHHHH
Q 019322 290 WRTTQDPVTRFRKWIES 306 (343)
Q Consensus 290 ~~~~~dPi~~~~~~L~~ 306 (343)
.++..+ ++++...+.+
T Consensus 346 ~~~~lg-~~~~~~~~~~ 361 (386)
T cd02017 346 LRDRFG-IPVSDEQLEE 361 (386)
T ss_pred HHHHcC-CCCCHHHhcc
Confidence 653332 5555555443
No 26
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.95 E-value=1.8e-27 Score=213.01 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=137.0
Q ss_pred CCcEEEc--cCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CCcccccccccCchHHHHHHHHhcccc
Q 019322 86 NDDFVVP--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 162 (343)
Q Consensus 86 ~~D~v~~--~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~ 162 (343)
+.|.++. .|...+.+...|. ++-|.++.. .|+ +++|+...+ +++..++|++|+++|+|+|+|+|.|+.
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 4575544 3444455555665 344556654 244 888876543 566678999999999999999999999
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEE-EeCCCHHH
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 241 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~ 241 (343)
+++++|+|++|||+++||++||++++|+.+++|+|+||+||+|++++++. +..++++++||.+.. |||+|+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 98999999999999999999999999999988999999999999988765 477889999999986 99999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEEecCCC
Q 019322 242 IYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (343)
Q Consensus 242 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 271 (343)
+.+++++|.+ .++|++|+++|++..|
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9999887754 5799999999988654
No 27
>PRK12753 transketolase; Reviewed
Probab=99.95 E-value=3.2e-27 Score=245.58 Aligned_cols=178 Identities=22% Similarity=0.219 Sum_probs=148.6
Q ss_pred CcEEE-c-cCcc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCcccccCC-CCCCcccccccccCchHHHHHHHHhc
Q 019322 87 DDFVV-P-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (343)
Q Consensus 87 ~D~v~-~-~yR~---~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~ 159 (343)
.|.++ + .|.. .+++...|+ ...+-|.+|+. .|+.+++|+.. ..+++..++|++|++++.|+|+|+|.
T Consensus 57 rDrfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~ 130 (663)
T PRK12753 57 RDRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAE 130 (663)
T ss_pred CCcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHH
Confidence 36544 3 4554 234556785 34455666665 36678889876 35788889999999999999999999
Q ss_pred ccccC----------CCeEEEEeCccccCcchHHHHHHHHHhCCCC-EEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
|+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++...+ ..++.+++++||
T Consensus 131 k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~G 209 (663)
T PRK12753 131 RTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYH 209 (663)
T ss_pred HHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcC
Confidence 98652 6899999999999999999999999999995 89999999999999988765 578999999999
Q ss_pred ceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCC
Q 019322 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (343)
Q Consensus 229 ~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 274 (343)
|+++. |||||+.++++|+++|.+. .++|++|+++|++..|++.
T Consensus 210 w~~~~~vDGhD~~~i~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~ 253 (663)
T PRK12753 210 WHVIHEIDGHDPQAIKEAILEAQSV---KDKPSLIICRTIIGFGSPN 253 (663)
T ss_pred CeEEceeCCCCHHHHHHHHHHHHHC---CCCeEEEEEEEeecCCCCc
Confidence 99995 9999999999999988763 5789999999999999874
No 28
>PRK05899 transketolase; Reviewed
Probab=99.95 E-value=3.2e-26 Score=237.77 Aligned_cols=194 Identities=25% Similarity=0.254 Sum_probs=156.4
Q ss_pred CcEEEc--cCcc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCcccccCCC-CCCcccccccccCchHHHHHHHHhc
Q 019322 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (343)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~ 159 (343)
.|.++. .|-. .+++...|+ ..++-+..+.. .|+.++.|+... .+++...+|++|+++|.|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 476544 3444 244666887 55555666654 244567787753 3567778999999999999999999
Q ss_pred ccccC----------CCeEEEEeCccccCcchHHHHHHHHHhCCCC-EEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
++.+. +++|+|++|||++++|.+||+|++|+.++|| +|+|++||+|+++++... ....++.+++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~-~~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEG-WFTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccc-cccccHHHHhccCC
Confidence 87766 7899999999999999999999999999996 899999999999987764 34578999999999
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCC----HHHHHHHH
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP----VDEIEWWR 291 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~----~~e~~~~~ 291 (343)
|+++.|||||+.++.+++++|.+ .++|++|+++|+|..||+..++...|.. +++++++.
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~ 276 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAK 276 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHH
Confidence 99999999999999999998875 3689999999999999986655544543 46666654
No 29
>PLN02790 transketolase
Probab=99.94 E-value=4.6e-26 Score=236.89 Aligned_cols=178 Identities=21% Similarity=0.203 Sum_probs=147.3
Q ss_pred CcEEEc--cCcc---hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCcccccCC-CCCCcccccccccCchHHHHHHHHh
Q 019322 87 DDFVVP--QYRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (343)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a 158 (343)
.|.++. .|.. .+++...|+ -..+-|..|+. .|+..++|+.. ..+++..++|++|++++.|+|+|+|
T Consensus 47 rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A 120 (654)
T PLN02790 47 RDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120 (654)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHH
Confidence 576554 4555 355666786 23444666664 36667789875 3578888999999999999999999
Q ss_pred ccc-----ccC-----CCeEEEEeCccccCcchHHHHHHHHHhCCCC-EEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 159 LKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 159 ~k~-----~~~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
.|+ .++ +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+|++++++.... ..++.+++++|
T Consensus 121 ~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 199 (654)
T PLN02790 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEAL 199 (654)
T ss_pred HHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHc
Confidence 995 332 6899999999999999999999999999996 89999999999999987543 56889999999
Q ss_pred CceEEEEeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCC
Q 019322 228 GVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (343)
Q Consensus 228 G~~~~~VdG--~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 274 (343)
||+++.||| ||++++.+|+++|.+. .++|++|+++|++..|.+.
T Consensus 200 G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 200 GWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCcc
Confidence 999999988 8999999999887753 5799999999999988763
No 30
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.94 E-value=5.2e-26 Score=234.27 Aligned_cols=228 Identities=17% Similarity=0.181 Sum_probs=168.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHHH
Q 019322 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (343)
Q Consensus 26 ~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (343)
.|.+..+++.+++.++-.. +|..=-.+... ..|.++ ++.|.--+.+.+-..++ +.|.++. .|...+++..
T Consensus 12 ~~~~~~~~~~~~l~~~a~~---iR~~~~~~~~~-~~gH~g---~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~~~~~ 84 (580)
T PRK05444 12 SPADLKKLSEEELPQLADE---IREFLIDVVSK-TGGHLG---SNLGVVELTVALHYVFDTPKDRIIWDVGHQAYPHKIL 84 (580)
T ss_pred CHHHHhcCCHHHHHHHHHH---HHHHHHHHHHh-cCCCcC---CCccHHHHHHHHHHhcCCCCccEEEeccHHHHHHHHH
Confidence 3455677887776655333 34433333322 344443 34444333444444554 4575544 4555555666
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CCcccccccccCchHHHHHHHHhcccc-cCCCeEEEEeCccccCcc
Q 019322 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD-RKDACAVTYFGDGGTSEG 180 (343)
Q Consensus 103 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~-~~~~~vv~~~GDG~~~eG 180 (343)
.|. .+.+..++. .|+ +++|+.... +++..++|++|+++|+|+|+|+|.|+. +++++|+|++|||+++||
T Consensus 85 ~g~--~~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG 155 (580)
T PRK05444 85 TGR--RDRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGG 155 (580)
T ss_pred hCc--HHHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccC
Confidence 775 233445543 244 678887643 677888999999999999999999988 588999999999999999
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcCCCccccccccc---cCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhcc
Q 019322 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGE 256 (343)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~ 256 (343)
++||++++|+.+++|+|+|++||+|++++++... ....++.+++++|||+++ .|||+|+++++++++++.+ .
T Consensus 156 ~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~ 231 (580)
T PRK05444 156 MAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKD----L 231 (580)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh----C
Confidence 9999999999999999999999999998877543 233567789999999999 5899999999999987764 4
Q ss_pred CCcEEEEEEEecCCCCC
Q 019322 257 GRPILIEALTYRVGHHT 273 (343)
Q Consensus 257 ~gP~lIe~~t~R~~gHs 273 (343)
++|++|+++|.|..|.+
T Consensus 232 ~~P~lI~~~T~kg~G~~ 248 (580)
T PRK05444 232 KGPVLLHVVTKKGKGYA 248 (580)
T ss_pred CCCEEEEEEecCCcCCC
Confidence 79999999999988865
No 31
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.94 E-value=1.2e-25 Score=232.39 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=169.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHHHc
Q 019322 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (343)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (343)
|.+..+++.+++.++-.. ++.+.++. .. ... ++..++.|.--+.+++...++ +.|.++. .|...++++..
T Consensus 7 p~dl~~l~~~~l~~la~~-iR~~~i~~--~~-~~~---GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~ 79 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE-LRRYLLES--VS-ASG---GHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLT 79 (617)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHH--Hh-ccC---CCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence 444567777776655443 23333332 21 122 344566666556666766777 5685543 56667777788
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcc-cccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchH
Q 019322 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (343)
Q Consensus 104 G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~ 182 (343)
|. .+.|.+++. .|+ +++|+....+++. .++|++|+++++|+|+|+|.|+++.+.+++|++|||++++|.+
T Consensus 80 G~--~~~l~~~r~------~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~ 150 (617)
T TIGR00204 80 GR--REKFSTLRQ------KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA 150 (617)
T ss_pred Cc--HHHhcchhh------cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence 97 344666654 244 8888876555555 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCCcccccccccc-----------------------C-C---cc-HHHh-----------
Q 019322 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQF-----------------------R-S---DG-AVVK----------- 223 (343)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~-----------------------~-~---~~-~~~~----------- 223 (343)
|||+|+|+.++||+|+||+||++++++++.... . . .+ +.++
T Consensus 151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 230 (617)
T TIGR00204 151 FEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP 230 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc
Confidence 999999999999999999999999998775221 0 0 01 3333
Q ss_pred ---HhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 224 ---GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 224 ---a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
+++|||.++ .|||||+.++.++++.+.+ .++|++|+++|.|..|-+
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~ 280 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYK 280 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCc
Confidence 899999999 8999999999999986654 478999999999987743
No 32
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.93 E-value=3.5e-24 Score=222.68 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=153.6
Q ss_pred HHHHHhcCCC------CcEEEccCcchH------HHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CC-ccccc
Q 019322 77 NIASAAAIKN------DDFVVPQYREPG------VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVS 142 (343)
Q Consensus 77 ~v~~~~~l~~------~D~v~~~yR~~~------~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~-~~~~~ 142 (343)
.+.....|+. .|+|++ .||+ .+...|+..++-+..|+... .|+++++|+.... ++ +..++
T Consensus 115 ~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sT 188 (885)
T TIGR00759 115 EVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPT 188 (885)
T ss_pred HHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCC
Confidence 3444445653 687665 4553 23457976677777776421 2567788876533 44 66789
Q ss_pred ccccCchHHHHHHHHhccc-------ccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCccccccccc
Q 019322 143 STIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ 214 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~ 214 (343)
|+||+|++.|+|+|++.|+ ...+.+|+|++|||+++||.+|||+.+|++++| ++|+||++|..++++++...
T Consensus 189 GSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~ 268 (885)
T TIGR00759 189 VSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGN 268 (885)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccc
Confidence 9999999999999999996 567789999999999999999999999999999 89999999999999999875
Q ss_pred cC-CccHHHhHhhcCceEEEE-----------------------------------------------------------
Q 019322 215 FR-SDGAVVKGRAYGVRSIRV----------------------------------------------------------- 234 (343)
Q Consensus 215 ~~-~~~~~~~a~a~G~~~~~V----------------------------------------------------------- 234 (343)
.. ..++.++++++||.+++|
T Consensus 269 ~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~ 348 (885)
T TIGR00759 269 GKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADM 348 (885)
T ss_pred cccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcc
Confidence 44 568999999999999999
Q ss_pred ----------eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 235 ----------DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 235 ----------dG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
+|||+.+|++|+++|.+. .++|++|.++|.+.+|.+
T Consensus 349 sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 349 SDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred chhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence 599999999999988864 458999999999998865
No 33
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.93 E-value=8e-24 Score=222.27 Aligned_cols=249 Identities=17% Similarity=0.190 Sum_probs=171.9
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchh-hHHHHHHHhcCCC---
Q 019322 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGE-EAINIASAAAIKN--- 86 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~G~-Ea~~v~~~~~l~~--- 86 (343)
+|++..+..+..... ..+.++.+-....++...++.........+++ ++..++.+. +...+.....|+.
T Consensus 54 t~y~nti~~~~~~~~------pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~ 127 (889)
T TIGR03186 54 TPYVNTIAVDQEPPY------PGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGD 127 (889)
T ss_pred CCCccCCCCcCCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCC
Confidence 555555554433322 22334444444444444443332222111223 222222222 3333444455653
Q ss_pred ---CcEEEc-cCcchHH---HHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCC-CCC-cccccccccCchHHHHHHHH
Q 019322 87 ---DDFVVP-QYREPGV---LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHN-YFTVSSTIATQLPHAVGAAY 157 (343)
Q Consensus 87 ---~D~v~~-~yR~~~~---~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~-~~~-~~~~~g~lG~~lp~A~G~A~ 157 (343)
+|+|++ -|-+.+. +...|+..++-+.+|+... .|+++++|+... .++ +..++|+||+|++.|+|+|+
T Consensus 128 ~~~rD~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Al 203 (889)
T TIGR03186 128 ASGGDLVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQAR 203 (889)
T ss_pred CCCCCEEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHH
Confidence 587665 3444332 3357866666677776531 245566654432 344 56789999999999999999
Q ss_pred hccccc-------CCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCccccccccccC-CccHHHhHhhcC
Q 019322 158 ALKMDR-------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYG 228 (343)
Q Consensus 158 a~k~~~-------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G 228 (343)
+.|+.. .+.+|+|++|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.+++++||
T Consensus 204 a~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~G 283 (889)
T TIGR03186 204 FMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAG 283 (889)
T ss_pred HHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCC
Confidence 988432 3689999999999999999999999999999 8999999999999999887443 578999999999
Q ss_pred ceEEEE---------------------------------------------------------------------eCCCH
Q 019322 229 VRSIRV---------------------------------------------------------------------DGNDA 239 (343)
Q Consensus 229 ~~~~~V---------------------------------------------------------------------dG~d~ 239 (343)
|.+++| +|||+
T Consensus 284 W~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~ 363 (889)
T TIGR03186 284 WNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDA 363 (889)
T ss_pred CEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCH
Confidence 999999 59999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
.+|++|+++|++. .++|++|.++|...+|-+
T Consensus 364 ~~i~~A~~~A~~~---~~~PTvIla~TvkG~G~~ 394 (889)
T TIGR03186 364 RKLYAAYDRAVRH---EGRPTVILAKTMKGFGMG 394 (889)
T ss_pred HHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 9999999999864 468999999999988753
No 34
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.92 E-value=8.5e-25 Score=197.97 Aligned_cols=167 Identities=22% Similarity=0.307 Sum_probs=142.6
Q ss_pred chhhHHHHHHHhcCCC-CcEEEccCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCch
Q 019322 71 SGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (343)
Q Consensus 71 ~G~Ea~~v~~~~~l~~-~D~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l 149 (343)
.||++.++.+...|.. .|.+++.|+.+.. | ++++|.+|.- .|+ +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qfs~------~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQFSF------PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhcCC------CCC-CCCCCcccCCCeeecccchhhHH
Confidence 6899999888888876 5899999997752 2 2556777621 233 89999887889999999999999
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchH---HHHHHHHHhCCC-CEEEEEEcCCCccccccccc-cCCccHHHhH
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKG 224 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a 224 (343)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ +|+.|++||+|++++++... .+.+++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999985 568899999999999999997 888889999999 79999999999999999855 5578899999
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 019322 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (343)
Q Consensus 225 ~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r 254 (343)
++|||+++.|||+|++++++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876443
No 35
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.92 E-value=3.9e-24 Score=221.95 Aligned_cols=238 Identities=18% Similarity=0.191 Sum_probs=168.9
Q ss_pred eeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc
Q 019322 14 CYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP 92 (343)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~ 92 (343)
.+++|+ ++-.|.+..+++.+++.++-.. ++.+.++.. ... .| +..++.|.--+.+++...++ |.|.++.
T Consensus 5 ~~~~l~---~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~--~~~-~G---H~g~~ls~vel~~aL~~~~~~prDr~i~ 74 (641)
T PRK12571 5 KTPLLD---RIKGPADLRALSDAELEQLADE-LRAEVISAV--SET-GG---HLGSSLGVVELTVALHAVFNTPKDKLVW 74 (641)
T ss_pred CCChhh---hcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHH--HHh-CC---CcCCCchHHHHHHHHHHhcCCCCCcEEE
Confidence 344554 3344556778887777666443 233333322 211 23 44456665555566655665 6685553
Q ss_pred --cCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCC-CcccccccccCchHHHHHHHHhcccccCCCeEE
Q 019322 93 --QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (343)
Q Consensus 93 --~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv 169 (343)
.|-..++++..|. .+.|..++.. |+ ++.|+...+. ......|+-+.++++|+|+|+|.++.+++++|+
T Consensus 75 s~GH~~Y~~~~l~g~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~ 145 (641)
T PRK12571 75 DVGHQCYPHKILTGR--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVV 145 (641)
T ss_pred ECchHHHHHHHHhCC--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEE
Confidence 5666677777786 4556666642 43 6667654332 222234555677899999999999999999999
Q ss_pred EEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccc-------cccCCccH----------------------
Q 019322 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA---------------------- 220 (343)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~-------~~~~~~~~---------------------- 220 (343)
|++|||++++|++||++++|+.+++|+|+|++||++++++++. +......+
T Consensus 146 ~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (641)
T PRK12571 146 AVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGA 225 (641)
T ss_pred EEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHH
Confidence 9999999999999999999999999999999999999998874 21112111
Q ss_pred -------------HHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 221 -------------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 221 -------------~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
.+++++|||.++ .|||||+.++.++++++.+. .++|++|+++|.+..|-+
T Consensus 226 ~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~ 289 (641)
T PRK12571 226 RRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYA 289 (641)
T ss_pred HHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcc
Confidence 478999999999 79999999999999887752 378999999999988755
No 36
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=6.3e-24 Score=218.24 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=153.4
Q ss_pred ccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CCccc
Q 019322 65 SFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT 140 (343)
Q Consensus 65 ~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~ 140 (343)
++..++.|.--+.+++...|+ |.|.++. .|-..++.+..|.. +-|..++. .|+ +++|+...+ ++...
T Consensus 104 GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~------~gg-l~G~p~~~es~~d~~ 174 (641)
T PLN02234 104 GHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR--GKMKTIRQ------TNG-LSGYTKRRESEHDSF 174 (641)
T ss_pred CCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh--hhhccccc------CCC-cCCCCCCCCCCCcEE
Confidence 344566776666667766666 7786665 45555666666652 23444443 243 777876543 56778
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCc------cccccccc
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQ 214 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~------~~~~~~~~ 214 (343)
.+|++|+++++|+|+|+|.++++.+..|||++|||++++|++|||++.|+..+-|+|+|+++|+.+ .++++...
T Consensus 175 ~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v 254 (641)
T PLN02234 175 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPV 254 (641)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCc
Confidence 899999999999999999999999999999999999999999999999997777999999999984 33333322
Q ss_pred cCC---------------ccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 215 FRS---------------DGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 215 ~~~---------------~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
... .++.+++++|||.++ .|||||++++.++++++... ..++|++|.++|.+..|-+..
T Consensus 255 ~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~ 329 (641)
T PLN02234 255 GALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYA 329 (641)
T ss_pred ccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchh
Confidence 111 256789999999999 99999999999999887542 225899999999998876644
No 37
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.7e-23 Score=207.13 Aligned_cols=159 Identities=25% Similarity=0.276 Sum_probs=137.5
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCcccccCCC-CCCcccccccccCchHHHHHHHHhccccc-----C-----CCeEEEEeC
Q 019322 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR-----K-----DACAVTYFG 173 (343)
Q Consensus 105 ~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k~~~-----~-----~~~vv~~~G 173 (343)
+++++ +.+|+.. |+-.|.||... .+++..++|+||+|++.|||+|+|.|+.. + |..++|++|
T Consensus 84 ls~ed-Lk~FRQ~------~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~G 156 (663)
T COG0021 84 LSLED-LKNFRQL------GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVG 156 (663)
T ss_pred CCHHH-HHhhccC------CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEec
Confidence 45555 4456653 78889999854 57788899999999999999999998642 1 458999999
Q ss_pred ccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHH
Q 019322 174 DGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAARE 251 (343)
Q Consensus 174 DG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~ 251 (343)
||+++||+.+|+..+|+.++| ++|++.++|.++|++.+...+ .+|..+|+++|||.++ .+||||++++.+|+++|+.
T Consensus 157 DGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~ 235 (663)
T COG0021 157 DGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA 235 (663)
T ss_pred CchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999 899999999999999988776 6889999999999999 7899999999999999987
Q ss_pred HhhccCCcEEEEEEEecCCCCCC
Q 019322 252 MAIGEGRPILIEALTYRVGHHTT 274 (343)
Q Consensus 252 ~~r~~~gP~lIe~~t~R~~gHs~ 274 (343)
. .++|++|+|+|.=.+|-..
T Consensus 236 ~---~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 236 S---TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred c---CCCCeEEEEEeeeecCCCC
Confidence 4 6799999999977665433
No 38
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.91 E-value=1.5e-22 Score=213.52 Aligned_cols=189 Identities=20% Similarity=0.195 Sum_probs=152.8
Q ss_pred HHHHHHhcCC------CCcEEEccCcchHH------HHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CC-cccc
Q 019322 76 INIASAAAIK------NDDFVVPQYREPGV------LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTV 141 (343)
Q Consensus 76 ~~v~~~~~l~------~~D~v~~~yR~~~~------~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~-~~~~ 141 (343)
..+.....|+ ..|+|++ .+|+. +...|...++-+..|+... .|.++++|+.... ++ +..+
T Consensus 128 ~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~ 201 (896)
T PRK13012 128 FEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFP 201 (896)
T ss_pred HHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecC
Confidence 3344445565 4687655 45532 3357866666677776431 1567888877544 44 5578
Q ss_pred cccccCchHHHHHHHHhccc-------ccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCcccccccc
Q 019322 142 SSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD 213 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~ 213 (343)
+|+||.|++.|+|+|++.|+ ...+++|+||+|||+++||.+|||+.+|++++| ++|+||++|..++++++..
T Consensus 202 TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~ 281 (896)
T PRK13012 202 TGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRG 281 (896)
T ss_pred CCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCcccc
Confidence 99999999999999999994 456789999999999999999999999999999 8999999999999999887
Q ss_pred ccC-CccHHHhHhhcCceEEEE--------------------------e-------------------------------
Q 019322 214 QFR-SDGAVVKGRAYGVRSIRV--------------------------D------------------------------- 235 (343)
Q Consensus 214 ~~~-~~~~~~~a~a~G~~~~~V--------------------------d------------------------------- 235 (343)
... ..++.++++++||.+++| |
T Consensus 282 ~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~ 361 (896)
T PRK13012 282 NGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAH 361 (896)
T ss_pred ccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhc
Confidence 544 478999999999999999 8
Q ss_pred ------------CCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 236 ------------GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 236 ------------G~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
|||+.+|++|+++|.+. .++|++|.++|.+.+|-+
T Consensus 362 ~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 362 LSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred ccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 99999999999988764 468999999999988854
No 39
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.91 E-value=4.6e-23 Score=213.44 Aligned_cols=230 Identities=14% Similarity=0.144 Sum_probs=163.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHHHc
Q 019322 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (343)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (343)
|.+...++.+++.++-.. +|..=-.+.. +.| ++..++.|.--+.+++...|+ |.|.++. .|-..++++..
T Consensus 40 p~dlk~l~~~~l~~la~~---iR~~ii~~~~--~~~--GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADE---LRSDVIFNVS--KTG--GHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHHHHHHHH--hcC--CCcCccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 344556777776655444 3433222222 222 344466666556666666665 7787665 56666777777
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchH
Q 019322 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (343)
Q Consensus 104 G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~ 182 (343)
|. .+-|..++. .|+ ++.|+.... ++....+|++|+++++|+|+|+|.++++.+.+|||++|||++++|++
T Consensus 113 gr--~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR--RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc--HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 86 233555543 244 888876543 56667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCC-cc--------ccccccc-------cCC---------------------ccHH----
Q 019322 183 HAALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS---------------------DGAV---- 221 (343)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~nN~~-~~--------~~~~~~~-------~~~---------------------~~~~---- 221 (343)
|||+|.|+.+++|+|+||+||+. ++ +.++... ... .++.
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVD 263 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999999999997 33 1111100 000 0111
Q ss_pred ------------HhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCC
Q 019322 222 ------------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (343)
Q Consensus 222 ------------~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 274 (343)
.++++|||.++ .|||||+.++.++++++.+. ..++|++|+++|.+..|-..
T Consensus 264 ~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ 327 (677)
T PLN02582 264 EYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPY 327 (677)
T ss_pred HHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCCh
Confidence 24899999966 89999999999999988753 11599999999988876543
No 40
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.90 E-value=6e-22 Score=208.25 Aligned_cols=246 Identities=16% Similarity=0.165 Sum_probs=177.0
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccch-hhHHHHHHHhcCCC---
Q 019322 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSG-EEAINIASAAAIKN--- 86 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~-~~~~~~G-~Ea~~v~~~~~l~~--- 86 (343)
+|++..+..+.++ ....+.++.+.....++...++..........+++ +..++.+ -+...+.....|+.
T Consensus 60 t~y~nti~~~~~~------~~pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~ 133 (891)
T PRK09405 60 TPYINTIPVEEEP------EYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNE 133 (891)
T ss_pred CCCccCCChhhcC------CCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCC
Confidence 4555555444222 22335566666666666665554433322111222 2222222 13333445555663
Q ss_pred ---CcEEEccCcchHH------HHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CC-cccccccccCchHHHHHH
Q 019322 87 ---DDFVVPQYREPGV------LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGA 155 (343)
Q Consensus 87 ---~D~v~~~yR~~~~------~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~-~~~~~g~lG~~lp~A~G~ 155 (343)
+|+|++ .+|+. +...|...++-|..|+.. ..|+++++|+.... ++ ...++++||.|++.|+|+
T Consensus 134 ~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~ 207 (891)
T PRK09405 134 PHGGDLVFF--QGHASPGIYARAFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQ 207 (891)
T ss_pred CCCCCEEEE--CchHHHHHHHHHHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHH
Confidence 587664 45532 335786666677777653 23667888877543 44 456789999999999999
Q ss_pred HHhccc-------ccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCccccccccccC-CccHHHhHhh
Q 019322 156 AYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRA 226 (343)
Q Consensus 156 A~a~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a 226 (343)
|++.|+ ...+++|+|++|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.+++++
T Consensus 208 A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a 287 (891)
T PRK09405 208 ARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRG 287 (891)
T ss_pred HHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhh
Confidence 999994 456789999999999999999999999999999 9999999999999999886433 5789999999
Q ss_pred cCceEEEE--------------------------e-------------------------------------------CC
Q 019322 227 YGVRSIRV--------------------------D-------------------------------------------GN 237 (343)
Q Consensus 227 ~G~~~~~V--------------------------d-------------------------------------------G~ 237 (343)
|||.++.| | ||
T Consensus 288 ~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGH 367 (891)
T PRK09405 288 AGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGH 367 (891)
T ss_pred CCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCC
Confidence 99999999 4 99
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCC
Q 019322 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272 (343)
Q Consensus 238 d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gH 272 (343)
|+.+|++|+++|.+. .++|++|.++|.+.+|-
T Consensus 368 D~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 368 DPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGM 399 (891)
T ss_pred CHHHHHHHHHHHHhC---CCCCEEEEEeceecCCC
Confidence 999999999988864 47899999999998886
No 41
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=7.2e-22 Score=195.89 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC--C-------CcEEEccCcch------HHHHHcCCCHHH
Q 019322 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREP------GVLLWRGFSMQE 109 (343)
Q Consensus 45 m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~--~-------~D~v~~~yR~~------~~~l~~G~~~~~ 109 (343)
|-.+|..+-.+......|..++..+.. +...+-....++ + .|.++.+ .|| ++....|....+
T Consensus 14 ~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 14 VNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred hhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCcHH
Confidence 555676666665555566544332221 222222222233 1 3655543 444 444557877777
Q ss_pred HHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccC-CCeEEEEeCccccCcchHHHHHHH
Q 019322 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNF 188 (343)
Q Consensus 110 ~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~ 188 (343)
-|.+|+.. |+..+.|+..+.+.+...+|++|++++.|+|+|++.|+.+. +..|+|++|||+++||..|||+++
T Consensus 91 dl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 78888864 77788898866666777899999999999999999999887 889999999999999999999999
Q ss_pred HHhCCC-CEEEEEEcCCCccccccccccCCccHHH-hHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 189 SAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 189 A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~-~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
|+.|+| ++|+|.+||+.++++++...+. +++.+ ++++|||++..|||+|++++.+++.+|+. ..++|++|-++|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 8999999999999998887654 56666 99999999999999999999999999874 257999999999
Q ss_pred ecCCC
Q 019322 267 YRVGH 271 (343)
Q Consensus 267 ~R~~g 271 (343)
+..+|
T Consensus 241 ~~g~G 245 (632)
T KOG0523|consen 241 FIGRG 245 (632)
T ss_pred eeecC
Confidence 98764
No 42
>PRK05261 putative phosphoketolase; Provisional
Probab=99.84 E-value=7.2e-20 Score=190.56 Aligned_cols=202 Identities=21% Similarity=0.225 Sum_probs=158.5
Q ss_pred CcccccccchhhHHHHHHHhcCCCC--cEEEccCcchHHHH------HcC--------CCHHHH-HHHhhcCCCCCCCCC
Q 019322 63 RISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVLL------WRG--------FSMQEF-ANQCFGNKADYGKGR 125 (343)
Q Consensus 63 ~i~~~~~~~G~Ea~~v~~~~~l~~~--D~v~~~yR~~~~~l------~~G--------~~~~~~-~~~~~g~~~~~~~G~ 125 (343)
.+|+|.++.|+-.+.+++...++.. |+++..--||+..+ .-| ++.++. |..++.+- +.-.
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf---s~pg 124 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF---SFPG 124 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc---cCCC
Confidence 3578999999999999999998865 66665556664322 246 233331 33333221 1123
Q ss_pred CcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchH---HHHHHHHHhCCC-CEEEEEE
Q 019322 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICR 201 (343)
Q Consensus 126 ~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~ 201 (343)
++++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++...++ +|+.|++
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 200 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEE
Confidence 688999877789999999999999999999975 47889999999999999984 888888888888 7899999
Q ss_pred cCCCccccccccc-cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEE
Q 019322 202 NNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEA 264 (343)
Q Consensus 202 nN~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~-----------~~r~~---~gP~--lIe~ 264 (343)
+|+|+|++++... ...+++.+++++|||+++.|||+|+.++++++++|++ .||.+ .+|+ +|.+
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~ 280 (785)
T PRK05261 201 LNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVL 280 (785)
T ss_pred ecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 9999999999865 4457899999999999999999999999988776654 44445 5899 9999
Q ss_pred EEecCCC
Q 019322 265 LTYRVGH 271 (343)
Q Consensus 265 ~t~R~~g 271 (343)
+|....|
T Consensus 281 rT~kG~g 287 (785)
T PRK05261 281 RTPKGWT 287 (785)
T ss_pred ECCccCC
Confidence 9988554
No 43
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.83 E-value=8.8e-21 Score=173.64 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=147.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHHHc
Q 019322 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (343)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (343)
|.+...+|.++|.++-..+ |.+ .+....+.| +++.++.|--...+++..+|+ |.|.++. .|...+|-+..
T Consensus 7 p~dlk~ls~~eL~~La~ei---R~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQEI---REF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHHTTS-GGGHHHHHHHH---HHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHH---HHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 3445678888888776655 433 222222233 577788999889999999997 7887765 78888988888
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCC-cccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchH
Q 019322 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (343)
Q Consensus 104 G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~-~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~ 182 (343)
|.. +.|..++.. .++++.+...+.. -.+..|+-+.+++.|+|+|.|..+.+.+..||+++|||++.-|+.
T Consensus 80 GR~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 80 GRR--DRFHTLRQY-------GGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTC--CCGGGTTST-------TS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred CcH--HHhchhhhc-------CCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 742 334555432 2344433332222 234689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCCccccccccc-------cCC---------------------------c-cH----HHh
Q 019322 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQ-------FRS---------------------------D-GA----VVK 223 (343)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~-------~~~---------------------------~-~~----~~~ 223 (343)
+||||-|...+-++|+|++||+.+|+.++..- ... . .+ ..+
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~l 230 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNL 230 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CC
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999987653210 000 0 00 134
Q ss_pred HhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 224 GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 224 a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
++.+|+.++ .|||||..++.++++.+++ -++|+||+++|
T Consensus 231 Fe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 231 FEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp CHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 677799887 5899999999999988776 58999999987
No 44
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.82 E-value=5.5e-19 Score=166.64 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=164.7
Q ss_pred cCcchHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCC
Q 019322 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (343)
Q Consensus 93 ~yR~~~~~l~~G~~~~-~~~~~~~g~~~------~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~ 165 (343)
.||||+.+..+|.++. .++.+.+++.+ ||+.+.++.+|+.. .++....+++|.++++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999998877 88888888776 77777666666554 355566889999999999999998876655
Q ss_pred C-eEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccccccc-----------------ccCCccHHHhHhhc
Q 019322 166 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD-----------------QFRSDGAVVKGRAY 227 (343)
Q Consensus 166 ~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~-----------------~~~~~~~~~~a~a~ 227 (343)
. .|++++|||++.++.+ |+|+.|..+++|++|||.||++.+.|-.+. .....|+..++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999987776 999999999999999999998755432211 11234788999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHh--------------
Q 019322 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRT-------------- 292 (343)
Q Consensus 228 G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~-------------- 292 (343)
|++.+ +++-.|+.++.+++++|++ .+||.+|++.+. +.+.-..++. .+.+.-+...+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~sp--C~~~~~~~~~--~~~~~~k~Av~tg~wplye~~~g~~ 242 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAP--CPPGWRFDPD--KTIEIARLAVETGVWPLFEYENGKF 242 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCC--CCCCCCcChH--HHHHHHHHHHHcCCceEEEEECCEE
Confidence 99655 7788899999999999997 489999998752 2221111110 00010000000
Q ss_pred ----------CCCcHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 293 ----------TQDPVTRFRKWIESNG---WWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 293 ----------~~dPi~~~~~~L~~~g---~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
.+.....+++||..+| .+.+++++++++.+.+..+.-...++.+|
T Consensus 243 ~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~~~~ 300 (300)
T PRK11864 243 KLNSPSKTLLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAKKFG 300 (300)
T ss_pred EEccCCccccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 0001134566666555 56788888888887777776655566654
No 45
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.81 E-value=7.1e-19 Score=175.67 Aligned_cols=226 Identities=16% Similarity=0.169 Sum_probs=169.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHHH
Q 019322 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (343)
Q Consensus 26 ~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (343)
.|.+...+|.++|.++-..+ |.+ .+......| ++..+..|--...+++..+++ |.|.++. .|....|-+.
T Consensus 10 ~P~dLk~ls~~eL~~La~Ei---R~~--li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiL 82 (627)
T COG1154 10 SPADLKKLSIEELPQLADEI---REF--LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKIL 82 (627)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHh
Confidence 34556788888888876655 332 223333333 567788998889999999997 7886664 7898899888
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCC-CcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcch
Q 019322 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (343)
Q Consensus 103 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~ 181 (343)
.|.. +.|..++.. .+++..+...+. .-+..+|+-+++++.|+|+|.|..+++.++.||+++||||+.-|+
T Consensus 83 TGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 83 TGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred cCch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 8863 667777653 233333332222 234568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hCCCCEEEEEEcCCCccccccccc-------cCC----------------------------ccH-----
Q 019322 182 FHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ-------FRS----------------------------DGA----- 220 (343)
Q Consensus 182 ~~Eal~~A~-~~~Lpvi~vv~nN~~~~~~~~~~~-------~~~----------------------------~~~----- 220 (343)
.+||||.|. ..+-|+|+|++||+.+|+.+...- ... .+.
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 999999998 445699999999999998764310 000 000
Q ss_pred --HHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCC
Q 019322 221 --VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (343)
Q Consensus 221 --~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 271 (343)
...++.+|+.++ .|||||.+++..+++.+.+ .++|+||+++|-+..|
T Consensus 234 ~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKG 283 (627)
T COG1154 234 VPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKG 283 (627)
T ss_pred CchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCC
Confidence 126788899888 5899999999999988776 5899999999977654
No 46
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.80 E-value=7e-19 Score=154.25 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=93.8
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccccc------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~------ 213 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|++. .++|++|++++||+++||.|| +|++......
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 3578999999999999885 68899999999999853 577999999999987776555 6887653322
Q ss_pred -----ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.....|+.+++++||+++.+|+ +++++.++++++.+ .++|+|||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1245689999999999999999 79999888888775 47999999976
No 47
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.79 E-value=4.2e-19 Score=159.11 Aligned_cols=119 Identities=23% Similarity=0.293 Sum_probs=97.1
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEE-EcCCCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++|| +|++|++.....
T Consensus 52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~ 125 (196)
T cd02013 52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRF 125 (196)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCc
Confidence 588999999999999884 78899999999999863 466999999999987776 555677643211
Q ss_pred --cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
......|+.++|++||+++++|+ ++.++..++++|++.+|. ++|+|||+.+.+.
T Consensus 126 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 126 VGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 12235789999999999999999 899999999999875544 7899999999654
No 48
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.79 E-value=9.7e-19 Score=151.80 Aligned_cols=115 Identities=30% Similarity=0.362 Sum_probs=95.4
Q ss_pred cccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccc-------
Q 019322 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------- 212 (343)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~------- 212 (343)
...|+||+++|.|+|++++. ++++|+|++|||++++ .+++|++|.++++|+++||.||++...+...
T Consensus 43 ~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~ 116 (168)
T cd00568 43 TGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGG 116 (168)
T ss_pred CCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCC
Confidence 45789999999999999986 4789999999999986 5699999999999999988888754433321
Q ss_pred ----cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
......++.+++++||+++++|+ +++++.++++++.+ .++|++||++|
T Consensus 117 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 117 RVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 22345689999999999999998 68888888887764 68999999975
No 49
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.78 E-value=1.4e-18 Score=156.28 Aligned_cols=121 Identities=22% Similarity=0.246 Sum_probs=97.2
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc-------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 212 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.||+ |++.....
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 3588999999999999885 78899999999999854 4679999999999888777775 66532110
Q ss_pred -------c------ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 -------D------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 -------~------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
. .....|++++|++||+++.+|+ +++++.+++++|++.+++.++|+|||+++.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0 0013689999999999999998 89999999999986544457999999998553
No 50
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.77 E-value=5.7e-18 Score=174.85 Aligned_cols=226 Identities=10% Similarity=0.042 Sum_probs=165.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--cCcchHHHH
Q 019322 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLL 101 (343)
Q Consensus 26 ~~~~~~~~s~~~~~~~~~~m~~~R~~e~~~~~~-~~~g~i~~~~~~~G~Ea~~v~~~~~l~-~~D~v~~--~yR~~~~~l 101 (343)
.|.+...+|.++|.+|-..+ |.+ .+... .+.| ++..++.|--...+++..+|+ |.|.++. .|....|-+
T Consensus 84 ~P~dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKi 156 (701)
T PLN02225 84 TPLQLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKV 156 (701)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhH
Confidence 34455677777777776655 433 22333 2343 566789999899999999997 7887665 789889988
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCC-CcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcc
Q 019322 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (343)
Q Consensus 102 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG 180 (343)
..|.. +.|.. +. -.+++..+...+. --.+..||-+++++.|+|+|.|..+++.++.||+++|||++.-|
T Consensus 157 LTGR~--~~f~~-Rq-------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgG 226 (701)
T PLN02225 157 LTRRW--SAIPS-RQ-------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAG 226 (701)
T ss_pred hcCCh--hhcCc-cc-------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhh
Confidence 88852 33331 21 1223333332222 22346899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcCCCccccc--------ccc--------------------------ccCC--ccH----
Q 019322 181 DFHAALNFSAVTEAPVIFICRNNGWAISTP--------ISD--------------------------QFRS--DGA---- 220 (343)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~--------~~~--------------------------~~~~--~~~---- 220 (343)
+.+||||-|+..+-|+|+|++||+.+|+.+ +.. ..+. ..+
T Consensus 227 ma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (701)
T PLN02225 227 QAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKV 306 (701)
T ss_pred hHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999887 110 0000 000
Q ss_pred -----------H-HhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCC
Q 019322 221 -----------V-VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (343)
Q Consensus 221 -----------~-~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 270 (343)
. .+++.+|+.++ .|||||.+++..+++++++. ...+|+||+++|-+..
T Consensus 307 ~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 307 DEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 1 36688899888 58999999999999988764 1149999999997655
No 51
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.77 E-value=2.1e-18 Score=151.87 Aligned_cols=112 Identities=29% Similarity=0.305 Sum_probs=93.6
Q ss_pred ccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc--------
Q 019322 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~-------- 213 (343)
|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|++|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999985 578999999999998774 679999999999988888885 887542110
Q ss_pred ---------ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 ---------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.....|+.+++++||+++.+|+ +++++.+++++|.+ .++|++||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1234689999999999999999 59999999988876 47999999864
No 52
>PRK06163 hypothetical protein; Provisional
Probab=99.76 E-value=1.4e-17 Score=149.77 Aligned_cols=130 Identities=20% Similarity=0.162 Sum_probs=101.8
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhC-CCCEEEEEEcC-CCcccccccc-ccCCc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRSD 218 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~nN-~~~~~~~~~~-~~~~~ 218 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+++++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLM--QLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHH--HHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999984 7889999999999974 45679999887 68987777777 6876432221 12346
Q ss_pred cHHHhHhhcCce-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 019322 219 GAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 288 (343)
Q Consensus 219 ~~~~~a~a~G~~-~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~ 288 (343)
|+.++|++||++ +++|+ ++.++..+++++++ .++|+|||+++.+.. +-+...|++.|++
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 899999999998 67888 89999999999876 479999999986532 2233457887764
No 53
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.75 E-value=1.4e-17 Score=146.94 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=93.8
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc--------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-------- 211 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ +.| |.++.++++|+++||.||+ |++....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 3589999999999999884 67899999999999876 454 8899999999988888774 7763211
Q ss_pred -ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.......|+.+++++||+++.+++ +++++.++++++++ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 78898888887765 4799999999854
No 54
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.75 E-value=1.3e-17 Score=147.23 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=94.5
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc--------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-------- 211 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.|| +|++....
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m--~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMM--NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHh--HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3579999999999999984 7889999999999974 4467999999999987775555 57764211
Q ss_pred -ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 111234689999999999999998 89999999999876 4799999999854
No 55
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.74 E-value=4.5e-17 Score=145.05 Aligned_cols=118 Identities=19% Similarity=0.120 Sum_probs=94.4
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcC-CCccccccccccCCc
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNN-GWAISTPISDQFRSD 218 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN-~~~~~~~~~~~~~~~ 218 (343)
++|+||+++|.|+|+++|. ++++|||++|||+|++ ..++|.+++++++ |+++||.|| +|++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 3599999999999999985 6789999999999974 4577999999997 676666655 576643222222346
Q ss_pred cHHHhHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCC
Q 019322 219 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (343)
Q Consensus 219 ~~~~~a~a~G~~~-~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 270 (343)
|+.++|++||+++ .+|+ ++.++.++++++++ .++|+|||+.+.+..
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 8999999999997 5788 89999999998875 479999999996654
No 56
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.74 E-value=1.8e-17 Score=147.19 Aligned_cols=115 Identities=26% Similarity=0.330 Sum_probs=92.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.||+ |++....
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~--~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQM--NIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhc--cHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 478999999999999885 6789999999999985 34669999999999877777665 5542210
Q ss_pred c--cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~--~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ......|+.++|++||+++++|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11234689999999999999999 68888888887765 5899999999964
No 57
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.74 E-value=1.9e-17 Score=143.37 Aligned_cols=113 Identities=13% Similarity=0.056 Sum_probs=92.3
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhC-CCCEEEEEEcC-CCccccccccccCCcc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISDQFRSDG 219 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~nN-~~~~~~~~~~~~~~~~ 219 (343)
.|+||+++|.|+|+++|. + ++|||++|||+|++. ..+|.+++++ ++|+++||.|| +|++...........|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999999743 3558999998 59987777555 6776543322223578
Q ss_pred HHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
+.++|++||+++++|+ +++++.++++++++ .++|++|++.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9999999999999997 89999999999886 479999999884
No 58
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.74 E-value=4.9e-17 Score=143.76 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=92.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEE-EEcCCCcccccccccc-CCc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFI-CRNNGWAISTPISDQF-RSD 218 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~v-v~nN~~~~~~~~~~~~-~~~ 218 (343)
.|+||+++|.|+|+++|.+ ++|||++|||+|+++ ..++.++.++++ |+++| ++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 6999999999999999863 789999999999743 357889999995 66555 6777888765432222 256
Q ss_pred cHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCC
Q 019322 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (343)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 270 (343)
++.++|++||+++.+|+| +++++.++++++. ++|++||+.|.+..
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 899999999999999997 7888888887765 58999999996544
No 59
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.73 E-value=6e-17 Score=143.43 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=91.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCC-Ccccccccccc-CCc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RSD 218 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~-~~~ 218 (343)
.|++|+++|.|+|+++|. +++|||++|||+|+++ .++|.+|+++++ |+++||.||+ |++........ ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 689999999999999984 6789999999999854 367999999995 9988877664 77754222111 256
Q ss_pred cHHHhHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 219 GAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 219 ~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
|+.++|++||+++.+ |+ ++.++.++++ +.+ .++|+||++.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 76 8999988885 554 4799999999854
No 60
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.73 E-value=2.5e-17 Score=148.65 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=93.2
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc-------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~------- 212 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|+++++|+++||.|| +|++.....
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 3588999999999999884 78899999999999864 356999999999976655554 676532100
Q ss_pred ------c----------ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 ------D----------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 ------~----------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
. .....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0 0124689999999999999997 99999999998875 48999999999653
No 61
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.73 E-value=6.3e-17 Score=142.80 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=92.2
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccccc------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~------ 213 (343)
..|+||+++|.|+|+++|. ++++||+++|||+|++.. +++|.+|+++++|+++||.|| +|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 4789999999999999986 578999999999996421 578999999999987666655 5655432211
Q ss_pred ---ccCCccHHHhHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 ---QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.....|+.+++++||+++++| ++++..++.+++++|++ .++|++|+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112468999999999999999 67777777788888875 47999999864
No 62
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.70 E-value=1.1e-16 Score=137.72 Aligned_cols=114 Identities=28% Similarity=0.392 Sum_probs=92.8
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc-------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 212 (343)
..++||+++|.|+|+++| .|+++|||++|||+|... ..+|.+|.++++|+++||.||+ |++.....
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 478999999999999998 478999999999999754 5669999999999877777664 55532211
Q ss_pred ---c---ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 213 ---D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 213 ---~---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
. .....|+.+++++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 1 14567899999999999999996666999999999985 589999996
No 63
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.70 E-value=8.8e-17 Score=141.52 Aligned_cols=112 Identities=25% Similarity=0.242 Sum_probs=90.0
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.+.+|+++|.|+|+++|. +++|||++|||+|++. ..+|.+|.++++|+++||.|| +|++.....
T Consensus 50 ~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~ 122 (175)
T cd02009 50 ASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF 122 (175)
T ss_pred ccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh
Confidence 378999999999999984 6789999999999753 467999999999987776666 466422111
Q ss_pred -ccc---CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 213 -DQF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 213 -~~~---~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
... ...|+.++|++||+++.+|+ +++++..+++++++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 123 ERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 011 24689999999999999998 89999999998875 47999999976
No 64
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.68 E-value=2.8e-16 Score=139.40 Aligned_cols=117 Identities=23% Similarity=0.271 Sum_probs=92.6
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEE-EEEEcCCCccccccc------c
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS------D 213 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi-~vv~nN~~~~~~~~~------~ 213 (343)
..|+||+++|.|+|+++|. ++++|+|++|||+|++ .++| |.+|+++++|++ +|++||+|++..... .
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 3589999999999999985 6789999999999975 3555 889999999865 455566787643211 1
Q ss_pred ccCCccHHHhHhhcC----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 214 QFRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 214 ~~~~~~~~~~a~a~G----~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.....|+.++|++|| +++.+|+ +++++.++++++++. .++|+|||+.+.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~~---~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALFN---RDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 123468999999999 7888887 899999999988861 4799999999865
No 65
>PRK07524 hypothetical protein; Provisional
Probab=99.68 E-value=2e-16 Score=161.96 Aligned_cols=118 Identities=27% Similarity=0.321 Sum_probs=98.1
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccc---------cc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST---------PI 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~---------~~ 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 489999999999999984 78999999999999743 355999999999998887777 677432 11
Q ss_pred ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCC
Q 019322 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (343)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 271 (343)
.......|+.++|++||+++++|+ +++++.++++++++ .++|+|||++++|..+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112345689999999999999998 89999999998876 5899999999999875
No 66
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.67 E-value=2.9e-16 Score=160.62 Aligned_cols=117 Identities=27% Similarity=0.360 Sum_probs=97.1
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccccc----
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF---- 215 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~~---- 215 (343)
..|+||+++|.|+|++++. |++.|||++|||+|++ ..++|.+|.++++|+++||.||+ |++........
T Consensus 406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m--~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~ 479 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMM--NGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGR 479 (550)
T ss_pred CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhc--cHHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCC
Confidence 4689999999999999885 7899999999999984 46779999999999988888876 66543222111
Q ss_pred -----CCcc-HHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 216 -----RSDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 216 -----~~~~-~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
.... +.++|++||+++++|+ +++++..++++|++ .++|+||++.+.+.
T Consensus 480 ~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 480 YSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred cceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 1122 9999999999999999 99999999999987 58999999999765
No 67
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.67 E-value=4.6e-16 Score=160.44 Aligned_cols=119 Identities=23% Similarity=0.285 Sum_probs=100.0
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc----------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------- 210 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~---------- 210 (343)
.|+||+++|.|+|+++| .++++|||++|||+|+++....++++|+++++|+++||.|| +|++...
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 57999999999999987 37899999999999998765567999999999998888877 6776321
Q ss_pred ------c-cccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 211 ------I-SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 211 ------~-~~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
. ...+ +..|+.++|++||+++.+|+ +++++..++++|++.++++++|+|||+.+
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 1111 45689999999999999998 99999999999998777778899999987
No 68
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.66 E-value=3.1e-16 Score=162.25 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=96.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc-------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------- 213 (343)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|+++++|+++||.||+ |++......
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 488999999999999885 78899999999999864 4679999999999877766664 765321100
Q ss_pred -----c--------cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 214 -----Q--------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 214 -----~--------~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
. ....|+.++|++||+++.+|+ +++++..++++|++.+++.++|+|||+.+.+.
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 0 013689999999999999998 89999999999986443357999999999553
No 69
>PRK12474 hypothetical protein; Provisional
Probab=99.65 E-value=5.9e-16 Score=157.92 Aligned_cols=113 Identities=28% Similarity=0.228 Sum_probs=92.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m--~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAY--TMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcc--hHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 589999999999999985 7899999999999985 44779999999999877777764 7753210
Q ss_pred c------c--ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 212 S------D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 212 ~------~--~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
. . ..+..|+.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 1123589999999999999999 89999999998875 47999999864
No 70
>PRK06154 hypothetical protein; Provisional
Probab=99.65 E-value=8.3e-16 Score=158.38 Aligned_cols=118 Identities=24% Similarity=0.239 Sum_probs=95.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++.....
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 589999999999999985 78999999999999854 4679999999999888777774 76432110
Q ss_pred cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 ~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
......|+.++|++||+++++|+ +++++..++++|++..+ .++|+|||+.+.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 01113589999999999999999 89999999999987432 3689999999854
No 71
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.65 E-value=1.3e-15 Score=136.17 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=89.3
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccccc------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~------ 213 (343)
.++||+++|.|+|+++|. ++++||++.|||++ +.+ ..+|.+|.++++|+++||.|| .|++......
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 378999999999999884 78999999999994 543 466999999999998777766 4665432110
Q ss_pred ----------ccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 ----------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 ----------~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
..+..|+.+++++||++++ ++.-.++.++.+++++|++ .++|++||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 0123589999999999985 2233489999999999986 48999999975
No 72
>PRK08266 hypothetical protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=155.38 Aligned_cols=118 Identities=27% Similarity=0.336 Sum_probs=96.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|++++. ++++|||++|||+|+++ .++|.+|.+++||+++||.|| +|++.....
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 489999999999998874 78899999999999876 477999999999998877777 587532111
Q ss_pred --cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCC
Q 019322 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (343)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 271 (343)
......|+.++|++||+++++|+ +++++..+++++.+ .++|+|||+.++|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 11234689999999999999999 78899998888875 4789999999987654
No 73
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.64 E-value=1.4e-15 Score=155.63 Aligned_cols=113 Identities=29% Similarity=0.362 Sum_probs=94.0
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccc----------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------- 210 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------- 210 (343)
.|+||+++|.|+|+++|. ++++|+|++|||+|+++ .++|++|.++++|+++||.||+ |++...
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 689999999999999985 67899999999999976 4789999999999988888776 876321
Q ss_pred cccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
........|+.+++++||+++++|+ ++.++.++++++.+ .++|+|||+.+
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 1112245689999999999999998 78888888877764 58999999986
No 74
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.64 E-value=4.6e-15 Score=144.40 Aligned_cols=133 Identities=19% Similarity=0.124 Sum_probs=100.5
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCC-CccccccccccCCc
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~~~~ 218 (343)
+.|+||+++|.|+|+|+|. ++++|||+.|||+|.+ ...+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 4699999999999999985 6789999999999973 3467999999997 8888877775 55543322222357
Q ss_pred cHHHhHhhcCc-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 019322 219 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 288 (343)
Q Consensus 219 ~~~~~a~a~G~-~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~ 288 (343)
|+.++|++||+ .+++|+ +++++.++++++.+ .++|+|||+++.+.....- +.-..++.|.+
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~~~~l---~rp~~~p~e~~ 354 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGSRADL---GRPTTSPPENK 354 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCccCC---CCCCCCHHHHH
Confidence 89999999997 577776 99999999998865 4789999999866443222 22235566653
No 75
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.64 E-value=1.2e-15 Score=157.30 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=94.0
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999999884 78899999999999743 3569999999999988888875 55432110
Q ss_pred --cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
......|+.+++++||+++.+|+ +++++..+++++.+ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 12234689999999999999997 89999888888876 4899999999854
No 76
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.63 E-value=1.6e-15 Score=157.27 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=94.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999984 78999999999999853 4669999999999888877775 6653210
Q ss_pred ccc--cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
... ....|+.++|++||+++++|+ +++++..++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 124689999999999999998 99999999999886 3789999999965
No 77
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.63 E-value=1.6e-15 Score=155.38 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=94.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.|| +|++.....
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLF--SSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhc--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 579999999999999985 6889999999999985 4466999999999987776666 576532110
Q ss_pred -cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
..+...|+.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 01235689999999999999999 89999999998876 47899999999653
No 78
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.63 E-value=2.4e-15 Score=155.30 Aligned_cols=116 Identities=23% Similarity=0.277 Sum_probs=94.2
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc---------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP--------- 210 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~--------- 210 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.|| +|++...
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999999985 78899999999999853 456999999999986666666 5776311
Q ss_pred cccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
........|+.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0011234689999999999999998 89999999998876 4789999999865
No 79
>PRK07586 hypothetical protein; Validated
Probab=99.63 E-value=1.5e-15 Score=154.80 Aligned_cols=113 Identities=30% Similarity=0.248 Sum_probs=91.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|.+++||+++||.|| +|++....
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999985 7899999999999984 4577999999999986666555 57753210
Q ss_pred -c-----ccc--CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 212 -S-----DQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 212 -~-----~~~--~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
. ... +..|+.++|++||+++++|+ ++.++..++++|++ .++|+|||+.+
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 011 24689999999999999998 89999999988875 47999999863
No 80
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.63 E-value=1.1e-15 Score=158.29 Aligned_cols=119 Identities=23% Similarity=0.221 Sum_probs=96.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc-----c--
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-----D-- 213 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-----~-- 213 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.++++|+++||.||+ |++..... .
T Consensus 418 ~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~ 491 (591)
T PRK11269 418 AGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYC 491 (591)
T ss_pred cccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCcc
Confidence 589999999999999884 68899999999999853 4669999999999988877776 66432100 0
Q ss_pred -c------------cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 214 -Q------------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 214 -~------------~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. .+..|++++|++||+++.+|+ +++++..++++|++.+.+.++|+|||+++.+
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 492 VQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 023689999999999999998 9999999999998644335799999999965
No 81
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.63 E-value=2.7e-15 Score=155.04 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=95.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccc--------ccc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PIS 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~~~ 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|+++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~ 480 (578)
T PRK06546 407 HGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDF 480 (578)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcc
Confidence 589999999999999985 68899999999999853 3569999999999988877775 56531 111
Q ss_pred -cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
......|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 532 (578)
T PRK06546 481 GTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDPN 532 (578)
T ss_pred cccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 11345689999999999999998 89999999998876 47999999998543
No 82
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.63 E-value=2.4e-15 Score=138.40 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=92.1
Q ss_pred ccccccccCchHHHHHHHHhcccccCCCeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc---
Q 019322 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--- 213 (343)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~--- 213 (343)
+...++||+++|.|+|++++ .++++|||++|||++ +.+ .++|.+|+++++|+++||.||+ |++...+..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457899999999998665 478999999999995 544 4679999999999988888885 663211110
Q ss_pred ------------------ccCCccHHHhHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 214 ------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 214 ------------------~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
.....|+.++|+++|++++. +...+++++.+++++|++ .++|+|||+.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~ 200 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSP 200 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 11336899999999999863 455699999999999886 478999999874
No 83
>PRK05858 hypothetical protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=155.42 Aligned_cols=115 Identities=22% Similarity=0.153 Sum_probs=94.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.|| .|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 579999999999999985 78999999999999854 456999999999987777666 576532110
Q ss_pred --cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
...+..|+.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11145789999999999999999 99999999999886 5799999999954
No 84
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.62 E-value=8e-14 Score=140.60 Aligned_cols=227 Identities=19% Similarity=0.187 Sum_probs=164.1
Q ss_pred HHHHhcCCCC------cEEEc-cCcchHHHH---HcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCC-CCcc-cccccc
Q 019322 78 IASAAAIKND------DFVVP-QYREPGVLL---WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYF-TVSSTI 145 (343)
Q Consensus 78 v~~~~~l~~~------D~v~~-~yR~~~~~l---~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~-~~~g~l 145 (343)
|+....+++. |.||- .|-.++.+. ..|.-.++-|..|+... .|.++++.|+... +.++ +++++|
T Consensus 119 v~fnhffr~~~~~~ggDlV~~qgHaSPg~yArafLeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSm 194 (887)
T COG2609 119 VGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSM 194 (887)
T ss_pred HHHHHHhcCcCCCCCCceEEEecCCCchHHHHHHHhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccc
Confidence 4555566654 87775 455554443 46877777888888653 3677777666543 4454 568999
Q ss_pred cCchHHHHHHHHhcccc-------cCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCcccccccccc-C
Q 019322 146 ATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF-R 216 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~-~ 216 (343)
|-|...|+-.|.-.|+. .++++|+||.|||++.|+...+++.+|++++| |+||||+.|....+.|+.... -
T Consensus 195 GLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngki 274 (887)
T COG2609 195 GLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKI 274 (887)
T ss_pred cccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchh
Confidence 99999999999888763 46789999999999999999999999999999 999999999999988876541 1
Q ss_pred CccHHHhHhhcCceEEE---------------------------------------------------------------
Q 019322 217 SDGAVVKGRAYGVRSIR--------------------------------------------------------------- 233 (343)
Q Consensus 217 ~~~~~~~a~a~G~~~~~--------------------------------------------------------------- 233 (343)
...+..++++.||.+++
T Consensus 275 iqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~ 354 (887)
T COG2609 275 IQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDD 354 (887)
T ss_pred HHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHH
Confidence 23577888888998876
Q ss_pred ------EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHc
Q 019322 234 ------VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 307 (343)
Q Consensus 234 ------VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~ 307 (343)
--|||+..|++|+++|.+. .++|++|.++|.+.+|-...-.. -......+.. ..|-|+.||+++-=
T Consensus 355 diw~L~rGGHD~~ki~aA~~~A~~~---kg~PtvilA~TIKGyglg~~~eg--~n~aHq~kkm--~~~~l~~~Rdr~~i- 426 (887)
T COG2609 355 DIWALNRGGHDPEKVYAAFKKAQEH---KGRPTVILAKTIKGYGLGEAAEG--KNIAHQVKKM--TPDQLKEFRDRFGI- 426 (887)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcC---CCCceEEEEeeeccccCchhhcc--cchhhhhhcC--CHHHHHHHHhhcCC-
Confidence 2389999999999999985 46999999999888764322111 1222233221 13556666665422
Q ss_pred CCCCHHHHHH
Q 019322 308 GWWNGDIESE 317 (343)
Q Consensus 308 g~~~~~~~~~ 317 (343)
.++++++++
T Consensus 427 -pvsd~e~e~ 435 (887)
T COG2609 427 -PVSDAELEE 435 (887)
T ss_pred -CCchhhhhc
Confidence 256666655
No 85
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.61 E-value=2.5e-15 Score=156.35 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=94.6
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc-------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 212 (343)
..|+||+++|.|+|+++|. +++.|||++|||+|++ ...+|.+|++++||+++||.||+ |++.....
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLM--NIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999985 7899999999999984 45669999999999988877775 55422110
Q ss_pred ---ccc--CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 ---DQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 ---~~~--~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
..+ ...|+.++|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011 34689999999999999998 99999999998886 4789999999964
No 86
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.61 E-value=4.1e-15 Score=153.00 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=94.7
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc-c------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-S------ 212 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-~------ 212 (343)
..|+||+++|.|+|++++. ++++|||++|||+|++ ..++|.+|+++++|+++||.||+ |++.... .
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~--~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLM--NGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 3689999999999998874 7889999999999984 45779999999999988888886 7753211 0
Q ss_pred ---cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
......|+.+++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 11234689999999999999999 88899888888775 5799999999854
No 87
>PRK07064 hypothetical protein; Provisional
Probab=99.61 E-value=3.2e-15 Score=153.32 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=93.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++ ...+|.+|.++++|+++||.|| +|++....
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLML--NLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 478999999999999984 7889999999999985 3467999999999987776665 57653211
Q ss_pred -ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
.......|+.++|++||+++.+|+ +++++..++++|++ .++|+|||+.++
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 112234689999999999999998 89999999998875 478999999986
No 88
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.61 E-value=4.5e-15 Score=152.50 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=93.6
Q ss_pred cccccCchHHHHHHHHhcccccC-CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP--------- 210 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~--------- 210 (343)
.|+||+++|.|+|+++|. + +++|||++|||+|++ ...+|.+|++++||+++||.|| +|++...
T Consensus 395 ~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~--~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~ 468 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTM--TMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPE 468 (549)
T ss_pred cchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhh--hHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCc
Confidence 589999999999999885 5 789999999999984 4567999999999987666655 5765321
Q ss_pred cccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
........|+.++|++||+++++|+ +++++..+++++++ .++|+|||+++.+
T Consensus 469 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 469 WGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 0111234689999999999999998 99999999998876 4789999999954
No 89
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.61 E-value=4.6e-15 Score=153.16 Aligned_cols=118 Identities=23% Similarity=0.258 Sum_probs=95.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQM--NIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 489999999999999985 7889999999999985 45779999999999877777774 6652210
Q ss_pred cc-cc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SD-QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~-~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.. .. ...|+.++|++||+++++|+ +++++..++++|.+.++ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 11 11 34689999999999999998 99999999999987543 3689999999964
No 90
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.60 E-value=6e-15 Score=152.43 Aligned_cols=115 Identities=28% Similarity=0.371 Sum_probs=93.7
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|+ +..++|++|+++++|+++||.||+ |++.....
T Consensus 436 ~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhhC----CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 478999999999998874 688999999999997 567889999999999988888885 44322100
Q ss_pred --cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
......|+.++|++||+++++|+ +++++..+++++.+ .++|+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 01134689999999999999998 89999888888875 4799999999854
No 91
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.60 E-value=6.5e-15 Score=152.11 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=94.5
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++||+++|||+|++ ...+|.+++++++|+++||.|| +|++....
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m--~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSM--TMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHh--hHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 589999999999998874 7889999999999985 3566999999999987775555 58753210
Q ss_pred ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
...+...|++++|++||+++.+|+ +++++..+++++++ . +.++|+|||+++...
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~~ 534 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITGD 534 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCCC
Confidence 012335689999999999999998 89999999999885 2 247999999999653
No 92
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.60 E-value=2.6e-15 Score=153.97 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=92.5
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc------ccc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI------SDQ 214 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~------~~~ 214 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.|| +|++.... ...
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 589999999999999884 7899999999999984 4577999999999986666555 57653211 112
Q ss_pred cCCccHHHhHhhcCce----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 215 FRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 215 ~~~~~~~~~a~a~G~~----~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
....|+.++|++||++ +.+|+ ++.++.++++++++ .++|+|||+.+.
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 3456899999999996 89998 89999999998875 479999999983
No 93
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.60 E-value=7.7e-15 Score=151.44 Aligned_cols=115 Identities=27% Similarity=0.361 Sum_probs=92.7
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++||+++|||+|++. + .+|++|.++++|+++||.|| +|++....
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~-~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-L-QELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 479999999999999984 78899999999999853 3 45999999999987776666 56653210
Q ss_pred c--cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~--~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ......|+.++|++||+++.+|+ +++++..++++|.+ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 11134689999999999999998 78899888888875 5799999999965
No 94
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.60 E-value=6.7e-15 Score=151.92 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=94.3
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccc---------cc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (343)
.|++|+++|.|+|+++|. ++++|||++|||+|++. .++|.+|.++++|+++||.||+ |++.. ..
T Consensus 420 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~ 493 (574)
T PRK06882 420 AGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRH 493 (574)
T ss_pred cccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcc
Confidence 578999999999999985 67899999999999864 4779999999999988887775 54321 10
Q ss_pred cc-c-cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SD-Q-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~-~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.. . ....|+.++|++||+++++|+ +++++..+++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 494 SQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 11 1 124689999999999999998 899999999988863 3689999999965
No 95
>PLN02573 pyruvate decarboxylase
Probab=99.60 E-value=4.6e-15 Score=153.21 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=93.8
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc----cccC
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----DQFR 216 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~----~~~~ 216 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.|| +|++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999985 6889999999999984 4577999999999987776666 577643211 1224
Q ss_pred CccHHHhHhhcC-----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 217 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 217 ~~~~~~~a~a~G-----~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
..|+.++|++|| +++.+|+ +++++.+++++|++. ..++|+|||+.+.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 468999999995 8999999 899999999998742 1378999999983
No 96
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.60 E-value=7.5e-15 Score=152.00 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=94.3
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccc---------c
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.||+ |++... .
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 479999999999999985 78899999999999854 4779999999999888777775 554221 1
Q ss_pred cc-cc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SD-QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~-~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.. .. ...|+.++|++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 11 11 24689999999999999998 899999999998863 3689999999854
No 97
>PRK08322 acetolactate synthase; Reviewed
Probab=99.59 E-value=7.4e-15 Score=150.73 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=93.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 579999999999999984 78899999999999854 466999999999986666555 67753210
Q ss_pred ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.......|+.++|++||+++++|+ +++++..+++++.+ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011234689999999999999998 89999999998876 4799999999854
No 98
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.59 E-value=8.8e-15 Score=151.04 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=93.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 479999999999999984 78899999999999854 4679999999999877776664 6643210
Q ss_pred cc-cc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SD-QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~-~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.. .. ...|+.++|++||+++.+|+ ++.++..++++|.+. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 01 11 24689999999999999999 899999999988762 3789999999965
No 99
>PRK08617 acetolactate synthase; Reviewed
Probab=99.59 E-value=5.9e-15 Score=151.68 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=93.3
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.|| .|++.....
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLF--SAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhh--hHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 579999999999999884 7889999999999985 3467999999999987666666 566532110
Q ss_pred -cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
......|+.++|++||+++.+|. +++++.+++++|.+ .++|+|||+.+.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 01234689999999999999998 89999999998875 4789999999865
No 100
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.59 E-value=6e-15 Score=136.02 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=90.7
Q ss_pred ccccccCchHHHHHHHHhc-ccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc-----
Q 019322 141 VSSTIATQLPHAVGAAYAL-KMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----- 212 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~-k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~----- 212 (343)
..|+||+++|.|+|+++|. +...++++|||+.|||++. +| +. .+.++.++++|+++||.||+ |++...+.
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~-~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FG-ALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HH-HHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998871 1113688999999999984 44 33 46778889999988887775 55432111
Q ss_pred -----------cccCCccHHHhHhhcCceEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 213 -----------DQFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 213 -----------~~~~~~~~~~~a~a~G~~~~~---VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
......|+.++|++||+++++ |+ ++.++..++++|++ +.++|+||++.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 012346899999999999986 66 79999999998885 1478999999873
No 101
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.58 E-value=1.3e-14 Score=149.20 Aligned_cols=114 Identities=19% Similarity=0.176 Sum_probs=92.5
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccc------c--ccc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~------~--~~~ 212 (343)
.|+||+++|.|+|+++| ++++||+++|||+|++. ..+|.+|+++++|+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 58999999999999997 26889999999999854 3569999999999988888886 4111 0 000
Q ss_pred ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 ~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
... +..|+.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 111 45689999999999999998 99999999998875 4789999999854
No 102
>PRK08611 pyruvate oxidase; Provisional
Probab=99.58 E-value=9.7e-15 Score=150.85 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=94.0
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc---------c
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~---------~ 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|+++++|+++||.|| +|++... .
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 589999999999999875 78899999999999854 467999999999986665555 5765311 0
Q ss_pred ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
.......|+.++|++||+++.+|+ +++++..+++++.+ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~~ 532 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDPN 532 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCc
Confidence 112235789999999999999998 89999999998875 47999999999653
No 103
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=1.3e-14 Score=149.83 Aligned_cols=116 Identities=24% Similarity=0.265 Sum_probs=93.9
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 422 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~ 495 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRH 495 (574)
T ss_pred cchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCce
Confidence 479999999999999985 78899999999999853 467999999999987776666 57653210
Q ss_pred ccc--cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
... ....|+.++|++||+++.+|+ ++.++..++++|++. .++|+|||+++.+
T Consensus 496 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 496 SHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 123689999999999999998 999999999988862 2789999999965
No 104
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=150.22 Aligned_cols=117 Identities=25% Similarity=0.265 Sum_probs=94.3
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhC-----CCCEEEEEEcCC-Ccccccc----
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAISTPI---- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-----~Lpvi~vv~nN~-~~~~~~~---- 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++.. ..+|.+|+++ +||+++||.||+ |++....
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 479999999999999985 788999999999997532 2569999999 899888877774 6543110
Q ss_pred --------ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 212 --------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 212 --------~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
....+..|+.++|++||+++++|+ +++++..++++|++ .++|+|||+++.+.
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~~ 548 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDPN 548 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 011234689999999999999999 89999999999886 47999999999653
No 105
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.58 E-value=1.3e-14 Score=149.96 Aligned_cols=119 Identities=22% Similarity=0.279 Sum_probs=95.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.|| +|++.....
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 479999999999999984 78899999999999864 367999999999987776666 576532110
Q ss_pred --cccCC-ccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 --DQFRS-DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 --~~~~~-~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
..... .|+.++|++||+++++|+ +++++..++++|++..+ .++|+|||+.+.+.
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~-~~~p~lieV~v~~~ 559 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQA-EGKTTVIEIVCTRE 559 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCC-CCCcEEEEEEeCCC
Confidence 01222 489999999999999998 99999999999986432 46899999999653
No 106
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=1.8e-14 Score=148.54 Aligned_cols=116 Identities=24% Similarity=0.296 Sum_probs=93.5
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.+++||+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-I-QELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-H-HHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999985 67899999999999863 3 449999999999887777664 65432110
Q ss_pred --ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
... ...|+.++|++||+++++|+ +++++.+++++|.+ .++|+|||+.+.+.
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~~ 540 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDRF 540 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECCc
Confidence 011 23689999999999999998 89999999988876 47999999999763
No 107
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.58 E-value=1.6e-14 Score=148.80 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=94.5
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. +.| |.+|.++++|+++||.||+ |++.....
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 479999999999999985 68899999999999864 444 9999999999988877775 77643211
Q ss_pred --ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
... ...|+.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 34689999999999999999 89999999988876 4799999999954
No 108
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.57 E-value=1.7e-14 Score=149.24 Aligned_cols=116 Identities=22% Similarity=0.272 Sum_probs=94.0
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccc---------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~--------- 210 (343)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.||+ |++...
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m--~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQM--NLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999985 6889999999999984 45679999999999988888776 554211
Q ss_pred ccc---ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 211 ISD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 211 ~~~---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
... .....|+.+++++||+++++|+ +++++.+++++|++ .++|.|||+.+.+
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 000 1124689999999999999998 89999999988876 4799999999954
No 109
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.57 E-value=2.3e-14 Score=147.68 Aligned_cols=115 Identities=24% Similarity=0.307 Sum_probs=93.8
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc---------c
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~---------~ 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.|| +|++... .
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 479999999999999985 68899999999999854 466999999999987776666 4664321 0
Q ss_pred c-cc-cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S-DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~-~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. .. .+..|+.++|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1 11 135689999999999999998 89999999999885 4799999999965
No 110
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.57 E-value=1.2e-14 Score=150.58 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=96.4
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc--------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-------- 211 (343)
..|+||+++|.|+|+++|. ++++||+++|||+|+++ ..+|.+|+++++|+++||.|| +|++....
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3589999999999999984 68899999999999865 355889999999987777665 67653210
Q ss_pred -c-ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCC
Q 019322 212 -S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (343)
Q Consensus 212 -~-~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 270 (343)
. ... ...|+.++|++||+++++|+ +++++.++++++++..+ .++|+|||+.+.+.+
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~-~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQN-EGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCC-CCCcEEEEEEecccc
Confidence 0 011 23689999999999999998 89999999999987532 368999999997654
No 111
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.57 E-value=1.3e-14 Score=136.35 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=87.8
Q ss_pred ccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc--------
Q 019322 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~-------- 213 (343)
+++|.++|.|+|+++|. |++.||++.|||++.. +-...+.+|+++++|+++||.||+ |++...+..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 47899999999999985 8899999999999853 122346679999999988877774 665331110
Q ss_pred -------c-cCCccHHHhHhhcCceEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 214 -------Q-FRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 214 -------~-~~~~~~~~~a~a~G~~~~---~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
. .+..|+.++|++||++++ +|. ++.++.+++++|++ .+||+|||+.+.
T Consensus 143 ~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 143 TVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred eeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 0 122477999999999975 566 99999999999987 489999999874
No 112
>PLN02470 acetolactate synthase
Probab=99.57 E-value=2.5e-14 Score=148.04 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=93.1
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc---------c
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~---------~ 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.++++|+++||.|| +|++... .
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 489999999999999985 78899999999999854 467999999999987776666 4654311 0
Q ss_pred c-cccC--------CccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S-DQFR--------SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~-~~~~--------~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. .... ..|+.++|++||+++.+|+ +++++..+++++.+ .++|+|||+.+.+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 0011 1589999999999999998 89999999999876 4789999999964
No 113
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.56 E-value=2.2e-14 Score=148.03 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=94.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (343)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|.++++|+++||.|| +|++.....
T Consensus 420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRI 493 (572)
T ss_pred cccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 589999999999999985 68899999999999854 367999999999987777766 477543110
Q ss_pred --ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
..+ ...|+.++|++||+++++|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred ccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011 34689999999999999998 89999999998875 4799999999965
No 114
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.56 E-value=2.6e-14 Score=147.41 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=92.7
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-C--ccc----c--ccc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIS----T--PIS 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~--~~~----~--~~~ 212 (343)
.|+||+++|.|+|+++| +++.|||++|||+|++. ..+|.+|+++++|+++||.||+ | ... . ...
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 58999999999999998 27789999999999853 4569999999999999988886 3 110 0 000
Q ss_pred -cc-cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 213 -DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 213 -~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
.. .+..|+.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999998 89999999999876 4799999999854
No 115
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.56 E-value=1.5e-14 Score=148.13 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=91.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccccc-----ccc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQF 215 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-----~~~ 215 (343)
.|+||+++|.|+|+++|. + +++|+++|||+|++ ...+|.+|.++++|+++||.|| +|++..... ..+
T Consensus 402 ~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 589999999999999984 3 45688999999984 5577999999999987776666 577643211 123
Q ss_pred CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
...|+.++|++||+++++|+ +++++..++++|++. .++|+|||+.+.
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 521 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLP 521 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECC
Confidence 45789999999999999999 899999999988862 356899999873
No 116
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.56 E-value=3.8e-14 Score=134.55 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=98.0
Q ss_pred ccccCchHHHHHHHHhcccccCCCeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
+++|.++|+|+|+++|. +++.|||+.|||++ +.| ...|.+|+++++|+++||.||+ |++...+.
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 67899999999999984 78999999999997 454 3459999999999988877775 66543211
Q ss_pred --------cccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe--cCCCCCCCCCCCCC
Q 019322 213 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY--RVGHHTTSDDSTKY 281 (343)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~--R~~gHs~~dd~~~Y 281 (343)
......|+.++|+++|+.++ ++.-.++.++.+++++|++ .++|+||++.+. -.++.. ...
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~~-----~~~ 214 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGRN-----TST 214 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCcC-----Ccc
Confidence 00123589999999999986 3344489999999999986 479999998652 122221 224
Q ss_pred CCHHHHHHHH
Q 019322 282 RPVDEIEWWR 291 (343)
Q Consensus 282 r~~~e~~~~~ 291 (343)
+++.++.+|-
T Consensus 215 ~~~~~~~~~~ 224 (301)
T PRK05778 215 KSPAYMREYY 224 (301)
T ss_pred cCHHHHHHHH
Confidence 5666666663
No 117
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.56 E-value=1.8e-14 Score=148.22 Aligned_cols=115 Identities=21% Similarity=0.326 Sum_probs=93.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccc---------cc
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.++++|+++||.||+ |++.. ..
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~-~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-L-QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 478999999999998884 67899999999999864 3 469999999999988888886 44321 00
Q ss_pred -c-cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 -S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 -~-~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ...+..|+.++|++||+++++|+ +++++.++++++++ .++|+|||+++.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11124689999999999999999 78999999998886 3799999999964
No 118
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.56 E-value=2.7e-14 Score=146.72 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=93.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999985 78899999999999854 466999999999987776666 56653210
Q ss_pred c-ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ..+ ...|+.++|++||+++.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 111 34689999999999999998 89999999998876 4799999999965
No 119
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.54 E-value=2e-14 Score=149.52 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=93.0
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++ ...+|.+|++++||+++||.|| +|++....
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQM--TNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhc--cHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999999884 7889999999999984 4577999999999987776666 57653210
Q ss_pred c-ccc-----CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S-DQF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~-~~~-----~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ... ...|+.++|++||+++.+|+ +++++..++++|++. .++|+|||+.+.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 0 011 12589999999999999998 899999999998863 2689999999965
No 120
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.53 E-value=6.3e-14 Score=145.12 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=93.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|+++++|+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 479999999999999984 67899999999999854 4669999999999877777664 6653211
Q ss_pred c-ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ... ...|+.++|++||+++++|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 1 111 24689999999999999998 89999999998875 4799999999854
No 121
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.52 E-value=4.9e-14 Score=145.31 Aligned_cols=114 Identities=24% Similarity=0.373 Sum_probs=90.7
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccc---------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (343)
.|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 589999999999998884 78899999999999853 467999999999987776666 57653211
Q ss_pred c-ccc-CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
. ..+ ...|+.++|++||+++.+|+ ++.++.++++ +.. .++|+|||+.+.+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 112 34689999999999999998 8999988886 332 3799999999965
No 122
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.52 E-value=2.7e-14 Score=147.29 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=89.6
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccc----c----
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~----~---- 212 (343)
.+++|+++|.|+|+++| ++++|||++|||+|++. ..+|.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999987 37789999999999864 3569999999999877776665 6642111 0
Q ss_pred ----cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
......|+.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 11234689999999999999998 89999999999875 47999999987
No 123
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.50 E-value=1e-13 Score=130.17 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=89.4
Q ss_pred ccccCchHHHHHHHHhcccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc--------
Q 019322 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (343)
+.+|.++|.|+|+++| ++++.||++.|||++. .| ...|.+|+++++|+++||.||+ |++...+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCc
Confidence 4589999999999887 4789999999999986 22 3559999999999988888885 55432111
Q ss_pred --------cccCCccHHHhHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 213 --------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
......|+.++|+++|++++.. .-.++.++.+++++|++. +||+|||+.+
T Consensus 134 ~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~----~Gp~lIeV~~ 192 (280)
T PRK11869 134 KTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH----KGLAIVDIFQ 192 (280)
T ss_pred ccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC----CCCEEEEEEC
Confidence 0112358999999999998873 244999999999999974 8999999976
No 124
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.48 E-value=3.3e-13 Score=126.82 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=90.2
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCcc-ccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccccc-----
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----- 214 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~----- 214 (343)
.+.+|.++|+|+|+++|. |+..||+++||| +|..|. ..|.+|+++++|+++||.||+ |++...+...
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 577899999999999984 789999999999 688764 559999999999988888774 5554311110
Q ss_pred -----c------CCccHHHhHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 215 -----F------RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 215 -----~------~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
. ...|+.++|+++|++.+. ....++.++.+++++|++ .+||.+|++..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 012899999999997554 455699999999999987 48999999875
No 125
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.47 E-value=3.5e-13 Score=127.32 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=88.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccc-cCcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------ 213 (343)
.+++|.++|.|+|+++|. |++.||++.|||+ |+.|. ..|.+|+++++|+++||.||+ |++...+..
T Consensus 68 ~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 368899999999999984 7899999999996 77664 459999999999988877774 655332110
Q ss_pred ----------ccCCccHHHhHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 ----------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 ----------~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.....++.++|.++|...+. +.-.++.++.+++++|++ .++|+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00124788999999998763 344589999999999986 47999999975
No 126
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.45 E-value=3.9e-13 Score=126.73 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=85.1
Q ss_pred ccccCchHHHHHHHHhcccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccccc------
Q 019322 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ------ 214 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~------ 214 (343)
+.+|.++|+|+|+++|. +++.|||+.|||++. +| ...|.+|+++++|+++||.||+ |++...+...
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 45799999999998884 789999999999973 54 4559999999999988888774 5554321110
Q ss_pred ------------cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 215 ------------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 215 ------------~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
..+.++..+|.++|+.+...- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012346677888887766522 489999999999987 48999999975
No 127
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.44 E-value=9.6e-13 Score=129.83 Aligned_cols=163 Identities=21% Similarity=0.282 Sum_probs=116.4
Q ss_pred chhhHHHHHHHhcCCCCcEEEccCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcc--cccccccCc
Q 019322 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF--TVSSTIATQ 148 (343)
Q Consensus 71 ~G~Ea~~v~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~--~~~g~lG~~ 148 (343)
+=|+-..-.+...|+++|+++.- .|. .+|| +..+ .......+. +-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGt-------------S~FG-------~~~~---~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGT-------------SFFG-------ALDI---RLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---ccc-------------cccc-------ceee---ecCCCCeEEcccchhhcccc
Confidence 55677777788889999988852 111 2333 1111 111122222 348999999
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCcccccccc------ccCCccHH
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD------QFRSDGAV 221 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~------~~~~~~~~ 221 (343)
+|.|+|+++|. ++++++.|+||||+| ..-+++.+..+|+| |+|||++|++|.|..-... .....++.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999997 679999999999998 45677999999999 8999999999998765554 12346788
Q ss_pred HhHhhcCceEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 222 VKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 222 ~~a~a~G~~~~~V--dG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
++.++||..-... .-...+.+..++..+.+. .+++.+|||++.+
T Consensus 491 ~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRATTGEELALALDVAFAN---NDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEeecChHHHHHHHHHHhcC---CCceEEEEEecCc
Confidence 9999998643221 222566777777776653 5689999999855
No 128
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.40 E-value=7.7e-13 Score=125.89 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=115.1
Q ss_pred cccccccchhhHHHHHHHhcCCC--CcEEEccCcchHHHHHc-CCCHHHHHHHhhcCCC-----------CCCCCCCccc
Q 019322 64 ISFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGVLLWR-GFSMQEFANQCFGNKA-----------DYGKGRQMPI 129 (343)
Q Consensus 64 i~~~~~~~G~Ea~~v~~~~~l~~--~D~v~~~yR~~~~~l~~-G~~~~~~~~~~~g~~~-----------~~~~G~~~~~ 129 (343)
+++|.++.|+-.+.+++...++. .|+++..-.||+..... ..-++.-+.+++...+ .++--.++++
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipS 126 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPS 126 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-S
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 47899999999999999988874 46777777777433211 1112222223322211 1223457899
Q ss_pred ccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC----CEEEEEEcCCC
Q 019322 130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA----PVIFICRNNGW 205 (343)
Q Consensus 130 h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L----pvi~vv~nN~~ 205 (343)
|.+...+|.+.-.|-||++++.|.|+++- +|+.+++|++|||++.+|....+...-.-++- -|+-|+.=|+|
T Consensus 127 H~~p~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~ 202 (379)
T PF09364_consen 127 HVSPETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGY 202 (379)
T ss_dssp SS-TTSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SB
T ss_pred ccCcCCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCc
Confidence 99888889888899999999999999875 69999999999999998864433322222222 27888889999
Q ss_pred cccccccc-ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHH
Q 019322 206 AISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (343)
Q Consensus 206 ~~~~~~~~-~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~ 250 (343)
.|+.++-- ..+...+.+.+++||+..+.|+|.|+.++...+..++
T Consensus 203 KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 203 KISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp SSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred cccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 99987653 3445679999999999999999999998877665543
No 129
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.38 E-value=3.1e-12 Score=132.67 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=90.8
Q ss_pred ccccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCcccccccc----
Q 019322 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD---- 213 (343)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~---- 213 (343)
....++||+++|.|+|+++|. ++++||+++|||+|.... ..+|.+|.++++|+++||.|| .|++...+..
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~ 473 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTG-IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTG 473 (595)
T ss_pred cceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCC
Confidence 334688999999999999884 788999999999997421 346889999999987777766 5776542211
Q ss_pred ------ccCCccHHHhHhhcCceEEEEeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 ------QFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 ------~~~~~~~~~~a~a~G~~~~~VdG-~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.....|+.+++++||++..+|.. .+..++.++++++++ .++|++|++..
T Consensus 474 ~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 474 VTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 11246899999999999999863 345667888888876 47899999854
No 130
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.33 E-value=1.1e-10 Score=110.56 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=98.5
Q ss_pred CcccccccccCchHHHHHHHHhcccccCCCeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc-
Q 019322 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD- 213 (343)
Q Consensus 137 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~- 213 (343)
+.....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..|. ++|.-|...+.|+++||.||. |++++.+..
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~--~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF--QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH--HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 33445788999999999999998776677899999999998 4553 779999999999999999996 444322111
Q ss_pred --------------------ccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 214 --------------------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 214 --------------------~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.....|+..++.++|++.+ +++-.++.++.+++++|.+ .+||.+|++.+
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1224578899999999776 6677799999999999987 48999999976
No 131
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.29 E-value=8.2e-12 Score=142.13 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=91.9
Q ss_pred ccccccC--chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhC--CCCEEEEEEcCC-Ccccccc----
Q 019322 141 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI---- 211 (343)
Q Consensus 141 ~~g~lG~--~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~nN~-~~~~~~~---- 211 (343)
+.|.+|. ++|.|+|+++|. +++|+|++|||+|++ ...+|.+|+++ ++|+++||.||+ |++....
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m--~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~ 829 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLH--DTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAK 829 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHh--hhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCC
Confidence 4588988 599999999884 678999999999974 45679999884 999977777665 5543210
Q ss_pred --c-----c---ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 212 --S-----D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 212 --~-----~---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
. . .....|+.++|++||+++.+|+ +++++..+++++.+ .++|+|||+.|.|.
T Consensus 830 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 830 RTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSID 891 (1655)
T ss_pred CCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecChh
Confidence 0 0 0124689999999999999999 89999999988775 48999999999664
No 132
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.22 E-value=1.4e-10 Score=113.66 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=92.4
Q ss_pred cccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-C-Ccccccccc----
Q 019322 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPISD---- 213 (343)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~-~~~~~~~~~---- 213 (343)
++.|+||-|++.|+++|++. |++.|+|+-||++|.-. .+ ++.++.+||||||.||.|| + |+.+.....
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aM-E~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AM-ELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hh-hHHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 45788888888888888875 99999999999999532 22 3889999999998887765 4 444332211
Q ss_pred -----------ccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 214 -----------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 214 -----------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
-..+.++.+.+++||.+++.|+ .++++.+++++++.. +++|++|.+..-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~---~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD---TDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc---CCCCeEEEEEecc
Confidence 1234578899999999999999 999999999988864 6799999998744
No 133
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.04 E-value=5.6e-09 Score=102.00 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=91.9
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC-CCccccc---------
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP--------- 210 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~--------- 210 (343)
..+.||+-+.-++|+- +..+++-|++++||||+. +.+.+|.++..++..+++++.+| +|+-..+
T Consensus 442 gfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred cccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 3567888777777764 557899999999999998 68888999999999886665555 6653211
Q ss_pred ---------cccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 211 ---------ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 211 ---------~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
.+......|+++.|++||..+.+|. +..++..|+++|.+ ..++++|+++|.+.
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P~ 577 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDPK 577 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCCc
Confidence 0122455689999999999999998 89998888887776 58999999998653
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.04 E-value=1.9e-09 Score=106.50 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=90.5
Q ss_pred cccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC-CEEEEEEcCCCcccccccc----c
Q 019322 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD----Q 214 (343)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~----~ 214 (343)
...|++|+.+|.++|+++|. +++++++|+|||+|++ .-+.+.++.+|+| |+||+++|++|.|...... .
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql--TvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL--TVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCcccee--eHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 34789999999999999996 5689999999999985 4456999999999 6899999999988765554 2
Q ss_pred cCCccHHHhHhhcCceE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 215 FRSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 215 ~~~~~~~~~a~a~G~~~---~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
..+.++.++.++||..- ....-..-.++..+.+.+... +.++|.+|||+.
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l 538 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVIL 538 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEec
Confidence 23367889999997533 222222445667777776632 457899999987
No 135
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.01 E-value=5.6e-10 Score=107.84 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=92.5
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCC-ccccccc--------
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS-------- 212 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~-------- 212 (343)
.|.||.|+|.|+|+..| +|+..|+-+-||++|.+ .-.+|.++.+.++||-++|.||.- ++-+.-.
T Consensus 523 LGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~M--t~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~ry 596 (675)
T KOG4166|consen 523 LGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIM--TVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARY 596 (675)
T ss_pred ccccccCcchhhccccc----CcccEEEeccCCceeee--ehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhh
Confidence 56899999999999887 49999999999999974 345599999999999888888852 3322110
Q ss_pred --cccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
....++++.++|.++|++..+|. .-+++.+.+++.+. .+||+|+|+.+...
T Consensus 597 sHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 597 SHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred ccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 01134789999999999999998 77888888888776 68999999988543
No 136
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.00 E-value=1e-09 Score=103.32 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=103.6
Q ss_pred cccccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCc---------cccc
Q 019322 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA---------ISTP 210 (343)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~---------~~~~ 210 (343)
+..|++|+.+|.|+|...| .|++.+|++.||-.|+ .+.|.|...+++|+|.|+|+.||.|- ++..
T Consensus 416 gqagplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~md 489 (592)
T COG3960 416 GQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMD 489 (592)
T ss_pred CccCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCcc
Confidence 4478999999999998665 5899999999999998 67899999999999999999999762 1111
Q ss_pred cccc------------cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 211 ISDQ------------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 211 ~~~~------------~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
...+ --..|..+.++++|++.++|- +|.++..++.+|.....+..-|++||+..-|...-|.+
T Consensus 490 y~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 490 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred ceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 1101 012356678999999999998 89999999999988877788999999999887765554
No 137
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.2e-08 Score=102.10 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--------HHHH------HHHHhcCCcccccccchhhHHHHHHHhcCCCCc--EEEccC
Q 019322 31 VKVSEGVAIKMYNDMVTLQTM--------DTIF------YEAQRQGRISFYLTTSGEEAINIASAAAIKNDD--FVVPQY 94 (343)
Q Consensus 31 ~~~s~~~~~~~~~~m~~~R~~--------e~~~------~~~~~~g~i~~~~~~~G~Ea~~v~~~~~l~~~D--~v~~~y 94 (343)
..++.++|.++++.--.+-.+ |... .+..+...++++.++.|+--+.+++...++..| +++..-
T Consensus 13 ~~~~~e~L~~~~~ywRA~~yL~~g~i~l~dnpl~~~pl~~e~lK~r~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~G 92 (793)
T COG3957 13 IPLTGEELADVDAYWRAANYLAAGQIYLSDNPLLREPLQAEHLKARLLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMG 92 (793)
T ss_pred CcCChHHHHHHHHHHHHhhhhhhcceeeecCCcccccCChhhccchhcccccCCCCchhhhhhhhHHHHhhCcceEEEec
Confidence 357778888776654222111 1111 122233345788899999999999888877644 444444
Q ss_pred cchHHHHH------cCC----------C---HHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHH
Q 019322 95 REPGVLLW------RGF----------S---MQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGA 155 (343)
Q Consensus 95 R~~~~~l~------~G~----------~---~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~ 155 (343)
.||+.... -|. + +..++.+|. --.++++|.....+|.+...|.||+++..|.|+
T Consensus 93 pGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs-------~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gA 165 (793)
T COG3957 93 PGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS-------FPGGIGSHVAPETPGSIHEGGELGYALSHAYGA 165 (793)
T ss_pred CCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------CCCCcccccCCCCCCccCcCcchhHHHHHHHHh
Confidence 45532211 121 0 223444443 245688999888899998899999999999998
Q ss_pred HHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCC----CEEEEEEcCCCccccccccc-cCCccHHHhHhhcCce
Q 019322 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA----PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVR 230 (343)
Q Consensus 156 A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L----pvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~G~~ 230 (343)
|+= .|+.++.|++|||+..+|....+..--.-++- .++-|+.=|+|.|+-++.-. .+..++.+.+++||+.
T Consensus 166 a~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~ 241 (793)
T COG3957 166 AFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYE 241 (793)
T ss_pred hcC----CCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCc
Confidence 864 69999999999998776653221111111221 37888889999998876543 3456789999999999
Q ss_pred EEEEeCCCHHHHHHHH
Q 019322 231 SIRVDGNDALAIYSAV 246 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~ 246 (343)
-+.|+|+|+.++.+.+
T Consensus 242 p~~veg~d~~d~hq~m 257 (793)
T COG3957 242 PVFVEGADPADMHQLM 257 (793)
T ss_pred eeEecCCChHHhhhhH
Confidence 9999999998844433
No 138
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.61 E-value=1.3e-06 Score=82.89 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=87.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCcc-ccCcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccccc-----
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----- 214 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~----- 214 (343)
.+.-|-..++|.|+.+|. ++..||++.||| ++..|.- .+.-+.+.+.+|++||.||. |+.++-+...
T Consensus 69 hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~--~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGN--HLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhH--HHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 456788899999998886 566899999999 4467753 37788899999999988885 5443222111
Q ss_pred -----------c-CCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 215 -----------F-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 215 -----------~-~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
. ..-|+..++.++|.+.+ ++---++.++.+.+++|.++ +||.||++.+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~s 203 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLS 203 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEec
Confidence 1 22378889999998654 56556799999999999985 6999999976
No 139
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.03 E-value=0.00023 Score=69.20 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=70.2
Q ss_pred CCeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc----------------cccCCccHHHhHhh
Q 019322 165 DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------------DQFRSDGAVVKGRA 226 (343)
Q Consensus 165 ~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~----------------~~~~~~~~~~~a~a 226 (343)
+..||++.|||.. ..|. ..+.-|...+.+|++||.||. |+.++-+. ......|+..++.+
T Consensus 151 ~~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a 228 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMS 228 (365)
T ss_pred ccceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHH
Confidence 3589999999965 6664 336667777888988887774 55542111 11223478889999
Q ss_pred cCceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 227 YGVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 227 ~G~~~~-~Vd-G~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
+|.+.+ ++. |.++.++.+++++|.++ +||.+|++.+.
T Consensus 229 ~g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~sP 267 (365)
T cd03377 229 YGNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSP 267 (365)
T ss_pred cCCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEcc
Confidence 998765 443 35899999999999975 89999999773
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.97 E-value=3.2e-05 Score=78.91 Aligned_cols=112 Identities=22% Similarity=0.213 Sum_probs=83.8
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCCC-ccccccccc-----
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQ----- 214 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~~----- 214 (343)
+-.+|.++++|-|++++. .+++|+++|||.|. .|. .++..|...+.|++++|.+|.+ ++++.+...
T Consensus 427 t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~ 499 (640)
T COG4231 427 TTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVA 499 (640)
T ss_pred hhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccc
Confidence 456788888888888774 38899999999994 554 3477888888999888888876 344332211
Q ss_pred -----cCCccHHHhHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 215 -----FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 215 -----~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
....++.+..++.|+..+. ||=.|..++.+++++|++. .+|.+|.+
T Consensus 500 ~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~----~gpsViia 551 (640)
T COG4231 500 AEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV----PGPSVIIA 551 (640)
T ss_pred cCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC----CCceEEEE
Confidence 2234678899999997765 5668888988899888874 78999854
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.79 E-value=7.9e-05 Score=75.18 Aligned_cols=108 Identities=21% Similarity=0.160 Sum_probs=76.1
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCE-EEEEEcCCCccccc--c------cc-c---
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTP--I------SD-Q--- 214 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpv-i~vv~nN~~~~~~~--~------~~-~--- 214 (343)
.++-|+|++.|. .+.+|.++||=||-.-. -+|-+......|+ |+|++|||-+|-.- + .+ .
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 377899999874 45699999999993211 1244555566675 66677777666321 1 11 1
Q ss_pred cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 215 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 215 ~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
-..-|++..|+.||+...+++ .+.++..++..+.. ..|-++||++|.|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 123489999999999999988 78888888877765 3678999999976
No 142
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.44 E-value=0.0011 Score=74.03 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=100.8
Q ss_pred CeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcCC-Cccccccc----------------cccCCccHHHhHhhc
Q 019322 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------------DQFRSDGAVVKGRAY 227 (343)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~----------------~~~~~~~~~~~a~a~ 227 (343)
..+|++.|||.. ..|. ..+.-+...+.+|.+||.||. |+.++-+. ......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999955 5554 336777788899888877774 55432111 112334788899999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCCCC----------------CCC--CH--H
Q 019322 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST----------------KYR--PV--D 285 (343)
Q Consensus 228 G~~~~-~Vd-G~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd~~----------------~Yr--~~--~ 285 (343)
|.+++ ++. |.++.++.+++++|.++ +||.+|++.+.=. .|.-.+++. .|| |. +
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~----~G~s~i~~~~pC~-~~g~~~~~~~~~~~~k~av~~g~wply~~~p~~~~ 1104 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY----DGPSIVIAYSPCI-NHGIKKGMGKSQAEQKTAVESGYWPLYRYNPRLAE 1104 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC----CCCEEEEEECCCc-ccCcCCCcchHHHHHHHHHHcCCceEEEecCcccc
Confidence 98655 554 56899999999999874 8999999977322 232211111 122 11 0
Q ss_pred HHH-HHH-hCCCcHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHHHHHhh
Q 019322 286 EIE-WWR-TTQDPVTRFRKWIESNGWWNG------DIESELRSSVRKQVILVSLTISK 335 (343)
Q Consensus 286 e~~-~~~-~~~dPi~~~~~~L~~~g~~~~------~~~~~i~~~~~~~v~~a~~~a~~ 335 (343)
+-+ .+. ..+-|-..++++|..+|-++. ++-+++.+++++++++-++..++
T Consensus 1105 ~g~~~~~l~~~~~~~~~~~~l~~~~r~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 1162 (1165)
T TIGR02176 1105 QGKNPFQLDSKEPDSSVAEFLNGEVRFASLKKSFPDDAERLFNKAAHEAKRRFKEYEH 1162 (1165)
T ss_pred cCCCCeeecCCCCCcCHHHHHHhchHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 010 012234457777777764432 45567777788888877766554
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.17 E-value=0.0026 Score=70.50 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=77.4
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCCC-cccccccc--ccCC
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD--QFRS 217 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~--~~~~ 217 (343)
...||...+.++|++.+. .++.+|+++|||.|. .|.. +|.-|...+.|++++|.+|.. ++++.+.. ..+.
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 457888888888988773 346799999999994 5553 677788888999888887765 55554432 2222
Q ss_pred ccHHHhHhhcCceEEEEeCCCHHH-----HH--------HHHHHHHHHhhccCCcEEEEE
Q 019322 218 DGAVVKGRAYGVRSIRVDGNDALA-----IY--------SAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~d~~~-----v~--------~a~~~a~~~~r~~~gP~lIe~ 264 (343)
+.+....++.|+.-+.|-..||.. +. +.+....+..|+..||++|..
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 334447789999877765446554 22 323333333334678988854
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.11 E-value=0.0028 Score=70.04 Aligned_cols=118 Identities=13% Similarity=0.042 Sum_probs=82.3
Q ss_pred ccccccCchHHHHHHHHhcccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCC-Ccccccccc--ccC
Q 019322 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFR 216 (343)
Q Consensus 141 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~--~~~ 216 (343)
+...||...+.++|.+.+. .++.+|+++|||.|. .|. -++.-|...+.|++++|.+|. -++++.+.. ..+
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 3557898888999988752 346799999999994 554 347777788889988877775 466554432 235
Q ss_pred CccHHHhHhhcCceEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEE
Q 019322 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~d~~~v~~a--------------~~~a~~~~r~~~gP~lIe~ 264 (343)
..++....++.|+.-+.|-..||...... ++...+..|+..|+++|..
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 56788999999998777655567665433 3333344445788988854
No 145
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.03 E-value=0.0096 Score=50.32 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=67.5
Q ss_pred chHHHHHHHHhcccccCCCeEEEEe-CccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (343)
...+|.|.+.+- . ..++++. |.|..+ ..+.+..|...++|+|+|+...+..... .......+....++.
T Consensus 47 a~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~ 116 (154)
T cd06586 47 AAGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRS 116 (154)
T ss_pred HHHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHH
Confidence 355677777652 3 3333434 888763 5577778888899999999766543211 111222344555666
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
+..-...+. ++.+..+.+.+|+..+....||++|++
T Consensus 117 ~~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 117 IPEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hhheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 655555554 777888888888887777789999975
No 146
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.97 E-value=0.0095 Score=50.78 Aligned_cols=106 Identities=21% Similarity=0.141 Sum_probs=69.0
Q ss_pred chHHHHHHHHhcccccCCCeEEEEe-CccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (343)
...+|.|.+++. .+..+++.. |=|.++ ...++..|...++|+|+|.-+....-..... ....|..+.++.
T Consensus 46 A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~ 116 (155)
T cd07035 46 AVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRP 116 (155)
T ss_pred HHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHH
Confidence 345666666653 222233333 555553 5678888999999999998765433221111 112344555665
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 264 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~ 264 (343)
+--...+++ +++++...+.+|++.+... ++|+.|++
T Consensus 117 ~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 655577776 8999999999999988776 78999986
No 147
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.82 E-value=0.022 Score=49.55 Aligned_cols=105 Identities=16% Similarity=0.051 Sum_probs=73.0
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|+|+|.-+....... ...+...|..+.++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhc
Confidence 3455666553 3334556666777775 4466778888999999998665433211 111222366777887777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
...+++ +++++.+++++|++.++...||+.|++
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 788888 899999999999988877789999987
No 148
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.81 E-value=0.027 Score=48.74 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=70.9
Q ss_pred cCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHH-hCCCCEEEEEEcCCC-ccccccccccCCccH-HH
Q 019322 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGW-AISTPISDQFRSDGA-VV 222 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~-~~ 222 (343)
+.+..+|.|..++ .++.++|+.+=|- |...-+|..|. ..++|+|+|+-.-+. +-..+ .+.....+ ..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~--~q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEKIP--AQIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCc--cccchhhhhHH
Confidence 4556667777654 3456688777773 34666777888 889999999954443 11100 11111111 12
Q ss_pred hHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 223 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
.....+++...++ +++++ .++.+|++.+..+++|+.|-+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 3355677888887 79999 9999999999888999998763
No 149
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.72 E-value=0.014 Score=50.08 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=67.6
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
...+|-|.+.+. . +.+++..|-|..+ ....|..|...+.|+|+|+-+................+....++.
T Consensus 53 A~~~A~g~~r~~----~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 53 AAEAAIGASAAG----A-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHhhC----C-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-
Confidence 344555665542 2 2666777888775 456677788888999999876543221110101111122233333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.+.+.++. +++++.+.+++|++.++.+++|++|..
T Consensus 124 ~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 46677776 899999999999999988889999864
No 150
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.49 E-value=0.024 Score=49.46 Aligned_cols=109 Identities=21% Similarity=0.095 Sum_probs=72.4
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
...+|.|.+++. +.-.++++..|=|.++ ..-++..|...+.|+|+|+-+-..........+ ...|....++.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhccc
Confidence 345666776653 2223344444556664 345566788889999999887654443311111 133677788888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEE
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEAL 265 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~-r~~~gP~lIe~~ 265 (343)
.-...++. +++++..++++|++.+ ....+|+.|++-
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 88888887 8888888999998888 667899999874
No 151
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.47 E-value=0.017 Score=64.03 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=77.1
Q ss_pred cccccCchHHHHHHHHhcccccCCCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCCC-cccccccc--ccCC
Q 019322 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD--QFRS 217 (343)
Q Consensus 142 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~--~~~~ 217 (343)
...||.....++|.+.+. .++.+|+++|||.|. .|. -++.-|...+.|++++|.+|.. ++++.+.. ..+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 457888888888888663 346799999999994 454 3477777888999888777764 56554432 2333
Q ss_pred ccHHHhHhhcCceEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 019322 218 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~d~~~v~--------------~a~~~a~~~~r~~~gP~lIe~ 264 (343)
+.++...++.|+.-+.|--.||..+. +.+....+..|...|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 44555779999977766433554443 334433344445678888853
No 152
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.39 E-value=0.043 Score=47.55 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=70.3
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccc-c--cccc--C-CccHH
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-I--SDQF--R-SDGAV 221 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~-~--~~~~--~-~~~~~ 221 (343)
..-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|+|+|+-+........ . .... . ..|..
T Consensus 47 A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (162)
T cd07038 47 AGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFL 119 (162)
T ss_pred HHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHH
Confidence 344566666653 122344444667665 45667788888999999986654221111 0 0001 0 11456
Q ss_pred HhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 222 ~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
++++.+--...+|. +++++..++++|+..+..+++|+.|++
T Consensus 120 ~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 120 KMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 77777777778887 888999999999998888889999986
No 153
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.60 E-value=0.11 Score=50.92 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=79.1
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHH-H-hHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-V-KGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~-~a~ 225 (343)
.+..|+|+++| +.++++.+-++.+. ..+|.+.+|+-..+|+++++.+-. +-++.. .+....|+. . +..
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~~ 129 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKGG 129 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhcC
Confidence 47788899887 45688888888886 689999999999999988887754 222211 111112221 1 111
Q ss_pred ---hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 226 ---AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 226 ---a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
-++|+++.. .|+.++++...+|++.+.+..-|+++-..++ . .|+..
T Consensus 130 ghgd~~~~vl~p--~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~-l-sh~~~ 178 (352)
T PRK07119 130 GHGDYRLIVLAP--SSVQEMVDLTMLAFDLADKYRNPVMVLGDGV-L-GQMME 178 (352)
T ss_pred CCCCcceEEEeC--CCHHHHHHHHHHHHHHHHHhCCCEEEEcchh-h-hCcee
Confidence 234665554 4999999999999988888889999988873 3 67643
No 154
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.13 E-value=0.14 Score=44.43 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=62.8
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|+-+-...... ...+...|....++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRG--TGANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcC--CCCCcccchhhhcccee
Confidence 34556666543 3334455555777775 3456778888899999998654322211 11122234445555554
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhccC-CcEEEEE
Q 019322 229 VRSIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEA 264 (343)
Q Consensus 229 ~~~~~VdG~d~~~------v~~a~~~a~~~~r~~~-gP~lIe~ 264 (343)
-...+|. ++++ +...+++|+..++.+. ||++|++
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 4455554 4444 6777777777776654 8999986
No 155
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.05 E-value=0.2 Score=49.55 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=76.7
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHH-HhHh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGR 225 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~~a~ 225 (343)
..+.+|+|+++| +.++++.+-=+++. ..+|.+.+++-..+|+|+++.+.... ++.........|+. .+..
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D~~~~~~~ 129 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGP-STGQPTKPAQGDMMQARWG 129 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCC-CCCCCCCcCcHHHHHHhcc
Confidence 347788888887 34556655444554 57899999999999998888775421 11111111122332 2333
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 226 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 226 a~G-~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
++| .+.+.+.-.|+.++++....|++.+.+.+-|++|-...+ -+|+..
T Consensus 130 ~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 130 THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 333 333444555999999999999988888889999988873 567653
No 156
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.92 E-value=0.15 Score=50.11 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=73.4
Q ss_pred ccccCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHH-HH--HHhCCCCEEEEEEcCCCcccc-ccccccCCc
Q 019322 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NF--SAVTEAPVIFICRNNGWAIST-PISDQFRSD 218 (343)
Q Consensus 143 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~--A~~~~Lpvi~vv~nN~~~~~~-~~~~~~~~~ 218 (343)
..=|.++++|.|+.+|- +++.++++=--++. ..--.| .+ ...|++|++++|-.-+.--.. .......+.
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLG--NAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGR 105 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchh--hhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhH
Confidence 34577889999998872 34455554333332 111112 33 466899999999776643211 111111233
Q ss_pred cHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
-..++.+++|++...++ .+.++...++.+|.+++.+.++|+.|-+.
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34578899999999995 25667788888888888888999888663
No 157
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.76 E-value=0.36 Score=41.45 Aligned_cols=101 Identities=22% Similarity=0.201 Sum_probs=62.4
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHH-HHHhCCCCEEEEEEcCCCcc--ccccccccCCccHHHh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVK 223 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~ 223 (343)
+.+++|.|+|+. + .+++++.. ..|.. ..++.+. .++.+++|+++++...+++. .+++... ..+++ .
T Consensus 50 ~~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~a-~ 118 (156)
T cd07033 50 NMVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDIA-L 118 (156)
T ss_pred HHHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHHH-H
Confidence 345677777764 2 34444444 45532 4455555 88899999999998776654 3333321 12222 2
Q ss_pred Hhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 224 GRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 224 a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
...+ |+.++.- .|+.++...++.|++. ++|++|-.
T Consensus 119 ~~~iPg~~v~~P--s~~~~~~~ll~~a~~~----~~P~~irl 154 (156)
T cd07033 119 LRAIPNMTVLRP--ADANETAAALEAALEY----DGPVYIRL 154 (156)
T ss_pred hcCCCCCEEEec--CCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 3333 5555544 4899999999999873 67998854
No 158
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=94.56 E-value=0.15 Score=46.87 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=68.9
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccc-cccccccCCccHHHhHhhc
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~-~~~~~~~~~~~~~~~a~a~ 227 (343)
+..++|++++ +.++++.+-=.+++ ...|.|.+++-.++|+|+++.|-.-... .++.. ...|+. .+..+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~~-~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDLM-AARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHHH-HTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHHH-HHHhc
Confidence 6778888886 33445544334443 4668899999999999888877543222 11111 112222 23367
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
||.++... |+.+.++....|.+.+.+..-|+++-...++. .|+..
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~e 162 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSRE 162 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-EE
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCccc
Confidence 88877766 99999999999998888889999998888664 36543
No 159
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.41 E-value=0.41 Score=47.53 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=77.2
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
.+..|+|+++| +.++++.+-=++++ .++|.|.+|+-..+|+|+++.|-... ++........|+.. +..-
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~-~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLA-QRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHH-Hhhc
Confidence 47788899887 34566666555665 68899999999999988887654433 22221111223331 2223
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
||-++.. .|+.+.++....|++.+.+..-|+++-...|+.. |...
T Consensus 130 g~i~~~~--~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~~ 174 (390)
T PRK08366 130 GWMQFYA--ENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTYD 174 (390)
T ss_pred CEEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-cccc
Confidence 6644443 5899999999999988888899999998887765 4443
No 160
>PRK08611 pyruvate oxidase; Provisional
Probab=94.37 E-value=0.41 Score=49.87 Aligned_cols=107 Identities=14% Similarity=0.040 Sum_probs=72.5
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+...|..+.++.+-
T Consensus 56 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKLT---GKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHHh---CCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhccc
Confidence 34555665442 3344556666888886 34567788888999999986554332211 1122235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
-...+|+ +++++..++.+|+..+..+.||+.|++-
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 6666776 8999999999998888778899999873
No 161
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.34 E-value=0.38 Score=49.81 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.............+...|....++.+--
T Consensus 54 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk 127 (554)
T TIGR03254 54 YAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAK 127 (554)
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhe
Confidence 3455655543 3334566666888886 345677888889999999865443211001111222356677777777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...+|+ +++++.+.+.+|++.+..+ .||+.|++-
T Consensus 128 ~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 128 AAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 788888 8999999999998887765 488999874
No 162
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.31 E-value=0.37 Score=49.96 Aligned_cols=106 Identities=21% Similarity=0.170 Sum_probs=75.4
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|.+ .++-.+|++..|=|+++ ....|..|..-..|+|+|.-.=. .+....+.+...|...+++.+-
T Consensus 52 a~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~~l~~p~t 123 (550)
T COG0028 52 AFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQVGLFRPIT 123 (550)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchhhHhhhhh
Confidence 3455566544 45667899999999996 45568888888999999875211 1111112222336777777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEA 264 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~ 264 (343)
-..+.|. +++++.+.+++|++.+..++ ||++|++
T Consensus 124 k~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 124 KYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 6777888 89999999999999988776 9999976
No 163
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.23 E-value=0.43 Score=49.78 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-..... ....+...|....++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~--~~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTI--GQGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccC--CCCCCcccchhhhhhhhee
Confidence 4455665543 2334566666888886 445677788889999999832211100 0111112245566666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
...+|+ +++++...+.+|+..++.+.||+.|++-
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 566666 8999999999999888888999999884
No 164
>PRK07524 hypothetical protein; Provisional
Probab=93.91 E-value=0.57 Score=48.21 Aligned_cols=109 Identities=17% Similarity=0.041 Sum_probs=72.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccc-cCCccHHHhHhhc
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAY 227 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~ 227 (343)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-............. ....|...+++.+
T Consensus 52 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARVS---GKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 44555665543 3334566666888886 446677888899999999854432211110001 1113566778877
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
--...+|+ +++++...+.+|+..++.+ .||+.|++-
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 126 AAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred ceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 77777787 8999999999999888866 599999874
No 165
>PRK07064 hypothetical protein; Provisional
Probab=93.88 E-value=0.63 Score=47.98 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=69.9
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccccccccc-CCccHHHhHhhcC
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYG 228 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~-~~~~~~~~a~a~G 228 (343)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-+-.-.........+ ...|..++++.+-
T Consensus 55 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 4566666553 3334566666888886 4466778888899999998642211100000000 1125666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|+ +++++..++.+|++.+..+ .||+.|++-
T Consensus 129 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 129 KAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 5677776 8889998999998887766 699999874
No 166
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.76 E-value=0.63 Score=48.14 Aligned_cols=105 Identities=16% Similarity=0.028 Sum_probs=68.9
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
+|.|.|.+. +.-.++++..|=|.++ ..-++..|-.-+.|+|+|+-.-...... ...+...|....++.+--.
T Consensus 54 mAdgyar~t---gkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKIT---GKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHHh---CCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeE
Confidence 455665542 3344555666888886 4566778888899999998643322111 1112222455666655555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
..+|. +++++..++++|+..+....||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66666 8889999999998888777899999884
No 167
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.72 E-value=0.6 Score=48.59 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=70.1
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... ...+..-|...+++.+--
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccc
Confidence 3555666543 3344556666777775 4566777888999999998543221111 111222355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...+|+ +++++...+.+|+..++.+ .||+.|++-
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 135 WVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 677777 8899999999999888776 489999874
No 168
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.67 E-value=0.63 Score=48.34 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.+.+. +.-.++++..|=|.++ ..-++..|...+.|||+|+-.-...........+...|....++.+--
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhee
Confidence 3455555542 3334555566888886 345677888899999999864332210000111222355567777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...+|+ +++++...+.+|+..+..+ .||+.|++-
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 677777 8999999999998888765 589999874
No 169
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.67 E-value=0.67 Score=48.45 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=70.0
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+.. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ...+...|....++.+--
T Consensus 55 ~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk 127 (588)
T TIGR01504 55 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH--KEDFQAVDIAAIAKPVSK 127 (588)
T ss_pred HHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccCHHHHhhhhce
Confidence 34555554320 2223444455888775 3456777888899999998544332211 111222356677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 266 (343)
...+|. +++++..++++|+..++.+. ||+.|++-.
T Consensus 128 ~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 128 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCc
Confidence 677777 89999999999998887764 899998743
No 170
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.64 E-value=0.55 Score=48.91 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=68.9
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-.... .....+...|...+++.+--
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~--~~~~~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 53 HMADGFARVT---GRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKT--IGLGGFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHHHh---CCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCcccc--CCCCCCcccchhhhhhccee
Confidence 3455555442 3344555666888886 34567788888999999973211110 01111222255566666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
...+|. +++++...+++|++.+..++||+.|++-
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 125 YQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 666676 8899999999999888888899999884
No 171
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.50 E-value=0.61 Score=48.73 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=70.0
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|..-+.|+|+|.-+-....... ..+...|....++.+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 45556665421 2334555566888886 34567778888999999986543322111 11222355667776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
...+|. +++++..++++|++.++.+. ||+.|++-
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 666776 89999999999998887764 89999885
No 172
>PRK08266 hypothetical protein; Provisional
Probab=93.47 E-value=0.72 Score=47.55 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccC-CccHHHhHhhcC
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYG 228 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G 228 (343)
-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|+|+|+-.-..........++. ..|....++.+-
T Consensus 57 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 57 YMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhc
Confidence 3566666553 2233555566888886 44667788888999999985322111000000111 135667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
-...+|+ +++++...+++|+..++.+ .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 6777787 8889999999998887764 5899998854
No 173
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.36 E-value=0.65 Score=48.29 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=72.1
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ...+...|...+++.+--
T Consensus 56 ~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccc
Confidence 3555665542 3345666677888886 3456777888899999998543322111 111222356667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
...+|+ +++++..++++|+..++.+. ||+.|++-
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 128 HSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 677787 89999999999998887774 99999874
No 174
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.20 E-value=0.82 Score=48.03 Aligned_cols=107 Identities=20% Similarity=0.154 Sum_probs=70.0
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-+-..... ....+...|....++.+-
T Consensus 73 a~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 3455566554 23344556666888886 345677888889999999864321110 111122235566666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++..++.+|++.+..+. ||+.|++-
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 5566677 89999999999998888776 99999864
No 175
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.17 E-value=0.77 Score=47.69 Aligned_cols=107 Identities=19% Similarity=0.089 Sum_probs=69.9
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|-..+.|||+|.-.-...... ...+...|...+++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMG--KMAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccC--CCCccccchhhhhhccc
Confidence 34555665542 2333445556888886 4456778888899999997543322111 11122235566777666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++..++.+|++.++.+. ||+.|++-
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 6677776 89999999999998887764 99999874
No 176
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.17 E-value=0.71 Score=48.06 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=71.6
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|... +.-.++++..|=|.++ ..-++..|-..+.|||+|+-.-...... ...+...|...+++.+--
T Consensus 66 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk 137 (570)
T PRK06725 66 HAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVTK 137 (570)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccce
Confidence 3566666542 3334566667888875 3456777778899999998543322111 111222366677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
...+|. +++++.+.+++|+..++.+. ||+.|++-
T Consensus 138 ~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 138 HNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 677787 89999999999998888764 99999874
No 177
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.11 E-value=0.85 Score=47.60 Aligned_cols=107 Identities=21% Similarity=0.139 Sum_probs=70.5
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
..+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|+-.-..... ....+..-|....++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI--GNDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc--CCCCCccccHhhHHhhhc
Confidence 44566666543 3334556666888886 345677888889999999743221111 111112235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|+ +++++..++.+|++.+..+ .||+.|++-
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 6677777 8899999999999888776 489999875
No 178
>PRK08322 acetolactate synthase; Reviewed
Probab=93.10 E-value=0.86 Score=47.00 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=69.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|+|+|.-+-...... ...+...|....++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 34555665542 3334555556888886 4456777888899999998543221111 11122235666676665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|+ +++++...+.+|+..+..+ .||+.|++-
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 5566776 8999999999999888776 489999874
No 179
>PLN02470 acetolactate synthase
Probab=93.08 E-value=0.72 Score=48.12 Aligned_cols=107 Identities=21% Similarity=0.178 Sum_probs=71.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|-.-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhhe
Confidence 34566666653 3344566677888886 345677788889999999754322111 111122234556677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++.+++.+|+..++.+. ||+.|++-
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 6677776 89999999999998888775 99999884
No 180
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.06 E-value=0.77 Score=47.76 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=71.6
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ..+...|...+++.+--.
T Consensus 57 mAdgyar~t---g~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARAT---GKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 555666542 3345566666888886 44567788888999999986543322111 112223566677776666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
..+|+ ++.++..++++|+..++.+ .||+.|++-.
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 77777 8999999999999888777 4999998843
No 181
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.06 E-value=0.81 Score=48.02 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=70.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... ...+...|...+++.+-
T Consensus 82 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 34555665542 3344566666888886 3456777888889999998543322111 11122235666777666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|+ +++++...+.+|+..++.+ .||+.|++-
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 6667777 8999999999999888776 499999874
No 182
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.99 E-value=0.75 Score=48.13 Aligned_cols=107 Identities=14% Similarity=-0.004 Sum_probs=68.0
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC-
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG- 228 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G- 228 (343)
-+|-|.|.+. +.-.++++..|=|+++ ..-++..|-.-+.|||+|.-.=..... ....+...|..++++.+-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHH
Confidence 3455666542 2334555566888886 345677788888999999843211110 111122234555666554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
-...+|+ +++++...+.+|+..+..+.||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 4566677 88899999999988888888999998743
No 183
>PRK07586 hypothetical protein; Validated
Probab=92.82 E-value=0.9 Score=46.50 Aligned_cols=108 Identities=19% Similarity=0.095 Sum_probs=69.9
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ...+...|....++.+-
T Consensus 52 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARMA---GKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHHH---CCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhcccc
Confidence 34555666542 3334555666888775 3345666888889999998653221111 11122235666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
-...+|. +++++...+++|+..++.+ .||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 5666777 8999999999999888876 6999998743
No 184
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.80 E-value=0.78 Score=47.38 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=69.8
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ..+...|....++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 34566666553 3345566666888885 44667788888999999975433211111 1111224555666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-....|+ +++++...+++|+..++.+ .||+.|++-
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 5677776 8999999999999888776 499999874
No 185
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.77 E-value=0.6 Score=48.62 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=72.8
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHH-HhHh-
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGR- 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~~a~- 225 (343)
.+..|+|+++| +.++++.+-=.+++ .+.|.|.+|+-..+|+|+++.+-.- .++.........|+. .+..
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCC
Confidence 37788888887 34455555555554 6889999999999998887766542 222111111112222 2222
Q ss_pred --hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 226 --AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 226 --a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
-++|+++. ..|+.++++...+|++.+.+..-|+++-...+.
T Consensus 320 hgd~~~ivl~--p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 320 HGEFPRIVLA--PGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCcCceEEc--CCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 23455554 459999999999999888888999999888874
No 186
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.68 E-value=0.98 Score=46.85 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=68.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ...+..-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIG--TDAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCccccc--CCCccccchhhhhhccc
Confidence 34566776653 2233445555888875 3456777888999999997543322111 11111224555666555
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|+ +++++...+.+|++.++.+ .||+.|++-
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5566676 8999999999999888776 499999884
No 187
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.60 E-value=1.1 Score=39.13 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=59.9
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHH-HHHHhC--------CCCEEEEEEcCCCccccccccccCC
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRS 217 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~~ 217 (343)
+.++.|.|+|+. +.++|+.+.=+.|.. -.+|-+ +-++.+ ++||++++..-+++..+++. +.
T Consensus 55 ~~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~ 124 (167)
T cd07036 55 GIVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQ 124 (167)
T ss_pred HHHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hh
Confidence 346677777774 235555433344433 233333 333433 58999999766655444431 23
Q ss_pred ccHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 019322 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (343)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe 263 (343)
+++ ...+++ |+.++.-- |+.+....++.++++ ++|+++-
T Consensus 125 ~~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~~----~~P~~~~ 164 (167)
T cd07036 125 SLE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIRD----DDPVIFL 164 (167)
T ss_pred hHH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 333 455555 66666554 899999999988864 6899874
No 188
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.56 E-value=0.97 Score=46.98 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=69.8
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ...+...|....++.+-
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~--~~~~q~~d~~~l~~~~t 137 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIG--SDAFQEADIMGITMPVT 137 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhhhccc
Confidence 34566666543 3334555666888875 4456777888899999998644322111 11112235556666655
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
-...+|. +++++...+++|+..++.+ .||+.|++-.
T Consensus 138 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 138 KHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 5566666 8899999999999888776 4999998753
No 189
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.52 E-value=1.1 Score=46.54 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=70.6
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-...... ...+...|....++.+--
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 124 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITK 124 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccc
Confidence 3466666543 3344666666888885 4566778888899999998543211111 111122355567777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...+|+ +++++...+.+|+..+..+ .||+.|++-
T Consensus 125 ~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 125 HSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 777787 8999999999999888776 489999874
No 190
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.49 E-value=1.1 Score=46.29 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=67.8
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|||+|.-.-...... ...+...|....++.+=
T Consensus 59 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~t 130 (557)
T PRK08199 59 AMMAEAYGKLT---GRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhh
Confidence 34555666542 3334566666888886 4456777888899999998543221111 11111224555666554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|. +++++...+.+|++.+..+ .||+.|++-
T Consensus 131 k~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 131 KWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 4556665 8999999999999888776 489999774
No 191
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=92.44 E-value=1.1 Score=44.85 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=75.4
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
.+..++|++++ +.++++.+-=.+++ ..+|.|.+|+-..+|+|+++.+-+.....++. ....|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i~--~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNVN--GDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCCC--chHHHHHH-HhcC
Confidence 47788888887 34455555444444 57899999999999998888877754321111 11223332 2334
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEEecCCCCC
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 273 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~--~gP~lIe~~t~R~~gHs 273 (343)
||.++. -.++.++++....|.+.+.+. .-|+++-...++. +|.
T Consensus 137 g~ivl~--p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 137 GWISLC--TCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred CeEEEe--CCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 666654 459999999999999887765 7899998877553 454
No 192
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=92.30 E-value=1.1 Score=47.27 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=62.1
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc-ccccccccCCccHHHhHh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 225 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 225 (343)
+.+++|+|+|++ +.++|+.+ =+.|.+=.+-+-.+.++..++||++++...++.. .+++... ..|++-...
T Consensus 363 ~~vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~ 433 (617)
T TIGR00204 363 HAVTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRC 433 (617)
T ss_pred HHHHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhc
Confidence 346677887763 23444444 4566543333334667889999999998877642 1232222 233332222
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--|+.++.-- |+.++...++.|++. .++|++|..
T Consensus 434 iPgl~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 434 IPNMVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCCcEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 2266655544 889999999888863 348998843
No 193
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.24 E-value=0.96 Score=44.67 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=74.3
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-CccccccccccCCccH-HHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~~~~~~~-~~~a~ 225 (343)
.+..|+|+++| +.++++.+-=+++. .++|.+.+|+-..+|+|+++.+-. -+...++.. ...|+ ..+..
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~--~q~D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRV--AQGDVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCcc--chHHHHHHhcC
Confidence 36788888887 34466655445554 578999999999999988776642 111112111 11222 22222
Q ss_pred h---cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCC
Q 019322 226 A---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (343)
Q Consensus 226 a---~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 275 (343)
+ |++- .+.-.|+.++++...+|++.+.+..-|++|-... +. +|+..
T Consensus 129 ~hgd~~~i--vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 129 THGDFKSI--ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCCcCcE--EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 2 3444 4455699999999999998888889999998877 44 67653
No 194
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=92.17 E-value=1.9 Score=37.67 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=61.4
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCc---chHHHHHH-HHHhCCCCEEEEEEcCCCc--cccccccccCCccH
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE---GDFHAALN-FSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGA 220 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~e---G~~~Eal~-~A~~~~Lpvi~vv~nN~~~--~~~~~~~~~~~~~~ 220 (343)
..+++|+|+|++-+ ...+++..++ .|.. -...+.+. .....++|+. |+..-+++ ...++. .+..++
T Consensus 59 ~~vg~a~GlA~~G~---~~~~~~~~f~--~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH--~s~~d~ 130 (178)
T PF02779_consen 59 NMVGMAAGLALAGG---LRPPVESTFA--DFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH--HSIEDE 130 (178)
T ss_dssp HHHHHHHHHHHHSS---SEEEEEEEEG--GGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT--SSSSHH
T ss_pred hccceeeeeeeccc---ccceeEeecc--ccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc--cccccc
Confidence 34778888888631 1233444443 4433 23445554 6777889988 65555543 333332 223333
Q ss_pred HHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 221 VVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 221 ~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
....++ |+.++.-- |+.++..+++.+++. +.++|++|-.
T Consensus 131 -~~~~~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 131 -AILRSIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp -HHHHTSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred -cccccccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 344444 77777655 899999999988872 2378999865
No 195
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.16 E-value=1.4 Score=45.92 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=68.4
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-..... ....+...|....++.+--
T Consensus 73 ~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 73 HAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAI--GQDAFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCcccccHHHHhcCCcc
Confidence 3566666553 3334555556777775 345577777888999999743221110 0111222355566666666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
...+|. +++++...+.+|++.++.+ .||+.|++-.
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 677777 8999999999999888877 4999998743
No 196
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.09 E-value=1.1 Score=47.03 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=70.3
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ...+...|...+++.+-
T Consensus 62 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARST---GKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhhe
Confidence 33455665542 3334566666888886 3456777888899999998644322111 11122235556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++...+.+|++.++.+. ||+.|++-
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 5666776 89999999999999888874 89999874
No 197
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=92.05 E-value=1.4 Score=43.83 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=74.9
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
.+..++|++++ +.++++.+-=.+++ ..+|.|.+|+-..+|+|+++-|-..+. +..-.....|+. -.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hcccc
Confidence 47788888887 34455555444443 578999999999999999986554443 211111112322 22345
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEEecCCCCCC
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHTT 274 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~--~gP~lIe~~t~R~~gHs~ 274 (343)
||-.+.. .|+.++++....|.+.+.+. .-|+++-...||.. |+.
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~s-H~~ 176 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILT-HTV 176 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhc-Ccc
Confidence 7666554 59999999888998887743 37999999988864 554
No 198
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.91 E-value=1.2 Score=45.98 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=65.6
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccccc---ccccC-CccHHHhHhh
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGRA 226 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~~~~-~~~~~~~a~a 226 (343)
+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-+......... ..+.. ..+....++.
T Consensus 53 ~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARYR---GTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHhh---CCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 455665542 3345666667888886 345677888889999999855332211110 01110 1123455555
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.--...+|. +++.+.+++++|+..+....||+.|++-.
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 544455665 77777777888877776678999998854
No 199
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.90 E-value=1.6 Score=45.38 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=66.8
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...++|||+|.-.-..... ....+...|....++.+--.
T Consensus 53 ~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGM--NMDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC--CCCCcceechhhhhhhcceE
Confidence 44455443 33445666666888875 445677788889999999864332211 11112222444556655545
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
..+|. +++.+...+.+|+..+....||+.|++-.
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 158 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPV 158 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 55665 68888888888887777788999998853
No 200
>PRK12474 hypothetical protein; Provisional
Probab=91.89 E-value=1.4 Score=45.18 Aligned_cols=106 Identities=18% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-........ ...+...|....++.+--
T Consensus 57 ~mAdgYaR~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 57 GAADGYGRIA---GKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHHHh---CCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcC--CCCccccCHHHhhhcccc
Confidence 3455665542 3344566666888775 3345667778889999998643321111 111112356666766655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
....|+ +++++..++++|+..+..+. ||++|++-
T Consensus 129 ~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 129 WVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 556666 89999999999998777664 89999874
No 201
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.77 E-value=1.5 Score=45.59 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=69.0
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ...+...|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 3455555542 3334555566888775 3456777888899999998544322111 111222355666766655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 677776 8999999999999877665 4999998743
No 202
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.69 E-value=1.3 Score=45.94 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=69.5
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ...+...|...+++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 34555665542 3344566666888886 3456777778899999998653321111 11111224555666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++..++.+|++.++.+. ||+.|++-
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 5666776 88999999999998887764 99999874
No 203
>PRK08617 acetolactate synthase; Reviewed
Probab=91.65 E-value=1.5 Score=45.32 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=67.3
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-........ ...+...|....++.+--.
T Consensus 57 ~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 128 (552)
T PRK08617 57 MAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRL--KRTHQSMDNVALFRPITKY 128 (552)
T ss_pred HHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccC--CCCccccchhhhhhhhcce
Confidence 44455443 23334555566888886 3456777888889999997532211111 1111223455667766666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
..+|+ +++++..++.+|++.+..+ .||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 129 SAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 77776 8999999999999888776 489999874
No 204
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.64 E-value=1.4 Score=45.77 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=69.7
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ...+...|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 34566666543 3334555556888775 3355777778889999997543322111 11122235566777766
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++...+++|+..++.+. ||+.|++-
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 6677777 89999999999998887764 89999874
No 205
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=91.60 E-value=2.8 Score=39.45 Aligned_cols=84 Identities=18% Similarity=0.050 Sum_probs=58.4
Q ss_pred eEEEEeCccc--cCcchHHHHHHHHHhCCCCEEEEEEcCC---Ccccccc--ccccCCc-cHHHhHhhcCceEEEEeCCC
Q 019322 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAISTPI--SDQFRSD-GAVVKGRAYGVRSIRVDGND 238 (343)
Q Consensus 167 ~vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~nN~---~~~~~~~--~~~~~~~-~~~~~a~a~G~~~~~VdG~d 238 (343)
.+++++.||. +.+|.....+.-|...++-++||+.+|. -+|.-.. ....... .+......|++|+..|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 8999999999 8888887778888888996666655553 2332110 0011111 56788899999988765 38
Q ss_pred HHHHHHHHHHHHH
Q 019322 239 ALAIYSAVHAARE 251 (343)
Q Consensus 239 ~~~v~~a~~~a~~ 251 (343)
+.++..++..+++
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888888877764
No 206
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.60 E-value=1.1 Score=46.68 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=70.2
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccccc------ccccCC-ccHHH
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI------SDQFRS-DGAVV 222 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~------~~~~~~-~~~~~ 222 (343)
-+|-|.|... ++-.++++..|=|.++ ..-++..|..-+.|||+|.-+-........ ...+.. .|...
T Consensus 64 ~~Adgyar~t---gk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALVT---GKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHhh---CCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 3455555542 3334566667888885 446677888889999999875432221110 001111 25556
Q ss_pred hHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 223 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
.++.+--...+|+ +++++..++.+|+..++.+ .||+.|++-
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 6666655566777 8999999999999888765 699999874
No 207
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.49 E-value=1.6 Score=45.26 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=68.3
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMI--GNDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCcccc--CCCCccccchhhhccCcc
Confidence 44566666543 3344566666888886 345677788889999999743221111 111112234555666555
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|. ++.++..++.+|++.++.+ .||+.|++-
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 4566676 8899999999999888766 489999884
No 208
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.40 E-value=1.5 Score=45.14 Aligned_cols=106 Identities=19% Similarity=0.065 Sum_probs=67.0
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
+|-|.|.. .+.-.++++..|=|.++ ..-++..|...+.|+|+|+-.-...... ...+...|....++.+--.
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 45555543 23334566666888875 3456777888899999998643221111 1112223455666665445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEE
Q 019322 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 266 (343)
..+++ +++++...+.+|++.+..+ .||+.|++-.
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 55665 8999999999998877766 4899998743
No 209
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=90.89 E-value=0.99 Score=38.25 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=69.6
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (343)
.+++++.|+.+|-+ ++..++-.-++.. ++..-.++-..+++|++.++..-++-...-..+.--+.-+.++.+.
T Consensus 53 eg~GIcAGa~lAGk------k~ailmQnsGlGN-siNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~ 125 (172)
T COG4032 53 EGVGICAGAYLAGK------KPAILMQNSGLGN-SINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEG 125 (172)
T ss_pred cceeeehhhhhcCC------CcEEEEeccCcch-HHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhh
Confidence 45678899998842 2333333333321 2222223345688999999887775433221122223346678889
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.++|.+++. .|++-+..+..+...+.+...|+.+-+
T Consensus 126 ~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 126 LELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred cCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 999999998 678888888888888777888987754
No 210
>PTZ00089 transketolase; Provisional
Probab=90.87 E-value=1.5 Score=46.54 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=65.6
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc--ccccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~ 225 (343)
.+++|.|+|+. +.-+++++.+ ..|.+ -.++.+..++..+|||+||+...+++. ++++.. .+.+++-
T Consensus 415 mv~~AaGlA~~----~G~~P~~~tf--~~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq-----~iedia~ 482 (661)
T PTZ00089 415 MCAIMNGIAAH----GGFIPFGATF--LNFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ-----PVETLAL 482 (661)
T ss_pred HHHHHHHHHHc----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc-----cHHHHHH
Confidence 35677777762 1224555555 37765 678889999999999999998777654 333332 2444433
Q ss_pred hc---CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~---G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
-- |+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 483 lR~iPn~~V~~Pa--D~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 483 LRATPNLLVIRPA--DGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred HhcCCCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 33 45555433 888998888888753 468999864
No 211
>PRK05858 hypothetical protein; Provisional
Probab=90.85 E-value=2.2 Score=43.98 Aligned_cols=107 Identities=15% Similarity=0.021 Sum_probs=68.0
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-+-....... ..+...|....++.+-
T Consensus 55 ~~~AdGyar~t---g~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKLT---RVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGM--GSLQEIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHhc---CCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCC--CCCcccchhhhhhhhh
Confidence 34566666552 2334455555777775 44567788888999998875433221111 1111234556677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-...+|+ +++.+...+.+|+..+..+ .||+.|++-
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 6677776 7888988899998877655 589999874
No 212
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.71 E-value=2.1 Score=44.36 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=66.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-..... ....+..-|....++.+-
T Consensus 54 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARAS---GKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhhh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhccc
Confidence 33455555432 3344556666888885 345677778888999999743211110 011111224445666655
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|+ +++++..++++|++.++.+. ||+.|++-
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5556665 89999999999998887665 89999874
No 213
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.59 E-value=2.2 Score=44.60 Aligned_cols=106 Identities=23% Similarity=0.189 Sum_probs=67.1
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ...+...|....++.+--
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 65 HAADGYARST---GKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHHhc---CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCcee
Confidence 3455555442 3334556666888886 3456777888889999997542211100 011112245556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...+|+ +++++...+++|++.++.+ .||+.|++-
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 666777 8999999999999887765 489999874
No 214
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.84 E-value=2.9 Score=43.50 Aligned_cols=103 Identities=16% Similarity=0.000 Sum_probs=62.6
Q ss_pred HHHHHHHHhcccccCCCeEEEE--eCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc
Q 019322 150 PHAVGAAYALKMDRKDACAVTY--FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~--~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (343)
-+|.|.|.+. ++..+|+ .|=|.++ ..-++..|..-+.|+|+|.-+-....... ..+...+..+.++.+
T Consensus 55 ~~Adgyar~t-----g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~i 124 (574)
T PRK09124 55 FAAGAEAQLT-----GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFREC 124 (574)
T ss_pred HHHHHHHHhh-----CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhcccc
Confidence 3455665542 2334454 4666665 23457777888899999986433221111 111122444555555
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 228 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
-....+|+ +++++...+.+|+..+....||+.|++
T Consensus 125 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 125 SHYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred eeeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 44555666 788888888888877777779999987
No 215
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=89.80 E-value=2.8 Score=42.64 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=61.5
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEe-CccccCcchHHHHHHHHH--------hCCCCEEEEEEcCCCccccccccccCC
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRS 217 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~nN~~~~~~~~~~~~~~ 217 (343)
+.+++|+|+|++ .-++++.++ .+-.. =.+-+-.|-++ .+++||+|+..|.+.+..+. ..+.
T Consensus 200 ~~vg~AaGlA~~-----G~rPiv~~~~~~f~~--ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~ 269 (464)
T PRK11892 200 GFAGIGVGAAFA-----GLKPIVEFMTFNFAM--QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQ 269 (464)
T ss_pred HHHHHHHHHHhC-----CCEEEEEEehHHHHH--HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---cccc
Confidence 346778888875 234444443 22222 12334446666 88999999988877654333 2222
Q ss_pred ccHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 019322 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (343)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe 263 (343)
.++ ...+.. |+.++.-- |+.+....++.|++ .++|++|-
T Consensus 270 ~d~-a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 270 DYA-AWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred CHH-HHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 333 444444 77766544 88889999988885 36899873
No 216
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=89.79 E-value=2.4 Score=44.40 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=68.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhC--CCCEEEEEEcCCCccccccccccCCccHHHhHhh
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (343)
+.+|+|+++| +.++++.+-=.+++ ...|.|..++.. .+|+|+++-|. -+-. ..+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~---~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMH---SSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCc---cchhhHhHHH-HHHh
Confidence 5678888886 33455554444443 456667666644 45777777654 2111 1111122322 3445
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCC
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 274 (343)
.+|+++.-. ++.++++...+|++.+++.+-|++|-... + -+|+.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~-~-l~h~~ 169 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT-R-ISHMR 169 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee-e-eccce
Confidence 688866555 89999999999999998899999998865 4 34554
No 217
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.65 E-value=2.6 Score=44.07 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=62.2
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHH-HHHHHHhCCCCEEEEEEcCCCcc-ccccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~E-al~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 225 (343)
.+++|.|+|+. +.++|+.+ =..|.+ -.++ -.+.++..++|++++....++.. .+++.. ...|++-...
T Consensus 333 mvg~A~GlA~~------G~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~ 402 (580)
T PRK05444 333 AVTFAAGLATE------GLKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRC 402 (580)
T ss_pred HHHHHHHHHHC------CCeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhc
Confidence 35677788773 23444443 445654 3444 45557889999999998776532 122222 2233433322
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--|+.++.-- |+.++..+++.|++. .++|++|..
T Consensus 403 iP~l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 403 IPNMVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 2366666655 899999999998863 368998854
No 218
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.64 E-value=2.5 Score=44.80 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=62.0
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHH-HHHHhCCCCEEEEEEcCCCc-cccccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~~~a~ 225 (343)
.+++|.|+|++ .-+++++++ ..|.+ -.++.+ +.++..++|+++++...++. .++++... ..+++-...
T Consensus 373 mvg~AaGlA~~-----G~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~ 442 (641)
T PRK12571 373 AVTFAAGLAAA-----GLKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTN 442 (641)
T ss_pred HHHHHHHHHHC-----CCEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhc
Confidence 35677777763 234445444 35654 444555 56889999999999777653 22333322 223332222
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--|+.++.-- |+.++..+++.|+++ .++|++|-.
T Consensus 443 iPnl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 476 (641)
T PRK12571 443 LPNMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRF 476 (641)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 2266666544 889999999988863 369999954
No 219
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.64 E-value=2.2 Score=44.65 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=62.0
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (343)
+.+++|.|+|+. + -+++++.+.+ |.+-.+-+-.+-++..++||+|++...++.-++++... ..|++- .+.
T Consensus 331 ~~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~-lr~ 400 (581)
T PRK12315 331 ESVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPM-ISN 400 (581)
T ss_pred HHHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHH-Hhc
Confidence 345667777763 2 3455555543 43323333445578889999999987776644444432 233332 222
Q ss_pred c-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 227 ~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
. |+.++.- .|+.++..+++.|++. .++|++|-.
T Consensus 401 iPnl~V~~P--~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 401 IPNLVYLAP--TTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CCCCEEEec--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 2 5555543 3888999999888752 368999865
No 220
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=89.50 E-value=2 Score=45.55 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=63.6
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccc--cccccccCCccHHHhHhh
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~--~~~~~~~~~~~~~~~a~a 226 (343)
+++|.|+|+. +.-.++++.+ ..|.+ -.++++.+++..++||++|....+++.. +++.. +.++++- .++
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq--~iedia~-lr~ 478 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQ--PIEQLAS-LRA 478 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccC--CHHHHHH-Hhc
Confidence 4667777762 1122333323 35654 5678889999999999999987776543 33331 2233332 233
Q ss_pred c-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 227 ~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
. |+.++.-- |..++..+++.+++. .++|++|-.
T Consensus 479 iPn~~v~~Pa--D~~E~~~~~~~a~~~---~~gP~~irl 512 (653)
T TIGR00232 479 IPNLSVWRPC--DGNETAAAWKYALES---QDGPTALIL 512 (653)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhc---CCCcEEEEE
Confidence 3 66666655 888999999888842 478998854
No 221
>PLN02573 pyruvate decarboxylase
Probab=89.38 E-value=2.3 Score=44.35 Aligned_cols=107 Identities=18% Similarity=0.102 Sum_probs=66.2
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccc---cccccCCc---cHHHh
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRSD---GAVVK 223 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~---~~~~~~~~---~~~~~ 223 (343)
-+|-|.|.+. + -.++++..|=|+++ ..-++..|..-+.|||+|.-.-....... ........ ...+.
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3455665543 3 45667777888885 33457778888899999986433221110 00000001 11244
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 224 a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
++.+--...+|. +++++...+++|+..++.+.||+.|++-
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP 180 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVS 180 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 555555566676 7888888888888888778899999873
No 222
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=89.17 E-value=2.8 Score=44.28 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=61.4
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc-ccccccccCCccHHHhHhh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~a 226 (343)
.+++|.|+|+. .-+++++++ +.|.+-.+-+-.+.++..++||+|++...++.. .+++... ..|++ ..+.
T Consensus 411 ~Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia-~lr~ 480 (641)
T PLN02234 411 AVTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVT-FMAC 480 (641)
T ss_pred HHHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHH-HHhc
Confidence 35667777763 234444443 455443333444677889999999998877532 2333222 12222 2222
Q ss_pred c-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecC
Q 019322 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (343)
Q Consensus 227 ~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 269 (343)
+ |+.++.-- |+.++..+++.|... .++|++| +..|.
T Consensus 481 iPnl~V~~Ps--d~~E~~~~l~~a~~~---~~~Pv~i--r~~R~ 517 (641)
T PLN02234 481 LPNMIVMAPS--DEAELFNMVATAAAI---DDRPSCF--RYHRG 517 (641)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEE--Eeecc
Confidence 2 66666554 888998888887653 4589988 34443
No 223
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=89.12 E-value=4.4 Score=39.76 Aligned_cols=101 Identities=21% Similarity=0.159 Sum_probs=59.4
Q ss_pred cCchHHHHHHHHhcccccCCCeEEEEe-CccccCcchHHHHHHHHHhCC--------CCEEEEEEcCCCcc-cccccccc
Q 019322 146 ATQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAI-STPISDQF 215 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~--------Lpvi~vv~nN~~~~-~~~~~~~~ 215 (343)
.+.+++|+|+|++ ..++++++. .| |.+=.+-+-.+-++.++ +||+++..+ +... .++++.
T Consensus 84 q~~vg~AaGlA~~-----G~~P~v~~~~~~--f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~tH~-- 153 (356)
T PLN02683 84 AGFTGIGVGAAYA-----GLKPVVEFMTFN--FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQHS-- 153 (356)
T ss_pred HHHHHHHHHHHHC-----CCEEEEEEehhh--HHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCccc--
Confidence 4446778888875 234444443 22 22212333345566555 899999877 4322 223332
Q ss_pred CCccHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 216 RSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 216 ~~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
..+ ....++. |+.++.-- |+.++..+++.|++ .++|++|-.
T Consensus 154 -~~~-~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 154 -QCF-AAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred -cCH-HHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 222 3455554 77777655 89999999998885 368999853
No 224
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=89.12 E-value=3.1 Score=42.80 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccccccccc-CCccHHHhHhhcC
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYG 228 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~-~~~~~~~~a~a~G 228 (343)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-.+.... ...+ ...|....++.+-
T Consensus 62 ~~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~--~~~~~~~~d~~~l~~~~t 133 (530)
T PRK07092 62 GMADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILP--FEPFLAAVQAAELPKPYV 133 (530)
T ss_pred HHHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccC--ccchhcccCHHHhhcccc
Confidence 3566666543 3334455556777774 4456777888889999887543322211 1111 1124445555554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-gP~lIe~~ 265 (343)
-...+|. +++++.+.+.+|+..++.+. ||+.|++-
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 134 KWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred cceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 4455564 89999999999998887764 79999875
No 225
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=89.09 E-value=2.7 Score=41.90 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCCHHHHHHHhhcCCC-----CCCCCCCcccccC---CCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCcc
Q 019322 104 GFSMQEFANQCFGNKA-----DYGKGRQMPIHYG---SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG 175 (343)
Q Consensus 104 G~~~~~~~~~~~g~~~-----~~~~G~~~~~h~~---~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG 175 (343)
|..=.++|.+++.+.+ ++-.|.-++.|-. +.+.++.-. -+--.+.=.|-|.|.+. ++..+|++..|-|
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLP-rHEQgaghaAegYaR~s---gKPGvvlvTSGPG 165 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLP-RHEQGAGHAAEGYARSS---GKPGVVLVTSGPG 165 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCcccccccc-ccccccchhhhhhhhhc---CCCcEEEEecCCC
Confidence 3344567777776544 3334555776632 122232211 11111122455666554 5677899999999
Q ss_pred ccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhh
Q 019322 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 254 (343)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r 254 (343)
+++ +-.-|.-|-.-+.|+|++- .+..-+.-..+.+...|+..+-+++ -|++. |. |++++.+-+.+|++.+.
T Consensus 166 ATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvm-Vk--dVedlPrrI~EAFeiAT 237 (675)
T KOG4166|consen 166 ATN---VVTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVM-VK--DVEDLPRRIEEAFEIAT 237 (675)
T ss_pred ccc---ccchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceehee-ee--cHHHhhHHHHHHhhhhc
Confidence 996 3334556666788977653 2221111111222333444444444 34333 33 78999999999998876
Q ss_pred cc-CCcEEEEE
Q 019322 255 GE-GRPILIEA 264 (343)
Q Consensus 255 ~~-~gP~lIe~ 264 (343)
.+ .||+|+++
T Consensus 238 SGRPGPVLVDl 248 (675)
T KOG4166|consen 238 SGRPGPVLVDL 248 (675)
T ss_pred cCCCCCeEeeC
Confidence 66 48999875
No 226
>PRK06154 hypothetical protein; Provisional
Probab=88.83 E-value=3.1 Score=43.32 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=59.6
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHH
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 246 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~ 246 (343)
++++..|=|.++ ..-++..|..-+.|||+|.-........ .. ...+....++.+--...+|+ +++++...+
T Consensus 84 v~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~--~~~d~~~~~~~vtk~~~~v~--~~~~~~~~i 154 (565)
T PRK06154 84 VFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD--VA--PNFESLRNYRHITKWCEQVT--LPDEVPELM 154 (565)
T ss_pred EEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc--CC--CCcchhhhHhhcceeEEECC--CHHHHHHHH
Confidence 334446888875 4456777888899999998543221110 00 01233455665555566677 899999999
Q ss_pred HHHHHHhhcc-CCcEEEEEEE
Q 019322 247 HAAREMAIGE-GRPILIEALT 266 (343)
Q Consensus 247 ~~a~~~~r~~-~gP~lIe~~t 266 (343)
.+|++.++.+ .||+.|++-.
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHhcCCCceEEEecch
Confidence 9999888775 5999998743
No 227
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.76 E-value=3.5 Score=43.92 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=62.5
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc-ccccccccCCccHHHhHh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 225 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 225 (343)
+.+++|.|+|+. .-+++++++ ..|.+=.+-+-.+-++..++||+|++...++.. ++++... ..|++-...
T Consensus 409 ~~vg~AaGLA~~-----G~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~ 479 (677)
T PLN02582 409 HAVTFAAGLACE-----GLKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMAC 479 (677)
T ss_pred HHHHHHHHHHHC-----CCeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhc
Confidence 345667777763 235555554 455442333455777889999999998776632 2333221 123322222
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--|+.++.-- |+.++..+++.|++. .++|++|..
T Consensus 480 iPnl~V~~Ps--d~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 480 LPNMVVMAPS--DEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 2266666544 888999999888863 358998853
No 228
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.75 E-value=3.4 Score=44.03 Aligned_cols=104 Identities=10% Similarity=0.060 Sum_probs=63.4
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc-ccccccccCCccHHHhHh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 225 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 225 (343)
+.+++|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+|++..-++.. ++++.. ...|++-...
T Consensus 434 haVt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~ 504 (701)
T PLN02225 434 HAVTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSS 504 (701)
T ss_pred HHHHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhc
Confidence 346667777764 346677777 467553344445557889999999998765432 222222 1233432222
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--|+.++.-- |+.++...++.|... .++|++|-.
T Consensus 505 IPnm~V~aPs--D~~El~~mL~~A~~~---~~gPv~IR~ 538 (701)
T PLN02225 505 LPNMIAMAPA--DEDELVNMVATAAYV---TDRPVCFRF 538 (701)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 2266555544 889999999887742 468999854
No 229
>PRK05899 transketolase; Reviewed
Probab=88.53 E-value=3.1 Score=43.84 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=64.7
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc--ccccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~ 225 (343)
.+++|.|+|+. +.-+++++.+ ..|. .-.++.+.++...++|++++....+++. .+++.. +.++++-...
T Consensus 379 ~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq--~~edia~~r~ 449 (624)
T PRK05899 379 MAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQ--PVEQLASLRA 449 (624)
T ss_pred HHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcc--cHHHHHHHHh
Confidence 35667777764 2123333322 3554 4677888888889999999998888654 344431 2233332222
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--|+.++.-- |+.++..+++.+++. .++|++|-.
T Consensus 450 iP~~~V~~P~--d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 450 IPNLTVIRPA--DANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCCcEEEeCC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 2266555544 889999999988862 368998866
No 230
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=88.40 E-value=3.7 Score=42.78 Aligned_cols=105 Identities=19% Similarity=0.056 Sum_probs=62.9
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ...+...+...+++.+--.
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIG--SGFFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCccccChhhhcccceee
Confidence 455555442 2223344445777775 2345777888899999997532211110 0111112334455544444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 019322 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (343)
Q Consensus 231 ~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~ 265 (343)
..+|. +++++..++.+|++.+....||+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 56666 8888998899998888777899999874
No 231
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=88.17 E-value=1.6 Score=43.67 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=61.5
Q ss_pred HHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCc
Q 019322 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (343)
Q Consensus 150 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (343)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|-.-+.|||+|.-.-...... ...+...|..+.++.+--
T Consensus 52 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRG--CGANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhcc---CCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhC--CCCCcccchhhHHhhccc
Confidence 3455666542 3445666666888875 3456777778889999997543211110 011112244555665554
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 230 ~~~~VdG~d~~~------v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...+|. ++.+ +...+.+|+..+..+ .||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 455554 3333 666667777666554 489999884
No 232
>PRK12753 transketolase; Reviewed
Probab=87.75 E-value=3.5 Score=43.86 Aligned_cols=100 Identities=16% Similarity=0.036 Sum_probs=65.2
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccc--cccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~--~~~~~~~~~~~~~~~a~ 225 (343)
.+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..++||++|....+++.. +++. ..+.+++-
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~TH-----q~iedla~ 481 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTH-----QPVEQLAS 481 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccc-----ccHHHHHH
Confidence 35677788761 1123444444 46655 7888999999999999999888877663 3332 22344433
Q ss_pred hc---CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~---G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
-- |+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 482 lR~iPn~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 482 LRLTPNFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred HhcCCCCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 33 55555544 788888888888863 368988855
No 233
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=86.38 E-value=7.3 Score=38.17 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred CchHHHHHHHHhcccccCCCeEEEE-eCccccCcchHHHHHHHHHh--------CCCCEEEEEEcCCCccccccccccCC
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~~ 217 (343)
+.+++|.|+|++ ..++++++ +. .|.+-.+-+-.+-++. +++|+|++.....++..+++..+
T Consensus 93 ~~vg~AaGlA~~-----G~~Pvv~~~fa--~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~--- 162 (355)
T PTZ00182 93 GFAGFAIGAAMN-----GLRPIAEFMFA--DFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ--- 162 (355)
T ss_pred HHHHHHHHHHhC-----CCEEEEEechh--hHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc---
Confidence 346778888875 23344443 34 3322223333334444 35677777654455555555432
Q ss_pred ccHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 019322 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (343)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe 263 (343)
.+....++. |+.++.-- |+.++..+++.+++. ++|++|-
T Consensus 163 -~~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~~----~~P~~i~ 202 (355)
T PTZ00182 163 -SFEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIRD----PNPVVFF 202 (355)
T ss_pred -hHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 122455544 77776655 889999999988863 6899773
No 234
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=85.55 E-value=7.8 Score=38.13 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=74.5
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (343)
..++.++|++++- -+..-...|.|-. .++|.+-+|+-..+|+|+++.+.........-.. ...|+...-.+
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~-dq~D~~~~r~~ 128 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG-DQSDLMAARDT 128 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc-cHHHHHHHHcc
Confidence 4578888998873 3344455565555 4789999999999999999888765443321111 11233322222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCC
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 270 (343)
||+.+-.. |+.+.+...-.|.+.+.+..-|+++-..-++..
T Consensus 129 -g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 129 -GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred -CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 88888776 787877777778877777788999876665543
No 235
>PRK12754 transketolase; Reviewed
Probab=84.64 E-value=6.3 Score=41.93 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=63.7
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhc-
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY- 227 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~- 227 (343)
.++|.|+|+- +.-.+.++.+ ..|.. -.++++.+++..++||++|....+++....... ...+.+++---
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~T---Hq~iEdla~lR~ 484 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPT---HQPVEQVASLRV 484 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCC---cccHHHHHHHhc
Confidence 4667777762 1112333333 36654 788899999999999999998888766432211 12244444323
Q ss_pred --CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 228 --GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 228 --G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
|+.+++-- |..++..+++.|+++ .++|+.|-.
T Consensus 485 iPn~~V~~Pa--D~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 485 TPNMSTWRPC--DQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred CCCcEEecCC--CHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 55555543 788888888888863 468997754
No 236
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=84.47 E-value=9.8 Score=36.79 Aligned_cols=102 Identities=20% Similarity=0.130 Sum_probs=56.9
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhC--------CCCEEEEEEcCCCccccccccccCCc
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~~~ 218 (343)
+.++.|+|+|++ ..++++++.. ..|.+=.+-+-.+-++.. ++|+++...+-.++..++++.+.
T Consensus 62 ~~vg~AaGlA~~-----G~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~--- 132 (327)
T PRK09212 62 GFAGLAVGAAFA-----GLRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC--- 132 (327)
T ss_pred HHHHHHHHHHHc-----CCeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC---
Confidence 446778888874 2344555442 111111122222333333 56888877665555544444221
Q ss_pred cHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
+....+.. |+.++.-- |+.++..+++.|.+ .++|++|--
T Consensus 133 -~ea~~r~iP~l~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~~ 172 (327)
T PRK09212 133 -YAAWYSHIPGLKVVAPY--FAADCKGLLKTAIR----DPNPVIFLE 172 (327)
T ss_pred -HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 22444444 66666544 89999999998886 378999843
No 237
>PLN02790 transketolase
Probab=83.61 E-value=6.5 Score=41.77 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=61.9
Q ss_pred chHHHHHHHHhccccc-CCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcc--ccccccccCCccHHHhH
Q 019322 148 QLPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 224 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~-~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a 224 (343)
.+.+|.|+|+. + .-+++++.+ ..|.. ...+++.+++..++||+||+...+++. ++++.. .+.+++
T Consensus 404 mv~~AaGlA~~----G~G~~P~~~tf--~~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq-----~iedla 471 (654)
T PLN02790 404 MGAICNGIALH----SSGLIPYCATF--FVFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ-----PIEHLA 471 (654)
T ss_pred HHHHHHHHHhc----CCCcEEEEEec--HHHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc-----cHHHHH
Confidence 35677777763 1 123344333 23332 466788889999999999998877654 333332 244444
Q ss_pred hhc---CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 225 RAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 225 ~a~---G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
--- |+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 472 ~lR~iPnl~V~~Pa--D~~E~~~~l~~al~~---~~gP~~irl 509 (654)
T PLN02790 472 SLRAMPNILMLRPA--DGNETAGAYKVAVTN---RKRPTVLAL 509 (654)
T ss_pred HhcCCCCcEEEeCC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 333 44455433 888888888888763 468988854
No 238
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=82.18 E-value=4.8 Score=47.31 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=67.0
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
.-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-+.|+|+|.-+-....... ..+...|....++.+-
T Consensus 352 afmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~--ga~Q~iDq~~lf~pvt 423 (1655)
T PLN02980 352 AFHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDA--GANQAINQVNHFGSFV 423 (1655)
T ss_pred HHHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcC--CCCcccchhhHHHhhh
Confidence 34677777653 4445666777888875 56778888889999999986643221111 1111224445566554
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 229 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 229 ~~~~~VdG~d~~~------v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
-....|. ++.+ +..++++|+..++.+ .||+.|++-
T Consensus 424 K~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 4455553 4444 346777777777666 499999985
No 239
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=81.27 E-value=6.2 Score=41.35 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcCCCccc--cccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCC
Q 019322 181 DFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (343)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~~--~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~g 258 (343)
...-++.+|+..++|+++|.....++.. +|+.. +.+.++.+=.-.|+.+++-- |..+...+.+.|+++ .++
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHq--PiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~g 512 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQ--PVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDG 512 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCC--cHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCC
Confidence 3456799999999999999999987664 44432 23334433333477777744 666778888888874 589
Q ss_pred cEEEEEE
Q 019322 259 PILIEAL 265 (343)
Q Consensus 259 P~lIe~~ 265 (343)
|++|...
T Consensus 513 Pt~Lilt 519 (663)
T COG0021 513 PTALILT 519 (663)
T ss_pred CeEEEEe
Confidence 9998653
No 240
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=79.61 E-value=12 Score=38.51 Aligned_cols=107 Identities=21% Similarity=0.117 Sum_probs=57.2
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccc---cccccc---CCccHHH
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST---PISDQF---RSDGAVV 222 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~---~~~~~~---~~~~~~~ 222 (343)
.-+|-|.|.+. + ..++++..|=|+++ ..-++..|..-+.|||+|.-.-...-.. ...... ...++.+
T Consensus 52 ~~mAdgyar~t---g-~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~ 124 (539)
T TIGR03393 52 AYAADGYARCK---G-AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYR 124 (539)
T ss_pred HHHhhhhhhhc---C-ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHH
Confidence 44566666553 3 24556667888885 3345667888889999998533221000 000000 0112233
Q ss_pred hHhhcCceEEEEeCCC-HHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 223 KGRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 223 ~a~a~G~~~~~VdG~d-~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.++..--....++-.+ +..+.++++.|+. ..+|+.|++-.
T Consensus 125 ~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~ 165 (539)
T TIGR03393 125 MAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPV 165 (539)
T ss_pred HhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEecc
Confidence 4433322233333334 5666777766664 46899998853
No 241
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=78.30 E-value=21 Score=34.50 Aligned_cols=101 Identities=12% Similarity=0.005 Sum_probs=53.7
Q ss_pred cCchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHH-HHHHHhC--------CCCEEEEEEcCCCccccccccccC
Q 019322 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA-LNFSAVT--------EAPVIFICRNNGWAISTPISDQFR 216 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Ea-l~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~ 216 (343)
.+.++.|+|+|++ ..+++++.+.---++ -.+|- .+-++.+ ++|++++.-.-.++..+++..+
T Consensus 61 q~~vg~AaGlA~~-----G~~pvv~~~~~~f~~--ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~-- 131 (327)
T CHL00144 61 NSFTGMAIGAAMT-----GLRPIVEGMNMGFLL--LAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQ-- 131 (327)
T ss_pred HHHHHHHHHHHHC-----CCEEEEEeehhhHHH--HHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccc--
Confidence 3446778888875 234444434311111 22232 2333333 6688777432222223333211
Q ss_pred CccHHHhHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 019322 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (343)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe 263 (343)
.+....+.+ |+.++.-- |+.+.+..++.|.+ .++|++|-
T Consensus 132 --~~ea~~~~iPgl~V~~Ps--d~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 132 --RLESYFQSVPGLQIVACS--TPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred --cHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 233455544 66666554 88999999988875 47899884
No 242
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=75.18 E-value=81 Score=36.04 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=67.5
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcC
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (343)
+..++|++.+ +.++.+++-=.++. .+.|.|-.++-..+|+|+++.+-.+..... .-.....|+ ..++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~-~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHAL-SIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCCC-ccCCCchHH-HHhhcCC
Confidence 5666776654 23454444333332 467888666656889999888765443210 000011233 2345667
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCC
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 273 (343)
|.++.. .++.++++....|...+.+...|+++-..-+|. +|.
T Consensus 134 ~ivl~s--~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 134 FAMLAS--SSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred eEEEeC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 755544 488888888778877777778899987776654 454
No 243
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=74.94 E-value=5.4 Score=24.62 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 019322 295 DPVTRFRKWIESNGWWNGDIESELRSSV 322 (343)
Q Consensus 295 dPi~~~~~~L~~~g~~~~~~~~~i~~~~ 322 (343)
+++..++ .|.++|.+|++|.++.++++
T Consensus 3 ~~L~~L~-~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLK-ELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 3455564 46788999999999888775
No 244
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=74.86 E-value=22 Score=33.87 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=65.4
Q ss_pred ccccccC-chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHH-hCCCCEEEEEEcCCCccccccccccCCc
Q 019322 141 VSSTIAT-QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQFRSD 218 (343)
Q Consensus 141 ~~g~lG~-~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lpvi~vv~nN~~~~~~~~~~~~~~~ 218 (343)
+.|+..+ -++.|+|.|++-| .+.++ +=+.|..+-.||=+..+. ..+|||-+|+.+-+++....... ..
T Consensus 53 NvGIaEQ~mvg~AAGLA~~Gk-----~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~s---Hq 122 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAGK-----KPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSS---HQ 122 (312)
T ss_pred ecchHHHHHHHHHHHHHhcCC-----Cceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCcc---ch
Confidence 3444433 3678888888632 33333 446887777777776654 55789999999998655422111 12
Q ss_pred cHHHhHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 219 GAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 219 ~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.+.++|---|+|-..| .-.|..+..+++..+.++ +||+-+-.
T Consensus 123 ~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~~----~GP~Y~Rl 165 (312)
T COG3958 123 ALEDIAIMRGLPNMTVIAPADAVETRAILDQIADY----KGPVYMRL 165 (312)
T ss_pred hHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHhc----CCCEEEEe
Confidence 2444444345443332 333666777777666664 89988743
No 245
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=74.65 E-value=25 Score=30.04 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=56.9
Q ss_pred chHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCC-CCEEEEEEc-CCCccccccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lpvi~vv~n-N~~~~~~~~~~~~~~~~~~~~a~ 225 (343)
.+++|.|+|+. +. ++++++... |.. ...+.+.+...++ +|+|+.... ..++..+++... .+++. +..
T Consensus 61 ~vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~--~~~~~-~~~ 129 (168)
T smart00861 61 MVGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHS--QEDEA-LLR 129 (168)
T ss_pred HHHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCccccc--hhHHH-HHh
Confidence 35667777765 32 555555533 322 3566777777776 566555543 444444433322 22232 222
Q ss_pred hc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 226 AY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 226 a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.. |+.++. =.|+.++...++.++++ .++|++|-.
T Consensus 130 ~iP~~~v~~--P~~~~e~~~~l~~a~~~---~~~p~~i~~ 164 (168)
T smart00861 130 AIPGLKVVA--PSDPAEAKGLLRAAIRR---DDGPPVIRL 164 (168)
T ss_pred cCCCcEEEe--cCCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 22 454544 44899999999988853 468977743
No 246
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=73.56 E-value=22 Score=37.13 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=62.2
Q ss_pred CchHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC-CccccccccccCCccHHHhHh
Q 019322 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGAVVKGR 225 (343)
Q Consensus 147 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~~~~~~~~~~a~ 225 (343)
+.+..|.|+|.+ .-++||++.. .|-|=.+-+-+.=.+..+|||+|+|+-.+ .+.++++.... -|++-.
T Consensus 369 HAVT~AAGlA~~-----G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~--fDls~l-- 437 (627)
T COG1154 369 HAVTFAAGLAAE-----GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGL--FDLSFL-- 437 (627)
T ss_pred HHHHHHHHHHhC-----CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccH--HHHHHH--
Confidence 334555555543 3456777662 33333334444456778999999999776 45666655432 122222
Q ss_pred hcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 019322 226 AYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 263 (343)
Q Consensus 226 a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~gP~lIe 263 (343)
--+|.+.| --.|..++...+..|..+ .++|+.|.
T Consensus 438 -~~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiR 472 (627)
T COG1154 438 -RCIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIR 472 (627)
T ss_pred -hcCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEE
Confidence 23444443 345899999999999986 55899985
No 247
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=69.49 E-value=14 Score=39.91 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=59.4
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHH
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~ 244 (343)
+++.||+.|+... +..+-.+..+|.+.+.|...|...+.-....+............+|+.+|....++.|.|+..
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~--- 324 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK--- 324 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH---
Confidence 5677888776554 458899999999999997666433322221111111122345678999999999999988643
Q ss_pred HHHHHHHHhhccCCcEEEEEEE
Q 019322 245 AVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 245 a~~~a~~~~r~~~gP~lIe~~t 266 (343)
...++||..+--.+|.-+.
T Consensus 325 ---~i~~ya~~~~~TkiViG~~ 343 (890)
T COG2205 325 ---AIARYAREHNATKIVIGRS 343 (890)
T ss_pred ---HHHHHHHHcCCeeEEeCCC
Confidence 2334555555555554443
No 248
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=68.68 E-value=17 Score=30.10 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=45.6
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHH
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~ 244 (343)
.++.++++.||.-. +...+.++.+...+.++.+|........ ...+..+++.-|..++.++ .+..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 56899999999776 4455667776666666555543322111 1346677888888888884 25577777
Q ss_pred HHHH
Q 019322 245 AVHA 248 (343)
Q Consensus 245 a~~~ 248 (343)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 249
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=65.38 E-value=16 Score=29.61 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=27.8
Q ss_pred ccHHHhHhhcCceEEE--EeCCCH-HHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 218 DGAVVKGRAYGVRSIR--VDGNDA-LAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 218 ~~~~~~a~a~G~~~~~--VdG~d~-~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.++.+.+++.|+..+. |.+.++ .+-..++.++++. ..+|+++.|++
T Consensus 47 ~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~---~~~Pvl~hC~s 95 (110)
T PF04273_consen 47 AEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES---LPKPVLAHCRS 95 (110)
T ss_dssp HCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT---TTTSEEEE-SC
T ss_pred HHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh---CCCCEEEECCC
Confidence 4577889999988776 444333 3344556666653 57899999965
No 250
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=63.75 E-value=49 Score=30.96 Aligned_cols=97 Identities=20% Similarity=0.109 Sum_probs=57.8
Q ss_pred cccCchHHHHHHHHhcccccC-CCeEEEEeCccccC----cchHHHHHHHHHhCCC-CEEEEEEcCCCccccccccccCC
Q 019322 144 TIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTS----EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRS 217 (343)
Q Consensus 144 ~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG~~~----eG~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~ 217 (343)
+|..+|-.|..+..-.+.++| .+.+++++-||=.+ .+...|++..|..... ++.++|.|-.- .. ...
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~------~~-~~~ 227 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEG------SE-VRL 227 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCC------cc-ccc
Confidence 445555555444433344444 45788899999773 4556788888877665 44333322111 11 111
Q ss_pred ccHHHhHhhcCceEEEEeCCCHHHHHHHHH
Q 019322 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (343)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~ 247 (343)
.-..++|..+|.+++.++...-..+..+.+
T Consensus 228 g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r 257 (261)
T COG1240 228 GLAEEIARASGGEYYHLDDLSDDSIVSAVR 257 (261)
T ss_pred cHHHHHHHHhCCeEEecccccchHHHHHHH
Confidence 224578889999999999766666665554
No 251
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.90 E-value=21 Score=30.89 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=36.7
Q ss_pred ccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.-.+--|+|||..++.++|.+-+.+...++..+++ .+||..|+..+
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 34566789999999999998767788888887775 78998887643
No 252
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=62.86 E-value=57 Score=28.48 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=47.3
Q ss_pred CCeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHH
Q 019322 165 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (343)
Q Consensus 165 ~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 243 (343)
.+.++++++||+-. .+...+....++..+++|.+|-..+. ..-+.++|++-|-..+.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35678888888764 33455666667777776654433211 1237788999999999886 888888
Q ss_pred HHHHHH
Q 019322 244 SAVHAA 249 (343)
Q Consensus 244 ~a~~~a 249 (343)
+++.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 777653
No 253
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=61.76 E-value=13 Score=38.51 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhC--CCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHH
Q 019322 181 DFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (343)
Q Consensus 181 ~~~Eal~~A~~~--~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 243 (343)
....+|.-+.++ |+|++++++|..- ... .+-.+.++.||++++.||+|.|.+..
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsT------eED---ipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGST------EED---IPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCc------ccc---cHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 344567777776 4799999987632 221 12456789999999999999886644
No 254
>PRK13685 hypothetical protein; Provisional
Probab=59.46 E-value=95 Score=29.77 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=51.4
Q ss_pred CeEEEEeCccccCcch-------HHHHHHHHHhCCCCEEEEEEcCCCc-ccccccc---ccCCccHHHhHhhcCceEEEE
Q 019322 166 ACAVTYFGDGGTSEGD-------FHAALNFSAVTEAPVIFICRNNGWA-ISTPISD---QFRSDGAVVKGRAYGVRSIRV 234 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~-------~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~---~~~~~~~~~~a~a~G~~~~~V 234 (343)
..+|+++.||.-+.|. ..++.+.+...+++|-.|-.-+..+ +...... ......+.++|+.-|...+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876542 3466777888888875554333221 1100000 112234778888889888888
Q ss_pred eCCCHHHHHHHHHHHH
Q 019322 235 DGNDALAIYSAVHAAR 250 (343)
Q Consensus 235 dG~d~~~v~~a~~~a~ 250 (343)
+ |+.++.+++++.-
T Consensus 274 ~--~~~~L~~if~~I~ 287 (326)
T PRK13685 274 A--SLEELRAVYATLQ 287 (326)
T ss_pred C--CHHHHHHHHHHHH
Confidence 6 7777777776643
No 255
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=58.67 E-value=1.6e+02 Score=28.75 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=84.4
Q ss_pred HHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 019322 184 AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (343)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~lI 262 (343)
+++..+...+..+||||+=|. |+.......++..+++.....++ .||- -..+... ......+. ..|-+|
T Consensus 136 ~~~~~~~~~~~~lv~i~nPNN-----PTG~~~~~~~l~~l~~~~~~~~~vVvDE-AY~eF~~--~~~~~l~~--~~~nli 205 (356)
T COG0079 136 DAILAAIRDKTKLVFLCNPNN-----PTGTLLPREELRALLEALPEGGLVVIDE-AYIEFSP--ESSLELLK--YPPNLI 205 (356)
T ss_pred HHHHHhhhcCCCEEEEeCCCC-----CCCCCCCHHHHHHHHHhCCCCcEEEEeC-chhhcCC--chhhhhcc--CCCCEE
Confidence 445555455788999997332 45455555677777776533222 3451 1111111 22333322 346588
Q ss_pred EEEEecC-CCCCCCCCCCCCCCHHHHHHHHhCCCc--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 263 EALTYRV-GHHTTSDDSTKYRPVDEIEWWRTTQDP--VTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 263 e~~t~R~-~gHs~~dd~~~Yr~~~e~~~~~~~~dP--i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
.++|+-. +|=.+.-=.-.+=+++-++.+.+.+.| +..+...+...-+-+++.+++..+.+..+-+.-.++.++.|
T Consensus 206 vlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 206 VLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG 283 (356)
T ss_pred EEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888643 332221101011356667777666777 66777777766666778888888888888888888888776
No 256
>PRK13683 hypothetical protein; Provisional
Probab=57.28 E-value=15 Score=28.30 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=30.8
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCC
Q 019322 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (343)
Q Consensus 227 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 270 (343)
+-+.+.+=+-.|.+++|.-+..|++ .+.|.+||..|.+..
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~~ 52 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKVE 52 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcC
Confidence 3445555556688899999998886 478999999998754
No 257
>PRK10490 sensor protein KdpD; Provisional
Probab=56.19 E-value=50 Score=36.47 Aligned_cols=94 Identities=12% Similarity=-0.041 Sum_probs=56.5
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE-EEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHH
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v-v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 243 (343)
+++.||+.|. ..++-.+..+..+|.+.+.|++.+ |+.............. ..+..+.|+.+|..+..+.|.|+.+
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~-l~~~~~lA~~lGa~~~~~~~~dva~-- 326 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRA-ILSALRLAQELGAETATLSDPAEEK-- 326 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHH-HHHHHHHHHHcCCEEEEEeCCCHHH--
Confidence 3456666555 556678889999999999986544 4333222111111111 1123368999999999999998753
Q ss_pred HHHHHHHHHhhccCCcEEEEEEE
Q 019322 244 SAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 244 ~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
...++||..+-..+|--+.
T Consensus 327 ----~i~~~A~~~~vt~IViG~s 345 (895)
T PRK10490 327 ----AVLRYAREHNLGKIIIGRR 345 (895)
T ss_pred ----HHHHHHHHhCCCEEEECCC
Confidence 2334555555555555444
No 258
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=53.85 E-value=1.4e+02 Score=25.51 Aligned_cols=71 Identities=25% Similarity=0.165 Sum_probs=42.5
Q ss_pred CeEEEEeCccccCcch--H----HHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCH
Q 019322 166 ACAVTYFGDGGTSEGD--F----HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~--~----~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 239 (343)
+.+++++.||.-+.|. . .+....+...+++++.|-. ... .....-+..+|+.-|..++.++--+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~-~~~--------~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDT-EGR--------PVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeC-CCC--------ccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5799999999887543 1 3334445566667655421 110 00112366788888999999885555
Q ss_pred HHHHHH
Q 019322 240 LAIYSA 245 (343)
Q Consensus 240 ~~v~~a 245 (343)
.++..+
T Consensus 170 ~~~~~~ 175 (178)
T cd01451 170 DAIASA 175 (178)
T ss_pred HHHHHH
Confidence 554443
No 259
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=53.53 E-value=44 Score=34.59 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEc
Q 019322 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (343)
Q Consensus 149 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~n 202 (343)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.
T Consensus 60 ~~aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 60 GFLALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 34566666553 3334566666888886 345677888889999999754
No 260
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=46.85 E-value=1.1e+02 Score=27.30 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=44.9
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCC--EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCH---H
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA---L 240 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~---~ 240 (343)
+++|.+.|+|+..+. +.++ ...-.++ |++||.|+.- ....++|...|+|++.++-.+. .
T Consensus 3 ki~vl~sg~gs~~~~-ll~~---~~~~~~~~~I~~vvs~~~~------------~~~~~~a~~~gIp~~~~~~~~~~~~~ 66 (200)
T PRK05647 3 RIVVLASGNGSNLQA-IIDA---CAAGQLPAEIVAVISDRPD------------AYGLERAEAAGIPTFVLDHKDFPSRE 66 (200)
T ss_pred eEEEEEcCCChhHHH-HHHH---HHcCCCCcEEEEEEecCcc------------chHHHHHHHcCCCEEEECccccCchh
Confidence 578889999888542 2222 2222343 5666666531 1245788899999998763332 2
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 241 AIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 241 ~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
.....+.+.++ . ..|-+|.+..|
T Consensus 67 ~~~~~~~~~l~---~-~~~D~iv~~~~ 89 (200)
T PRK05647 67 AFDAALVEALD---A-YQPDLVVLAGF 89 (200)
T ss_pred HhHHHHHHHHH---H-hCcCEEEhHHh
Confidence 22233333332 1 35666666555
No 261
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=45.01 E-value=1.5e+02 Score=32.93 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=63.0
Q ss_pred cCchHHHHHHHHhcccccCCCeEEE--EeCccccC-cchHHHHHHH-HHhCCC--CEEEEEEcCCCccccccccccCCcc
Q 019322 146 ATQLPHAVGAAYALKMDRKDACAVT--YFGDGGTS-EGDFHAALNF-SAVTEA--PVIFICRNNGWAISTPISDQFRSDG 219 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~~~~~~vv~--~~GDG~~~-eG~~~Eal~~-A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~ 219 (343)
.+-++.++|+|+. +++.++|+ -+||=+.. |-.+-+=++. ++.|+. ++|+.+ -.+|....+...+-..+.
T Consensus 657 ~a~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~-p~G~~g~g~~hsS~~~E~ 731 (929)
T TIGR00239 657 ESVLGFEYGYATT----SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLL-PHGYEGQGPEHSSGRLER 731 (929)
T ss_pred HHHHHHHHhHHhc----CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEe-cCcCCCCCchhhccCHHH
Confidence 4456777888775 45665444 45554431 1225555666 567764 766554 444655544333322333
Q ss_pred HHHhHhhcCceEEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEE
Q 019322 220 AVVKGRAYGVRSIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEA 264 (343)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~d~~~v~~a~~-~a~~~~r~~~gP~lIe~ 264 (343)
+...+.--|+.++... .|.+.+-.++ .|+. ..++|+++--
T Consensus 732 ~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~~ 772 (929)
T TIGR00239 732 FLQLAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVMS 772 (929)
T ss_pred HHHHhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEec
Confidence 3333444578777766 8888888888 4653 3478988844
No 262
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.90 E-value=1.4e+02 Score=28.23 Aligned_cols=83 Identities=10% Similarity=0.051 Sum_probs=47.5
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhC-CC--CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCC-
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND- 238 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d- 238 (343)
.+.+++|+..|.|+. .++|--+... .+ -|+.|+.|+. +...+|+.+|+|++.++-.+
T Consensus 88 ~~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~~~~ 148 (286)
T PRK06027 88 ERKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPVTKE 148 (286)
T ss_pred cCcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEeccCcc
Confidence 345677777777655 3555544433 34 4677777662 45567999999999875331
Q ss_pred -HHHHHHHHHHHHHHhhccCCcEEEEEEEec
Q 019322 239 -ALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (343)
Q Consensus 239 -~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 268 (343)
..+....+.+.++ + ..|-+|.+-.|.
T Consensus 149 ~~~~~~~~~~~~l~---~-~~~Dlivlagy~ 175 (286)
T PRK06027 149 TKAEAEARLLELID---E-YQPDLVVLARYM 175 (286)
T ss_pred ccchhHHHHHHHHH---H-hCCCEEEEecch
Confidence 2222223333332 2 357666666553
No 263
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.35 E-value=95 Score=29.55 Aligned_cols=54 Identities=6% Similarity=-0.123 Sum_probs=37.4
Q ss_pred CCCeEEEEeCccccCcchHHHHHHHHHhCC-C--CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeC
Q 019322 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (343)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (343)
+.+++|.+.|.|+.. +++-.+...+ + -++.|+.||. +..++|+.+|+|++.++-
T Consensus 93 ~~kiavl~Sg~g~nl-----~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHCL-----NDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCccH-----HHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 456788888877664 5565655543 4 4677787763 345789999999998763
No 264
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=44.15 E-value=52 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=26.5
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE---EEcCCCcc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWAI 207 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v---v~nN~~~~ 207 (343)
...+++-|||++. .+..++..+++|+|.| |+||-.+.
T Consensus 93 d~Li~IGGdgs~~-----~a~~L~e~~~i~vigiPkTIDNDl~~t 132 (301)
T TIGR02482 93 EGLVVIGGDGSYT-----GAQKLYEEGGIPVIGLPGTIDNDIPGT 132 (301)
T ss_pred CEEEEeCCchHHH-----HHHHHHHhhCCCEEeecccccCCCcCc
Confidence 4688899999885 2344444578999998 88886543
No 265
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=43.57 E-value=1.1e+02 Score=27.57 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=34.2
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhC-CC--CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCC
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~-~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (343)
++|.+.|-|+-. +++--+... ++ -+++||.||... ...++|+.+|+|++.++-.
T Consensus 2 i~vl~Sg~Gsn~-----~al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVSGGGSNF-----RAIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeCCChhH-----HHHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEeccc
Confidence 567777777664 445444433 34 467778787421 2356788899999887643
No 266
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=43.43 E-value=56 Score=26.00 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=17.7
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEE
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (343)
+..++++.-.|... ...+.+..|...+.|+|.|..
T Consensus 54 ~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT~ 88 (131)
T PF01380_consen 54 DDLVIIISYSGETR--ELIELLRFAKERGAPVILITS 88 (131)
T ss_dssp TEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEES
T ss_pred cceeEeeeccccch--hhhhhhHHHHhcCCeEEEEeC
Confidence 34455555455443 345555555555555554443
No 267
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=42.88 E-value=87 Score=30.61 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 019322 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (343)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~gP~lIe~~ 265 (343)
...|++++++..--...+|- .|..|..++++|+...|.+ .||+||+.-
T Consensus 115 qavdi~~ia~pv~kwavtv~--epalvp~v~qkafhlmrs~rpgpvlidlp 163 (592)
T COG3960 115 QAVDIEAIAKPVSKWAVTVR--EPALVPRVLQQAFHLMRSGRPGPVLIDLP 163 (592)
T ss_pred hhhhHHHhhhhhhhhhhhhc--chhhhHHHHHHHHHHHhcCCCCCeEEecc
Confidence 34456666654422233343 7888999999999888876 489999764
No 268
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=41.65 E-value=97 Score=27.93 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=50.5
Q ss_pred ccCCCeEEEEeCcccc--CcchHHHHHHHHHhCCC-CEEEEEE--cCCCccccccccccCCccHHHhHhhcCceEEEEe
Q 019322 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
..|+.+.....=||.+ -.|..--++.+|..-++ |.-+||+ |..- .....+++.+.|+-+|++++++.
T Consensus 121 ~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi~~~dG-------~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 121 RRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDG-------TMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred CCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEEeCCCc-------cccChHHHHHHHHHcCCcEEEHH
Confidence 4577888888888887 47888889999999999 8766655 3311 12234578889999999999876
No 269
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=41.34 E-value=1.1e+02 Score=28.11 Aligned_cols=69 Identities=7% Similarity=0.011 Sum_probs=44.5
Q ss_pred CEEEEEEcCCCccccccccc--cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 195 PVIFICRNNGWAISTPISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 195 pvi~vv~nN~~~~~~~~~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.+.+||+|..|.-.. .... .....+.+.++.+|+.+....--+..++.+++++..+.....+..+++-+
T Consensus 9 g~alII~n~~f~~~~-~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 9 GLALIINNENFHSLP-RRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred cEEEEEECccCCCCc-CCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 467788887885321 1111 11235778889999999998877888999988886553222234555544
No 270
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=41.33 E-value=1.5e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCC
Q 019322 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (343)
Q Consensus 187 ~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (343)
..|...++|+++++.++. ...-....+.+|..++.+++.
T Consensus 67 ~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 67 AAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 345567889988887653 112335677889999999875
No 271
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=38.44 E-value=2.8e+02 Score=26.16 Aligned_cols=81 Identities=7% Similarity=0.009 Sum_probs=46.7
Q ss_pred CCCeEEEEeCccccCcchHHHHHHHHHhCC-C--CEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCC--
Q 019322 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND-- 238 (343)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d-- 238 (343)
+.+++|.+.|-|+.. +++--+...+ + .++.|+.|| ++...+|+.+|+|++.++-.+
T Consensus 84 ~~ki~vl~Sg~g~nl-----~~l~~~~~~g~l~~~i~~visn~--------------~~~~~~A~~~gIp~~~~~~~~~~ 144 (280)
T TIGR00655 84 LKRVAILVSKEDHCL-----GDLLWRWYSGELDAEIALVISNH--------------EDLRSLVERFGIPFHYIPATKDN 144 (280)
T ss_pred CcEEEEEEcCCChhH-----HHHHHHHHcCCCCcEEEEEEEcC--------------hhHHHHHHHhCCCEEEcCCCCcc
Confidence 456777777776653 4555554433 4 467777776 234557889999999887432
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 239 ALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 239 ~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
-.+....+.+.++ + ..|-+|.+-.|
T Consensus 145 ~~~~e~~~~~~l~---~-~~~Dlivlagy 169 (280)
T TIGR00655 145 RVEHEKRQLELLK---Q-YQVDLVVLAKY 169 (280)
T ss_pred hhhhHHHHHHHHH---H-hCCCEEEEeCc
Confidence 1222233333332 2 35666655544
No 272
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=38.42 E-value=1.7e+02 Score=30.85 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=58.8
Q ss_pred ccCchHHHHHHHHhcccc-----cCCCeEEEEeCccccCcch---------HHHHHHHHHh---CCCCEEEEEEcCCCcc
Q 019322 145 IATQLPHAVGAAYALKMD-----RKDACAVTYFGDGGTSEGD---------FHAALNFSAV---TEAPVIFICRNNGWAI 207 (343)
Q Consensus 145 lG~~lp~A~G~A~a~k~~-----~~~~~vv~~~GDG~~~eG~---------~~Eal~~A~~---~~Lpvi~vv~nN~~~~ 207 (343)
-|.+-|++-|+..|.+.. ....++++++-||..+.|. ..+++..|.. .++++++|-.-+.
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~--- 548 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR--- 548 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC---
Confidence 456677777776665431 2236889999999987543 2445555444 3455554422111
Q ss_pred ccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHH
Q 019322 208 STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (343)
Q Consensus 208 ~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a 249 (343)
......++|+..|..++.++--+...+..+++.+
T Consensus 549 --------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 --------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred --------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123667899999999999877888877766544
No 273
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=38.18 E-value=2.7e+02 Score=25.16 Aligned_cols=94 Identities=17% Similarity=0.038 Sum_probs=48.9
Q ss_pred hHHHHHHHHhccccc---CCCeEEEEeCccccCcc-hHH-HHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHh
Q 019322 149 LPHAVGAAYALKMDR---KDACAVTYFGDGGTSEG-DFH-AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVK 223 (343)
Q Consensus 149 lp~A~G~A~a~k~~~---~~~~vv~~~GDG~~~eG-~~~-Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~ 223 (343)
++.|+..+...--.. -.++|+-+.|||--++| .-. .+-..+...++ + =|+..|....... ..++...
T Consensus 97 ig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi--t----INgL~I~~~~~~~--~~~L~~y 168 (205)
T PF06707_consen 97 IGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI--T----INGLAILDDDPFG--GADLDAY 168 (205)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCe--E----EeeeEecCCCCCc--cccHHHH
Confidence 444554444332222 35799999999999999 333 22223333333 1 1333333222111 1145555
Q ss_pred Hhhc--CceE-EEEeCCCHHHHHHHHHHHH
Q 019322 224 GRAY--GVRS-IRVDGNDALAIYSAVHAAR 250 (343)
Q Consensus 224 a~a~--G~~~-~~VdG~d~~~v~~a~~~a~ 250 (343)
.+.+ |-|+ |.+...+..+..+|+++-+
T Consensus 169 y~~~VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 169 YRRCVIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred HhhhcccCCCceEEEcCCHHHHHHHHHHHH
Confidence 4443 4444 5556668888888877643
No 274
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=38.17 E-value=52 Score=25.06 Aligned_cols=36 Identities=3% Similarity=-0.034 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 019322 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILV 329 (343)
Q Consensus 294 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 329 (343)
++-|.-+-+.|++.++++++|.+.|.++.....++|
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dka 50 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKA 50 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHH
Confidence 566777889999999999999999988643333333
No 275
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.58 E-value=2e+02 Score=29.18 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCCEEEEEEcCCCccccccccccCCccHHHhH-----hhcCceEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEEE
Q 019322 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKG-----RAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALT 266 (343)
Q Consensus 193 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a-----~a~G~~~~~VdG~d~~~v~~a~~~a~~~~-r~~~gP~lIe~~t 266 (343)
++|+++|=.+.+|...+. |++.+. +-..|.++.||.-.-..+...++.|.... -...-|.+-++
T Consensus 366 ~IPLtvVKSDGGftYdts--------DlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld~~~~RV~Hv-- 435 (656)
T KOG4426|consen 366 DIPLTVVKSDGGFTYDTS--------DLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLDPTYPRVEHV-- 435 (656)
T ss_pred CcceEEEecCCCcccccc--------hHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccCCCccceeee--
Confidence 457777777777666543 333221 33468888887544444444444443210 00011222111
Q ss_pred ecCCCCCCCCCCCCCCCH--HHHHHHHhCCCcHHHHHHHHHHcC---CCCHHHHHHHHHH
Q 019322 267 YRVGHHTTSDDSTKYRPV--DEIEWWRTTQDPVTRFRKWIESNG---WWNGDIESELRSS 321 (343)
Q Consensus 267 ~R~~gHs~~dd~~~Yr~~--~e~~~~~~~~dPi~~~~~~L~~~g---~~~~~~~~~i~~~ 321 (343)
..|---+||...+|++ +-++-..--..-.+|-...|+++| .||++|+++..+.
T Consensus 436 --gFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~ea 493 (656)
T KOG4426|consen 436 --GFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEA 493 (656)
T ss_pred --eeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 1123345677777654 323221111235567788888887 6899999876553
No 276
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=37.53 E-value=38 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.200 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 019322 297 VTRFRKWIESNGWWNGDIESELRSSVR 323 (343)
Q Consensus 297 i~~~~~~L~~~g~~~~~~~~~i~~~~~ 323 (343)
+..+-++|+++|++|+++.+.|+.+-.
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t 42 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKAT 42 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCC
Confidence 345779999999999999999987543
No 277
>PRK11032 hypothetical protein; Provisional
Probab=37.38 E-value=1e+02 Score=26.69 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019322 297 VTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISK 335 (343)
Q Consensus 297 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~ 335 (343)
|...++++.+.|-+|++|++.+.+-++..+++..+..++
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~ 68 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEE 68 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999999999999988765443
No 278
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=37.06 E-value=1.9e+02 Score=24.34 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCeEEEEeCccccCcch--HHHHHHHHHhCCCCEEEEEEcCCCcccccccc-ccCCccHHHhHhhcCceEEEEe
Q 019322 165 DACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~--~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
.+.+++++.||....|. ..++...+...+++|..|-.-+......+... .....-+..+|..-|...+.+.
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~ 175 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRAL 175 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEec
Confidence 35789999999876653 33555666667777765544332211111100 0111124455665666666554
No 279
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=36.13 E-value=3e+02 Score=26.63 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEe-CCCHHHHH
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD-GNDALAIY 243 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd-G~d~~~v~ 243 (343)
+.-+++.+ |+.+...+......|++.++..|++++|-- . .-..+.++ -+..-+|..+.-+| |.|+. +.
T Consensus 63 g~dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~------~y~~ngn~-Ll~~l~G~~~~~~~~~~d~~-~~ 131 (323)
T COG2515 63 GADTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A------NYLLNGNL-LLSKLMGAEVRAVDAGTDIG-IN 131 (323)
T ss_pred CCcEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c------ccccccch-hhhhhcCceEEEecCCCChh-hc
Confidence 33355555 577767788888889999999999998754 0 00011111 13344688888886 45652 33
Q ss_pred HHHHHHHHHh-hccCCcEEEEEEEecCCC-CCCCCCCCCC-CCHHHHHHHHh
Q 019322 244 SAVHAAREMA-IGEGRPILIEALTYRVGH-HTTSDDSTKY-RPVDEIEWWRT 292 (343)
Q Consensus 244 ~a~~~a~~~~-r~~~gP~lIe~~t~R~~g-Hs~~dd~~~Y-r~~~e~~~~~~ 292 (343)
.-++...+.+ +++++|.+|- -+| |..+ .-.| +-..|+..|.+
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp-----~GG~~~~g--~lGyv~~a~Ei~~Q~~ 176 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIP-----EGGSSPLG--ALGYVRLALEIAEQAE 176 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEec-----cCCcCccc--cccHHHHHHHHHHHHh
Confidence 3333333333 3478898884 455 3322 2346 55578877753
No 280
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=35.59 E-value=81 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=29.3
Q ss_pred CCeEEEEeCccccCcchH--------HHHHHHHHhCCCCEEEEEEcCCCcc
Q 019322 165 DACAVTYFGDGGTSEGDF--------HAALNFSAVTEAPVIFICRNNGWAI 207 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~--------~Eal~~A~~~~Lpvi~vv~nN~~~~ 207 (343)
++.|+++.=|-.+..|.+ ..++.+|...++|+|++++..+..+
T Consensus 119 G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRm 169 (285)
T TIGR00515 119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARM 169 (285)
T ss_pred CEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCccc
Confidence 456666666744443332 3456778889999999998888654
No 281
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=35.18 E-value=82 Score=28.20 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=47.2
Q ss_pred ccCCCeEEEEeCcccc--CcchHHHHHHHHHhCCC-CEEEEEE--cCCCccccccccccCCccHHHhHhhcCceEEEEe
Q 019322 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
..|+.+..+...+|.+ ..|...-++.++..-++ |+-++|+ |.. ......+++.++|+.+|++.+.++
T Consensus 117 ~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~eil~~d-------G~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 117 VRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICEILDDD-------GDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp EEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEEBBETT-------SSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEEEeCCC-------CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 3466777777778887 46999999999999999 8766654 221 122334578889999999999876
No 282
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=35.18 E-value=2.1e+02 Score=25.77 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=49.0
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCC-CC--EEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCC---H
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND---A 239 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d---~ 239 (343)
+.+|.+.|-||-. +++--|..-+ +| +..|+.|+. ...-.++|+.+|+|...++-.+ -
T Consensus 2 ki~VlaSG~GSNl-----qaiida~~~~~~~a~i~~Visd~~------------~A~~lerA~~~gIpt~~~~~k~~~~r 64 (200)
T COG0299 2 KIAVLASGNGSNL-----QAIIDAIKGGKLDAEIVAVISDKA------------DAYALERAAKAGIPTVVLDRKEFPSR 64 (200)
T ss_pred eEEEEEeCCcccH-----HHHHHHHhcCCCCcEEEEEEeCCC------------CCHHHHHHHHcCCCEEEeccccCCCH
Confidence 4577777777664 4555555433 33 666776652 1224468888999988876433 3
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 240 LAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
++...++.++++ ..+|-+|.+--|
T Consensus 65 ~~~d~~l~~~l~----~~~~dlvvLAGy 88 (200)
T COG0299 65 EAFDRALVEALD----EYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEcch
Confidence 456666666665 356766655443
No 283
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=35.01 E-value=2.6e+02 Score=26.15 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
....++.+|+++......++++..+.++++++ .+.|++|-+.+|
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~ 98 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMY 98 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEeccc
Confidence 44667778999998888899999999999887 368999998875
No 284
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=34.98 E-value=2.2e+02 Score=22.22 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=32.7
Q ss_pred cCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHH
Q 019322 177 TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (343)
Q Consensus 177 ~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~ 240 (343)
.++-.+..+.++|..++-++.++...+.-..............+.+.++..+++...+.+.++.
T Consensus 11 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 74 (124)
T cd01987 11 NAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVA 74 (124)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHH
Confidence 3344566667777777777644433222110000000001123456677788888777776753
No 285
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=34.84 E-value=1.1e+02 Score=30.48 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=8.6
Q ss_pred HHHHhCCCCEEEEE
Q 019322 187 NFSAVTEAPVIFIC 200 (343)
Q Consensus 187 ~~A~~~~Lpvi~vv 200 (343)
.+|.+++.+++.+-
T Consensus 97 ~ia~~~g~~v~~~~ 110 (383)
T COG0075 97 EIAERYGAEVVVLE 110 (383)
T ss_pred HHHHHhCCceEEEe
Confidence 36667777665553
No 286
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=34.05 E-value=3.5e+02 Score=25.08 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHhcccccCCCeEEEEeCccccCcchHHHHHHHHHh-CCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEE
Q 019322 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV 234 (343)
Q Consensus 156 A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~-~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V 234 (343)
.+|..+...+...+.+..|-.+..|. .+-+..+.. -++||+. -| |-+. +.-...+..+|...+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~--kd--fi~~---------~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLR--KD--FIID---------PYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEe--ee--ecCC---------HHHHHHHHHcCCCEEEE
Confidence 34444444556677887777776555 344555443 5789884 11 2111 11234566678888888
Q ss_pred eCCC--HHHHHHHHHHHHHHhhccCCcEEEEEEEe
Q 019322 235 DGND--ALAIYSAVHAAREMAIGEGRPILIEALTY 267 (343)
Q Consensus 235 dG~d--~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 267 (343)
++.+ +..+.+.++ +++.-+.-+++|+.+.
T Consensus 140 i~~~l~~~~l~~li~----~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDDEQLKELLD----YAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCHHHHHHHHH----HHHHcCCeEEEEeCCH
Confidence 7766 334444444 4434467777777664
No 287
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=34.02 E-value=3.1e+02 Score=30.61 Aligned_cols=107 Identities=8% Similarity=0.052 Sum_probs=62.7
Q ss_pred cCchHHHHHHHHhcccccCCC--eEEEEeCcccc-CcchHHHHHHHH-HhCCC--CEEEEEEcCCCccccccccccCCcc
Q 019322 146 ATQLPHAVGAAYALKMDRKDA--CAVTYFGDGGT-SEGDFHAALNFS-AVTEA--PVIFICRNNGWAISTPISDQFRSDG 219 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~~~~~--~vv~~~GDG~~-~eG~~~Eal~~A-~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~ 219 (343)
.+-++.++|+|+. +++. ++=.-+||=+. .|-.+-+-++.+ +.|+. ++|+.+-. +|...++...+ ..
T Consensus 655 ~~~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~-G~~g~g~~hsS---~~ 726 (924)
T PRK09404 655 EAVLGFEYGYSTA----EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPH-GYEGQGPEHSS---AR 726 (924)
T ss_pred HHHHHHHHHHHhc----CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecC-cCCCCChhhhc---cC
Confidence 4446777788775 4554 44455666544 123355666765 67765 76655544 45544433222 23
Q ss_pred HHHhHhhc---CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 220 AVVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 220 ~~~~a~a~---G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
+......+ |+.++... .|.+.+-.++.++. |...+|+++--
T Consensus 727 ~E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~~--r~~r~Pvv~~~ 770 (924)
T PRK09404 727 LERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQAL--RPFRKPLVVMT 770 (924)
T ss_pred HHHHHHhCCCCCCEEEecC--CHHHHHHHHHHHHh--hCCCCCEEEec
Confidence 44444434 88887766 88888888887542 23458988754
No 288
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.37 E-value=1.2e+02 Score=28.22 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 019322 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPI 260 (343)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~gP~ 260 (343)
+.+.+..++..+.. +=|+.+++.. +.....+...+.++++.+|+++. .-|.|++.+|-..+.+|.+.+++.+-+.
T Consensus 179 ~~~il~~~~~~g~~--lEiNt~~~r~--~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~ 254 (269)
T PRK07328 179 YEEALDVIAAAGLA--LEVNTAGLRK--PVGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTE 254 (269)
T ss_pred HHHHHHHHHHcCCE--EEEEchhhcC--CCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcE
Confidence 45566666666643 2233333322 22334566779999999999843 3488999999888888888887766444
Q ss_pred EE
Q 019322 261 LI 262 (343)
Q Consensus 261 lI 262 (343)
+.
T Consensus 255 ~~ 256 (269)
T PRK07328 255 TV 256 (269)
T ss_pred EE
Confidence 43
No 289
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.36 E-value=1.5e+02 Score=23.55 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=8.9
Q ss_pred HHHhHhhcCceEEEEeC
Q 019322 220 AVVKGRAYGVRSIRVDG 236 (343)
Q Consensus 220 ~~~~a~a~G~~~~~VdG 236 (343)
..+.++..|++++.+.+
T Consensus 66 ~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 66 LLPHLKRRGAPIIAITG 82 (128)
T ss_pred HHHHHHHCCCeEEEEeC
Confidence 44455555555555543
No 290
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=33.04 E-value=4.1e+02 Score=29.59 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=72.3
Q ss_pred CcccccccccCchH---HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCC-ccccccc
Q 019322 137 NYFTVSSTIATQLP---HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS 212 (343)
Q Consensus 137 ~~~~~~g~lG~~lp---~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~ 212 (343)
+=+...|+-.+++- +|+|.|++.. +...+++ ++.=..|...-.+|-+..++..++++++|...-+. .....
T Consensus 560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~--G~g~iPf-~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~e-- 634 (889)
T TIGR03186 560 GQILEEGISEAGAISSWIAAATSYSVH--DLPMLPF-YIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGE-- 634 (889)
T ss_pred CcEEEechhhHHHHHHHHHHHHhhhhc--CCCceEE-EEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCC--
Confidence 33445566666655 5888888742 2221233 23334554445678888898888999999887765 34322
Q ss_pred cccCCccHHHhHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhcc--CCcEEEEE
Q 019322 213 DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGE--GRPILIEA 264 (343)
Q Consensus 213 ~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~--~gP~lIe~ 264 (343)
..+..++.+.+-.-.+|...| +=-|..++..+++.+++++-.. ++|+.|-+
T Consensus 635 -G~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 635 -GLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred -cccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 222234445554445554432 4458888888888888754433 46777654
No 291
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=32.53 E-value=2.7e+02 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=29.1
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHh--------CCCCEEEEEEcCCCccc
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAIS 208 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~ 208 (343)
+...++++||-.-.+=-+-|++.+|.. .|-|||+||+.-+-+++
T Consensus 28 ~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g 79 (234)
T PF06833_consen 28 DGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG 79 (234)
T ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc
Confidence 456778888766543346677777743 34599999986654444
No 292
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=32.50 E-value=1.5e+02 Score=27.13 Aligned_cols=69 Identities=9% Similarity=0.007 Sum_probs=44.3
Q ss_pred CEEEEEEcCCCccccccccc--cCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 195 PVIFICRNNGWAISTPISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 195 pvi~vv~nN~~~~~~~~~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.+.+||.|..|.-..+.... .....+++.++.+|+.+....--+..++.+++++..+ .+..+.-+++-+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~-~~~~~~d~~v~~ 80 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS-PDHSDSDSFVCV 80 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh-ccCCCCCeeEEE
Confidence 47778888777641111111 1123578889999999999887788899999988764 122334455433
No 293
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=32.48 E-value=3.4e+02 Score=23.73 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=28.7
Q ss_pred CeEEEEeCccccC-cchHHHHHHHHHhCCCCEEEEEE
Q 019322 166 ACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 166 ~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~ 201 (343)
++.+.++|.|... ....-+...+|..+++|++.-..
T Consensus 35 KrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 35 KRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 5678888999986 66677788899999999876654
No 294
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=32.16 E-value=53 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCCHHHHHHHH
Q 019322 300 FRKWIESNGWWNGDIESELR 319 (343)
Q Consensus 300 ~~~~L~~~g~~~~~~~~~i~ 319 (343)
+++-++++|++|+++++++-
T Consensus 28 vre~v~~~g~lt~ee~d~ll 47 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDELL 47 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHc
Confidence 56778899999999998763
No 295
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=32.01 E-value=1.2e+02 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 019322 298 TRFRKWIESNGWWNGDIESELRSSVRKQVIL 328 (343)
Q Consensus 298 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (343)
.-|++.|.++|+ ++++|++--++.+..+.+
T Consensus 14 ~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 14 LELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 458999999997 999998887777776654
No 296
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.56 E-value=95 Score=26.49 Aligned_cols=40 Identities=3% Similarity=0.100 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019322 296 PVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISK 335 (343)
Q Consensus 296 Pi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~ 335 (343)
-+...++++.+.|-+|++|++.+.+-++..+++..+....
T Consensus 19 ~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 19 ALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999998877665
No 297
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=31.34 E-value=1.4e+02 Score=26.80 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=47.4
Q ss_pred ccCCCeEEEEeCcccc--CcchHHHHHHHHHhCCC-CEEEEEE--cCCCccccccccccCCccHHHhHhhcCceEEEEe
Q 019322 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
..|+.+.....-+|.+ -.|..--++.++..-++ |+-++|+ |.. ......+++.++|+.+|+|.+.++
T Consensus 122 ~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~d-------G~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 122 RRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDD-------GTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCCC-------CCccCHHHHHHHHHHcCCcEEEHH
Confidence 3567766677767776 47888888889999998 8765554 321 112334578889999999998765
No 298
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=31.01 E-value=58 Score=25.48 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 019322 295 DPVTRFRKWIESNGWWNGDIESELRSSVRK 324 (343)
Q Consensus 295 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~ 324 (343)
.++..+-+.|.++|++|+++.+.|+.+...
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~~t~ 52 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQKTQT 52 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcCCCh
Confidence 345556799999999999999999876544
No 299
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=30.88 E-value=1.3e+02 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=25.5
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE---EEcCCCccc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWAIS 208 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v---v~nN~~~~~ 208 (343)
...+++-|||++.. .+.-+.+++|+|.| |+||-++.+
T Consensus 94 d~Li~IGGdgs~~~------a~~L~e~~i~vigiPkTIDNDi~gtd 133 (317)
T cd00763 94 DALVVIGGDGSYMG------AMRLTEHGFPCVGLPGTIDNDIPGTD 133 (317)
T ss_pred CEEEEECCchHHHH------HHHHHHcCCCEEEecccccCCCCCCc
Confidence 46889999999852 22223358999988 888866543
No 300
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=30.63 E-value=1.8e+02 Score=20.80 Aligned_cols=46 Identities=4% Similarity=0.033 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC-CcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 019322 284 VDEIEWWRTTQ-DPVTRFRKWIESNGWWNGDIESELRSSVRKQVILV 329 (343)
Q Consensus 284 ~~e~~~~~~~~-dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 329 (343)
..|++.|.++. +--+.+-+..++.|.+|.+.-+.|++.+....+..
T Consensus 6 k~el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 6 KKELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 35666664211 12234556678999999999999998877765544
No 301
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.39 E-value=1.3e+02 Score=23.30 Aligned_cols=25 Identities=0% Similarity=0.056 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Q 019322 297 VTRFRKWIESNGWWNGDIESELRSS 321 (343)
Q Consensus 297 i~~~~~~L~~~g~~~~~~~~~i~~~ 321 (343)
+..+..+|+++|++|++..+.|++.
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 3457799999999999999999775
No 302
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.01 E-value=3.6e+02 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=22.6
Q ss_pred EEEeCcccc--CcchHHHHHHHHHhC---CCCEEEEEEcC
Q 019322 169 VTYFGDGGT--SEGDFHAALNFSAVT---EAPVIFICRNN 203 (343)
Q Consensus 169 v~~~GDG~~--~eG~~~Eal~~A~~~---~Lpvi~vv~nN 203 (343)
+.|--||+. ..|.++-++.+|..+ +..++|++.+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 445556666 466777777777755 23677777654
No 303
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=29.92 E-value=60 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 019322 296 PVTRFRKWIESNGWWNGDIESELRSSV 322 (343)
Q Consensus 296 Pi~~~~~~L~~~g~~~~~~~~~i~~~~ 322 (343)
.+..+-+.|..+|++|+++.+.|+++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 456667999999999999999998764
No 304
>PRK06988 putative formyltransferase; Provisional
Probab=29.83 E-value=2.9e+02 Score=26.36 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=35.7
Q ss_pred EEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEe
Q 019322 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
-++|+|.+.+.. .+|..-...+..++.|+.+..-. . .......+.++|..+|+|++..+
T Consensus 4 kIvf~Gs~~~a~----~~L~~L~~~~~~i~~Vvt~~d~~----~-~~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 4 RAVVFAYHNVGV----RCLQVLLARGVDVALVVTHEDNP----T-ENIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEEeCcHHHH----HHHHHHHhCCCCEEEEEcCCCCC----c-cCcCCCHHHHHHHHcCCcEEccc
Confidence 378889988752 33444334456777776543111 0 11223468889999999998744
No 305
>PLN02522 ATP citrate (pro-S)-lyase
Probab=29.52 E-value=3.1e+02 Score=29.02 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=53.5
Q ss_pred cCCCeEEEEeCc-cccCcchHHHHHHHHHhCCCCEEEEEEcCCCc---c---ccccccccCCcc------HHHhHhhcCc
Q 019322 163 RKDACAVTYFGD-GGTSEGDFHAALNFSAVTEAPVIFICRNNGWA---I---STPISDQFRSDG------AVVKGRAYGV 229 (343)
Q Consensus 163 ~~~~~vv~~~GD-G~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~---~---~~~~~~~~~~~~------~~~~a~a~G~ 229 (343)
.++-.+|+++|+ |.-.+-.|.|++.-+. .+-|||.++---.-. - ..++ ......+ ....++.+|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHt-GAiag~~~~ta~~k~aAlr~aGv 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHA-GAKSGGDMESAQAKNKALKDAGA 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccc-cccccCCCccHHHHHHHHHHCCC
Confidence 356689999999 8887766777665544 567998887432110 0 0000 0111112 4455677787
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIG 255 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~ 255 (343)
... + +++++.++++++++....
T Consensus 298 ~vv--~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 298 IVP--T--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred eEe--C--CHHHHHHHHHHHHHHHHh
Confidence 554 4 999999999998876543
No 306
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=29.49 E-value=1.3e+02 Score=27.95 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcC
Q 019322 181 DFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
.-+.++.-|+..++|+|-+|+-|
T Consensus 129 ~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred cchHHHHHHHHhCCCEEEEecCC
Confidence 45678999999999999999866
No 307
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=29.18 E-value=5.2e+02 Score=27.50 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=39.3
Q ss_pred hHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCC
Q 019322 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (343)
Q Consensus 223 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~d 276 (343)
.++...+|++.=- |+.+.++..+.|++..+..+-|+++-+.| |. .|+.++
T Consensus 134 y~~~a~iPvLeP~--d~Qea~d~~~~afelSe~~~~pVilr~tt-r~-~h~~~~ 183 (640)
T COG4231 134 YGKFALIPVLEPS--DPQEAYDYVKYAFELSEKSGLPVILRTTT-RV-SHSRGD 183 (640)
T ss_pred HHHhcCceeecCC--ChHHHHHHHHHHHHHHHHhCCCEEEEEEe-ee-ecccee
Confidence 4555578887544 99999999999999999999999999887 43 455543
No 308
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.65 E-value=63 Score=24.76 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Q 019322 298 TRFRKWIESNGWWNGDIESELRSS 321 (343)
Q Consensus 298 ~~~~~~L~~~g~~~~~~~~~i~~~ 321 (343)
..+..+|+++|++|.+..+.|+.+
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~ 42 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAA 42 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcC
Confidence 447799999999999999998764
No 309
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=28.60 E-value=1.5e+02 Score=29.69 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=24.4
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhC--CCCEEEE---EEcCCCcc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFI---CRNNGWAI 207 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~v---v~nN~~~~ 207 (343)
...+++-|||++... +.-...+..+ ++|+|-| |+|+-++.
T Consensus 114 d~Li~IGGdgS~~~a--~~L~~~~~~~g~~i~vvgIPkTIDNDl~~t 158 (403)
T PRK06555 114 DILHTIGGDDTNTTA--ADLAAYLAENGYDLTVVGLPKTIDNDVVPI 158 (403)
T ss_pred CEEEEECChhHHHHH--HHHHHHHHHhCCCceEEEeeeeeeCCCCCc
Confidence 468899999998521 1111122223 6798888 88876443
No 310
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=28.52 E-value=1.1e+02 Score=29.16 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCeEEEEeCccccCcchH--------HHHHHHHHhCCCCEEEEEEcCCCc
Q 019322 165 DACAVTYFGDGGTSEGDF--------HAALNFSAVTEAPVIFICRNNGWA 206 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~--------~Eal~~A~~~~Lpvi~vv~nN~~~ 206 (343)
++.|+++.-|-.+.-|.+ ..++.+|..+++|+|++++.-+..
T Consensus 120 G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGar 169 (292)
T PRK05654 120 GMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGAR 169 (292)
T ss_pred CEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc
Confidence 355666666654443332 345667888999999999777653
No 311
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=28.43 E-value=1.3e+02 Score=29.41 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=26.1
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE---EEcCC
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNG 204 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v---v~nN~ 204 (343)
.-.|++-||||.. .+..++..+++|+|-| |+|+-
T Consensus 96 d~LvvIGGDgS~~-----gA~~Lae~~~i~vVGvPkTIDNDi 132 (347)
T COG0205 96 DALVVIGGDGSYT-----GAALLAEEGGIPVVGVPKTIDNDI 132 (347)
T ss_pred CEEEEECCCChHH-----HHHHHHHhcCCcEEecCCCccCCC
Confidence 3578889999985 4567788888999988 66653
No 312
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=27.94 E-value=3.2e+02 Score=21.97 Aligned_cols=82 Identities=10% Similarity=0.038 Sum_probs=47.7
Q ss_pred CcchHHHHHHHHHhCCCCEEEEEEcCCC-ccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc
Q 019322 178 SEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256 (343)
Q Consensus 178 ~eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~ 256 (343)
-+|.+.||++.|++..-++++.+-+..- .-...-...+..+++.+.... ++-.+..|..+.+. ++ +.. ..+..
T Consensus 2 f~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~eg-~~-la~---~l~~~ 75 (116)
T cd02991 2 YQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKPEG-YR-VSQ---ALRER 75 (116)
T ss_pred CcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCChHH-HH-HHH---HhCCC
Confidence 3678889999998776666555544421 111222345566666666653 56666777767664 11 112 22234
Q ss_pred CCcEEEEEE
Q 019322 257 GRPILIEAL 265 (343)
Q Consensus 257 ~gP~lIe~~ 265 (343)
.=|.++-+.
T Consensus 76 ~~P~~~~l~ 84 (116)
T cd02991 76 TYPFLAMIM 84 (116)
T ss_pred CCCEEEEEE
Confidence 679888775
No 313
>PRK14072 6-phosphofructokinase; Provisional
Probab=27.87 E-value=1e+02 Score=30.89 Aligned_cols=40 Identities=10% Similarity=-0.071 Sum_probs=24.7
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCC--CCEEEE---EEcCCCcc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTE--APVIFI---CRNNGWAI 207 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~--Lpvi~v---v~nN~~~~ 207 (343)
...|++-|||++... +.--..+..++ +|+|.| |+|+-++.
T Consensus 105 d~LivIGGdgS~~~a--~~L~e~~~~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 105 GYFFYNGGNDSMDTA--LKVSQLAKKMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred CEEEEECChHHHHHH--HHHHHHHHHhCCCceEEEeeecccCCCCCC
Confidence 468899999999621 11112233345 788888 77775543
No 314
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=27.84 E-value=3.3e+02 Score=25.34 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCeEEEEeCccccCcc--hHHHHHHHHHhCCCCEEEEEEcCCC--ccccccccc-cCCccHHHhHhhcCceEEEEeCCC
Q 019322 164 KDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICRNNGW--AISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGND 238 (343)
Q Consensus 164 ~~~~vv~~~GDG~~~eG--~~~Eal~~A~~~~Lpvi~vv~nN~~--~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~d 238 (343)
+.+++++++.||.-..+ ...+.+..+...+++|..|-.-... ......... .....+.++|+.=|...+.++.++
T Consensus 163 p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~~~~~ 242 (296)
T TIGR03436 163 PGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYVNSND 242 (296)
T ss_pred CCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecccCcc
Confidence 35788999999976533 3455666666666665444221100 000000000 112347788888888887765444
Q ss_pred HHHHHHHHHHHHHHh
Q 019322 239 ALAIYSAVHAAREMA 253 (343)
Q Consensus 239 ~~~v~~a~~~a~~~~ 253 (343)
+..+++++.+..
T Consensus 243 ---l~~~f~~i~~~~ 254 (296)
T TIGR03436 243 ---LDGAFAQIAEEL 254 (296)
T ss_pred ---HHHHHHHHHHHH
Confidence 555555555543
No 315
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=27.74 E-value=4e+02 Score=26.53 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCce
Q 019322 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (343)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (343)
.++|.++..+..+.+ .+|+-.|-|-.. . .....|+..+++.++++-.+. + ..+ ..-..+.+.+|..
T Consensus 93 ~al~~~l~A~~~Gk~-~vIaetgaGnhG--~--A~A~~aa~~Gl~c~I~mp~~d--~----~rq---~~nv~~m~~lGA~ 158 (397)
T PRK04346 93 NVLGQALLAKRMGKK-RIIAETGAGQHG--V--ATATAAALLGLECVIYMGAED--V----ERQ---ALNVFRMKLLGAE 158 (397)
T ss_pred HHHHHHHHHHHcCCC-eEEEecCcHHHH--H--HHHHHHHHcCCcEEEEecCCc--h----hhh---hhHHHHHHHCCCE
Confidence 466777655555543 455556666543 2 123456778998877774431 0 000 0012345566777
Q ss_pred EEEEe
Q 019322 231 SIRVD 235 (343)
Q Consensus 231 ~~~Vd 235 (343)
++.|+
T Consensus 159 Vv~v~ 163 (397)
T PRK04346 159 VVPVT 163 (397)
T ss_pred EEEEC
Confidence 77665
No 316
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.73 E-value=1.4e+02 Score=23.95 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.5
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
.++..++++.--|... ...+++..|...+.|+|.|..+.
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCC
Confidence 3566778888777775 57788888888888888877654
No 317
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=27.31 E-value=2.1e+02 Score=26.01 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=48.0
Q ss_pred ccCCCeEEEEeCcccc--CcchHHHHHHHHHhCCC-CEEEEEE--cCCCccccccccccCCccHHHhHhhcCceEEEEe
Q 019322 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
..|+.+.....-+|.+ -.|..--++.++..-++ |+-++|+ |.. ......+++.++|+.+|++.+.++
T Consensus 132 ~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~d-------G~ma~~~~~~~fA~~~~l~~isi~ 203 (214)
T PRK01792 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDD-------GTMARTPEIVEFAKKFGYAVVTIE 203 (214)
T ss_pred CCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCC-------CCccCHHHHHHHHHHcCCcEEEHH
Confidence 3567777777778877 47888888999999998 8765554 321 112234568889999999998765
No 318
>PRK09225 threonine synthase; Validated
Probab=27.22 E-value=3.2e+02 Score=27.90 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=21.3
Q ss_pred eEeeCCCCCCCCCCCCCCCCHHHHHHH
Q 019322 15 YRVLDDDGQPFPDSSFVKVSEGVAIKM 41 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~s~~~~~~~ 41 (343)
++=+.+||-+.-|+..|++|.+++.++
T Consensus 20 l~Gla~DGGLyvP~~~P~l~~~~~~~~ 46 (462)
T PRK09225 20 LQGLAPDGGLYVPEELPKLSAEEIDAL 46 (462)
T ss_pred hcCCCCCCceEeCcccCCCCHHHHHHH
Confidence 344889999977777999998887665
No 319
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=27.07 E-value=1.2e+02 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 019322 298 TRFRKWIESNGWWNGDIESELRSSVR 323 (343)
Q Consensus 298 ~~~~~~L~~~g~~~~~~~~~i~~~~~ 323 (343)
.++-.+|.++|++|+++.++|..+..
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~~~t 44 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLSSPR 44 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCCCc
Confidence 45779999999999999999988644
No 320
>PLN03013 cysteine synthase
Probab=26.98 E-value=3.4e+02 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=24.5
Q ss_pred HHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCC
Q 019322 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (343)
Q Consensus 188 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (343)
.|+..++|+++|+.++- ...-.+..++||..++.++++
T Consensus 193 ~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 45678999998886641 112334566677777777654
No 321
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=26.82 E-value=73 Score=25.04 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 019322 296 PVTRFRKWIESNGWWNGDIESELRSSV 322 (343)
Q Consensus 296 Pi~~~~~~L~~~g~~~~~~~~~i~~~~ 322 (343)
+...+..+|.++|++|++..+.|+++-
T Consensus 22 ~~~~v~~~L~~~gIlT~~~~e~I~a~~ 48 (94)
T cd08327 22 VDGLVIQYLYQEGILTESHVEEIESQT 48 (94)
T ss_pred chHHHHHHHHhCCCCCHHHHHHHHccC
Confidence 333467899999999999999998643
No 322
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=26.68 E-value=2.1e+02 Score=26.13 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=46.1
Q ss_pred cCCCeEEEEeCcccc--CcchHHHHHHHHHhCCC-CEEEEEE--cCCCccccccccccCCccHHHhHhhcCceEEEEe
Q 019322 163 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
.|+.+.....=+|.+ -.|..--++.++..-++ |+-++|+ |.. ......+++.++|+.+|++.+.++
T Consensus 134 rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~d-------G~ma~~~~l~~fA~~h~l~~isi~ 204 (218)
T PRK00910 134 RPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPD-------GTMAKTPEIIAFGKLHNMPVLTIE 204 (218)
T ss_pred CCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCC-------CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 456665566556666 47888888999999998 8765554 321 112334678899999999998766
No 323
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=26.45 E-value=2.1e+02 Score=30.27 Aligned_cols=81 Identities=21% Similarity=0.167 Sum_probs=41.2
Q ss_pred cCchHHHHHHHHhcccc-------cCCCeEEEEeCccccCcc-----hHHHHHHHHHh---CCCCEEEEEEcCCCccccc
Q 019322 146 ATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEG-----DFHAALNFSAV---TEAPVIFICRNNGWAISTP 210 (343)
Q Consensus 146 G~~lp~A~G~A~a~k~~-------~~~~~vv~~~GDG~~~eG-----~~~Eal~~A~~---~~Lpvi~vv~nN~~~~~~~ 210 (343)
|.+-|++-|+..|.++. ...+.+++++.||..+.+ ...+++..|.. .++++++|-..+.
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 44444555554444322 135678899999988653 23344444444 3445444321111
Q ss_pred cccccCCccHHHhHhhcCceEEEEe
Q 019322 211 ISDQFRSDGAVVKGRAYGVRSIRVD 235 (343)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (343)
.....-..++|+..|..++.+|
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEecC
Confidence 0111235567777777776543
No 324
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=25.71 E-value=4.2e+02 Score=22.55 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHhCCCcHHHHHHHHHHcCCCCHH
Q 019322 237 NDALAIYSAVHAAREMAIGEGRPILIEALT---YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (343)
Q Consensus 237 ~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t---~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~ 313 (343)
.+|++..+.+..|.+. | ||+-.- ......+.-.-|..|+|.+++- + .+||+.++-+++.++.-++..
T Consensus 34 mspdqAk~li~~A~~e-----G--Ll~~~~~~l~~~Fd~~~v~iP~~FkP~~~~l--~-e~~~fe~ild~ia~~~g~~~~ 103 (144)
T PF09999_consen 34 MSPDQAKRLIDEAIEE-----G--LLEEEGGYLVPNFDPSEVEIPLGFKPDEEIL--Q-ERDPFERILDYIAAKTGIEKQ 103 (144)
T ss_pred CCHHHHHHHHHHHHHC-----C--CeeecCCEEEEecCccccccCCCCCCcHHHH--h-cccHHHHHHHHHHHhcCCCHH
Confidence 3677877778777752 2 222110 0111222233366788877653 2 589999999999996667877
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhcC
Q 019322 314 IESELRSSVRKQVI-------LVSLTISKYG 337 (343)
Q Consensus 314 ~~~~i~~~~~~~v~-------~a~~~a~~~~ 337 (343)
++-+...+.+++.. .|+-.|+++|
T Consensus 104 evv~~in~~q~~~~~~l~~e~aall~ake~G 134 (144)
T PF09999_consen 104 EVVAEINELQEELGGLLDPEAAALLYAKEKG 134 (144)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHhC
Confidence 76555555666665 4566666665
No 325
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=25.42 E-value=3.9e+02 Score=22.03 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=33.4
Q ss_pred eEEEEeCccccCcch--HH---HHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHH
Q 019322 167 CAVTYFGDGGTSEGD--FH---AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 241 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~--~~---Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~ 241 (343)
..++++.||.-+.|. .. +.++.+...+++| ++|- +... ....-+..+|..-+-..+.++ |+.+
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i-~~i~-----~g~~----~~~~~l~~ia~~~~g~~~~~~--~~~~ 165 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGITL-STLG-----FGDN----YNEDLMEAIADAGNGNTAYID--NLAE 165 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEE-EEEE-----eCCC----cCHHHHHHHHhcCCceEEEeC--CHHH
Confidence 567899999875442 22 2222222233333 3331 1100 111235566666566677776 7777
Q ss_pred HHHH
Q 019322 242 IYSA 245 (343)
Q Consensus 242 v~~a 245 (343)
+.++
T Consensus 166 ~~~~ 169 (170)
T cd01465 166 ARKV 169 (170)
T ss_pred HHhh
Confidence 6543
No 326
>PRK06381 threonine synthase; Validated
Probab=25.37 E-value=5.7e+02 Score=24.11 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=25.1
Q ss_pred HHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCC
Q 019322 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (343)
Q Consensus 188 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (343)
.|+..++|.++++..+. ...-.+..++||..++.+++.
T Consensus 81 ~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 81 FARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC
Confidence 45678899888886431 112334677788888888763
No 327
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.27 E-value=5.3e+02 Score=23.62 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=64.1
Q ss_pred cccccccccCc-hHHHHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccccccc---
Q 019322 138 YFTVSSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD--- 213 (343)
Q Consensus 138 ~~~~~g~lG~~-lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~--- 213 (343)
++..+..++.. +--.+|-.++.++.+.+--+|+.+..|++- =|..+|...+.|++++=..+..+.....+.
T Consensus 83 y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~-----lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s 157 (238)
T PRK08558 83 YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIP-----LAVAIASYFGADLVYAKKSKETGVEKFYEEYQR 157 (238)
T ss_pred EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHH-----HHHHHHHHHCcCEEEEEecCCCCCcceEEEeec
Confidence 33334444332 555778888888765443455555555552 235578889999987655443332111110
Q ss_pred ccCC----ccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 214 QFRS----DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 214 ~~~~----~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
.... -.+.+.+-.-|-.++-|| |+..-=.++..+.+.+++. |..++.+
T Consensus 158 ~s~~~~~~~~l~~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~-ga~vvgv 209 (238)
T PRK08558 158 LASGIEVTLYLPASALKKGDRVLIVD--DIIRSGETQRALLDLARQA-GADVVGV 209 (238)
T ss_pred cCCCceeEEEecHHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHc-CCEEEEE
Confidence 0000 011222223488999999 7766666666666666654 3444443
No 328
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.22 E-value=3.2e+02 Score=26.95 Aligned_cols=131 Identities=17% Similarity=0.101 Sum_probs=62.5
Q ss_pred ccccc--CchHHHHHHHHhcccccCCCeEEEEeCcccc-CcchHHHHHHHHHhCCCCEEEEEEcCCC-cccc-ccccccC
Q 019322 142 SSTIA--TQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGW-AIST-PISDQFR 216 (343)
Q Consensus 142 ~g~lG--~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~-~~~~~~~ 216 (343)
+|.|. .+.+.|+|.-...+..+..-.|+|. +.-= .||.-.- ..-....++|+.+|++|--. -+.. .....
T Consensus 176 sg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~--EsRP~~qG~rlt-a~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~V-- 250 (363)
T PRK05772 176 AGGLATGTGLGTALAPVKLAKALGMSVSVIAP--ETRPWLQGSRLT-VYELMEEGIKVTLITDTAVGLVMYKDMVNNV-- 250 (363)
T ss_pred CcchhhccccccHHHHHHHHHHCCCeEEEEEC--CCCccchhHHHH-HHHHHHCCCCEEEEehhHHHHHHhhcCCCEE--
Confidence 45553 4556677765544434444344433 3222 4564111 11234578999988866532 2211 11111
Q ss_pred CccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCCCCC-CCCCCCHHHHH
Q 019322 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD-STKYRPVDEIE 288 (343)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~dd-~~~Yr~~~e~~ 288 (343)
-.|...+..||.-...+=. ..-|+ -|+..+.|+++-+-++........|+ +-..|+++|+.
T Consensus 251 ---------ivGAD~I~~NG~v~NKiGT-y~lA~-~Ak~~~vPfyV~ap~~k~d~~~~~~~i~ieer~p~ev~ 312 (363)
T PRK05772 251 ---------MVGADRILRDGHVFNKIGT-FKEAV-IAHELGIPFYALAPTSTFDLKSDVNDVKIEERDPNEVR 312 (363)
T ss_pred ---------EECccEEecCCCEeehhhh-HHHHH-HHHHhCCCEEEEccccccCccccccccccccCCHHHhc
Confidence 1366677667732222111 11111 11234789999887776654433222 23346777664
No 329
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=25.07 E-value=2.6e+02 Score=25.95 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCC-CC-E---EEEEEcCCCccccccc---cccCCccHHHhHhhcCceEEEEeCC-CHHHHHHHHHHHHH
Q 019322 181 DFHAALNFSAVTE-AP-V---IFICRNNGWAISTPIS---DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAARE 251 (343)
Q Consensus 181 ~~~Eal~~A~~~~-Lp-v---i~vv~nN~~~~~~~~~---~~~~~~~~~~~a~a~G~~~~~VdG~-d~~~v~~a~~~a~~ 251 (343)
.+.|||.+|..-- -| + +.+-+|-.|-..--.. .-..-+++.......|..++-|++. |+.++. +
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i-------~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELI-------S 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHH-------H
Confidence 6899999998654 45 3 2233333442211111 1122345666677789999999985 544433 3
Q ss_pred HhhccCCcEEEEEE
Q 019322 252 MAIGEGRPILIEAL 265 (343)
Q Consensus 252 ~~r~~~gP~lIe~~ 265 (343)
+.. +.|+||...
T Consensus 230 yLE--~~pVLI~~~ 241 (242)
T PRK01322 230 YLE--NKPVLIVYE 241 (242)
T ss_pred HHh--cCcEEEEec
Confidence 332 589999863
No 330
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=24.96 E-value=1.9e+02 Score=27.99 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=24.4
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE---EEcCCCcc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWAI 207 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v---v~nN~~~~ 207 (343)
...+++-|||++... ..+ +..++|+|.| |+||-++.
T Consensus 96 d~LivIGGdgS~~~a-----~~L-~~~gi~vigiPkTIDNDl~gt 134 (324)
T TIGR02483 96 DALIAIGGDGTLGIA-----RRL-ADKGLPVVGVPKTIDNDLEAT 134 (324)
T ss_pred CEEEEECCchHHHHH-----HHH-HhcCCCEEeeccccCCCCcCC
Confidence 468888999998521 222 2357999988 77876543
No 331
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.64 E-value=1.8e+02 Score=27.72 Aligned_cols=29 Identities=31% Similarity=0.220 Sum_probs=20.3
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v 199 (343)
..++++-|||.+. .+++....++.|++-|
T Consensus 65 d~vi~lGGDGT~L-----~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 65 DLAIVVGGDGNML-----GAARVLARYDIKVIGI 93 (292)
T ss_pred CEEEEECCcHHHH-----HHHHHhcCCCCeEEEE
Confidence 5899999999884 3455555566776553
No 332
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=24.50 E-value=2.1e+02 Score=27.37 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCeEEEEeCccccCcchH--------HHHHHHHHhCCCCEEEEEEcCCCcc
Q 019322 165 DACAVTYFGDGGTSEGDF--------HAALNFSAVTEAPVIFICRNNGWAI 207 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~--------~Eal~~A~~~~Lpvi~vv~nN~~~~ 207 (343)
++.|+++.=|-.|.-|.+ ..++.+|...++|+|++++-.+-.+
T Consensus 132 Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARm 182 (296)
T CHL00174 132 GIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARM 182 (296)
T ss_pred CEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccc
Confidence 467788888877654443 3456778889999999988776544
No 333
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=24.47 E-value=2.6e+02 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=26.4
Q ss_pred CCCeEEEEeCccccCcc-hHHHHHHHHHhCCCCEEEEEE
Q 019322 164 KDACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 164 ~~~~vv~~~GDG~~~eG-~~~Eal~~A~~~~Lpvi~vv~ 201 (343)
..+.+++++.||.-..+ ...+.+......+++++.|-.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~ 140 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGV 140 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEec
Confidence 45678999999988654 356666666666777766643
No 334
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=24.30 E-value=2.2e+02 Score=19.48 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=17.5
Q ss_pred cEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHH
Q 019322 259 PILIEALTYRVGHHTTSDDSTKYRPVDEIEWWR 291 (343)
Q Consensus 259 P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~ 291 (343)
|.+=.|.+....++-.+= +|+.+|+..|.
T Consensus 3 PCi~vC~~d~~~~~C~GC----~RT~dEI~~W~ 31 (51)
T PF06945_consen 3 PCIGVCKLDPSDGVCRGC----GRTLDEIRDWK 31 (51)
T ss_pred CCccccccCCCCCccCCC----CCcHHHHHHHh
Confidence 444444443333333332 79999999997
No 335
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.18 E-value=2e+02 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=24.5
Q ss_pred CeEEEEeCcc-ccCcchHHHHHHHHHhCCCCEEEEE
Q 019322 166 ACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFIC 200 (343)
Q Consensus 166 ~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (343)
.++++|+|++ +..+|.++++...++..++.+-+|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3667777777 6678888887777777777665444
No 336
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=24.13 E-value=7.1e+02 Score=24.65 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred cCCCeEEEEeCcc-ccCcchHHHHHHHHHhCCCCEEEEEEcCCC--------------cccc-----ccccccCCccHHH
Q 019322 163 RKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNGW--------------AIST-----PISDQFRSDGAVV 222 (343)
Q Consensus 163 ~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~--------------~~~~-----~~~~~~~~~~~~~ 222 (343)
+|++ -|+|+|=| ++..-....++..|...++.-++|+.++.. .++. +++.......+..
T Consensus 134 nPdk-~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~~ 212 (369)
T TIGR00075 134 NPDR-KVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIGAKPYAP 212 (369)
T ss_pred CCCC-eEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEeccchhHH
Confidence 4444 33444433 223344555666677788865566555542 1111 1111223346778
Q ss_pred hHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 223 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
+++.|++|++ |.|-.+.++-.++...++...+ +.|.+...
T Consensus 213 l~~~y~~P~V-VaGFEp~DiL~~i~~ll~qi~~-g~~~v~N~ 252 (369)
T TIGR00075 213 IAEKYKIPIV-IAGFEPVDILQAIYMLLKQAIS-GEAKVENQ 252 (369)
T ss_pred HHHHcCCCeE-EeccCHHHHHHHHHHHHHHHHC-CCceEEEe
Confidence 8899999987 6899999999999988888776 46777654
No 337
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=23.95 E-value=3.5e+02 Score=27.13 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHH
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~ 244 (343)
+.++.+..||-+. ....++++.++.+++++-+++.+... ...+..+|..++.|+| +.++..+
T Consensus 127 ~~I~~ASSGnTgA------s~aaya~rag~~v~Vl~P~g~vs~~k-----------~~q~~~~ga~~i~v~G-~fDda~~ 188 (411)
T COG0498 127 KTILCASSGNTGA------SAAAYAARAGLKVFVLYPKGKVSPGK-----------LAQMLTLGAHVIAVDG-NFDDAQE 188 (411)
T ss_pred CEEEEeCCchHHH------HHHHHhccCCCeEEEEecCCCCCHHH-----------HHHHHhcCCEEEEEcC-cHHHHHH
Confidence 3445555555442 22446667777777776555433211 1123334556666665 3444444
Q ss_pred HHHHHH
Q 019322 245 AVHAAR 250 (343)
Q Consensus 245 a~~~a~ 250 (343)
.++++.
T Consensus 189 ~vk~~~ 194 (411)
T COG0498 189 LVKEAA 194 (411)
T ss_pred HHHHHH
Confidence 444443
No 338
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=23.76 E-value=5.4e+02 Score=24.81 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=31.5
Q ss_pred hHHHHHHHH-hcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC
Q 019322 149 LPHAVGAAY-ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (343)
Q Consensus 149 lp~A~G~A~-a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (343)
=|.+++... +.+......-+++++|.|... .+. +.+|...+.-.|++++-+.
T Consensus 151 epla~~~~~~a~~~~~~~~~~V~V~GaGpIG--Lla--~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 151 EPLATAYHGHAERAAVRPGGTVVVVGAGPIG--LLA--IALAKLLGASVVIVVDRSP 203 (350)
T ss_pred ChhhhhhhhhhhccCCCCCCEEEEECCCHHH--HHH--HHHHHHcCCceEEEeCCCH
Confidence 355666333 332222222299999999995 332 6677778877777776653
No 339
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.63 E-value=1.5e+02 Score=24.13 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=24.8
Q ss_pred CCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
++..++.+.++|+..+ ...+.+..+...+.|+|.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4556777777775432 24556667777777777776544
No 340
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.59 E-value=1.6e+02 Score=23.42 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=26.6
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEE
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (343)
.++..++++.-.|... ...+++..|...+.|+|.|..
T Consensus 42 ~~~dl~I~iS~SG~t~--e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 42 DRKTLVIAVSYSGNTE--ETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCEEEEEECCCCCH--HHHHHHHHHHHCCCEEEEEeC
Confidence 3556777777777775 467778888888888777763
No 341
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=23.58 E-value=8e+02 Score=25.05 Aligned_cols=150 Identities=13% Similarity=0.043 Sum_probs=69.1
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCCCCCcccccCCCCCCcccccccccCchHHHHHHHHhcccccCCCeEEEEeCcccc
Q 019322 98 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177 (343)
Q Consensus 98 ~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~ 177 (343)
+.++..|.+++++...+..- .+ ..||.-..+.. .+.++--..+- |-|+=.++..-....+.+++|++|=|+=
T Consensus 299 a~~~~lG~~~e~i~~~l~~~-~~-v~GRmE~v~~~--~~~v~VDyAHn----Pd~le~~L~~~~~~~~g~li~VfG~gGD 370 (475)
T COG0769 299 AAALALGVDLEDILAGLETL-KP-VPGRMELVNIG--GKLVIVDYAHN----PDGLEKALRAVRLHAAGRLIVVFGCGGD 370 (475)
T ss_pred HHHHHcCCCHHHHHHHHHhc-CC-CCCcceEecCC--CCeEEEEeccC----hHHHHHHHHHHHhhcCCcEEEEECccCC
Confidence 44556899999998876532 22 23665444333 22222112222 2233222222111122337777665444
Q ss_pred -CcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhc
Q 019322 178 -SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIG 255 (343)
Q Consensus 178 -~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~-~~VdG~d~~~v~~a~~~a~~~~r~ 255 (343)
..+-.|. |...+....++++|..+|--.-. +...+.++..++.-+. +. -..+-.+|++.|++.+.
T Consensus 371 rD~~kr~~-mg~ia~~~ad~vivt~dnpR~ed-------p~~i~~~i~~g~~~~~~~~----~~~dr~~AI~~ai~~a~- 437 (475)
T COG0769 371 RDKSKRPD-MGAIAEQLADIVIVTSDNPRSED-------PAVILADILAGIEAPEKYE----IIEDREEAIRKALDLAK- 437 (475)
T ss_pred CCcccccc-hHHHHHhcCCcEEEcCCCCCCcC-------HHHHHHHHHhccCCcccee----cchhHHHHHHHHHHhhc-
Confidence 2222332 33333344478888877631111 1112334444332221 11 12345677888887764
Q ss_pred cCCcEEEEEEEecCCCCC
Q 019322 256 EGRPILIEALTYRVGHHT 273 (343)
Q Consensus 256 ~~gP~lIe~~t~R~~gHs 273 (343)
.+++++.+ ..||.
T Consensus 438 -~~D~vlia----gkGhe 450 (475)
T COG0769 438 -EGDVVLIA----GKGHE 450 (475)
T ss_pred -cCCEEEEe----eccch
Confidence 46666654 45564
No 342
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=23.53 E-value=3.6e+02 Score=27.20 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=57.4
Q ss_pred EEEEeCccc--cCcchHHHHHHHHHhCCCCEEEEEEcCCCc----c-cccccc-----ccC-------CccHHHhHhhcC
Q 019322 168 AVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNGWA----I-STPISD-----QFR-------SDGAVVKGRAYG 228 (343)
Q Consensus 168 vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~----~-~~~~~~-----~~~-------~~~~~~~a~a~G 228 (343)
+++|.+|+. .....+.+++..+...+.++++-++|+... + .+.... ..+ ......+++..|
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g 223 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATG 223 (430)
T ss_pred eEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhC
Confidence 477888885 567789999999999999999999999421 1 111100 001 123345677888
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 229 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
.++.-+-=...+++. .++.|. ..+.|+-.|+..
T Consensus 224 ~~vhi~HiSt~~sv~-li~~ak----~~g~~vt~Evtp 256 (430)
T COG0044 224 ARVHICHISTKESVE-LIRAAK----AEGIRVTAEVTP 256 (430)
T ss_pred CcEEEEEcCCHHHHH-HHHHHh----hcCCceEEeecc
Confidence 666554433554443 333333 356788887754
No 343
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.50 E-value=1.6e+02 Score=29.78 Aligned_cols=38 Identities=18% Similarity=-0.017 Sum_probs=23.3
Q ss_pred CeEEEEeCccccCcc-hHHHHHHHHHhCC--CCEEEE---EEcCCCc
Q 019322 166 ACAVTYFGDGGTSEG-DFHAALNFSAVTE--APVIFI---CRNNGWA 206 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG-~~~Eal~~A~~~~--Lpvi~v---v~nN~~~ 206 (343)
...+++-|||++... .+.| .+...+ +|+|.| |+|+-..
T Consensus 174 ~~L~vIGGdgT~~gA~~l~e---e~~~~g~~I~VIGIPKTIDNDi~~ 217 (443)
T PRK06830 174 NILFVIGGDGTLRGASAIAE---EIERRGLKISVIGIPKTIDNDINF 217 (443)
T ss_pred CEEEEeCCchHHHHHHHHHH---HHHHhCCCceEEEeccccCCCCcC
Confidence 578999999999521 1122 222234 688888 7777543
No 344
>PLN02618 tryptophan synthase, beta chain
Probab=23.01 E-value=5e+02 Score=25.99 Aligned_cols=70 Identities=21% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHHhcccccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceE
Q 019322 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (343)
Q Consensus 152 A~G~A~a~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~ 231 (343)
+++.++..+..++ ..+|+-.|-|-.. . .....|+..+++.++++-.+. +. .+ ..-..+.+.||..+
T Consensus 107 a~~~~l~A~~~g~-~~vIaesgaGNhG--~--AlA~aaa~~Gl~~~I~m~~~~--~~----~~---~~nv~~mr~lGA~V 172 (410)
T PLN02618 107 AVAQALLAKRLGK-KRIIAETGAGQHG--V--ATATVCARFGLECIVYMGAQD--ME----RQ---ALNVFRMRLLGAEV 172 (410)
T ss_pred HHHHHHHHHHcCC-CEEEEEcCcHHHH--H--HHHHHHHHcCCcEEEEEcCCc--hh----hh---hhhHHHHHHCCCEE
Confidence 4555554444443 3455555544432 1 123456778999877775432 10 00 01123567788888
Q ss_pred EEEe
Q 019322 232 IRVD 235 (343)
Q Consensus 232 ~~Vd 235 (343)
+.|+
T Consensus 173 i~v~ 176 (410)
T PLN02618 173 RPVH 176 (410)
T ss_pred EEEe
Confidence 8883
No 345
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.92 E-value=1.5e+02 Score=25.67 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=50.5
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccc--------cccCCccHHHhHhhcCceEEEEeCCC
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS--------DQFRSDGAVVKGRAYGVRSIRVDGND 238 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~--------~~~~~~~~~~~a~a~G~~~~~VdG~d 238 (343)
.-++++|-.....+ .-.+....++++.+...+|...+..-.. -...+....+.|+.+|++++.+.. .
T Consensus 78 ~~Iavv~~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~s-g 152 (176)
T PF06506_consen 78 PKIAVVGYPNIIPG----LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIES-G 152 (176)
T ss_dssp SEEEEEEESS-SCC----HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS---
T ss_pred CcEEEEecccccHH----HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEe-c
Confidence 45666666666544 2345566788887777776432211111 011223456889999999999873 5
Q ss_pred HHHHHHHHHHHHHHhh
Q 019322 239 ALAIYSAVHAAREMAI 254 (343)
Q Consensus 239 ~~~v~~a~~~a~~~~r 254 (343)
.++++.|+.+|+.-++
T Consensus 153 ~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 153 EESIRRALEEALRIAR 168 (176)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999986543
No 346
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.67 E-value=1.9e+02 Score=22.81 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=25.0
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEc
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~n 202 (343)
+++..++++.-.|... ...+++..|...+.|+|.|..|
T Consensus 45 ~~~d~~I~iS~sG~t~--e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 45 DEDTLVIAISQSGETA--DTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCCcEEEEEeCCcCCH--HHHHHHHHHHHcCCeEEEEECC
Confidence 3455666666666665 3667777777777777777655
No 347
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.45 E-value=1.6e+02 Score=24.85 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=31.5
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
.++..++++..-|... ...+++..|...+.|+|.|..|.
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCC
Confidence 4667888888888775 57888999999999999888654
No 348
>PRK03202 6-phosphofructokinase; Provisional
Probab=22.44 E-value=2.1e+02 Score=27.67 Aligned_cols=71 Identities=21% Similarity=0.100 Sum_probs=38.8
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEE---EEcCCCccccccccccC-------CccHHHhHhhc-CceEEEE
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWAISTPISDQFR-------SDGAVVKGRAY-GVRSIRV 234 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v---v~nN~~~~~~~~~~~~~-------~~~~~~~a~a~-G~~~~~V 234 (343)
...+++-|||++.. +..++ .+++|+|.| |+||-.+.+....-.+. ...+..-+.+. .+-+++|
T Consensus 95 d~Li~IGGd~s~~~-----a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l~~~a~s~~rv~iVEv 168 (320)
T PRK03202 95 DALVVIGGDGSYMG-----AKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHERVFIVEV 168 (320)
T ss_pred CEEEEeCChHHHHH-----HHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 46888889999852 12222 468999988 88876544321111100 01222334444 4566677
Q ss_pred eCCCHHHH
Q 019322 235 DGNDALAI 242 (343)
Q Consensus 235 dG~d~~~v 242 (343)
=|.+.--+
T Consensus 169 MGR~~G~L 176 (320)
T PRK03202 169 MGRHAGDL 176 (320)
T ss_pred CCCChHHH
Confidence 77775443
No 349
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=22.39 E-value=3.3e+02 Score=22.89 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHH
Q 019322 192 TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (343)
Q Consensus 192 ~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~ 252 (343)
.+.|+|+|.+ ..-.. .............++.++++.+.+...+-..|.+++......
T Consensus 106 ~~~piilvgN--K~Dl~--~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 106 EDIPLVLVGN--KVDLE--SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVRE 162 (172)
T ss_pred CCCCEEEEEE--Chhhh--hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHH
Confidence 3568877763 22111 111122233455677789999988755555555556555543
No 350
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.29 E-value=1.7e+02 Score=25.71 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=33.2
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
.++..++++..-|... .+.+++..|...+.|+|.|..++
T Consensus 110 ~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 110 REGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCC
Confidence 5677899999988875 68899999999999999998764
No 351
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=22.23 E-value=1.1e+02 Score=31.48 Aligned_cols=14 Identities=14% Similarity=-0.085 Sum_probs=9.5
Q ss_pred CCCEEEEEEcCCCc
Q 019322 193 EAPVIFICRNNGWA 206 (343)
Q Consensus 193 ~Lpvi~vv~nN~~~ 206 (343)
.+|.|.+|.+..++
T Consensus 154 ~iP~Isvv~G~~~G 167 (512)
T TIGR01117 154 VVPQISAIMGPCAG 167 (512)
T ss_pred CCcEEEEEecCCCc
Confidence 35888887776554
No 352
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=22.15 E-value=6.4e+02 Score=23.39 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCC
Q 019322 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (343)
Q Consensus 188 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d 238 (343)
.|..+++|.++++..+- ...-....+.||..++.+++..
T Consensus 71 ~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 71 VAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCC
Confidence 45678999888885441 0123345667888888888653
No 353
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.01 E-value=54 Score=26.82 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEE
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~ 198 (343)
.+++++++|.|+-..+..-+...+|.++++|++-
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 3568899999999777888999999999999853
No 354
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.97 E-value=1.7e+02 Score=25.84 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=33.1
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
.++.+++++...|... .+.+++..|...+.|+|.|..++
T Consensus 110 ~~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 110 QPGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECCC
Confidence 5778899999888875 58889999999999999988754
No 355
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=21.95 E-value=2.8e+02 Score=28.12 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhh-------cCceEEEEeCCCHHHHHHHHHHHHHH
Q 019322 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA-------YGVRSIRVDGNDALAIYSAVHAAREM 252 (343)
Q Consensus 185 al~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a-------~G~~~~~VdG~d~~~v~~a~~~a~~~ 252 (343)
+..+|...++|||+||+--+.+-| .+.++.+ ..+.++.+|----+.=++-+++|++.
T Consensus 103 TA~lAk~l~~PVvLVid~~~~s~S-----------~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~ 166 (451)
T COG1797 103 TADLAKLLGAPVVLVVDASGLSRS-----------VAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEE 166 (451)
T ss_pred HHHHHHHhCCCEEEEEeCcchhHH-----------HHHHHHHHHhcCCCCceEEEEEecCCCHHHHHHHHHHhhh
Confidence 467999999999999976544332 2222222 23556655533334556677888874
No 356
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=21.79 E-value=98 Score=26.85 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=30.5
Q ss_pred CCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEc
Q 019322 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (343)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~n 202 (343)
-++++.++|-|+...+...+...++...++|++.-...
T Consensus 27 AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 27 AKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 35688888999987777888888999999998766543
No 357
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=21.79 E-value=2.1e+02 Score=22.69 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=17.1
Q ss_pred HHHHHHHcCC-CCHHHHHHHHHHH
Q 019322 300 FRKWIESNGW-WNGDIESELRSSV 322 (343)
Q Consensus 300 ~~~~L~~~g~-~~~~~~~~i~~~~ 322 (343)
..++|.++|+ ++++++++|.+.+
T Consensus 21 A~~RL~~R~I~l~~~~~~~i~~av 44 (96)
T TIGR02530 21 ALERMRERNISINPDDWKKLLEAV 44 (96)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5678889998 8999997554433
No 358
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=21.74 E-value=3.4e+02 Score=25.90 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=43.6
Q ss_pred chHHHHHHHHhcc--cccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHh
Q 019322 148 QLPHAVGAAYALK--MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 225 (343)
Q Consensus 148 ~lp~A~G~A~a~k--~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~ 225 (343)
....++.=.+..+ ...-+...|+++||+.-+ .+.+.-+..++.++..+.+++- -+|. . ..++.+.++
T Consensus 130 HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~-~v~~Sl~~~~a~~g~~v~~~~P-~~~~--------~-~~~~~~~~~ 198 (301)
T TIGR00670 130 HPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYG-RTVHSLAEALTRFGVEVYLISP-EELR--------M-PKEILEELK 198 (301)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCC-cHHHHHHHHHHHcCCEEEEECC-cccc--------C-CHHHHHHHH
Confidence 3444554444432 122356899999998643 2566667777888877666652 1221 1 134555666
Q ss_pred hcCceEEEEe
Q 019322 226 AYGVRSIRVD 235 (343)
Q Consensus 226 a~G~~~~~Vd 235 (343)
.+|..+...+
T Consensus 199 ~~G~~v~~~~ 208 (301)
T TIGR00670 199 AKGIKVRETE 208 (301)
T ss_pred HcCCEEEEEC
Confidence 6676655544
No 359
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=21.68 E-value=3.9e+02 Score=20.79 Aligned_cols=81 Identities=10% Similarity=0.002 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHhCCCCEEEEEEcCCCcccccc-ccccCCccHHHhHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC
Q 019322 179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 257 (343)
Q Consensus 179 eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~-~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~ 257 (343)
+|.+.|+++.|...+-|+++.+.++....+... ...+..+++.+.... .+-.+.+|-++++.. .+..... ...
T Consensus 3 ~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~--~~~~~~~---~~~ 76 (114)
T cd02958 3 QGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQ--RFLQSYK---VDK 76 (114)
T ss_pred cCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHH--HHHHHhC---ccC
Confidence 577889999999999998887777654333222 234555666666554 344555665554321 1222222 245
Q ss_pred CcEEEEEE
Q 019322 258 RPILIEAL 265 (343)
Q Consensus 258 gP~lIe~~ 265 (343)
-|+++-+.
T Consensus 77 ~P~~~~i~ 84 (114)
T cd02958 77 YPHIAIID 84 (114)
T ss_pred CCeEEEEe
Confidence 78888764
No 360
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.45 E-value=1.7e+02 Score=26.06 Aligned_cols=39 Identities=8% Similarity=0.171 Sum_probs=32.9
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
.++.+++++.+.|... .+.+++..|...+.|+|.|..+.
T Consensus 108 ~~gDvli~iS~SG~s~--~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 108 HAGDVLLAISTRGNSR--DIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCEEEEEeCCC
Confidence 4677899999999886 58899999999999999887654
No 361
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=21.44 E-value=56 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=22.0
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 019322 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYND 44 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 44 (343)
|.+.++|.+|+..+.-...+++.+++.+++..
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 88999999999866666778899998887654
No 362
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=21.36 E-value=2.7e+02 Score=30.04 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.3
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhCCCCEEEEE
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (343)
+.++=--||-.. ...||+.++..|++||||=-
T Consensus 160 VpvVPGTpgPit--t~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 160 VPVVPGTPGPIT--TVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred CCccCCCCCCcc--cHHHHHHHHHhcCCcEEEee
Confidence 444455567765 58899999999999998743
No 363
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.36 E-value=2.5e+02 Score=26.64 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=23.8
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCCcccc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 209 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~ 209 (343)
..++++-|||.+- .++..+..++.|++-| +-...++-+
T Consensus 66 Dlvi~iGGDGT~L-----~aa~~~~~~~~PilGI-N~G~lGFLt 103 (287)
T PRK14077 66 DFLISLGGDGTLI-----SLCRKAAEYDKFVLGI-HAGHLGFLT 103 (287)
T ss_pred CEEEEECCCHHHH-----HHHHHhcCCCCcEEEE-eCCCcccCC
Confidence 5799999999983 3344445567786654 334445543
No 364
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=21.35 E-value=4.1e+02 Score=21.81 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHhHhhcCceEEEEe----CCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 221 VVKGRAYGVRSIRVD----GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 221 ~~~a~a~G~~~~~Vd----G~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
...+...|+.++.+. .-+..++ .++.++++ ...+|+|++|.+
T Consensus 50 ~~~a~~~gl~y~~iPv~~~~~~~~~v-~~f~~~~~---~~~~pvL~HC~s 95 (135)
T TIGR01244 50 KAAAEAAGVTYHHQPVTAGDITPDDV-ETFRAAIG---AAEGPVLAYCRS 95 (135)
T ss_pred HHHHHHCCCeEEEeecCCCCCCHHHH-HHHHHHHH---hCCCCEEEEcCC
Confidence 345566788777663 2233333 44555554 357999999954
No 365
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.20 E-value=3.3e+02 Score=24.55 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHhHhhcCceEEEEe-----CCCHHHHHHHHHHHHHHhhccCCcEEEEEEE
Q 019322 220 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (343)
Q Consensus 220 ~~~~a~a~G~~~~~Vd-----G~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t 266 (343)
....|+.+|+|+.+.| -.|..++.+-++++...+|+ +|.++..+..
T Consensus 133 a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~-~G~aI~Igh~ 183 (213)
T PF04748_consen 133 APQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARK-QGSAIAIGHP 183 (213)
T ss_dssp HHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHC-CSEEEEEEE-
T ss_pred HHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhh-cCcEEEEEcC
Confidence 4578889999988854 36789999999999999987 6788887654
No 366
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=2e+02 Score=21.35 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=30.4
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEEecCCCCCC
Q 019322 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (343)
Q Consensus 230 ~~~~VdG~d~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 274 (343)
+.+.+-|..|..+.+|++.|+.++++. -..|-.+.+.-..||-.
T Consensus 7 K~IelvGtSp~S~d~Ai~~Ai~RA~~t-~~~l~wfeV~~~rg~v~ 50 (71)
T COG3360 7 KKIELVGTSPTSIDAAIANAIARAADT-LDNLDWFEVVETRGHVV 50 (71)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhh-hhcceEEEEEeecccEe
Confidence 566778999999999999999988764 23444444444455543
No 367
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.07 E-value=2.3e+02 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=34.2
Q ss_pred cccCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCC
Q 019322 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (343)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (343)
...++..++++..-|... .+.+++..|...+.|+|.+..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~--~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSM--SVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345777888888888876 578999999999999999987653
No 368
>PRK06740 histidinol-phosphatase; Validated
Probab=21.02 E-value=4.1e+02 Score=25.68 Aligned_cols=74 Identities=12% Similarity=-0.019 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccC
Q 019322 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEG 257 (343)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~ 257 (343)
.+.+.+..++..+.+ +=| |.+.+...+.....+...+.++++.+|+++. .-|.|.|.+|-..+.+|.+.+++.+
T Consensus 240 ~~~~I~~a~~~~g~~--lEI-Nt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G 314 (331)
T PRK06740 240 YYKEIARALVETNTA--TEI-NAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEENVKTLRNHG 314 (331)
T ss_pred HHHHHHHHHHHcCCE--EEE-ECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcC
Confidence 344444555555533 222 3332222233334456678899999999865 4589999999988888888887765
No 369
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=21.01 E-value=1.9e+02 Score=19.95 Aligned_cols=25 Identities=4% Similarity=-0.190 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 019322 309 WWNGDIESELRSSVRKQVILVSLTI 333 (343)
Q Consensus 309 ~~~~~~~~~i~~~~~~~v~~a~~~a 333 (343)
-.|++|+++.+++....|..++..+
T Consensus 8 qpS~eE~k~~e~~A~~Tvk~a~~~a 32 (49)
T PF10642_consen 8 QPSEEEIKAAEAQANFTVKNAAAAA 32 (49)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999988888876544
No 370
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=20.81 E-value=2.2e+02 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.060 Sum_probs=23.8
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCC--CCEEEE---EEcCCCcc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTE--APVIFI---CRNNGWAI 207 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~--Lpvi~v---v~nN~~~~ 207 (343)
...+++-|||++... ..-...+...+ +|||-| |+||-..+
T Consensus 178 ~~L~vIGGdgT~~~A--~~L~ee~~~~g~~I~VIGIPKTIDNDI~~t 222 (459)
T PTZ00286 178 NILFTLGGDGTHRGA--LAIYKELRRRKLNISVVGIPKTIDNDIPII 222 (459)
T ss_pred CEEEEeCCchHHHHH--HHHHHHHHHhCCCceEEEeccccCCCCCCc
Confidence 578999999999521 11111223344 678877 77775433
No 371
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.75 E-value=1.8e+02 Score=27.05 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=33.6
Q ss_pred cCCCeEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcC
Q 019322 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (343)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN 203 (343)
+++.+++.+...|.+. .+.+++..|...+.|+|.|..|.
T Consensus 117 ~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~~I~It~~~ 155 (257)
T cd05007 117 TERDVVIGIAASGRTP--YVLGALRYARARGALTIGIACNP 155 (257)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEECCC
Confidence 5677889999999986 58999999999999998888665
No 372
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.75 E-value=1.4e+02 Score=24.99 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 019322 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQV 326 (343)
Q Consensus 294 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v 326 (343)
.-|+.+=.++|..+| +|++||++.-.++....
T Consensus 20 ~sp~~~k~~FL~sKG-Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 20 NSPLEKKIAFLESKG-LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp CS-HHHHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred cCCHHHHHHHHHcCC-CCHHHHHHHHHhcCCcc
Confidence 346777778999999 59999887776665443
No 373
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.61 E-value=1.4e+02 Score=21.86 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 019322 296 PVTRFRKWIESNGWWNGDIESELRSSV 322 (343)
Q Consensus 296 Pi~~~~~~L~~~g~~~~~~~~~i~~~~ 322 (343)
++..+-.+|.++|++|.++.+.|....
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~~~ 40 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRSES 40 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHcCC
Confidence 566677899999999999999987654
No 374
>PLN02569 threonine synthase
Probab=20.55 E-value=5.9e+02 Score=26.07 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=26.8
Q ss_pred HHHHhCCCCEEEEEEcCCCccccccccccCCccHHHhHhhcCceEEEEeCCCHHHHHH
Q 019322 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (343)
Q Consensus 187 ~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~ 244 (343)
..|+..++|+++++-.+.... .-....++||..++.|+| +.++..+
T Consensus 204 ayaa~~Gl~~~I~vP~~~~~~-----------~k~~qi~a~GA~Vi~v~g-~~d~a~~ 249 (484)
T PLN02569 204 AYCAAAGIPSIVFLPADKISI-----------AQLVQPIANGALVLSIDT-DFDGCMR 249 (484)
T ss_pred HHHHhcCCeEEEEEcCCCCCH-----------HHHHHHHhcCCEEEEECC-CHHHHHH
Confidence 356788999988886543221 122344567777777776 3333333
No 375
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.54 E-value=1.4e+02 Score=24.21 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=21.2
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEE
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (343)
..|++.||....+| ++..+.-.....|.+.++.
T Consensus 52 ~fv~w~~dv~~~eg--~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 52 RMLFWACSVAKPEG--YRVSQALRERTYPFLAMIM 84 (116)
T ss_pred CEEEEEEecCChHH--HHHHHHhCCCCCCEEEEEE
Confidence 47999999998866 3333333333459877764
No 376
>PRK09932 glycerate kinase II; Provisional
Probab=20.53 E-value=4e+02 Score=26.48 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=24.8
Q ss_pred EEEEeCccccC----cch-HHHHHHHHHhCCCCEEEEEE
Q 019322 168 AVTYFGDGGTS----EGD-FHAALNFSAVTEAPVIFICR 201 (343)
Q Consensus 168 vv~~~GDG~~~----eG~-~~Eal~~A~~~~Lpvi~vv~ 201 (343)
=++++|.|.+. .|- ...-...|..++.|+|.||-
T Consensus 286 DlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G 324 (381)
T PRK09932 286 ALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAG 324 (381)
T ss_pred CEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEec
Confidence 48899999883 222 45666778888889888874
No 377
>PLN02564 6-phosphofructokinase
Probab=20.48 E-value=2.3e+02 Score=29.18 Aligned_cols=40 Identities=18% Similarity=-0.055 Sum_probs=24.1
Q ss_pred CeEEEEeCccccCcchHHHHHHHHHhCCCC--EEEE---EEcCCCcc
Q 019322 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFI---CRNNGWAI 207 (343)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp--vi~v---v~nN~~~~ 207 (343)
...+++-|||++.. ...-...+..+++| +|-| |+|+-...
T Consensus 178 d~LivIGGDGS~~g--A~~L~e~~~~~g~~i~VIGIPKTIDNDI~~t 222 (484)
T PLN02564 178 NQVYIIGGDGTQKG--ASVIYEEIRRRGLKVAVAGIPKTIDNDIPVI 222 (484)
T ss_pred CEEEEECCchHHHH--HHHHHHHHHHcCCCceEEEecccccCCCcCc
Confidence 47899999999952 11111223346766 6666 77775443
No 378
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=20.25 E-value=1.7e+02 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=25.6
Q ss_pred eEEEEeCccccCcchHHHHHHHHHhCCCCEEEEEEcCCC
Q 019322 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (343)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~nN~~ 205 (343)
.+|+++.+-....|..+| +-+|...+.||+.+..+...
T Consensus 64 ~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 64 IVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp EEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred EEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 445555443356677777 77888888999999887665
No 379
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=20.15 E-value=1e+02 Score=23.32 Aligned_cols=24 Identities=0% Similarity=0.073 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Q 019322 299 RFRKWIESNGWWNGDIESELRSSV 322 (343)
Q Consensus 299 ~~~~~L~~~g~~~~~~~~~i~~~~ 322 (343)
.+-++|.++|++|+++.+.|++.-
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~ 47 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAAT 47 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccC
Confidence 466899999999999999997754
No 380
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=20.06 E-value=2e+02 Score=26.51 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019322 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQVILVSLTISKYG 337 (343)
Q Consensus 294 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (343)
.||+... +.+++.|++|+++++++++...+--+..-+.+.+.|
T Consensus 123 ~Dp~i~~-~~~~~~~~~~~~e~~~i~~~~l~v~~~l~~~~~~~g 165 (230)
T cd01415 123 GDPLINE-DHILALGLATEEELKEIKELALKINEVLSEFFAEIG 165 (230)
T ss_pred CCCCCCH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6665443 667788999999999998887766555555555544
No 381
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.00 E-value=3.5e+02 Score=22.39 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEE
Q 019322 238 DALAIYSAVHAAREMAIGEGRPILIEA 264 (343)
Q Consensus 238 d~~~v~~a~~~a~~~~r~~~gP~lIe~ 264 (343)
++.++...+++.++.+|+. ++.+|-+
T Consensus 82 ~~~~~~~~l~~li~~~~~~-~~~vil~ 107 (177)
T cd01822 82 PPDQTRANLRQMIETAQAR-GAPVLLV 107 (177)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 4566777778887777765 3444433
Done!