Query 019324
Match_columns 343
No_of_seqs 451 out of 3493
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1271 Methyltransferases [Ge 100.0 2.1E-41 4.6E-46 278.2 19.7 222 78-343 2-227 (227)
2 COG2264 PrmA Ribosomal protein 99.8 1.5E-20 3.3E-25 170.2 13.4 211 38-284 53-273 (300)
3 COG2226 UbiE Methylase involve 99.8 8.6E-20 1.9E-24 161.3 10.9 114 163-283 50-165 (238)
4 PF06325 PrmA: Ribosomal prote 99.8 5.4E-20 1.2E-24 168.3 8.7 170 95-281 94-266 (295)
5 PF01209 Ubie_methyltran: ubiE 99.8 2.7E-19 5.8E-24 159.5 11.1 151 163-324 46-200 (233)
6 PF12847 Methyltransf_18: Meth 99.8 5.4E-18 1.2E-22 133.9 12.5 108 164-275 1-112 (112)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.2E-18 2.7E-23 151.5 9.2 114 163-285 58-172 (243)
8 PF13847 Methyltransf_31: Meth 99.7 3.5E-17 7.5E-22 136.8 12.4 107 163-276 2-112 (152)
9 KOG2361 Predicted methyltransf 99.7 1.1E-17 2.3E-22 144.7 9.2 147 93-279 34-188 (264)
10 TIGR00406 prmA ribosomal prote 99.7 3.8E-17 8.2E-22 150.7 12.1 133 135-278 128-263 (288)
11 PRK11207 tellurite resistance 99.7 8.4E-17 1.8E-21 140.3 13.4 105 163-273 29-133 (197)
12 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.8E-16 3.9E-21 139.5 13.4 106 164-275 34-153 (213)
13 PF08241 Methyltransf_11: Meth 99.7 1.1E-16 2.5E-21 121.9 10.0 94 169-272 1-95 (95)
14 PLN02233 ubiquinone biosynthes 99.7 4.4E-16 9.6E-21 141.6 14.8 115 163-284 72-192 (261)
15 PLN02396 hexaprenyldihydroxybe 99.7 1.9E-16 4E-21 147.3 12.5 111 163-281 130-242 (322)
16 TIGR00477 tehB tellurite resis 99.7 2.9E-16 6.2E-21 136.8 12.9 104 163-273 29-132 (195)
17 PRK11036 putative S-adenosyl-L 99.7 3.3E-16 7.2E-21 142.1 12.8 110 163-280 43-155 (255)
18 PRK12335 tellurite resistance 99.7 1.4E-15 3.1E-20 140.3 15.4 104 164-274 120-223 (287)
19 PF03848 TehB: Tellurite resis 99.7 3.9E-16 8.5E-21 133.9 10.6 106 163-275 29-134 (192)
20 KOG1540 Ubiquinone biosynthesi 99.7 1.3E-15 2.9E-20 132.7 13.8 150 163-324 99-261 (296)
21 PLN02244 tocopherol O-methyltr 99.7 9.2E-16 2E-20 144.7 13.5 107 163-276 117-225 (340)
22 PRK00517 prmA ribosomal protei 99.7 4.9E-16 1.1E-20 140.5 10.9 160 96-278 54-217 (250)
23 PRK13255 thiopurine S-methyltr 99.6 1.9E-15 4E-20 133.6 13.3 104 163-272 36-153 (218)
24 PF05175 MTS: Methyltransferas 99.6 1.5E-15 3.3E-20 129.3 12.2 113 164-278 31-144 (170)
25 TIGR00138 gidB 16S rRNA methyl 99.6 2.7E-15 5.8E-20 128.9 13.5 115 163-288 41-156 (181)
26 PRK00107 gidB 16S rRNA methylt 99.6 4E-15 8.7E-20 128.2 14.4 111 163-284 44-155 (187)
27 KOG1270 Methyltransferases [Co 99.6 2.2E-16 4.8E-21 138.4 6.5 110 165-284 90-205 (282)
28 TIGR02752 MenG_heptapren 2-hep 99.6 5.9E-15 1.3E-19 131.8 15.7 109 163-278 44-155 (231)
29 PRK14103 trans-aconitate 2-met 99.6 1.8E-15 4E-20 137.3 11.9 100 163-276 28-128 (255)
30 PRK15451 tRNA cmo(5)U34 methyl 99.6 3.6E-15 7.9E-20 134.6 13.2 107 163-275 55-165 (247)
31 PRK15068 tRNA mo(5)U34 methylt 99.6 2.6E-15 5.5E-20 140.4 12.1 105 163-274 121-226 (322)
32 TIGR00452 methyltransferase, p 99.6 5.6E-15 1.2E-19 136.9 12.7 106 163-275 120-226 (314)
33 PRK13256 thiopurine S-methyltr 99.6 1.7E-14 3.6E-19 127.2 14.6 106 164-276 43-165 (226)
34 PF05401 NodS: Nodulation prot 99.6 3.7E-15 8E-20 126.5 10.0 105 165-276 44-148 (201)
35 PF13649 Methyltransf_25: Meth 99.6 2.7E-15 5.8E-20 116.5 8.5 95 168-268 1-101 (101)
36 PRK01683 trans-aconitate 2-met 99.6 9.1E-15 2E-19 132.9 13.1 102 163-276 30-132 (258)
37 COG4106 Tam Trans-aconitate me 99.6 3.9E-15 8.5E-20 126.8 9.0 113 163-287 29-142 (257)
38 TIGR00537 hemK_rel_arch HemK-r 99.6 4.8E-14 1E-18 121.1 15.4 122 163-287 18-154 (179)
39 PRK15001 SAM-dependent 23S rib 99.6 4.1E-14 8.9E-19 134.0 16.0 120 152-274 217-340 (378)
40 TIGR00740 methyltransferase, p 99.6 2.8E-14 6.2E-19 128.2 14.3 109 163-277 52-164 (239)
41 PF02353 CMAS: Mycolic acid cy 99.6 1.1E-14 2.5E-19 132.6 11.7 110 162-279 60-171 (273)
42 PRK10258 biotin biosynthesis p 99.6 1.7E-14 3.7E-19 130.6 12.6 102 164-278 42-144 (251)
43 smart00828 PKS_MT Methyltransf 99.6 1.5E-14 3.3E-19 128.6 11.6 104 166-276 1-106 (224)
44 PRK11873 arsM arsenite S-adeno 99.6 2.4E-14 5.1E-19 131.2 13.1 107 162-275 75-184 (272)
45 PTZ00098 phosphoethanolamine N 99.6 1.9E-14 4.2E-19 131.0 12.3 108 163-277 51-159 (263)
46 PF08242 Methyltransf_12: Meth 99.6 3.1E-16 6.6E-21 121.3 -0.2 95 169-270 1-99 (99)
47 PRK00121 trmB tRNA (guanine-N( 99.6 2.7E-14 5.9E-19 125.0 11.9 125 164-288 40-171 (202)
48 PRK08287 cobalt-precorrin-6Y C 99.6 5.2E-14 1.1E-18 121.7 13.5 115 163-288 30-146 (187)
49 PF13489 Methyltransf_23: Meth 99.6 1.4E-14 2.9E-19 121.6 9.4 98 163-278 21-119 (161)
50 COG2230 Cfa Cyclopropane fatty 99.6 3.1E-14 6.8E-19 128.3 12.0 111 161-279 69-181 (283)
51 PLN02336 phosphoethanolamine N 99.6 2.7E-14 5.9E-19 140.9 12.5 107 163-277 265-372 (475)
52 PRK05785 hypothetical protein; 99.6 1.7E-14 3.8E-19 128.3 9.8 89 164-267 51-140 (226)
53 COG4123 Predicted O-methyltran 99.5 3.7E-14 8.1E-19 125.6 11.4 139 151-289 31-185 (248)
54 TIGR02469 CbiT precorrin-6Y C5 99.5 1.1E-13 2.3E-18 110.9 13.1 103 163-275 18-123 (124)
55 PF13659 Methyltransf_26: Meth 99.5 1.6E-14 3.5E-19 114.9 8.1 112 165-276 1-117 (117)
56 PRK14967 putative methyltransf 99.5 1.3E-13 2.7E-18 122.7 14.5 124 163-287 35-173 (223)
57 PF05724 TPMT: Thiopurine S-me 99.5 5E-14 1.1E-18 124.3 11.3 138 94-272 2-153 (218)
58 PRK14966 unknown domain/N5-glu 99.5 1.5E-13 3.4E-18 130.4 15.0 140 147-287 234-394 (423)
59 TIGR03587 Pse_Me-ase pseudamin 99.5 1.2E-13 2.6E-18 120.9 12.2 100 163-274 42-142 (204)
60 TIGR03533 L3_gln_methyl protei 99.5 2.5E-13 5.5E-18 124.9 14.8 139 148-287 102-263 (284)
61 TIGR00536 hemK_fam HemK family 99.5 2.7E-13 5.9E-18 124.9 14.6 140 148-287 95-257 (284)
62 KOG4300 Predicted methyltransf 99.5 1.9E-13 4.2E-18 115.6 12.1 108 163-277 75-185 (252)
63 TIGR02072 BioC biotin biosynth 99.5 2.1E-13 4.6E-18 121.9 12.4 104 164-278 34-139 (240)
64 TIGR00080 pimt protein-L-isoas 99.5 2E-13 4.3E-18 120.8 11.6 100 163-275 76-178 (215)
65 PRK13944 protein-L-isoaspartat 99.5 2.8E-13 6.1E-18 118.9 12.4 100 163-275 71-174 (205)
66 TIGR00091 tRNA (guanine-N(7)-) 99.5 6.4E-13 1.4E-17 115.6 14.5 124 164-287 16-146 (194)
67 TIGR03534 RF_mod_PrmC protein- 99.5 5.1E-13 1.1E-17 120.7 14.4 124 164-287 87-230 (251)
68 PRK09489 rsmC 16S ribosomal RN 99.5 3.5E-13 7.7E-18 126.7 13.7 122 152-278 185-307 (342)
69 PF08003 Methyltransf_9: Prote 99.5 1.8E-13 3.8E-18 123.6 11.1 106 163-275 114-220 (315)
70 PRK13942 protein-L-isoaspartat 99.5 2.6E-13 5.7E-18 119.6 11.8 99 163-274 75-176 (212)
71 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.4E-13 5.2E-18 127.0 12.1 104 163-276 112-217 (340)
72 PRK08317 hypothetical protein; 99.5 8.2E-13 1.8E-17 118.0 14.7 106 163-276 18-126 (241)
73 COG2813 RsmC 16S RNA G1207 met 99.5 1E-12 2.2E-17 118.9 15.0 121 151-275 146-267 (300)
74 PRK14968 putative methyltransf 99.5 1.3E-12 2.9E-17 112.6 15.2 124 163-287 22-162 (188)
75 PRK11805 N5-glutamine S-adenos 99.5 8.3E-13 1.8E-17 122.7 14.5 139 147-286 113-274 (307)
76 TIGR02021 BchM-ChlM magnesium 99.5 4.4E-13 9.4E-18 118.9 12.1 103 163-273 54-157 (219)
77 PRK06922 hypothetical protein; 99.5 4.1E-13 9E-18 133.0 13.0 112 163-275 417-538 (677)
78 COG2890 HemK Methylase of poly 99.5 7.7E-13 1.7E-17 121.2 13.6 140 147-287 92-251 (280)
79 PRK11705 cyclopropane fatty ac 99.5 6E-13 1.3E-17 127.2 13.1 104 163-277 166-270 (383)
80 PRK14904 16S rRNA methyltransf 99.5 3.1E-12 6.7E-17 125.1 18.0 129 163-291 249-394 (445)
81 PRK01544 bifunctional N5-gluta 99.5 8.5E-13 1.8E-17 130.5 14.0 124 164-287 138-282 (506)
82 PRK14903 16S rRNA methyltransf 99.5 1.4E-12 3E-17 126.6 14.9 131 161-291 234-383 (431)
83 smart00138 MeTrc Methyltransfe 99.4 3.9E-13 8.5E-18 122.4 10.3 106 164-274 99-242 (264)
84 PRK07402 precorrin-6B methylas 99.4 1.3E-12 2.9E-17 113.8 12.9 104 163-277 39-145 (196)
85 PLN02585 magnesium protoporphy 99.4 4.6E-12 1E-16 117.7 16.9 100 164-272 144-248 (315)
86 COG2242 CobL Precorrin-6B meth 99.4 1.9E-12 4E-17 109.2 12.9 129 147-287 18-149 (187)
87 TIGR03704 PrmC_rel_meth putati 99.4 2.1E-12 4.6E-17 116.7 14.3 121 165-288 87-230 (251)
88 TIGR01983 UbiG ubiquinone bios 99.4 1.5E-12 3.2E-17 115.7 13.0 109 163-279 44-154 (224)
89 PRK00216 ubiE ubiquinone/menaq 99.4 1.8E-12 3.9E-17 116.0 13.6 108 163-277 50-161 (239)
90 PRK14901 16S rRNA methyltransf 99.4 6.4E-12 1.4E-16 122.4 18.3 129 163-291 251-401 (434)
91 TIGR00446 nop2p NOL1/NOP2/sun 99.4 3.4E-12 7.4E-17 116.3 14.8 128 163-290 70-215 (264)
92 COG2518 Pcm Protein-L-isoaspar 99.4 1.5E-12 3.2E-17 112.2 11.2 99 163-275 71-170 (209)
93 PRK09328 N5-glutamine S-adenos 99.4 4.1E-12 9E-17 116.4 15.0 125 163-287 107-251 (275)
94 TIGR01177 conserved hypothetic 99.4 3.2E-12 7E-17 120.2 14.5 117 161-278 179-298 (329)
95 PRK04266 fibrillarin; Provisio 99.4 4.9E-12 1.1E-16 112.3 14.7 100 163-273 71-175 (226)
96 PRK00312 pcm protein-L-isoaspa 99.4 2.7E-12 5.7E-17 113.3 12.8 99 163-275 77-176 (212)
97 PRK11088 rrmA 23S rRNA methylt 99.4 2E-12 4.4E-17 118.4 12.5 96 164-278 85-185 (272)
98 PRK05134 bifunctional 3-demeth 99.4 3.2E-12 7E-17 114.3 13.5 108 163-279 47-156 (233)
99 PRK10901 16S rRNA methyltransf 99.4 7.9E-12 1.7E-16 121.6 17.1 128 162-290 242-388 (427)
100 PRK00377 cbiT cobalt-precorrin 99.4 3.4E-12 7.3E-17 111.4 12.9 103 163-275 39-146 (198)
101 PLN03075 nicotianamine synthas 99.4 4.2E-12 9.2E-17 115.8 13.9 107 164-276 123-235 (296)
102 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 4.3E-12 9.3E-17 112.3 13.2 106 163-277 38-146 (223)
103 PRK14902 16S rRNA methyltransf 99.4 5.8E-12 1.2E-16 123.2 14.9 128 162-289 248-394 (444)
104 TIGR02716 C20_methyl_CrtF C-20 99.4 7.3E-12 1.6E-16 116.7 13.6 106 163-275 148-255 (306)
105 cd02440 AdoMet_MTases S-adenos 99.4 9.3E-12 2E-16 95.1 11.4 101 167-273 1-103 (107)
106 PF07021 MetW: Methionine bios 99.4 8.1E-12 1.8E-16 106.0 11.4 102 163-281 12-116 (193)
107 PRK15128 23S rRNA m(5)C1962 me 99.4 7.8E-12 1.7E-16 119.8 12.7 125 161-287 217-354 (396)
108 PF03291 Pox_MCEL: mRNA cappin 99.4 6.5E-12 1.4E-16 117.3 11.8 111 164-277 62-189 (331)
109 PF01135 PCMT: Protein-L-isoas 99.3 2.5E-12 5.5E-17 112.6 8.4 102 162-276 70-174 (209)
110 PRK11783 rlmL 23S rRNA m(2)G24 99.3 7E-12 1.5E-16 128.8 13.0 126 162-287 536-669 (702)
111 PRK07580 Mg-protoporphyrin IX 99.3 1E-11 2.3E-16 110.6 12.5 99 163-269 62-161 (230)
112 PRK11188 rrmJ 23S rRNA methylt 99.3 1.2E-11 2.5E-16 108.8 12.4 113 163-287 50-179 (209)
113 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1E-11 2.2E-16 108.0 11.7 107 163-277 52-162 (199)
114 PLN02336 phosphoethanolamine N 99.3 7.2E-12 1.6E-16 123.7 12.0 104 163-274 36-142 (475)
115 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.7E-11 3.6E-16 115.9 13.6 116 163-279 121-240 (390)
116 TIGR03438 probable methyltrans 99.3 5.3E-11 1.2E-15 110.5 16.6 108 163-275 62-178 (301)
117 TIGR00438 rrmJ cell division p 99.3 3E-11 6.5E-16 104.5 13.4 115 162-287 30-160 (188)
118 KOG1975 mRNA cap methyltransfe 99.3 1.1E-11 2.4E-16 111.6 10.7 120 163-287 116-248 (389)
119 TIGR00563 rsmB ribosomal RNA s 99.3 3.1E-11 6.6E-16 117.5 14.8 130 162-291 236-385 (426)
120 PRK06202 hypothetical protein; 99.3 2.2E-11 4.7E-16 109.0 12.4 106 163-278 59-170 (232)
121 KOG2899 Predicted methyltransf 99.3 7.1E-11 1.5E-15 102.5 14.6 176 163-343 57-277 (288)
122 PRK00811 spermidine synthase; 99.3 5.1E-11 1.1E-15 109.6 14.4 110 163-275 75-192 (283)
123 COG2263 Predicted RNA methylas 99.3 5.9E-11 1.3E-15 99.8 13.3 83 163-248 44-126 (198)
124 PRK03522 rumB 23S rRNA methylu 99.3 6.1E-11 1.3E-15 110.9 14.6 108 164-282 173-282 (315)
125 PLN02781 Probable caffeoyl-CoA 99.3 2.7E-11 5.9E-16 108.3 11.0 111 154-274 58-178 (234)
126 PHA03411 putative methyltransf 99.3 3.7E-11 8.1E-16 108.1 11.8 104 164-274 64-183 (279)
127 TIGR02081 metW methionine bios 99.3 2.5E-11 5.4E-16 105.6 10.2 98 163-277 12-112 (194)
128 KOG2904 Predicted methyltransf 99.3 8.6E-11 1.9E-15 103.8 13.5 131 145-275 124-286 (328)
129 PRK04457 spermidine synthase; 99.3 2.6E-11 5.6E-16 110.3 10.3 112 163-277 65-180 (262)
130 PRK13943 protein-L-isoaspartat 99.3 4.6E-11 1E-15 111.2 11.8 99 163-274 79-180 (322)
131 PHA03412 putative methyltransf 99.2 5.2E-11 1.1E-15 104.8 11.0 101 164-269 49-158 (241)
132 COG2519 GCD14 tRNA(1-methylade 99.2 2.4E-10 5.2E-15 100.7 14.0 117 161-289 91-211 (256)
133 TIGR00095 RNA methyltransferas 99.2 8.5E-11 1.9E-15 101.7 11.0 126 146-277 31-162 (189)
134 PLN02672 methionine S-methyltr 99.2 1.8E-10 3.9E-15 121.1 15.3 154 165-318 119-333 (1082)
135 PRK13168 rumA 23S rRNA m(5)U19 99.2 2E-10 4.4E-15 112.3 14.8 110 163-284 296-410 (443)
136 smart00650 rADc Ribosomal RNA 99.2 3.3E-10 7.1E-15 96.3 13.9 100 163-273 12-112 (169)
137 TIGR02085 meth_trns_rumB 23S r 99.2 2.1E-10 4.5E-15 109.7 13.9 133 141-284 207-344 (374)
138 PTZ00146 fibrillarin; Provisio 99.2 2.2E-10 4.8E-15 104.2 12.3 100 163-273 131-236 (293)
139 COG1092 Predicted SAM-dependen 99.2 1.2E-10 2.5E-15 110.5 10.4 126 159-286 212-350 (393)
140 KOG1541 Predicted protein carb 99.2 2.2E-10 4.9E-15 98.2 11.1 111 164-281 50-167 (270)
141 PF03602 Cons_hypoth95: Conser 99.2 5.5E-11 1.2E-15 102.2 6.6 127 144-277 21-156 (183)
142 PLN02366 spermidine synthase 99.2 1E-09 2.2E-14 101.7 15.2 109 163-274 90-206 (308)
143 COG1041 Predicted DNA modifica 99.1 9.4E-10 2E-14 101.5 14.5 117 158-275 191-311 (347)
144 TIGR00417 speE spermidine synt 99.1 1.2E-09 2.6E-14 100.0 14.3 111 163-276 71-188 (270)
145 PRK01581 speE spermidine synth 99.1 4E-10 8.7E-15 105.2 10.4 112 162-275 148-269 (374)
146 PF10672 Methyltrans_SAM: S-ad 99.1 2.9E-10 6.2E-15 103.8 8.7 124 163-287 122-253 (286)
147 PLN02232 ubiquinone biosynthes 99.1 5.6E-10 1.2E-14 94.0 9.7 90 191-287 1-94 (160)
148 COG4976 Predicted methyltransf 99.1 1.9E-11 4.1E-16 105.3 0.6 100 165-277 126-228 (287)
149 KOG3010 Methyltransferase [Gen 99.1 1.9E-10 4.2E-15 100.0 6.6 103 165-276 34-139 (261)
150 PLN02476 O-methyltransferase 99.1 1.1E-09 2.3E-14 99.6 11.2 113 151-273 105-227 (278)
151 PF01596 Methyltransf_3: O-met 99.0 5E-10 1.1E-14 97.8 7.8 109 155-273 36-154 (205)
152 COG0742 N6-adenine-specific me 99.0 1.4E-09 3.1E-14 92.3 10.2 129 143-277 21-157 (187)
153 COG4122 Predicted O-methyltran 99.0 1.1E-09 2.4E-14 95.8 9.8 110 154-273 49-165 (219)
154 KOG2352 Predicted spermine/spe 99.0 1.1E-09 2.3E-14 104.6 10.4 112 163-275 46-162 (482)
155 TIGR00479 rumA 23S rRNA (uraci 99.0 9.9E-10 2.1E-14 107.2 10.3 102 163-276 291-397 (431)
156 PRK11933 yebU rRNA (cytosine-C 99.0 5.1E-09 1.1E-13 102.2 14.9 128 163-290 112-258 (470)
157 PRK05031 tRNA (uracil-5-)-meth 99.0 2.1E-09 4.5E-14 102.3 11.9 74 165-239 207-297 (362)
158 PRK03612 spermidine synthase; 99.0 1.1E-09 2.4E-14 109.0 10.3 111 163-275 296-416 (521)
159 TIGR02143 trmA_only tRNA (urac 99.0 2.5E-09 5.5E-14 101.4 12.2 107 165-284 198-321 (353)
160 PF02390 Methyltransf_4: Putat 99.0 1.2E-09 2.7E-14 94.8 9.0 113 166-278 19-137 (195)
161 KOG1499 Protein arginine N-met 99.0 1.4E-09 3E-14 99.9 8.9 105 163-272 59-165 (346)
162 PF10294 Methyltransf_16: Puta 99.0 3E-09 6.5E-14 90.8 10.2 107 163-277 44-159 (173)
163 KOG3191 Predicted N6-DNA-methy 99.0 2.3E-08 4.9E-13 83.5 14.7 122 165-287 44-182 (209)
164 PF01739 CheR: CheR methyltran 99.0 3.1E-09 6.7E-14 92.1 9.0 106 164-274 31-175 (196)
165 PF00891 Methyltransf_2: O-met 98.9 6.2E-09 1.3E-13 93.6 10.8 99 163-275 99-200 (241)
166 PF05219 DREV: DREV methyltran 98.9 4.9E-09 1.1E-13 93.0 9.8 93 164-273 94-187 (265)
167 COG0220 Predicted S-adenosylme 98.9 1.3E-08 2.8E-13 90.0 12.3 116 166-281 50-171 (227)
168 PF08704 GCD14: tRNA methyltra 98.9 5.1E-09 1.1E-13 93.7 9.6 115 161-287 37-160 (247)
169 PF01170 UPF0020: Putative RNA 98.9 4.4E-09 9.5E-14 90.2 8.8 120 161-281 25-157 (179)
170 PLN02589 caffeoyl-CoA O-methyl 98.9 7.1E-09 1.5E-13 93.0 9.6 110 154-273 69-189 (247)
171 PRK04338 N(2),N(2)-dimethylgua 98.9 5E-09 1.1E-13 100.0 9.1 98 165-273 58-157 (382)
172 PF05185 PRMT5: PRMT5 arginine 98.9 8.1E-09 1.8E-13 100.4 10.6 103 165-272 187-295 (448)
173 PF05891 Methyltransf_PK: AdoM 98.9 5.1E-09 1.1E-13 90.8 8.1 105 163-272 54-159 (218)
174 COG2265 TrmA SAM-dependent met 98.9 1.4E-08 2.9E-13 98.2 11.8 114 163-287 292-409 (432)
175 COG2520 Predicted methyltransf 98.9 2.4E-08 5.1E-13 93.0 12.6 109 161-280 185-295 (341)
176 PF12147 Methyltransf_20: Puta 98.9 2.3E-08 4.9E-13 89.9 12.0 111 163-277 134-252 (311)
177 PF02475 Met_10: Met-10+ like- 98.9 5.6E-09 1.2E-13 90.7 7.8 99 162-271 99-199 (200)
178 COG0144 Sun tRNA and rRNA cyto 98.9 1.3E-07 2.9E-12 89.6 17.2 133 161-293 153-307 (355)
179 KOG3420 Predicted RNA methylas 98.9 2.6E-09 5.6E-14 85.7 4.4 79 163-242 47-126 (185)
180 KOG1500 Protein arginine N-met 98.9 1.4E-08 3.1E-13 92.1 9.6 105 163-273 176-281 (517)
181 PTZ00338 dimethyladenosine tra 98.8 2.4E-08 5.3E-13 92.1 11.3 78 163-242 35-113 (294)
182 PRK00274 ksgA 16S ribosomal RN 98.8 1.4E-08 3E-13 93.0 9.3 75 163-241 41-116 (272)
183 PRK11727 23S rRNA mA1618 methy 98.8 4.2E-08 9.1E-13 91.2 12.4 79 164-242 114-201 (321)
184 PF02384 N6_Mtase: N-6 DNA Met 98.8 4.2E-08 9.1E-13 91.6 12.6 160 163-343 45-233 (311)
185 PLN02823 spermine synthase 98.8 2.6E-08 5.7E-13 93.3 10.2 111 163-274 102-220 (336)
186 PRK10611 chemotaxis methyltran 98.8 2.6E-08 5.7E-13 91.2 9.8 105 165-274 116-262 (287)
187 PRK14896 ksgA 16S ribosomal RN 98.8 2.4E-08 5.3E-13 90.7 9.2 75 163-241 28-102 (258)
188 PRK00050 16S rRNA m(4)C1402 me 98.8 9.3E-08 2E-12 87.8 12.4 73 163-237 18-97 (296)
189 PRK04148 hypothetical protein; 98.8 1.8E-07 3.9E-12 75.5 12.4 67 164-238 16-85 (134)
190 PF06080 DUF938: Protein of un 98.7 5.9E-08 1.3E-12 83.7 9.7 104 167-275 28-142 (204)
191 KOG0820 Ribosomal RNA adenine 98.7 1.3E-08 2.9E-13 90.1 5.2 133 162-296 56-200 (315)
192 COG1352 CheR Methylase of chem 98.7 7.3E-08 1.6E-12 87.2 9.7 106 164-274 96-241 (268)
193 TIGR00308 TRM1 tRNA(guanine-26 98.7 5.1E-08 1.1E-12 92.7 8.7 98 165-273 45-146 (374)
194 PF05958 tRNA_U5-meth_tr: tRNA 98.7 1.4E-07 3E-12 89.5 11.5 58 166-224 198-255 (352)
195 TIGR00755 ksgA dimethyladenosi 98.7 1.9E-07 4.2E-12 84.6 11.2 74 163-240 28-104 (253)
196 PF01564 Spermine_synth: Sperm 98.7 1.3E-07 2.8E-12 85.2 9.4 109 163-274 75-191 (246)
197 KOG1661 Protein-L-isoaspartate 98.6 1.1E-07 2.3E-12 81.3 8.2 113 150-275 67-194 (237)
198 COG3963 Phospholipid N-methylt 98.6 2.6E-07 5.6E-12 76.2 9.8 106 163-278 47-160 (194)
199 COG0421 SpeE Spermidine syntha 98.6 2.1E-07 4.6E-12 85.0 10.3 107 165-274 77-190 (282)
200 PF02527 GidB: rRNA small subu 98.6 4.2E-07 9.2E-12 78.0 11.2 107 167-284 51-158 (184)
201 TIGR00478 tly hemolysin TlyA f 98.6 2.9E-07 6.3E-12 81.7 9.8 89 163-273 74-170 (228)
202 PF09445 Methyltransf_15: RNA 98.6 7.5E-08 1.6E-12 80.5 5.5 116 167-285 2-131 (163)
203 PF05148 Methyltransf_8: Hypot 98.6 1.6E-07 3.5E-12 80.8 7.2 101 163-288 71-175 (219)
204 COG2521 Predicted archaeal met 98.6 8.2E-08 1.8E-12 83.3 5.2 112 163-278 133-249 (287)
205 KOG2940 Predicted methyltransf 98.5 4.6E-08 1E-12 84.5 3.2 113 163-284 71-185 (325)
206 PRK01544 bifunctional N5-gluta 98.5 6.9E-07 1.5E-11 88.7 12.0 116 164-279 347-467 (506)
207 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 4E-07 8.7E-12 83.8 9.2 129 163-291 84-236 (283)
208 COG0116 Predicted N6-adenine-s 98.5 1.2E-06 2.6E-11 82.2 11.9 115 160-275 187-345 (381)
209 KOG3045 Predicted RNA methylas 98.5 8.7E-07 1.9E-11 78.1 9.9 92 163-281 179-271 (325)
210 COG0030 KsgA Dimethyladenosine 98.5 4.3E-07 9.4E-12 81.4 7.8 77 163-242 29-107 (259)
211 PF01728 FtsJ: FtsJ-like methy 98.5 3.1E-07 6.7E-12 78.8 6.6 113 164-287 23-153 (181)
212 KOG1331 Predicted methyltransf 98.5 2.9E-07 6.2E-12 82.5 6.1 99 163-275 44-144 (293)
213 PRK00536 speE spermidine synth 98.5 1.6E-06 3.4E-11 78.4 10.9 98 163-275 71-172 (262)
214 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.6E-06 3.6E-11 89.4 12.4 113 163-278 189-351 (702)
215 KOG2187 tRNA uracil-5-methyltr 98.4 3.4E-07 7.3E-12 88.0 6.5 90 135-225 351-443 (534)
216 KOG2730 Methylase [General fun 98.4 4E-07 8.7E-12 78.3 5.2 74 164-238 94-173 (263)
217 PF07942 N2227: N2227-like pro 98.4 1.6E-06 3.4E-11 78.5 9.1 103 163-273 55-201 (270)
218 COG3897 Predicted methyltransf 98.4 1.4E-06 3E-11 73.9 7.8 104 163-277 78-182 (218)
219 TIGR02987 met_A_Alw26 type II 98.4 2.5E-06 5.4E-11 85.4 10.8 114 164-277 31-199 (524)
220 PF08123 DOT1: Histone methyla 98.3 2.4E-06 5.2E-11 74.6 8.8 102 163-272 41-156 (205)
221 KOG1663 O-methyltransferase [S 98.3 4.3E-06 9.4E-11 72.8 10.1 108 156-273 65-182 (237)
222 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1.4E-06 3E-11 78.4 6.6 112 163-277 55-202 (256)
223 COG0357 GidB Predicted S-adeno 98.3 3.7E-06 7.9E-11 73.6 8.9 106 165-281 68-175 (215)
224 KOG1269 SAM-dependent methyltr 98.3 2E-06 4.4E-11 81.3 7.0 107 161-274 107-215 (364)
225 COG0293 FtsJ 23S rRNA methylas 98.2 1E-05 2.2E-10 70.0 10.3 115 163-288 44-174 (205)
226 COG4076 Predicted RNA methylas 98.2 1.6E-06 3.5E-11 72.9 5.0 101 165-272 33-133 (252)
227 COG4262 Predicted spermidine s 98.2 1.1E-05 2.3E-10 74.6 10.6 140 130-275 252-408 (508)
228 TIGR03439 methyl_EasF probable 98.2 3.1E-05 6.7E-10 72.2 13.8 107 163-274 75-197 (319)
229 COG0500 SmtA SAM-dependent met 98.2 2E-05 4.3E-10 64.0 11.3 102 168-278 52-159 (257)
230 PF03141 Methyltransf_29: Puta 98.2 1.1E-06 2.3E-11 84.7 3.9 97 165-277 118-222 (506)
231 PF04816 DUF633: Family of unk 98.2 2.6E-05 5.6E-10 68.1 12.1 112 168-289 1-115 (205)
232 KOG3178 Hydroxyindole-O-methyl 98.2 1.2E-05 2.7E-10 74.3 10.3 103 163-277 176-278 (342)
233 TIGR00006 S-adenosyl-methyltra 98.2 3.5E-05 7.5E-10 71.1 12.7 74 163-237 19-99 (305)
234 KOG1122 tRNA and rRNA cytosine 98.1 6.9E-05 1.5E-09 70.7 12.5 124 163-286 240-383 (460)
235 KOG3987 Uncharacterized conser 98.0 8E-07 1.7E-11 75.8 -0.8 94 163-273 111-206 (288)
236 PF11968 DUF3321: Putative met 98.0 2.6E-05 5.6E-10 67.7 8.1 91 165-276 52-151 (219)
237 PF09243 Rsm22: Mitochondrial 98.0 6.3E-05 1.4E-09 68.9 10.8 118 163-287 32-153 (274)
238 TIGR01444 fkbM_fam methyltrans 98.0 2.5E-05 5.4E-10 64.0 7.3 59 167-225 1-60 (143)
239 KOG2915 tRNA(1-methyladenosine 98.0 8.2E-05 1.8E-09 66.3 10.5 107 153-272 95-207 (314)
240 PF01269 Fibrillarin: Fibrilla 98.0 9.9E-05 2.2E-09 64.4 10.8 100 163-273 72-177 (229)
241 COG0286 HsdM Type I restrictio 97.9 0.00014 3E-09 72.1 12.5 170 151-342 174-375 (489)
242 PF13679 Methyltransf_32: Meth 97.9 0.00011 2.3E-09 60.5 9.6 75 163-237 24-106 (141)
243 PRK11760 putative 23S rRNA C24 97.9 5.7E-05 1.2E-09 70.1 8.2 91 163-272 210-303 (357)
244 PF03059 NAS: Nicotianamine sy 97.9 0.00015 3.2E-09 66.0 10.7 108 164-277 120-233 (276)
245 COG0275 Predicted S-adenosylme 97.8 0.00029 6.2E-09 64.1 11.9 73 163-236 22-102 (314)
246 PF00398 RrnaAD: Ribosomal RNA 97.8 5.1E-05 1.1E-09 69.1 6.9 75 163-240 29-107 (262)
247 COG1189 Predicted rRNA methyla 97.8 0.00013 2.8E-09 64.1 8.2 96 163-273 78-177 (245)
248 PF07091 FmrO: Ribosomal RNA m 97.7 0.00011 2.5E-09 65.2 7.3 92 151-243 92-184 (251)
249 COG1889 NOP1 Fibrillarin-like 97.7 0.00066 1.4E-08 58.1 11.0 100 163-273 75-179 (231)
250 PF04672 Methyltransf_19: S-ad 97.7 0.0004 8.6E-09 62.6 10.1 110 165-278 69-194 (267)
251 KOG1709 Guanidinoacetate methy 97.6 0.00068 1.5E-08 58.6 10.8 103 163-273 100-205 (271)
252 PF05971 Methyltransf_10: Prot 97.6 0.00022 4.7E-09 65.5 8.4 78 165-243 103-190 (299)
253 PRK10742 putative methyltransf 97.6 0.0002 4.4E-09 63.8 7.7 79 163-242 85-176 (250)
254 KOG4589 Cell division protein 97.6 0.00095 2.1E-08 56.5 11.1 114 163-287 68-198 (232)
255 PF06962 rRNA_methylase: Putat 97.5 0.00069 1.5E-08 55.1 9.0 89 189-279 1-97 (140)
256 PF13578 Methyltransf_24: Meth 97.5 6.5E-05 1.4E-09 58.4 2.5 97 169-274 1-105 (106)
257 COG4798 Predicted methyltransf 97.4 0.0007 1.5E-08 57.6 7.9 114 161-274 45-166 (238)
258 KOG1562 Spermidine synthase [A 97.4 0.00079 1.7E-08 60.9 8.3 128 161-294 118-257 (337)
259 KOG2798 Putative trehalase [Ca 97.4 0.00085 1.9E-08 61.1 8.4 103 163-273 149-295 (369)
260 PF02005 TRM: N2,N2-dimethylgu 97.3 0.00051 1.1E-08 65.6 6.4 99 164-273 49-153 (377)
261 PF01861 DUF43: Protein of unk 97.3 0.011 2.3E-07 52.5 13.9 105 163-277 43-152 (243)
262 COG2384 Predicted SAM-dependen 97.3 0.0064 1.4E-07 53.0 12.1 116 163-288 15-133 (226)
263 PF01795 Methyltransf_5: MraW 97.3 0.00041 8.8E-09 64.1 5.1 83 153-237 10-100 (310)
264 KOG3115 Methyltransferase-like 97.2 0.0013 2.8E-08 56.3 7.1 121 165-287 61-197 (249)
265 KOG2198 tRNA cytosine-5-methyl 97.1 0.013 2.9E-07 54.8 13.6 122 161-282 152-304 (375)
266 KOG4058 Uncharacterized conser 97.1 0.0027 5.8E-08 51.7 7.8 106 163-279 71-177 (199)
267 PF11599 AviRa: RRNA methyltra 97.1 0.0042 9.1E-08 53.8 9.1 109 163-272 50-212 (246)
268 KOG3201 Uncharacterized conser 96.8 0.0012 2.5E-08 54.6 3.7 117 164-287 29-155 (201)
269 cd00315 Cyt_C5_DNA_methylase C 96.8 0.0079 1.7E-07 55.2 9.7 71 167-243 2-75 (275)
270 KOG2671 Putative RNA methylase 96.8 0.002 4.3E-08 59.5 5.5 118 157-275 201-355 (421)
271 PF03269 DUF268: Caenorhabditi 96.8 0.0011 2.4E-08 54.7 2.9 107 165-278 2-115 (177)
272 KOG1501 Arginine N-methyltrans 96.8 0.0031 6.8E-08 59.9 6.3 62 165-226 67-129 (636)
273 PF04989 CmcI: Cephalosporin h 96.7 0.005 1.1E-07 53.5 7.0 101 163-273 31-146 (206)
274 KOG1099 SAM-dependent methyltr 96.7 0.0054 1.2E-07 53.6 6.9 116 165-291 42-181 (294)
275 COG1867 TRM1 N2,N2-dimethylgua 96.7 0.0048 1E-07 57.7 7.0 98 165-273 53-153 (380)
276 PHA01634 hypothetical protein 96.6 0.0045 9.8E-08 49.1 5.5 49 163-211 27-75 (156)
277 KOG1227 Putative methyltransfe 96.6 0.0014 3E-08 59.4 2.7 104 163-277 193-299 (351)
278 COG5459 Predicted rRNA methyla 96.6 0.0067 1.5E-07 56.3 6.9 121 163-287 112-239 (484)
279 PF07757 AdoMet_MTase: Predict 96.5 0.0085 1.8E-07 46.2 5.8 32 164-196 58-89 (112)
280 KOG1596 Fibrillarin and relate 96.4 0.017 3.7E-07 50.9 8.0 101 162-273 154-260 (317)
281 KOG2793 Putative N2,N2-dimethy 96.4 0.038 8.3E-07 49.5 10.5 108 164-279 86-204 (248)
282 KOG1253 tRNA methyltransferase 96.3 0.0025 5.4E-08 61.6 2.4 103 160-273 105-215 (525)
283 PF00145 DNA_methylase: C-5 cy 96.3 0.011 2.5E-07 55.0 6.9 98 167-272 2-108 (335)
284 PF06859 Bin3: Bicoid-interact 96.0 0.00086 1.9E-08 51.9 -1.8 47 230-277 1-47 (110)
285 COG1064 AdhP Zn-dependent alco 96.0 0.035 7.5E-07 52.1 8.4 95 161-276 163-261 (339)
286 COG0270 Dcm Site-specific DNA 96.0 0.039 8.5E-07 51.9 8.9 103 165-273 3-115 (328)
287 PF03141 Methyltransf_29: Puta 95.9 0.011 2.5E-07 57.5 5.1 101 165-277 366-470 (506)
288 PRK11524 putative methyltransf 95.8 0.02 4.4E-07 52.7 6.1 46 163-209 207-252 (284)
289 PF04445 SAM_MT: Putative SAM- 95.7 0.05 1.1E-06 48.3 7.9 76 166-242 77-163 (234)
290 COG1568 Predicted methyltransf 95.7 0.23 5E-06 44.9 11.8 111 162-281 150-267 (354)
291 TIGR00675 dcm DNA-methyltransf 95.6 0.063 1.4E-06 50.3 8.6 70 168-243 1-72 (315)
292 PRK13699 putative methylase; P 95.5 0.035 7.7E-07 49.4 6.3 47 163-210 162-208 (227)
293 PF01555 N6_N4_Mtase: DNA meth 95.4 0.019 4.1E-07 50.4 4.3 42 163-205 190-231 (231)
294 PF02636 Methyltransf_28: Puta 95.4 0.046 1E-06 49.4 6.8 76 165-244 19-109 (252)
295 PRK09424 pntA NAD(P) transhydr 95.4 0.13 2.8E-06 51.1 10.4 98 163-275 163-286 (509)
296 PLN02668 indole-3-acetate carb 95.4 0.17 3.6E-06 48.5 10.6 51 227-277 159-240 (386)
297 cd08283 FDH_like_1 Glutathione 95.2 0.058 1.3E-06 51.8 7.3 108 162-275 182-307 (386)
298 COG3129 Predicted SAM-dependen 95.2 0.043 9.2E-07 48.2 5.4 80 163-243 77-166 (292)
299 COG1565 Uncharacterized conser 95.1 0.071 1.5E-06 50.1 7.2 78 163-244 76-163 (370)
300 KOG2920 Predicted methyltransf 95.1 0.012 2.7E-07 53.2 2.1 105 163-273 115-233 (282)
301 TIGR00497 hsdM type I restrict 95.0 0.67 1.5E-05 46.3 14.2 114 164-277 217-358 (501)
302 COG1063 Tdh Threonine dehydrog 94.9 0.27 5.8E-06 46.7 10.6 99 163-277 167-272 (350)
303 PRK10458 DNA cytosine methylas 94.8 0.21 4.6E-06 49.2 10.0 78 165-244 88-183 (467)
304 KOG0024 Sorbitol dehydrogenase 94.2 0.29 6.4E-06 45.3 8.7 100 161-277 166-276 (354)
305 KOG0822 Protein kinase inhibit 94.1 0.13 2.8E-06 50.5 6.5 105 165-275 368-479 (649)
306 PF03492 Methyltransf_7: SAM d 93.9 0.29 6.4E-06 46.1 8.4 115 163-277 15-186 (334)
307 cd08254 hydroxyacyl_CoA_DH 6-h 93.4 0.58 1.3E-05 43.4 9.7 93 162-275 163-264 (338)
308 KOG2078 tRNA modification enzy 93.4 0.038 8.3E-07 52.6 1.6 62 163-225 248-311 (495)
309 COG1255 Uncharacterized protei 93.2 0.61 1.3E-05 36.5 7.5 62 164-237 13-77 (129)
310 PF10237 N6-adenineMlase: Prob 93.1 1.7 3.6E-05 36.5 10.8 105 163-284 24-133 (162)
311 PF11312 DUF3115: Protein of u 93.1 0.22 4.8E-06 45.9 5.9 114 163-278 85-246 (315)
312 PRK09880 L-idonate 5-dehydroge 92.9 0.31 6.7E-06 45.9 7.0 96 163-275 168-267 (343)
313 COG4301 Uncharacterized conser 92.6 2.8 6.1E-05 37.5 11.8 115 163-283 77-202 (321)
314 COG4627 Uncharacterized protei 92.5 0.032 6.9E-07 45.9 -0.3 45 228-277 45-89 (185)
315 PF05711 TylF: Macrocin-O-meth 92.0 0.88 1.9E-05 41.0 8.3 116 164-290 74-226 (248)
316 COG3510 CmcI Cephalosporin hyd 91.8 0.89 1.9E-05 39.0 7.4 102 163-276 68-182 (237)
317 TIGR01202 bchC 2-desacetyl-2-h 91.7 0.67 1.5E-05 43.0 7.5 87 164-275 144-232 (308)
318 KOG2352 Predicted spermine/spe 91.5 0.46 9.9E-06 46.4 6.2 127 163-290 294-435 (482)
319 cd08237 ribitol-5-phosphate_DH 91.5 1.4 3.1E-05 41.5 9.6 93 163-275 162-257 (341)
320 cd08230 glucose_DH Glucose deh 91.5 1.1 2.3E-05 42.4 8.8 95 163-275 171-270 (355)
321 PRK05786 fabG 3-ketoacyl-(acyl 91.2 4.4 9.6E-05 35.5 12.0 107 164-274 4-135 (238)
322 PTZ00357 methyltransferase; Pr 91.1 1.4 3E-05 45.0 9.2 99 166-269 702-830 (1072)
323 PF03686 UPF0146: Uncharacteri 90.9 0.29 6.3E-06 39.0 3.5 64 163-238 12-78 (127)
324 PF02254 TrkA_N: TrkA-N domain 90.5 1.2 2.7E-05 34.5 7.0 94 173-283 4-105 (116)
325 cd05188 MDR Medium chain reduc 90.4 0.85 1.8E-05 40.6 6.8 92 163-276 133-234 (271)
326 PF00107 ADH_zinc_N: Zinc-bind 90.4 0.57 1.2E-05 37.1 5.0 84 174-277 1-92 (130)
327 KOG3924 Putative protein methy 90.1 1.4 3E-05 42.0 7.8 108 162-277 190-311 (419)
328 PRK06701 short chain dehydroge 90.0 5.4 0.00012 36.6 11.8 110 163-274 44-181 (290)
329 TIGR03366 HpnZ_proposed putati 89.7 0.7 1.5E-05 42.1 5.7 94 163-274 119-218 (280)
330 TIGR02822 adh_fam_2 zinc-bindi 89.7 2.6 5.7E-05 39.4 9.7 91 162-275 163-255 (329)
331 KOG2651 rRNA adenine N-6-methy 89.6 0.65 1.4E-05 43.9 5.2 46 160-206 149-195 (476)
332 PRK08265 short chain dehydroge 89.4 7.1 0.00015 34.9 12.0 71 164-239 5-89 (261)
333 TIGR00561 pntA NAD(P) transhyd 89.0 2 4.3E-05 42.9 8.5 95 163-272 162-282 (511)
334 PRK05876 short chain dehydroge 89.0 6.9 0.00015 35.5 11.7 75 164-240 5-93 (275)
335 KOG1098 Putative SAM-dependent 88.9 0.82 1.8E-05 45.8 5.6 112 163-286 43-171 (780)
336 PF10354 DUF2431: Domain of un 88.9 4.7 0.0001 34.0 9.6 107 171-279 3-130 (166)
337 PRK07109 short chain dehydroge 88.7 7 0.00015 36.7 11.8 75 164-240 7-95 (334)
338 TIGR03451 mycoS_dep_FDH mycoth 88.6 3.8 8.2E-05 38.7 10.0 97 162-275 174-277 (358)
339 PRK12939 short chain dehydroge 88.5 7 0.00015 34.4 11.2 73 164-239 6-93 (250)
340 PRK07533 enoyl-(acyl carrier p 88.4 11 0.00023 33.8 12.4 75 163-240 8-98 (258)
341 cd00401 AdoHcyase S-adenosyl-L 88.4 2.9 6.2E-05 40.7 8.9 88 163-275 200-290 (413)
342 PLN03154 putative allyl alcoho 88.3 3.6 7.9E-05 38.8 9.6 95 162-274 156-258 (348)
343 KOG2912 Predicted DNA methylas 88.0 0.92 2E-05 41.9 4.9 72 168-240 106-188 (419)
344 TIGR00027 mthyl_TIGR00027 meth 88.0 9.2 0.0002 34.7 11.6 106 165-277 82-200 (260)
345 cd08255 2-desacetyl-2-hydroxye 88.0 4.3 9.4E-05 36.5 9.6 93 163-274 96-190 (277)
346 PRK13699 putative methylase; P 87.9 1.4 3E-05 39.2 6.1 72 215-287 2-85 (227)
347 PRK11524 putative methyltransf 87.8 1.2 2.7E-05 40.9 5.9 62 214-275 8-81 (284)
348 PRK06194 hypothetical protein; 87.6 9.1 0.0002 34.6 11.6 74 165-240 6-93 (287)
349 PRK07523 gluconate 5-dehydroge 87.6 12 0.00025 33.2 12.1 76 163-240 8-97 (255)
350 cd08281 liver_ADH_like1 Zinc-d 87.4 1.1 2.3E-05 42.7 5.5 97 162-275 189-291 (371)
351 cd08232 idonate-5-DH L-idonate 87.3 2.3 4.9E-05 39.7 7.6 92 164-274 165-262 (339)
352 PRK08589 short chain dehydroge 87.3 13 0.00027 33.6 12.2 74 164-240 5-92 (272)
353 PRK08324 short chain dehydroge 87.1 6.6 0.00014 40.8 11.4 108 164-274 421-557 (681)
354 cd08239 THR_DH_like L-threonin 87.0 3.6 7.7E-05 38.4 8.7 96 163-275 162-263 (339)
355 PRK08213 gluconate 5-dehydroge 87.0 10 0.00023 33.6 11.4 75 163-240 10-99 (259)
356 PRK07576 short chain dehydroge 86.9 10 0.00022 34.0 11.4 74 163-238 7-94 (264)
357 cd08234 threonine_DH_like L-th 86.9 6.2 0.00013 36.5 10.2 95 162-275 157-258 (334)
358 PRK07806 short chain dehydroge 86.6 11 0.00023 33.2 11.2 108 164-273 5-133 (248)
359 cd08245 CAD Cinnamyl alcohol d 86.5 5.5 0.00012 36.8 9.7 92 163-274 161-256 (330)
360 KOG1201 Hydroxysteroid 17-beta 86.4 3.6 7.8E-05 37.8 7.9 75 163-240 36-124 (300)
361 PRK01747 mnmC bifunctional tRN 86.1 1.9 4.2E-05 44.6 6.8 107 163-275 56-207 (662)
362 PRK13394 3-hydroxybutyrate deh 86.0 16 0.00034 32.4 12.1 75 164-240 6-94 (262)
363 PF03514 GRAS: GRAS domain fam 85.9 13 0.00028 35.7 11.9 108 163-272 109-242 (374)
364 PRK05650 short chain dehydroge 85.8 17 0.00036 32.6 12.2 72 167-240 2-87 (270)
365 PRK09242 tropinone reductase; 85.7 16 0.00035 32.3 12.0 76 164-240 8-98 (257)
366 TIGR02825 B4_12hDH leukotriene 85.7 6.6 0.00014 36.4 9.7 94 162-274 136-237 (325)
367 PRK09260 3-hydroxybutyryl-CoA 85.6 6.2 0.00013 36.2 9.3 108 167-286 3-129 (288)
368 PRK10309 galactitol-1-phosphat 85.4 1.8 3.9E-05 40.7 5.8 95 163-274 159-260 (347)
369 KOG0821 Predicted ribosomal RN 85.4 1.3 2.7E-05 38.9 4.2 63 163-226 49-111 (326)
370 PRK08085 gluconate 5-dehydroge 85.1 19 0.00042 31.8 12.2 75 164-240 8-96 (254)
371 PRK09072 short chain dehydroge 85.1 17 0.00037 32.4 11.8 74 164-240 4-90 (263)
372 PRK07417 arogenate dehydrogena 85.0 6.9 0.00015 35.8 9.3 100 167-288 2-103 (279)
373 COG0604 Qor NADPH:quinone redu 84.9 1.9 4E-05 40.6 5.6 96 162-276 140-243 (326)
374 PRK07102 short chain dehydroge 84.9 5.8 0.00013 34.9 8.6 72 166-238 2-84 (243)
375 cd08293 PTGR2 Prostaglandin re 84.8 7.3 0.00016 36.3 9.6 90 166-274 156-254 (345)
376 PRK06181 short chain dehydroge 84.4 22 0.00048 31.5 12.3 72 166-239 2-87 (263)
377 PF05206 TRM13: Methyltransfer 84.3 6.4 0.00014 35.7 8.5 64 163-227 17-87 (259)
378 PRK12937 short chain dehydroge 84.1 22 0.00048 31.1 12.0 110 164-275 4-140 (245)
379 cd05278 FDH_like Formaldehyde 84.0 2 4.2E-05 40.2 5.3 96 162-274 165-267 (347)
380 PRK08415 enoyl-(acyl carrier p 83.9 28 0.0006 31.6 12.8 108 164-274 4-143 (274)
381 TIGR03201 dearomat_had 6-hydro 83.9 7.5 0.00016 36.6 9.3 43 162-205 164-208 (349)
382 PRK06128 oxidoreductase; Provi 83.6 21 0.00045 32.8 11.9 108 164-273 54-190 (300)
383 PRK08594 enoyl-(acyl carrier p 83.5 25 0.00053 31.4 12.2 75 164-239 6-96 (257)
384 PRK06035 3-hydroxyacyl-CoA deh 83.5 12 0.00025 34.5 10.1 106 166-284 4-131 (291)
385 cd05285 sorbitol_DH Sorbitol d 83.3 3 6.6E-05 39.0 6.3 97 161-274 159-265 (343)
386 PLN02740 Alcohol dehydrogenase 83.3 6.1 0.00013 37.8 8.5 95 161-274 195-300 (381)
387 COG2933 Predicted SAM-dependen 83.3 4.2 9.2E-05 36.7 6.6 68 163-238 210-278 (358)
388 PRK06505 enoyl-(acyl carrier p 83.1 25 0.00054 31.7 12.1 74 164-240 6-95 (271)
389 PRK08226 short chain dehydroge 83.0 27 0.0006 30.9 12.3 74 164-240 5-92 (263)
390 PRK07904 short chain dehydroge 83.0 6.3 0.00014 35.3 8.0 76 163-238 6-95 (253)
391 PLN02989 cinnamyl-alcohol dehy 82.9 17 0.00037 33.6 11.2 75 164-240 4-87 (325)
392 PF07279 DUF1442: Protein of u 82.8 18 0.00038 31.8 10.2 74 163-236 40-121 (218)
393 PRK05872 short chain dehydroge 82.8 18 0.00039 33.1 11.2 75 163-240 7-95 (296)
394 PRK07530 3-hydroxybutyryl-CoA 82.6 25 0.00054 32.2 12.0 104 166-282 5-127 (292)
395 PRK07832 short chain dehydroge 82.6 25 0.00053 31.6 11.9 72 167-239 2-87 (272)
396 PRK08945 putative oxoacyl-(acy 82.5 11 0.00023 33.3 9.3 76 163-239 10-101 (247)
397 cd08295 double_bond_reductase_ 82.5 9.6 0.00021 35.5 9.4 95 162-274 149-251 (338)
398 PF02737 3HCDH_N: 3-hydroxyacy 81.9 25 0.00054 29.9 10.9 107 167-286 1-126 (180)
399 COG0677 WecC UDP-N-acetyl-D-ma 81.8 11 0.00023 36.3 9.0 113 165-287 9-143 (436)
400 TIGR02819 fdhA_non_GSH formald 81.6 9.2 0.0002 36.9 9.0 108 162-275 183-300 (393)
401 PRK08339 short chain dehydroge 81.4 9.3 0.0002 34.3 8.6 75 164-239 7-94 (263)
402 cd08285 NADP_ADH NADP(H)-depen 81.4 13 0.00027 34.9 9.8 96 162-274 164-266 (351)
403 PRK08217 fabG 3-ketoacyl-(acyl 81.3 9.2 0.0002 33.6 8.4 74 164-239 4-91 (253)
404 PRK07985 oxidoreductase; Provi 81.3 32 0.0007 31.4 12.3 109 163-273 47-184 (294)
405 PRK08703 short chain dehydroge 81.2 11 0.00024 33.0 8.8 75 164-239 5-96 (239)
406 PRK05993 short chain dehydroge 81.1 24 0.00052 31.8 11.3 68 165-240 4-86 (277)
407 PRK06079 enoyl-(acyl carrier p 81.1 33 0.00072 30.4 12.0 72 164-240 6-93 (252)
408 PRK08293 3-hydroxybutyryl-CoA 81.0 19 0.00041 33.0 10.6 107 166-284 4-130 (287)
409 PRK05808 3-hydroxybutyryl-CoA 80.9 7.9 0.00017 35.3 8.0 107 167-286 5-130 (282)
410 PRK15001 SAM-dependent 23S rib 80.9 20 0.00043 34.5 10.8 97 167-277 47-145 (378)
411 PRK07819 3-hydroxybutyryl-CoA 80.9 14 0.00029 34.1 9.5 108 166-286 6-133 (286)
412 PF11899 DUF3419: Protein of u 80.8 2.8 6E-05 40.3 5.0 62 211-277 273-337 (380)
413 PRK06125 short chain dehydroge 80.8 13 0.00027 33.2 9.2 75 164-239 6-90 (259)
414 PRK09291 short chain dehydroge 80.5 11 0.00025 33.2 8.8 73 166-240 3-83 (257)
415 PRK03659 glutathione-regulated 80.5 11 0.00024 38.6 9.6 93 165-277 400-501 (601)
416 PLN02827 Alcohol dehydrogenase 80.3 9 0.0002 36.6 8.5 98 161-275 190-296 (378)
417 PRK06182 short chain dehydroge 80.2 22 0.00047 31.9 10.6 68 165-240 3-84 (273)
418 PRK05867 short chain dehydroge 79.8 9.7 0.00021 33.8 8.1 75 164-240 8-96 (253)
419 PRK07066 3-hydroxybutyryl-CoA 79.8 16 0.00035 34.3 9.7 109 166-286 8-131 (321)
420 PRK06500 short chain dehydroge 79.7 33 0.00072 30.0 11.5 72 164-240 5-90 (249)
421 PRK12744 short chain dehydroge 79.5 42 0.00091 29.7 12.2 107 164-272 7-143 (257)
422 COG0287 TyrA Prephenate dehydr 79.5 8.3 0.00018 35.4 7.5 108 166-292 4-114 (279)
423 PRK05708 2-dehydropantoate 2-r 79.5 31 0.00067 32.0 11.5 97 166-273 3-103 (305)
424 PRK07890 short chain dehydroge 79.3 12 0.00026 33.1 8.5 75 164-240 4-92 (258)
425 PRK12747 short chain dehydroge 79.2 40 0.00088 29.6 11.9 107 165-273 4-143 (252)
426 cd08294 leukotriene_B4_DH_like 78.9 15 0.00032 33.8 9.3 93 162-273 141-240 (329)
427 PRK12742 oxidoreductase; Provi 78.8 39 0.00084 29.3 11.6 103 164-273 5-130 (237)
428 KOG2539 Mitochondrial/chloropl 78.2 11 0.00023 36.9 8.0 120 163-287 199-329 (491)
429 PRK06484 short chain dehydroge 78.1 30 0.00066 34.4 11.8 107 163-274 267-400 (520)
430 PRK05693 short chain dehydroge 78.0 24 0.00053 31.6 10.2 66 167-240 3-82 (274)
431 PRK07677 short chain dehydroge 77.9 12 0.00026 33.1 8.1 72 166-239 2-87 (252)
432 KOG1205 Predicted dehydrogenas 77.9 43 0.00093 30.8 11.5 79 163-242 10-103 (282)
433 cd08236 sugar_DH NAD(P)-depend 77.8 5.1 0.00011 37.3 5.8 93 163-274 158-258 (343)
434 PRK06172 short chain dehydroge 77.8 13 0.00029 32.8 8.3 75 164-240 6-94 (253)
435 PRK06124 gluconate 5-dehydroge 77.8 14 0.00029 32.8 8.4 75 163-239 9-97 (256)
436 KOG0725 Reductases with broad 77.6 47 0.001 30.2 11.9 77 163-240 6-99 (270)
437 PRK12743 oxidoreductase; Provi 77.0 44 0.00094 29.6 11.5 74 165-240 2-90 (256)
438 PRK15057 UDP-glucose 6-dehydro 76.6 27 0.00058 33.7 10.4 116 167-287 2-132 (388)
439 PRK06197 short chain dehydroge 76.6 56 0.0012 29.9 12.4 77 163-240 14-105 (306)
440 PRK07035 short chain dehydroge 76.6 15 0.00033 32.4 8.3 75 163-239 6-94 (252)
441 TIGR02632 RhaD_aldol-ADH rhamn 76.5 58 0.0013 33.9 13.6 76 164-240 413-503 (676)
442 PRK06940 short chain dehydroge 76.4 25 0.00054 31.8 9.8 71 166-240 3-86 (275)
443 cd08242 MDR_like Medium chain 76.3 19 0.00042 33.0 9.3 88 162-273 153-244 (319)
444 PRK06101 short chain dehydroge 76.3 46 0.001 29.1 11.3 55 166-226 2-59 (240)
445 PF00106 adh_short: short chai 76.2 12 0.00025 30.7 7.0 73 167-240 2-90 (167)
446 cd08238 sorbose_phosphate_red 76.2 11 0.00023 36.5 7.7 98 162-273 173-287 (410)
447 cd08261 Zn_ADH7 Alcohol dehydr 76.1 5.3 0.00012 37.1 5.4 95 162-274 157-258 (337)
448 PRK11064 wecC UDP-N-acetyl-D-m 76.0 18 0.00039 35.3 9.2 112 166-287 4-134 (415)
449 PRK05866 short chain dehydroge 75.9 19 0.0004 33.1 8.9 74 164-239 39-126 (293)
450 PRK07063 short chain dehydroge 75.9 15 0.00033 32.6 8.2 75 164-240 6-96 (260)
451 TIGR02354 thiF_fam2 thiamine b 75.9 45 0.00098 28.9 10.8 95 163-266 19-137 (200)
452 cd08278 benzyl_alcohol_DH Benz 75.8 5 0.00011 38.0 5.2 94 162-275 184-286 (365)
453 COG1748 LYS9 Saccharopine dehy 75.8 9.8 0.00021 36.6 7.0 68 166-237 2-75 (389)
454 PF11899 DUF3419: Protein of u 75.7 7.5 0.00016 37.4 6.3 45 163-208 34-78 (380)
455 PF03721 UDPG_MGDP_dh_N: UDP-g 75.6 16 0.00035 31.3 7.8 113 167-284 2-132 (185)
456 PRK06997 enoyl-(acyl carrier p 75.5 51 0.0011 29.4 11.6 74 164-240 5-94 (260)
457 PRK07097 gluconate 5-dehydroge 75.2 17 0.00036 32.5 8.3 75 164-240 9-97 (265)
458 PLN02545 3-hydroxybutyryl-CoA 74.9 38 0.00083 31.1 10.7 106 166-284 5-129 (295)
459 TIGR02356 adenyl_thiF thiazole 74.9 13 0.00027 32.3 7.1 34 163-196 19-54 (202)
460 PRK07791 short chain dehydroge 74.7 22 0.00048 32.4 9.0 76 163-240 4-102 (286)
461 PRK05854 short chain dehydroge 74.3 33 0.00071 31.8 10.2 77 163-240 12-103 (313)
462 PRK07984 enoyl-(acyl carrier p 74.2 65 0.0014 28.9 11.9 74 164-240 5-94 (262)
463 PRK08159 enoyl-(acyl carrier p 74.2 67 0.0014 28.9 12.6 75 163-240 8-98 (272)
464 PRK08862 short chain dehydroge 73.8 18 0.00038 31.8 7.9 73 164-238 4-91 (227)
465 PF02086 MethyltransfD12: D12 73.6 3.7 8E-05 36.8 3.5 44 164-208 20-63 (260)
466 PRK07478 short chain dehydroge 73.6 20 0.00044 31.7 8.3 75 164-240 5-93 (254)
467 PRK08177 short chain dehydroge 73.6 34 0.00074 29.6 9.7 67 166-239 2-80 (225)
468 PRK06484 short chain dehydroge 73.5 37 0.0008 33.8 11.0 72 164-240 4-89 (520)
469 PRK07454 short chain dehydroge 73.5 21 0.00046 31.2 8.4 74 164-240 5-93 (241)
470 COG0863 DNA modification methy 73.4 9.2 0.0002 35.0 6.2 47 163-210 221-267 (302)
471 cd08263 Zn_ADH10 Alcohol dehyd 73.3 20 0.00044 33.8 8.7 93 163-274 186-287 (367)
472 PRK06953 short chain dehydroge 73.0 60 0.0013 27.9 11.5 66 167-240 3-80 (222)
473 TIGR00518 alaDH alanine dehydr 73.0 9.1 0.0002 36.7 6.2 99 164-274 166-267 (370)
474 PRK11154 fadJ multifunctional 72.6 38 0.00082 35.5 11.1 110 165-287 309-438 (708)
475 PRK10669 putative cation:proto 72.5 24 0.00052 35.7 9.5 63 166-236 418-487 (558)
476 KOG2015 NEDD8-activating compl 72.4 39 0.00084 31.7 9.6 77 165-243 40-140 (422)
477 PRK07889 enoyl-(acyl carrier p 72.3 58 0.0013 28.9 11.1 106 164-274 6-145 (256)
478 PRK12548 shikimate 5-dehydroge 72.2 75 0.0016 29.2 11.9 116 164-288 125-250 (289)
479 PRK06077 fabG 3-ketoacyl-(acyl 72.1 67 0.0015 28.0 11.9 109 165-275 6-141 (252)
480 cd05281 TDH Threonine dehydrog 72.1 11 0.00024 35.1 6.5 96 163-275 162-263 (341)
481 cd08279 Zn_ADH_class_III Class 72.0 9.5 0.00021 36.0 6.1 95 162-275 180-283 (363)
482 PRK08063 enoyl-(acyl carrier p 72.0 68 0.0015 28.0 11.6 73 165-239 4-91 (250)
483 PRK03562 glutathione-regulated 72.0 25 0.00053 36.3 9.4 64 165-236 400-470 (621)
484 cd08277 liver_alcohol_DH_like 71.9 9.7 0.00021 36.0 6.2 97 162-275 182-287 (365)
485 PRK07502 cyclohexadienyl dehyd 71.6 20 0.00043 33.2 8.0 102 166-287 7-111 (307)
486 cd08231 MDR_TM0436_like Hypoth 71.6 35 0.00077 32.0 9.9 96 163-275 176-281 (361)
487 PRK05396 tdh L-threonine 3-deh 71.6 20 0.00044 33.3 8.2 96 163-275 162-264 (341)
488 COG0686 Ald Alanine dehydrogen 71.6 12 0.00026 34.9 6.2 99 164-273 167-267 (371)
489 cd08300 alcohol_DH_class_III c 71.5 24 0.00051 33.5 8.7 97 162-275 184-289 (368)
490 PRK06603 enoyl-(acyl carrier p 71.4 75 0.0016 28.3 12.6 74 164-240 7-96 (260)
491 KOG1209 1-Acyl dihydroxyaceton 71.4 15 0.00032 32.5 6.3 68 163-238 5-89 (289)
492 PRK07814 short chain dehydroge 71.2 24 0.00052 31.5 8.3 74 164-239 9-96 (263)
493 KOG2360 Proliferation-associat 71.2 7.8 0.00017 36.9 5.0 78 163-240 212-294 (413)
494 PRK07774 short chain dehydroge 71.2 29 0.00063 30.4 8.8 75 164-240 5-93 (250)
495 PRK06113 7-alpha-hydroxysteroi 71.1 24 0.00052 31.2 8.3 75 163-239 9-97 (255)
496 TIGR00692 tdh L-threonine 3-de 71.0 43 0.00094 31.1 10.3 96 163-275 160-262 (340)
497 PRK06130 3-hydroxybutyryl-CoA 70.9 32 0.00069 31.8 9.2 40 166-206 5-46 (311)
498 PRK11730 fadB multifunctional 70.8 43 0.00093 35.1 11.0 109 166-287 314-441 (715)
499 PLN02896 cinnamyl-alcohol dehy 70.7 64 0.0014 30.2 11.5 74 163-240 8-89 (353)
500 PRK08644 thiamine biosynthesis 70.6 45 0.00098 29.1 9.6 34 163-196 26-61 (212)
No 1
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=278.19 Aligned_cols=222 Identities=59% Similarity=0.968 Sum_probs=196.4
Q ss_pred CCCCCCCCCCCCCcCCcHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchh
Q 019324 78 SDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVE 157 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~ 157 (343)
++.+++ .++..|++|+++|||+.|+.+..||.++++.|++||+++..+++..|+...+. +.+ +.
T Consensus 2 sdm~~~-adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r--v~------------ 65 (227)
T KOG1271|consen 2 SDMSEP-ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR--VS------------ 65 (227)
T ss_pred Cccccc-ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh--hc------------
Confidence 344555 56999999999999999999999999999999999999999999999988763 111 00
Q ss_pred hhhccCCCCeEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCc-cCCCccEE
Q 019324 158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLV 234 (343)
Q Consensus 158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~-~~~~fD~V 234 (343)
....+|||+|||+|.++..|++.|+. .++|+|+|+.+++.|+..++..++++ |+|.+.|+.+.. ..+.||+|
T Consensus 66 -----~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv 140 (227)
T KOG1271|consen 66 -----KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV 140 (227)
T ss_pred -----ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE
Confidence 22349999999999999999999876 59999999999999999999999876 999999999965 47899999
Q ss_pred EECccccccccCCCChhhH-HHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhccccccccchhhhhcccCCCCe
Q 019324 235 MDKGTLDAIGLHPDGPLKR-IMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPF 313 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~-~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 313 (343)
+.++++++|.++|+.+..+ ..++..+.++|+|||+++|++||++.+++++.+.. .+|
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~----------------------~~f 198 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN----------------------FNF 198 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc----------------------CCe
Confidence 9999999999999887655 67899999999999999999999999999998873 348
Q ss_pred eEecccccCCcccccCccCeeEeEEEEeeC
Q 019324 314 RYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343 (343)
Q Consensus 314 ~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~ 343 (343)
+++..++. |.|+|+|+.|+++++|+|+||
T Consensus 199 ~~~~tvp~-ptF~FgG~~G~tvt~vaF~~k 227 (227)
T KOG1271|consen 199 EYLSTVPT-PTFMFGGSVGSTVTSVAFLRK 227 (227)
T ss_pred EEEEeecc-ceEEeccccccEEEEEEEecC
Confidence 88888885 699999999999999999986
No 2
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.5e-20 Score=170.24 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=154.6
Q ss_pred cccceeecccCCCCChhhhhhhHHHHHHhcccccccCCCCCCCCCCCCCCCCCcCCcHHhHHHHHHHHHHhhhhcCCcce
Q 019324 38 ADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE 117 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~~~ 117 (343)
-+...++++|....+.++..+.....+...... +.....+ -..+-|...|+ .++++-+.++
T Consensus 53 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------~~e~DW~~~wk----~~~~P~rig~ 113 (300)
T COG2264 53 WDGVKVKALFPADTDLALLLAELEALLALLELF-----AHVIEQE----------EDEEDWEREWK----KYFHPVRIGE 113 (300)
T ss_pred cccceeEeeecccchHHHHHHHHHHHhcccccc-----cceeEee----------cChHHHHHHHH----hcCCcEEeee
Confidence 344468899999998888888877777662221 1111111 11222666555 5555555555
Q ss_pred E-EeCCchhHHHHHHH------hhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCC
Q 019324 118 V-WFGADVMDVVASWT------KSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFS 188 (343)
Q Consensus 118 ~-wf~~~~~~~~~~w~------~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~ 188 (343)
. |.. +.|. .+.++.+.+++.++++.| ++.+|+++++.. .++.+|||+|||+|.+++..++.|+.
T Consensus 114 ~f~I~-------Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~ 186 (300)
T COG2264 114 RFVIV-------PSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK 186 (300)
T ss_pred eEEEC-------CCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc
Confidence 2 222 2344 356688999999999999 999999999877 88999999999999999999999998
Q ss_pred cEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC
Q 019324 189 DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG 267 (343)
Q Consensus 189 ~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg 267 (343)
+++|+|++|.+++.+++|+..|+++. +.....+.......++||+|++|-..+-+ ..+...+.++||||
T Consensus 187 ~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl----------~~La~~~~~~lkpg 256 (300)
T COG2264 187 KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVL----------VELAPDIKRLLKPG 256 (300)
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHH----------HHHHHHHHHHcCCC
Confidence 99999999999999999999998853 33444444444445799999998654333 46779999999999
Q ss_pred cEEEEEecCCChHHHHH
Q 019324 268 GLLVITSCNSTKDELVH 284 (343)
Q Consensus 268 G~lii~~~~~~~~~~~~ 284 (343)
|+++++..-....+.+.
T Consensus 257 g~lIlSGIl~~q~~~V~ 273 (300)
T COG2264 257 GRLILSGILEDQAESVA 273 (300)
T ss_pred ceEEEEeehHhHHHHHH
Confidence 99999987666544433
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.81 E-value=8.6e-20 Score=161.32 Aligned_cols=114 Identities=21% Similarity=0.365 Sum_probs=101.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l 240 (343)
.++.+|||+|||||.++..+++. |..+|+|+|+|+.|++.+++++...+..+++|+++|+..+++ +++||+|.+...+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 36899999999999999999998 545999999999999999999998777679999999999997 7999999999999
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~ 283 (343)
..+ .+..+.|++++|+|||||++++...........
T Consensus 130 rnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 130 RNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred hcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 888 477789999999999999999987776554433
No 4
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.81 E-value=5.4e-20 Score=168.31 Aligned_cols=170 Identities=21% Similarity=0.345 Sum_probs=120.1
Q ss_pred HHhHHHHHHHHHHhhhhcCCcce-EEeCCchhHHHHHHHhhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEE
Q 019324 95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDI 171 (343)
Q Consensus 95 ~~~Wd~~y~~~~~~f~~~~~~~~-~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDi 171 (343)
.+-|...|++....+. .+. .|.-+. .+....-..+..+.+.+++.++++.| ++++|+++++.. .++.+|||+
T Consensus 94 ~~dW~~~Wk~~~~P~~----vg~~~~I~P~-w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDv 168 (295)
T PF06325_consen 94 EEDWEEAWKKYFKPIR----VGDRLVIVPS-WEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDV 168 (295)
T ss_dssp HHCHHHHHHHH---EE----ECTTEEEEET-T----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEE
T ss_pred cccchHHHHhcCccEE----ECCcEEEECC-CcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 4458888776555544 333 222111 11111122344578899999999999 999999999877 678899999
Q ss_pred ccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccccCCCChh
Q 019324 172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 251 (343)
Q Consensus 172 GcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~ 251 (343)
|||+|.+++..++.|+.+|+|+|++|.+++.|++|+..+++.. .+......+ ...++||+|++|-..+.+
T Consensus 169 G~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-~~~~~~dlvvANI~~~vL-------- 238 (295)
T PF06325_consen 169 GCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-LVEGKFDLVVANILADVL-------- 238 (295)
T ss_dssp S-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC-TCCS-EEEEEEES-HHHH--------
T ss_pred CCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc-cccccCCEEEECCCHHHH--------
Confidence 9999999999999998899999999999999999999999854 333332222 234899999998765443
Q ss_pred hHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 252 KRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 252 ~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
..++..+.++|+|||+++++..-.....
T Consensus 239 --~~l~~~~~~~l~~~G~lIlSGIl~~~~~ 266 (295)
T PF06325_consen 239 --LELAPDIASLLKPGGYLILSGILEEQED 266 (295)
T ss_dssp --HHHHHHCHHHEEEEEEEEEEEEEGGGHH
T ss_pred --HHHHHHHHHhhCCCCEEEEccccHHHHH
Confidence 4677899999999999999877665443
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.80 E-value=2.7e-19 Score=159.46 Aligned_cols=151 Identities=24% Similarity=0.384 Sum_probs=91.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||||.++..+++. + ..+|+|+|+|+.|++.|+++....+..+|+++++|+.++++ +++||+|++...
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 56889999999999999999886 3 24899999999999999999998877799999999999986 689999999988
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhccccccccchhhhhcccCCCCeeEecc-
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNH- 318 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~- 318 (343)
+..+ .+....+++++|+|||||++++...+.....+...+..+.... -.|............|.|+..
T Consensus 126 lrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~----ilP~~g~l~~~~~~~Y~yL~~S 194 (233)
T PF01209_consen 126 LRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKY----ILPLIGRLLSGDREAYRYLPES 194 (233)
T ss_dssp GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------
T ss_pred HHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecc----cccccccccccccccccccccc
Confidence 8777 3566789999999999999999887777666666554333222 234444334444456777666
Q ss_pred cccCCc
Q 019324 319 VRTYPT 324 (343)
Q Consensus 319 ~~~~p~ 324 (343)
+..||.
T Consensus 195 i~~f~~ 200 (233)
T PF01209_consen 195 IRRFPS 200 (233)
T ss_dssp ------
T ss_pred cccccc
Confidence 555553
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=5.4e-18 Score=133.94 Aligned_cols=108 Identities=31% Similarity=0.512 Sum_probs=88.4
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccC-CCCccCCCccEEEECc-c
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDV-LDTKLERQFQLVMDKG-T 239 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~-~~~~~~~~fD~V~~~~-~ 239 (343)
|+.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...+. ++++++++|+ ......+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 4679999999999999999993 334899999999999999999955544 6899999999 4444567899999998 5
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++++. ...+...+++++.+.|+|||++++.++
T Consensus 81 ~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLL----PLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccc----chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 55342 114667889999999999999999764
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.77 E-value=1.2e-18 Score=151.50 Aligned_cols=114 Identities=31% Similarity=0.475 Sum_probs=100.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||.|.++..||+.|+ .|+|+|+++.+|+.|+..+...++ ++++.+..+.++... ++||+|+|..+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4688999999999999999999996 899999999999999999999887 677888877776543 7999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~ 285 (343)
|+ .+...+++++.+++||||+++++++|.+.......
T Consensus 136 Hv-------~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~ 172 (243)
T COG2227 136 HV-------PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA 172 (243)
T ss_pred cc-------CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH
Confidence 99 56667999999999999999999999986554443
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=3.5e-17 Score=136.84 Aligned_cols=107 Identities=33% Similarity=0.555 Sum_probs=93.7
Q ss_pred CCCCeEEEEccCccHHHHHHHh-cC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSK-QG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~-~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~ 238 (343)
.++.+|||+|||+|.++..+++ .+ ..+++|+|+|+.|++.|+++++..+.++++|+++|+.+++ +.+.||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 32 3489999999999999999999999889999999999965 337999999999
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
+++++ .+...+++++.++|++||++++..+.
T Consensus 82 ~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99877 46667899999999999999998877
No 9
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=144.73 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=115.9
Q ss_pred CcHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchhhhhccCCCCeEEEEc
Q 019324 93 GLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIG 172 (343)
Q Consensus 93 ~~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiG 172 (343)
.++.|||.+|..+.++|+++++ |+...+.++.... . ....+|||||
T Consensus 34 ~~~k~wD~fy~~~~~rFfkdR~----------------wL~~Efpel~~~~-----------------~-~~~~~ilEvG 79 (264)
T KOG2361|consen 34 EASKYWDTFYKIHENRFFKDRN----------------WLLREFPELLPVD-----------------E-KSAETILEVG 79 (264)
T ss_pred chhhhhhhhhhhccccccchhH----------------HHHHhhHHhhCcc-----------------c-cChhhheeec
Confidence 5789999999999999997766 6655544333200 0 2233899999
Q ss_pred cCccHHHHHHHhcCC---CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEECccccccc
Q 019324 173 TGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 173 cG~G~~~~~la~~g~---~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~~~l~~i~ 244 (343)
||.|+...++.+... -.|+++|+||.+|+..+++..... .++...+.|+.... ..+++|+|++..++.+|.
T Consensus 80 CGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~ 158 (264)
T KOG2361|consen 80 CGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH 158 (264)
T ss_pred cCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEeccC
Confidence 999999999988632 279999999999999999877665 47888888887754 258999999999999983
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
+......+++++++|||||.+++-.+....
T Consensus 159 -----pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 159 -----PEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred -----hHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 355667889999999999999998766543
No 10
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.72 E-value=3.8e-17 Score=150.71 Aligned_cols=133 Identities=22% Similarity=0.292 Sum_probs=108.4
Q ss_pred hhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 019324 135 LCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212 (343)
Q Consensus 135 ~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~ 212 (343)
....+.+++.++++.| ++.+++..+... .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++|...+++
T Consensus 128 ~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~ 207 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV 207 (288)
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 4467889999999988 778888887754 57899999999999999999988877999999999999999999998887
Q ss_pred C-ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 213 S-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 213 ~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
. ++.+...+.... ..++||+|+++...+. ...++.++.++|||||+++++.....
T Consensus 208 ~~~~~~~~~~~~~~-~~~~fDlVvan~~~~~----------l~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 208 SDRLQVKLIYLEQP-IEGKADVIVANILAEV----------IKELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred CcceEEEecccccc-cCCCceEEEEecCHHH----------HHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 4 466676664332 3578999999865432 34678999999999999999876543
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.72 E-value=8.4e-17 Score=140.34 Aligned_cols=105 Identities=19% Similarity=0.293 Sum_probs=91.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++....++.++++.+.|+.+..++++||+|+++.++++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 4568999999999999999999976 899999999999999999988887779999999988766778999999988876
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+. +.....+++++.++|||||.+++.
T Consensus 108 ~~-----~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LE-----AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CC-----HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 52 346678999999999999996653
No 12
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.70 E-value=1.8e-16 Score=139.49 Aligned_cols=106 Identities=22% Similarity=0.200 Sum_probs=85.8
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH------------cCCCceEEEEccCCCCcc--CC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKL--ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~i~~~~~D~~~~~~--~~ 229 (343)
++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+.... ....+++++++|+.++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 467999999999999999999998 899999999999986442211 011368999999998764 36
Q ss_pred CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
.||.|+...++.++. +..+..+++.+.++|||||++++.+.
T Consensus 113 ~fD~i~D~~~~~~l~-----~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 113 PVDAVYDRAALIALP-----EEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CcCEEEechhhccCC-----HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 799999998887763 46677899999999999998776544
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=1.1e-16 Score=121.89 Aligned_cols=94 Identities=29% Similarity=0.501 Sum_probs=81.7
Q ss_pred EEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccccccCC
Q 019324 169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHP 247 (343)
Q Consensus 169 LDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~ 247 (343)
||+|||+|..+..+++.+..+|+|+|+|+.+++.++++.... ++.+.++|+..+++ +++||+|++..+++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec----
Confidence 899999999999999994459999999999999999987653 46699999999985 6899999999999988
Q ss_pred CChhhHHHHHHHHhhccCCCcEEEE
Q 019324 248 DGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 248 ~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
.+...+++++.|+|||||+++|
T Consensus 74 ---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHcCcCeEEeC
Confidence 5778899999999999999986
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=4.4e-16 Score=141.61 Aligned_cols=115 Identities=21% Similarity=0.334 Sum_probs=94.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHH---cCCCceEEEEccCCCCcc-CCCccEEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVDDVLDTKL-ERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~---~~~~~i~~~~~D~~~~~~-~~~fD~V~~ 236 (343)
.++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.|+++... ...++++++++|+.++++ +++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45789999999999999999876 32 4899999999999999887532 223579999999998876 578999999
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
+.+++++ .+...+++++.|+|||||++++............
T Consensus 152 ~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~ 192 (261)
T PLN02233 152 GYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTT 192 (261)
T ss_pred ecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHH
Confidence 9988877 3566789999999999999999877665444333
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.69 E-value=1.9e-16 Score=147.33 Aligned_cols=111 Identities=27% Similarity=0.448 Sum_probs=95.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l 240 (343)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++....+. .++.++++|+.+++. +++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4567999999999999999998875 899999999999999988765543 479999999888754 5789999999999
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
+|+ .+...+++++.++|||||.+++.+.+.....
T Consensus 209 eHv-------~d~~~~L~~l~r~LkPGG~liist~nr~~~~ 242 (322)
T PLN02396 209 EHV-------ANPAEFCKSLSALTIPNGATVLSTINRTMRA 242 (322)
T ss_pred Hhc-------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHH
Confidence 998 3556789999999999999999998887543
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.69 E-value=2.9e-16 Score=136.77 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=88.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....++ ++.+.+.|+...+++++||+|+++.++++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence 3467999999999999999999876 899999999999999999888776 58888888876666678999999988876
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+. ......+++++.++|||||++++.
T Consensus 107 ~~-----~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQ-----AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CC-----HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 62 245667899999999999996664
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=3.3e-16 Score=142.13 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=95.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++....++ ++++++++|+.+.. .+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3467999999999999999999975 899999999999999999988776 47999999997764 3678999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~ 280 (343)
++++ .+...+++++.++|||||++++..++....
T Consensus 122 l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~ 155 (255)
T PRK11036 122 LEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNANGL 155 (255)
T ss_pred HHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECccHH
Confidence 9888 344578899999999999999988777543
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=1.4e-15 Score=140.31 Aligned_cols=104 Identities=20% Similarity=0.351 Sum_probs=91.2
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 243 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i 243 (343)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...++ ++++.+.|+.....+++||+|++..+++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhhC
Confidence 456999999999999999999986 899999999999999999988887 899999999877667899999999988776
Q ss_pred ccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
. ......+++++.++|+|||++++..
T Consensus 198 ~-----~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 N-----RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred C-----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 3466688999999999999977643
No 19
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.67 E-value=3.9e-16 Score=133.85 Aligned_cols=106 Identities=27% Similarity=0.392 Sum_probs=88.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.++.++||+|||.|+.+..|+++|+ .|+++|+|+.+++.+++.+...++ .++..+.|+.+..+++.||+|++..++.+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEEEEEEEecc
Confidence 4578999999999999999999998 899999999999999999888887 59999999999888889999999888877
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+. +.....+++++.+.++|||++++.+.
T Consensus 107 L~-----~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQ-----RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CC-----HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 73 35566788999999999999888543
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=1.3e-15 Score=132.70 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=118.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC------CcEEEEeCChHHHHHHHHHHHHcCCC---ceEEEEccCCCCcc-CCCc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKL-ERQF 231 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~------~~v~gvD~s~~~i~~a~~~~~~~~~~---~i~~~~~D~~~~~~-~~~f 231 (343)
.++.++||++||||.+++.+.++ +. .+|+.+|+||.|+..++++....++. ++.|+++|+.++++ +.+|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 45689999999999999999886 22 58999999999999999999776662 48999999999987 6899
Q ss_pred cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH-hhhhccccccccchhhhhcccCC
Q 019324 232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS-NLSQRRIGVSQEHEIKDEEACRE 310 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
|..+..+.+..+ .++.+.+++++|+|||||++++..++....+.++.+. .|.... .|.+........
T Consensus 179 D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V-----lpvlG~~iagd~ 246 (296)
T KOG1540|consen 179 DAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV-----LPVLGEIIAGDR 246 (296)
T ss_pred eeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh-----hchhhHhhhhhH
Confidence 999988877766 4667889999999999999999998887766665554 333322 444545555555
Q ss_pred CCeeEecc-cccCCc
Q 019324 311 PPFRYLNH-VRTYPT 324 (343)
Q Consensus 311 ~~f~~~~~-~~~~p~ 324 (343)
..|+|+.. ++.||.
T Consensus 247 ~sYqYLveSI~rfp~ 261 (296)
T KOG1540|consen 247 KSYQYLVESIRRFPP 261 (296)
T ss_pred hhhhhHHhhhhcCCC
Confidence 66666654 777775
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.66 E-value=9.2e-16 Score=144.72 Aligned_cols=107 Identities=22% Similarity=0.379 Sum_probs=92.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l 240 (343)
.++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....++ ++++|+++|+.+.++ +++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 45789999999999999999987223899999999999999999888776 479999999998765 6899999999998
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
+|+ .+...+++++.++|||||++++.++.
T Consensus 197 ~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 197 EHM-------PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 887 35567899999999999999997653
No 22
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.66 E-value=4.9e-16 Score=140.53 Aligned_cols=160 Identities=19% Similarity=0.341 Sum_probs=113.9
Q ss_pred HhHHHHHHHHHHhhhhcCCcce-EEeCCchhHHHHHHHhhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEc
Q 019324 96 SYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIG 172 (343)
Q Consensus 96 ~~Wd~~y~~~~~~f~~~~~~~~-~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiG 172 (343)
+-|...|++....+. .++ .|..+...+. .. .......+.+++.++++.| ++..++..+... .++.+|||+|
T Consensus 54 ~dw~~~w~~~~~p~~----~g~~~~i~p~~~~~-~~-~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiG 127 (250)
T PRK00517 54 EDWEREWKKYFHPIR----IGDRLWIVPSWEDP-PD-PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVG 127 (250)
T ss_pred hhHHHHHHHHCCCEE----EcCCEEEECCCcCC-CC-CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeC
Confidence 348888887665554 332 1211111110 01 2234467778888888888 677777776653 6889999999
Q ss_pred cCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccccccccCCCChh
Q 019324 173 TGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 251 (343)
Q Consensus 173 cG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~ 251 (343)
||+|.++..+++.|..+|+|+|+|+.+++.|++|+..+++ .++.+..+| .+||+|+++...+
T Consensus 128 cGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~---------- 190 (250)
T PRK00517 128 CGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILAN---------- 190 (250)
T ss_pred CcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHH----------
Confidence 9999999998888776799999999999999999998876 334443332 2799999975432
Q ss_pred hHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 252 KRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 252 ~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
....++.++.++|||||+++++.....
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 234678999999999999999866543
No 23
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.65 E-value=1.9e-15 Score=133.55 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=84.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH------------cCCCceEEEEccCCCCcc--C
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKL--E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~i~~~~~D~~~~~~--~ 228 (343)
.++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+.... ....++++.++|+.++.. .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3467999999999999999999998 899999999999987432111 011368999999998754 2
Q ss_pred CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
..||+|+...++.++. +..+..+++.+.++|+|||++++
T Consensus 115 ~~fd~v~D~~~~~~l~-----~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALP-----EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCC-----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 5899999998887773 46778899999999999997555
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.65 E-value=1.5e-15 Score=129.29 Aligned_cols=113 Identities=27% Similarity=0.462 Sum_probs=91.9
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
+..+|||+|||+|.++..+++.+.. +|+++|+++.+++.+++++..+++.+++++..|+.+...+++||+|++|.+++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 6789999999999999999998654 699999999999999999999998669999999988766789999999988643
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
-. .++......+++.+.+.|||||.+++......
T Consensus 111 ~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 111 GG--DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp TS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cc--ccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 31 11223567889999999999999987655443
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.65 E-value=2.7e-15 Score=128.91 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=93.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..++..+ ..+|+|+|.|+.|++.++++.+..++++++++++|+.+....++||+|+++. +.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hh
Confidence 347899999999999999988663 3489999999999999999998888878999999998875567999999975 32
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 288 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~ 288 (343)
....+++.+.++|+|||.+++........++....+.
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK 156 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh
Confidence 2235678889999999999998776666666555443
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.64 E-value=4e-15 Score=128.19 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=92.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.++++.+..++++++++++|+.+....++||+|+++..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 34789999999999999998864 335899999999999999999999998789999999988766678999999742
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
.....+++.++++|||||++++..+.....++..
T Consensus 122 ---------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~ 155 (187)
T PRK00107 122 ---------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAE 155 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHH
Confidence 2345678999999999999999877765555443
No 27
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.64 E-value=2.2e-16 Score=138.39 Aligned_cols=110 Identities=27% Similarity=0.429 Sum_probs=92.7
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC------ceEEEEccCCCCccCCCccEEEECc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~------~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
+.+|||+|||+|.++..|++.|+ +|+|+|.++.||+.|++........ ++++.+.|+... .+.||.|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceeeeHH
Confidence 57899999999999999999986 9999999999999999985554431 256666676664 34699999999
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
+++|+ .++..+++.+.++|||||.+++++.+.+......
T Consensus 167 vleHV-------~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~ 205 (282)
T KOG1270|consen 167 VLEHV-------KDPQEFLNCLSALLKPNGRLFITTINRTILSFAG 205 (282)
T ss_pred HHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhc
Confidence 99999 6788899999999999999999999887655443
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.64 E-value=5.9e-15 Score=131.83 Aligned_cols=109 Identities=17% Similarity=0.322 Sum_probs=92.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.++++....+.++++++++|+...++ +++||+|++..+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 45789999999999999999876 32 4899999999999999999887777789999999988764 578999999888
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
++++ .+...+++++.++|+|||.+++......
T Consensus 124 l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 124 LRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 7766 3455788999999999999998765443
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=1.8e-15 Score=137.27 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++ +++++++|+.++...++||+|+++.+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence 467899999999999999999872 23899999999999999762 6789999998775567999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
++ .+...++++++++|||||.+++..+.
T Consensus 101 ~~-------~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WV-------PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hC-------CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 88 34567889999999999999987554
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=3.6e-15 Score=134.64 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=89.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|++++...+.. +++++++|+.+.+.. .+|+|+++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 46789999999999999888762 2348999999999999999999877653 799999999887654 599999998
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+++++. +.+...++++++++|||||.+++...
T Consensus 134 ~l~~l~-----~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLE-----PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCC-----HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888772 24456789999999999999999753
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=2.6e-15 Score=140.39 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=88.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..++..|...|+|+|+|+.++..++......+ ..++.++.+|+.+.+.++.||+|+|.++++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4578999999999999999999987679999999999976654433322 147999999999887778999999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|+ .+...++++++++|+|||.+++.+
T Consensus 201 H~-------~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HR-------RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cc-------CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 87 355678999999999999999864
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.61 E-value=5.6e-15 Score=136.90 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=86.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++++|||||||+|.++..++..|...|+|+|+|+.|+..++......+ ..++.+...++.+.+...+||+|++++++.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 5578999999999999999998887689999999999987544322211 147888889988876666899999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
|+ .+...++++++++|||||.|++.+.
T Consensus 200 H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 200 HR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred cc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 87 3556788999999999999998654
No 33
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=1.7e-14 Score=127.18 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=89.1
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH-------------HcCCCceEEEEccCCCCcc---
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------------RDGFSCIKFLVDDVLDTKL--- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~-------------~~~~~~i~~~~~D~~~~~~--- 227 (343)
++.+||..|||.|..+.+|+++|+ .|+|+|+|+.+|+.+.+... ..+ .++++.++|+.+++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCCCcccc
Confidence 467999999999999999999998 79999999999999866321 112 379999999999853
Q ss_pred -CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 228 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 228 -~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
.+.||+|+....+.++. +..+.++.+.+.++|+|||.+++.+..
T Consensus 121 ~~~~fD~VyDra~~~Alp-----p~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-----NDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccCCcCeeeeehhHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 25899999999998883 467788999999999999999886553
No 34
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=3.7e-15 Score=126.53 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=84.3
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~ 244 (343)
-.++||+|||+|.++..|+.+ +.+++++|+|+.+++.|++++... ++|+|.+.|+.+..+++.||+|++..++.++
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL- 119 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSEVLYYL- 119 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGGS-
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEehHhHcC-
Confidence 458999999999999999999 459999999999999999998754 6999999999998888999999999999888
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
....+...++..+...|+|||.+++.+..
T Consensus 120 ---~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 120 ---DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp ---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ---CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 23356778899999999999999997763
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.60 E-value=2.7e-15 Score=116.54 Aligned_cols=95 Identities=31% Similarity=0.578 Sum_probs=79.2
Q ss_pred EEEEccCccHHHHHHHhc---CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc-ccc
Q 019324 168 VLDIGTGNGLLLQELSKQ---GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG-TLD 241 (343)
Q Consensus 168 VLDiGcG~G~~~~~la~~---g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~-~l~ 241 (343)
|||+|||+|..+..+++. +. .+++|+|+|+.|++.++++....+. ++++++.|+.+++. .++||+|++.+ +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999999986 22 5899999999999999999988775 89999999999764 67999999954 487
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCc
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGG 268 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG 268 (343)
++. +.+...+++++.++|+|||
T Consensus 80 ~~~-----~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLS-----PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSS-----HHHHHHHHHHHHHTEEEEE
T ss_pred CCC-----HHHHHHHHHHHHHHhCCCC
Confidence 763 5678899999999999998
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=9.1e-15 Score=132.88 Aligned_cols=102 Identities=22% Similarity=0.351 Sum_probs=87.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++. +++.++.+|+..+..+++||+|+++.+++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChh
Confidence 45789999999999999999886 3348999999999999999874 47899999998776667999999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
++ .+...+++++.++|||||.+++..+.
T Consensus 105 ~~-------~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 105 WL-------PDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 87 34567899999999999999997544
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=126.76 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=97.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
....+|.|+|||+|+.+..|+++ +...++|+|-|+.|++.|+++. ++++|..+|+..+.+..+.|++++|.+++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccchhhhhhhhh
Confidence 56789999999999999999998 5559999999999999998865 69999999999999989999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
++. +...++..+...|.|||.|-+.-+....+.....|+
T Consensus 104 Wlp-------dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr 142 (257)
T COG4106 104 WLP-------DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMR 142 (257)
T ss_pred hcc-------ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHH
Confidence 993 445678999999999999999877765554444443
No 38
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.59 E-value=4.8e-14 Score=121.07 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=96.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++..++. +++++.+|+.+.. .++||+|+++.++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCCC
Confidence 4567899999999999999999876 899999999999999999988876 7899999987753 458999999987754
Q ss_pred cccCC--------------CChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 243 IGLHP--------------DGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 243 i~~~~--------------~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
..-.. .+......+++++.++|||||.+++..+... ..+....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~ 154 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLD 154 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHH
Confidence 42100 0112246789999999999999998766555 556666665
No 39
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.58 E-value=4.1e-14 Score=133.99 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=93.6
Q ss_pred cccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC---CceEEEEccCCCCcc
Q 019324 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKL 227 (343)
Q Consensus 152 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~~ 227 (343)
++++++.+.. ....+|||+|||+|.++..+++.+ ..+|+++|.|+.|++.+++|++.++. .+++++..|+.....
T Consensus 217 trllL~~lp~-~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 217 ARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHHhCCc-ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 3344443332 224699999999999999999873 34899999999999999999987764 368999999876544
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+.+||+|+||.+++.. +.........+++.+.++|+|||.++++.
T Consensus 296 ~~~fDlIlsNPPfh~~--~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQ--HALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccC--ccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5689999999988654 22233445688999999999999999985
No 40
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.58 E-value=2.8e-14 Score=128.19 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=90.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|++++...+. .+++++++|+.+.+++ .+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 35679999999999999999875 234899999999999999999876553 3799999999987654 589999988
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
+++++. +.+...++++++++|||||.+++.....
T Consensus 131 ~l~~~~-----~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCC-----HHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 887762 3456789999999999999999986543
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.58 E-value=1.1e-14 Score=132.65 Aligned_cols=110 Identities=24% Similarity=0.405 Sum_probs=87.3
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~ 239 (343)
+.++.+|||||||.|.++..++++ |+ +|+|+.+|+...+.+++++...|++ ++++...|..+.+ .+||.|++.+.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~ 136 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEM 136 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEec
Confidence 478999999999999999999999 76 8999999999999999999999884 6999999988754 49999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
++|+. ......+++++.++|||||++++.......
T Consensus 137 ~Ehvg-----~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 137 FEHVG-----RKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp GGGTC-----GGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred hhhcC-----hhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99983 356678999999999999999986555443
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.58 E-value=1.7e-14 Score=130.57 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=86.8
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA 242 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~ 242 (343)
+..+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++.. .+.++++|+...++ +++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 467899999999999999988864 89999999999999998642 45688999988765 568999999998877
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
+ .+...++.++.++|||||.++++++...
T Consensus 116 ~-------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 116 C-------GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred c-------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 6 3556788999999999999999876643
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.58 E-value=1.5e-14 Score=128.59 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=89.4
Q ss_pred CeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccccc
Q 019324 166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 243 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i 243 (343)
++|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ .+++++..|+...+.+++||+|++..+++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999998873 34899999999999999999988776 4789999999776556789999999999887
Q ss_pred ccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
.+...+++++.++|||||++++..+.
T Consensus 81 -------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 -------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 34567899999999999999997653
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.57 E-value=2.4e-14 Score=131.21 Aligned_cols=107 Identities=17% Similarity=0.391 Sum_probs=90.7
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
+.++.+|||+|||+|..+..++.. +. .+|+|+|+++.+++.|+++....+.+++++.++|+.+.++ +++||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 367889999999999988877665 43 3799999999999999999988887789999999988765 56899999998
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++++. .+...+++++.++|||||++++...
T Consensus 155 v~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 VINLS-------PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cccCC-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88765 2445688999999999999999654
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.57 E-value=1.9e-14 Score=130.98 Aligned_cols=108 Identities=23% Similarity=0.389 Sum_probs=89.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|..+..++.....+|+|+|+|+.+++.++++.... .++.+.++|+...++ +++||+|++..++.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 677899999999999999988752238999999999999999986542 479999999987665 57899999987776
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
|+. ..+...+++++.++|||||.++++.+..
T Consensus 129 h~~-----~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 129 HLS-----YADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred hCC-----HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 652 2366789999999999999999976543
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.57 E-value=3.1e-16 Score=121.29 Aligned_cols=95 Identities=32% Similarity=0.417 Sum_probs=64.3
Q ss_pred EEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC---CccCCCccEEEECccccccc
Q 019324 169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TKLERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 169 LDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~---~~~~~~fD~V~~~~~l~~i~ 244 (343)
||||||+|.++..+++. +..+++|+|+|+.|++.+++++...+..+......+..+ ....++||+|++..+++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999888 334999999999999999998887764444444444333 2234699999999999998
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEE
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLL 270 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~l 270 (343)
.+...+++++.++|||||+|
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 56668999999999999986
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.56 E-value=2.7e-14 Score=124.97 Aligned_cols=125 Identities=16% Similarity=0.199 Sum_probs=93.8
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC-CCCc--c-CCCccEEEECc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK--L-ERQFQLVMDKG 238 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~-~~~~--~-~~~fD~V~~~~ 238 (343)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...+.+++.++++|+ ...+ . +++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999999876 3348999999999999999999888877899999999 5443 3 57899999865
Q ss_pred ccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh-HHHHHHHHh
Q 019324 239 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVSN 288 (343)
Q Consensus 239 ~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~~~~~~ 288 (343)
...+... +.........+++++.++|||||++++.+.+... ..+.+.++.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA 171 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4322110 1111112356889999999999999998765543 345555543
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=5.2e-14 Score=121.71 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=90.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++++...++.+++++.+|+.. ...++||+|++.+...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCCcc
Confidence 567899999999999999998873 24899999999999999999988887789999998753 3456899999876543
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec-CCChHHHHHHHHh
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN 288 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~-~~~~~~~~~~~~~ 288 (343)
. ...+++.+.++|+|||++++... ..+..+..+.+.+
T Consensus 109 ~----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~ 146 (187)
T PRK08287 109 N----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK 146 (187)
T ss_pred C----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH
Confidence 2 23567899999999999988653 3334455555543
No 49
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=1.4e-14 Score=121.58 Aligned_cols=98 Identities=34% Similarity=0.533 Sum_probs=82.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..+++.|+ +++|+|+++.+++. .++.....+..... .+++||+|+++.+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 6688999999999999999999887 99999999999998 13344444333332 468999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
|+ .+...+++++.++|||||++++.+++..
T Consensus 90 ~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 90 HL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99 4677899999999999999999988764
No 50
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=3.1e-14 Score=128.26 Aligned_cols=111 Identities=23% Similarity=0.401 Sum_probs=97.8
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECc
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
++.++.+|||||||-|.+++.++++ |. +|+|+++|+++.+.+++++...|++ +++++..|..+.. +.||-|++.+
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehh
Confidence 4488999999999999999999998 44 9999999999999999999999996 8999999988864 4599999999
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
.++|+. ......+++.+.++|+|||.+++.+.....
T Consensus 146 mfEhvg-----~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHVG-----KENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHhC-----cccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999995 245668999999999999999997665544
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=2.7e-14 Score=140.92 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=90.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++....+ .++.|.++|+...++ +++||+|++..++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 5678999999999999999988632389999999999999998876443 379999999988765 56899999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
|+ .+...++++++++|||||.+++..+..
T Consensus 344 h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 344 HI-------QDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cc-------CCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 88 355678999999999999999976543
No 52
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=1.7e-14 Score=128.33 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA 242 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~ 242 (343)
++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|+++ ..++++|+...++ +++||+|++..++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence 4679999999999999999987323899999999999999863 2357889888875 689999999998877
Q ss_pred cccCCCChhhHHHHHHHHhhccCCC
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPG 267 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~Lkpg 267 (343)
+ .+....++++.|+|||.
T Consensus 123 ~-------~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 123 S-------DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred c-------CCHHHHHHHHHHHhcCc
Confidence 6 45667899999999994
No 53
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=3.7e-14 Score=125.59 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=111.3
Q ss_pred ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-
Q 019324 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL- 227 (343)
Q Consensus 151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~- 227 (343)
+...++..........+|||+|||+|.+++.++++ ...+++|||+++.+.+.|+++.+.+++ +++++++.|+..+..
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 34444444445556889999999999999999998 546999999999999999999999887 489999999998753
Q ss_pred --CCCccEEEECccccccccC--CC---------ChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324 228 --ERQFQLVMDKGTLDAIGLH--PD---------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL 289 (343)
Q Consensus 228 --~~~fD~V~~~~~l~~i~~~--~~---------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~ 289 (343)
..+||+|+||..+...... ++ .....+.+++.+.++|||||.+.++.+.....++...+..|
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~ 185 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSY 185 (248)
T ss_pred ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhc
Confidence 3579999999887554322 11 12334678899999999999999999988888888888754
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.55 E-value=1.1e-13 Score=110.95 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=85.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...+.++++++..|+.... ...+||+|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 44679999999999999999987 33589999999999999999998888778999999876522 2468999998654
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
.. ....+++.+.++|||||.+++...
T Consensus 98 ~~----------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG----------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 32 234788999999999999998753
No 55
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.54 E-value=1.6e-14 Score=114.92 Aligned_cols=112 Identities=25% Similarity=0.408 Sum_probs=88.8
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc---cCCCccEEEECccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK---LERQFQLVMDKGTL 240 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~---~~~~fD~V~~~~~l 240 (343)
+.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++...+. .+++++++|+.+.. ..++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999999999999745999999999999999999999887 57999999998865 36899999999887
Q ss_pred cccc-cCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 241 DAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 241 ~~i~-~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
.... ...........+++.+.++|||||.+++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5321 11111224467899999999999999998764
No 56
>PRK14967 putative methyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=122.70 Aligned_cols=124 Identities=25% Similarity=0.275 Sum_probs=94.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++..++. ++.++.+|+.+...+++||+|+++..+..
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCCC
Confidence 45689999999999999999988756899999999999999999988876 68899999877544578999999865422
Q ss_pred cc--------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324 243 IG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS 287 (343)
Q Consensus 243 i~--------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~ 287 (343)
-. ...+.......+++++.++|||||++++..... ...+..+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~ 173 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS 173 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence 10 011112234568899999999999999865544 4455555554
No 57
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.54 E-value=5e-14 Score=124.26 Aligned_cols=138 Identities=25% Similarity=0.363 Sum_probs=99.9
Q ss_pred cHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchhhhhccCCCCeEEEEcc
Q 019324 94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT 173 (343)
Q Consensus 94 ~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc 173 (343)
..++|+++|.++...|..... ...+..|...+ ...++.+||..||
T Consensus 2 ~~~~W~~~w~~~~~~w~~~~~----------~p~L~~~~~~l-------------------------~~~~~~rvLvPgC 46 (218)
T PF05724_consen 2 DPEFWEERWQEGQTPWDQGEP----------NPALVEYLDSL-------------------------ALKPGGRVLVPGC 46 (218)
T ss_dssp HHHHHHHHHHTT--TT--TTS----------THHHHHHHHHH-------------------------TTSTSEEEEETTT
T ss_pred CHHHHHHHHhcCCCCCCCCCC----------CHHHHHHHHhc-------------------------CCCCCCeEEEeCC
Confidence 468999999887766553221 22333333332 1255679999999
Q ss_pred CccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH------------cCCCceEEEEccCCCCccC--CCccEEEECcc
Q 019324 174 GNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKLE--RQFQLVMDKGT 239 (343)
Q Consensus 174 G~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~i~~~~~D~~~~~~~--~~fD~V~~~~~ 239 (343)
|.|.....|+++|+ +|+|+|+|+.+|+.+.+.... ....+|++.++|+.++... ++||+|+....
T Consensus 47 G~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~ 125 (218)
T PF05724_consen 47 GKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTF 125 (218)
T ss_dssp TTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSS
T ss_pred CChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecc
Confidence 99999999999998 899999999999998543221 0113689999999997653 57999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
+.++. +..+..+.+.+.++|+|||.+++
T Consensus 126 l~Alp-----p~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 126 LCALP-----PEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TTTS------GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred cccCC-----HHHHHHHHHHHHHHhCCCCcEEE
Confidence 98873 46788899999999999999444
No 58
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.53 E-value=1.5e-13 Score=130.37 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=105.1
Q ss_pred ccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324 147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (343)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~ 225 (343)
+.+.++.++..++....++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++|+..++. +++++++|+.+.
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~ 312 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDT 312 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcc
Confidence 345555555555555556779999999999999998875 344899999999999999999988875 899999998764
Q ss_pred c--cCCCccEEEECccccc------------------cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324 226 K--LERQFQLVMDKGTLDA------------------IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285 (343)
Q Consensus 226 ~--~~~~fD~V~~~~~l~~------------------i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~ 285 (343)
. ..++||+|++|.+.-. +.-..++......+++.+.+.|+|||.+++.......+.+.+.
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~l 392 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGV 392 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHH
Confidence 3 2457999999875411 0001223334457788889999999999988777667767666
Q ss_pred HH
Q 019324 286 VS 287 (343)
Q Consensus 286 ~~ 287 (343)
+.
T Consensus 393 l~ 394 (423)
T PRK14966 393 LA 394 (423)
T ss_pred HH
Confidence 65
No 59
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.52 E-value=1.2e-13 Score=120.91 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=81.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++. +++.+.++|+.+...+++||+|+++++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCCCCCCCEEEEEECChhh
Confidence 45779999999999999999886 4458999999999999999864 36778899988833468999999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|+. +.....+++++.+++ ++.+++..
T Consensus 117 hl~-----p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HIN-----PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCC-----HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 872 356678889999997 45666654
No 60
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=2.5e-13 Score=124.89 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=99.4
Q ss_pred cccccccchhhhhc---cCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccC
Q 019324 148 VEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV 222 (343)
Q Consensus 148 ~~~~~~~~~~~l~~---~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~ 222 (343)
.+.++.++...+.. ..++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|+..+++. +++++++|+
T Consensus 102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~ 181 (284)
T TIGR03533 102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL 181 (284)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 34444444444432 1345799999999999999999873 248999999999999999999988874 799999998
Q ss_pred CCCccCCCccEEEECccccc------cc---c---------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 223 LDTKLERQFQLVMDKGTLDA------IG---L---------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 223 ~~~~~~~~fD~V~~~~~l~~------i~---~---------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
.+...+++||+|+++...-. +. . ..++......+++.+.++|+|||++++...... ..+.+
T Consensus 182 ~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~ 260 (284)
T TIGR03533 182 FAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEE 260 (284)
T ss_pred hhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHH
Confidence 76433458999999864311 00 0 012223346788999999999999999776533 44444
Q ss_pred HHH
Q 019324 285 EVS 287 (343)
Q Consensus 285 ~~~ 287 (343)
.+.
T Consensus 261 ~~~ 263 (284)
T TIGR03533 261 AYP 263 (284)
T ss_pred HHH
Confidence 444
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.51 E-value=2.7e-13 Score=124.89 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=102.9
Q ss_pred cccccccchhhhhcc--C-CCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccC
Q 019324 148 VEDLKSEPVEENDKY--L-SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV 222 (343)
Q Consensus 148 ~~~~~~~~~~~l~~~--~-~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~ 222 (343)
.+.++.++..++... . +..+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++|+..+++. +++++++|+
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 344555555544432 2 226899999999999999998732 48999999999999999999988875 499999998
Q ss_pred CCCccCCCccEEEECcccccc------------------ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 223 LDTKLERQFQLVMDKGTLDAI------------------GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 223 ~~~~~~~~fD~V~~~~~l~~i------------------~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
.+.....+||+|++|...-.. .-..++......++..+.++|+|||++++...+.....+.+
T Consensus 175 ~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~ 254 (284)
T TIGR00536 175 FEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKE 254 (284)
T ss_pred hccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHH
Confidence 875334489999998533110 00112234566788999999999999999888777666655
Q ss_pred HHH
Q 019324 285 EVS 287 (343)
Q Consensus 285 ~~~ 287 (343)
.+.
T Consensus 255 ~~~ 257 (284)
T TIGR00536 255 LLR 257 (284)
T ss_pred HHH
Confidence 443
No 62
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=1.9e-13 Score=115.65 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=89.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceE-EEEccCCCCc--cCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK--LERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~-~~~~D~~~~~--~~~~fD~V~~~~~ 239 (343)
.....|||+|||||..-...-..+.+.|+++|.++.|-+++.+.+......++. |++++..+++ .++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 334568999999999887776554459999999999999999998877555666 9999999987 4899999999888
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
+-.+ .+..+.|+++.|+|+|||++++..-..
T Consensus 155 LCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 155 LCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 7655 577788999999999999999964433
No 63
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=2.1e-13 Score=121.92 Aligned_cols=104 Identities=24% Similarity=0.374 Sum_probs=88.6
Q ss_pred CCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.+.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. +++.++.+|+.+.+. +++||+|+++.+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 357899999999999999998853 379999999999999998764 378899999988764 67899999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
++ .+...+++++.++|+|||.+++..+...
T Consensus 110 ~~-------~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 110 WC-------DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hc-------cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 77 3456789999999999999999876554
No 64
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=2e-13 Score=120.77 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||||||+|.++..+++... .+|+++|+++.+++.|++++...++.+++++++|+..... ..+||+|++...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 6788999999999999999988732 2599999999999999999999988889999999977533 468999998766
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
...+ .+.+.+.|+|||++++...
T Consensus 156 ~~~~-------------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 156 GPKI-------------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cccc-------------cHHHHHhcCcCcEEEEEEc
Confidence 5443 2567889999999998643
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=2.8e-13 Score=118.89 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=83.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
.++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.. +++++.+|+.+... ..+||+|++..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 56789999999999999888875 2 248999999999999999999888864 59999999987533 46899999988
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++.++. +++.++|+|||++++...
T Consensus 151 ~~~~~~-------------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 151 AASTIP-------------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred Ccchhh-------------HHHHHhcCcCcEEEEEEc
Confidence 776552 578899999999988643
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.49 E-value=6.4e-13 Score=115.62 Aligned_cols=124 Identities=17% Similarity=0.253 Sum_probs=92.4
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---c-CCCccEEEECc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L-ERQFQLVMDKG 238 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~-~~~fD~V~~~~ 238 (343)
...+|||||||+|.++..++.. +...++|+|+++.+++.|+++....++.+++++++|+.+.. . ++++|.|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 33489999999999999999998888889999999997643 2 45899999875
Q ss_pred ccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 239 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 239 ~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
...+..- |.........+++++.++|||||.+++.+.+.. ..++.+.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4322100 000011124688999999999999999876664 344444444
No 67
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.49 E-value=5.1e-13 Score=120.67 Aligned_cols=124 Identities=25% Similarity=0.345 Sum_probs=95.0
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.+.+|||+|||+|.++..++.. +...++|+|+++.+++.+++++...++++++++++|+.+....++||+|+++.++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 3569999999999999999987 334899999999999999999998888789999999987544678999999876432
Q ss_pred cc----c---------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 243 IG----L---------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 243 i~----~---------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
.. + ..++......+++++.++|+|||.+++........++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 11 0 001112234678999999999999999766555555555554
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.49 E-value=3.5e-13 Score=126.73 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred cccchhhhhccCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC
Q 019324 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ 230 (343)
Q Consensus 152 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~ 230 (343)
++.+++.+.. ....+|||+|||+|.++..+++... .+|+++|+|+.|++.++++++.+++ ..+++..|+... ..++
T Consensus 185 t~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~ 261 (342)
T PRK09489 185 SQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGR 261 (342)
T ss_pred HHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCC
Confidence 3445554443 2345899999999999999998743 4899999999999999999999886 567888888664 4678
Q ss_pred ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
||+|+++.+++... .........+++++.++|||||.++++.....
T Consensus 262 fDlIvsNPPFH~g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 262 FDMIISNPPFHDGI--QTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred ccEEEECCCccCCc--cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 99999999886531 12234567889999999999999998765443
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.49 E-value=1.8e-13 Score=123.56 Aligned_cols=106 Identities=24% Similarity=0.211 Sum_probs=83.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
..+++|||||||+|..+..++..|++.|+|+|.++...-..+-.....|... +.++..-+.+++..+.||+|+|.+++.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 6789999999999999999999998899999999888777554444444322 333323455554467899999999999
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
|. .+....|.++...|+|||.+++.+.
T Consensus 194 Hr-------r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 194 HR-------RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred cc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 87 5667788999999999999998643
No 70
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=119.63 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=83.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||||||+|.++..+++. +. .+|+++|+++.+++.+++++...+..+++++++|...... .++||+|++...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC
Confidence 67889999999999999988876 32 3899999999999999999998888889999999876543 578999998766
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
...+ .+.+.+.|||||++++..
T Consensus 155 ~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccc-------------hHHHHHhhCCCcEEEEEE
Confidence 5433 246777899999999864
No 71
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.49 E-value=2.4e-13 Score=127.03 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=86.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l 240 (343)
.++.+|||||||+|.++..+++. +..+|+++|+|+.|++.++++... .+++++.+|+.+.++ +++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 35679999999999999988875 335899999999999999987642 378899999988765 5789999999988
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
+++ .+....++++.++|||||.+++....
T Consensus 189 ~~~-------~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 189 EYW-------PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred hhC-------CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 876 24456889999999999999886543
No 72
>PRK08317 hypothetical protein; Provisional
Probab=99.48 E-value=8.2e-13 Score=118.00 Aligned_cols=106 Identities=24% Similarity=0.362 Sum_probs=88.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++....+ .++.+...|+...+. ++.||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEecccccCCCCCCCceEEEEech
Confidence 567899999999999999998862 3489999999999999998843333 479999999887654 578999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
++++ .+...+++++.++|||||.+++..+.
T Consensus 97 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 97 LQHL-------EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhcc-------CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8887 35567889999999999999987654
No 73
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1e-12 Score=118.87 Aligned_cols=121 Identities=21% Similarity=0.221 Sum_probs=95.3
Q ss_pred ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC
Q 019324 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER 229 (343)
Q Consensus 151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~ 229 (343)
-.+++++-+.... ..+|||+|||.|.++..+++.. ..+++.+|.|..+++.+++|+..+++++..++..|+.+...+
T Consensus 146 GS~lLl~~l~~~~-~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~- 223 (300)
T COG2813 146 GSRLLLETLPPDL-GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG- 223 (300)
T ss_pred HHHHHHHhCCccC-CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-
Confidence 4555555555433 3499999999999999999984 459999999999999999999999987766777777765444
Q ss_pred CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+||+|+||..++.= +.....-...++....+.|++||.|.++..
T Consensus 224 kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 224 KFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999999998643 112222334789999999999999998755
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=99.48 E-value=1.3e-12 Score=112.60 Aligned_cols=124 Identities=21% Similarity=0.346 Sum_probs=94.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCccCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
.++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.+++++..++..+ +.++++|+.+...+..||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 456799999999999999999985 489999999999999999998877644 89999998775455689999998765
Q ss_pred ccc--------------ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 241 DAI--------------GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 241 ~~i--------------~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
... ............+++++.++|||||.+++..+... ...+.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~ 162 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE 162 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH
Confidence 321 00112233456789999999999999988765443 344444444
No 75
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=8.3e-13 Score=122.66 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=98.6
Q ss_pred ccccccccchhhhhcc--C-CCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEcc
Q 019324 147 HVEDLKSEPVEENDKY--L-SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221 (343)
Q Consensus 147 ~~~~~~~~~~~~l~~~--~-~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D 221 (343)
+.+.+..++...+... . +..+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|+..+++. +++++++|
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 3444555555544322 1 23689999999999999998873 348999999999999999999988874 69999999
Q ss_pred CCCCccCCCccEEEECccccc------c----c--------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324 222 VLDTKLERQFQLVMDKGTLDA------I----G--------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283 (343)
Q Consensus 222 ~~~~~~~~~fD~V~~~~~l~~------i----~--------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~ 283 (343)
+.+...+++||+|+++.+.-. + . -..++......+++.+.++|+|||.+++..... ...+.
T Consensus 193 ~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~ 271 (307)
T PRK11805 193 LFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLE 271 (307)
T ss_pred hhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHH
Confidence 876434568999999854311 0 0 011222344678899999999999999976554 33344
Q ss_pred HHH
Q 019324 284 HEV 286 (343)
Q Consensus 284 ~~~ 286 (343)
..+
T Consensus 272 ~~~ 274 (307)
T PRK11805 272 EAY 274 (307)
T ss_pred HHH
Confidence 333
No 76
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.47 E-value=4.4e-13 Score=118.88 Aligned_cols=103 Identities=26% Similarity=0.343 Sum_probs=85.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++....+. .++.+.++|+...+ ++||+|++..++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHH
Confidence 4578999999999999999998865 899999999999999999877665 37999999998765 7899999988876
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
++. ......+++++.+++++++++.+.
T Consensus 131 ~~~-----~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 131 HYP-----ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hCC-----HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 652 245667889999998877655543
No 77
>PRK06922 hypothetical protein; Provisional
Probab=99.47 E-value=4.1e-13 Score=132.99 Aligned_cols=112 Identities=16% Similarity=0.291 Sum_probs=90.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c-CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~-~~~fD~V~~~~ 238 (343)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++....+. ++.++++|+.+.+ + +++||+|+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEEch
Confidence 46789999999999999888875 334999999999999999998766553 7889999988765 2 57899999998
Q ss_pred cccccccC-C-----CChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 239 TLDAIGLH-P-----DGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 239 ~l~~i~~~-~-----~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+++++.-. + ........++++++++|||||.+++...
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88765211 1 1235677899999999999999999754
No 78
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.7e-13 Score=121.16 Aligned_cols=140 Identities=22% Similarity=0.309 Sum_probs=103.6
Q ss_pred ccccccccchhhhhccCCCC-eEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC
Q 019324 147 HVEDLKSEPVEENDKYLSSW-SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224 (343)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~-~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~ 224 (343)
+.+.+..++..++....... +|||+|||+|.+++.++.... .+|+|+|+|+.+++.|++|+..+++.++.++++|+..
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~ 171 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE 171 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc
Confidence 34445555554432222222 799999999999999999853 3999999999999999999999997677777777766
Q ss_pred CccCCCccEEEECccccc------------------cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 225 TKLERQFQLVMDKGTLDA------------------IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 225 ~~~~~~fD~V~~~~~l~~------------------i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
. ..++||+|++|..+=- +.-..++..-...++.++.+.|+|||.+++.....+...+.+.+
T Consensus 172 ~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 172 P-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred c-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence 4 3459999999975311 11122344556688899999999999999987777777776666
Q ss_pred H
Q 019324 287 S 287 (343)
Q Consensus 287 ~ 287 (343)
.
T Consensus 251 ~ 251 (280)
T COG2890 251 E 251 (280)
T ss_pred H
Confidence 5
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=6e-13 Score=127.23 Aligned_cols=104 Identities=28% Similarity=0.493 Sum_probs=87.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++.. +. ++++...|.... +++||+|++..+++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchh
Confidence 57789999999999999999986 54 89999999999999999874 33 588888888764 57899999999988
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
++. ......+++++.++|||||++++.....
T Consensus 240 hvg-----~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 240 HVG-----PKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hCC-----hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 873 2345678999999999999999976543
No 80
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=3.1e-12 Score=125.06 Aligned_cols=129 Identities=20% Similarity=0.259 Sum_probs=100.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
.++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.+++++...|+.+++++++|+.....+++||+|++....
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 56789999999999999888874 2248999999999999999999999987899999999887656789999975432
Q ss_pred ccc---ccCCC-----Chh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324 241 DAI---GLHPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ 291 (343)
Q Consensus 241 ~~i---~~~~~-----~~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~ 291 (343)
... ..+|+ .+. ....++.++.++|||||++++++|....++....+..|..
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 211 11221 111 1236899999999999999999999987776666655543
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=8.5e-13 Score=130.47 Aligned_cols=124 Identities=16% Similarity=0.256 Sum_probs=94.4
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|+..+++ .+++++++|+.+....++||+|++|..+-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3468999999999999998875 335899999999999999999988886 36999999987643356899999986432
Q ss_pred cc-------------------ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 242 AI-------------------GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 242 ~i-------------------~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
.. .-..++......+++.+.++|+|||.+++.........+.+.+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~ 282 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFL 282 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHH
Confidence 11 00112223445678899999999999999766666666666555
No 82
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.4e-12 Score=126.64 Aligned_cols=131 Identities=21% Similarity=0.320 Sum_probs=104.2
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEE
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMD 236 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~ 236 (343)
...++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.+++++...|+.++++.+.|+.... ..++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3467889999999999999998876 23489999999999999999999999878999999998764 3578999998
Q ss_pred Ccccccccc---CCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324 237 KGTLDAIGL---HPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ 291 (343)
Q Consensus 237 ~~~l~~i~~---~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~ 291 (343)
......... +|+. . .....++.++.+.|||||++++++|....++....+..|..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 765543322 2211 0 12246789999999999999999999988887777776643
No 83
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.45 E-value=3.9e-13 Score=122.37 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=83.3
Q ss_pred CCCeEEEEccCccH----HHHHHHhcC------CCcEEEEeCChHHHHHHHHHHH----HcC------------------
Q 019324 164 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLAN----RDG------------------ 211 (343)
Q Consensus 164 ~~~~VLDiGcG~G~----~~~~la~~g------~~~v~gvD~s~~~i~~a~~~~~----~~~------------------ 211 (343)
++.+|||+|||+|. +++.+++.+ ..+|+|+|+|+.|++.|++..- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 455555542 1379999999999999998531 000
Q ss_pred ----C-CceEEEEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 212 ----F-SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 212 ----~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+ .+|.|.+.|+.+.++ .++||+|+|.+++.++. ......+++++.++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-----~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-----EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-----HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1 268999999998765 68999999999998772 3456689999999999999999854
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=1.3e-12 Score=113.79 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-cCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-~~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++...+..+++++.+|+.+. . ....+|.++..+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~ 118 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG 118 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC
Confidence 56789999999999999999865 2348999999999999999999988877899999998652 1 2234566654211
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
.....+++++.++|+|||.+++..++.
T Consensus 119 -----------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 119 -----------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred -----------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 233567899999999999999987654
No 85
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.44 E-value=4.6e-12 Score=117.65 Aligned_cols=100 Identities=20% Similarity=0.146 Sum_probs=77.2
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCccCCCccEEEECc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....+ ..++.|.+.|+... +++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence 567999999999999999999875 89999999999999999987642 23688999998653 57899999998
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
++.|+. ......+++.+.+ +.+||+++.
T Consensus 221 vL~H~p-----~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 221 VLIHYP-----QDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEEecC-----HHHHHHHHHHHHh-hcCCEEEEE
Confidence 887652 1233345666665 456665443
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.44 E-value=1.9e-12 Score=109.21 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=99.7
Q ss_pred ccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324 147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (343)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~ 225 (343)
+...++...+..|.. .++.+++|||||+|.++..++..+ ..+|+++|-++.+++..++|++..+++|+.++.+|+.+.
T Consensus 18 TK~EIRal~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 333444444444433 788999999999999999999554 349999999999999999999999999999999999886
Q ss_pred ccCC-CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 226 KLER-QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 226 ~~~~-~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
..+. ++|.|+..+. ..+ ..+++.+...|||||++++....-. .....+.++
T Consensus 97 L~~~~~~daiFIGGg-~~i----------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 97 LPDLPSPDAIFIGGG-GNI----------EEILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred hcCCCCCCEEEECCC-CCH----------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 4332 7999998876 333 4678999999999999999655443 333444444
No 87
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.44 E-value=2.1e-12 Score=116.65 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=91.8
Q ss_pred CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTL 240 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~l 240 (343)
+.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|+..++ ++++++|+.+... .++||+|++|..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999999876 22489999999999999999998765 4789999876422 3579999999764
Q ss_pred cccc----c---------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324 241 DAIG----L---------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 288 (343)
Q Consensus 241 ~~i~----~---------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~ 288 (343)
.... + ..++......++..+.++|+|||++++.........+...+.+
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~ 230 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFAR 230 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHH
Confidence 2110 0 1122223457888889999999999998877777776666653
No 88
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.44 E-value=1.5e-12 Score=115.69 Aligned_cols=109 Identities=30% Similarity=0.503 Sum_probs=92.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l 240 (343)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+..++.+...|+.+... +++||+|++..++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3477999999999999999988865 799999999999999999887765468999999877653 3789999999988
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
+++ .+...+++++.++|+|||.+++..++...
T Consensus 123 ~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 154 (224)
T TIGR01983 123 EHV-------PDPQAFIRACAQLLKPGGILFFSTINRTP 154 (224)
T ss_pred HhC-------CCHHHHHHHHHHhcCCCcEEEEEecCCCc
Confidence 877 35567889999999999999998776653
No 89
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.44 E-value=1.8e-12 Score=115.96 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=89.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++...+. .++.+..+|+.+... .+.||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 356799999999999999998875 35999999999999999998876443 368999999988764 47899999988
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
+++++ .+...+++++.++|+|||.+++.....
T Consensus 130 ~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 130 GLRNV-------PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccccC-------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 87766 345678899999999999998865443
No 90
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=6.4e-12 Score=122.45 Aligned_cols=129 Identities=23% Similarity=0.333 Sum_probs=101.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~ 235 (343)
.++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++++...|+.++.++++|+.... ..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 56789999999999999999886 2 2489999999999999999999999888999999998764 146899999
Q ss_pred ECccccc---cccCCCC-----hhh-------HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324 236 DKGTLDA---IGLHPDG-----PLK-------RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ 291 (343)
Q Consensus 236 ~~~~l~~---i~~~~~~-----~~~-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~ 291 (343)
+...... +..+++. +.+ ...++.++.++|||||+++.++|....++....+..|..
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 8654322 2112221 111 357889999999999999999999988877777765543
No 91
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.43 E-value=3.4e-12 Score=116.31 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=98.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|..+..+++. + ...|+++|+++.+++.++++++..++.++.+++.|...... .+.||.|+++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 56789999999999999998875 2 23799999999999999999999998889999999876542 457999998754
Q ss_pred ccccc---cCCCC-----hh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhh
Q 019324 240 LDAIG---LHPDG-----PL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 290 (343)
Q Consensus 240 l~~i~---~~~~~-----~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~ 290 (343)
..... .+|+. .. ....+|+++.++|||||+++.++|.....+....+..|-
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l 215 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLL 215 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHH
Confidence 43221 11111 11 224588999999999999999999888776555555443
No 92
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.5e-12 Score=112.19 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=89.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|..+..|++.. .+|+.+|..+...+.|++|+...|..|+.+.++|...-.. ..+||.|+..+...
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~ 149 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAP 149 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccC
Confidence 778999999999999999999984 3899999999999999999999999899999999988654 58999999988887
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
.+. +.+.+.||+||++++-..
T Consensus 150 ~vP-------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 150 EVP-------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCC-------------HHHHHhcccCCEEEEEEc
Confidence 774 678889999999999765
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=4.1e-12 Score=116.40 Aligned_cols=125 Identities=22% Similarity=0.284 Sum_probs=92.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..++... ..+++|+|+|+.+++.+++++......++.++.+|+.+....++||+|+++..+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 467899999999999999999873 3489999999999999999987333357999999987654457899999986542
Q ss_pred ccc-------------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 242 AIG-------------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 242 ~i~-------------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
... -+.++......+++++.++|+|||++++.........+.+.+.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~ 251 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLA 251 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHH
Confidence 110 0112223446788899999999999999765544444444443
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.42 E-value=3.2e-12 Score=120.19 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=94.6
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
...++.+|||+|||+|.++..++..+. .++|+|+++.|+..+++|+...+++++.+.++|+.+.+. +++||+|+++.+
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 346788999999999999998887765 899999999999999999999888778999999998765 578999999876
Q ss_pred cccccc-CCCCh-hhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 240 LDAIGL-HPDGP-LKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 240 l~~i~~-~~~~~-~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
+..-.. ..... .....+++++.++|||||++++..+...
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 543211 11111 2346789999999999999999877653
No 95
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=4.9e-12 Score=112.29 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC----ccCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~----~~~~~fD~V~~~ 237 (343)
.++.+|||+|||+|.++..+++. +...|+|+|+++.|++.+.+++... +|+.++.+|+... ...++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~d 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQD 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEEC
Confidence 67889999999999999999987 3248999999999999888776543 4899999998753 224679999864
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.. .+.....+++++.++|||||.++++
T Consensus 149 ~~---------~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 149 VA---------QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CC---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 1223345679999999999999995
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.41 E-value=2.7e-12 Score=113.29 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=83.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++.++++..+|..+... .++||+|++...+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 567899999999999999888774 4899999999999999999998888789999999866433 47899999977654
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
.+ .+.+.+.|+|||++++...
T Consensus 156 ~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 EI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh-------------hHHHHHhcCCCcEEEEEEc
Confidence 43 2567899999999998765
No 97
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=2e-12 Score=118.42 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=77.7
Q ss_pred CCCeEEEEccCccHHHHHHHhcC----CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g----~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
+..+|||+|||+|.++..+++.. ...++|+|+|+.|++.|+++. +++.+.++|+.+.++ +++||+|++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEec
Confidence 45689999999999999988652 126999999999999998753 478999999988775 57899999753
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
.- ..++++.|+|||||++++..++..
T Consensus 160 ~~--------------~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 160 AP--------------CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred CC--------------CCHHHHHhhccCCCEEEEEeCCCc
Confidence 21 124789999999999999877654
No 98
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=3.2e-12 Score=114.31 Aligned_cols=108 Identities=30% Similarity=0.466 Sum_probs=90.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l 240 (343)
.++.+|||||||+|.++..+++.+. +++++|+++.+++.++++....+. ++.+...|+.+.. ..+.||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4578999999999999999998865 799999999999999998877665 6888888887764 35789999999888
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
+++ .+...+++.+.++|+|||.+++..++...
T Consensus 125 ~~~-------~~~~~~l~~~~~~L~~gG~l~v~~~~~~~ 156 (233)
T PRK05134 125 EHV-------PDPASFVRACAKLVKPGGLVFFSTLNRNL 156 (233)
T ss_pred hcc-------CCHHHHHHHHHHHcCCCcEEEEEecCCCh
Confidence 776 24456789999999999999998776543
No 99
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=7.9e-12 Score=121.58 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=98.4
Q ss_pred cCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEEC
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDK 237 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~ 237 (343)
..++.+|||+|||+|..+..+++.+. ..|+|+|+++.+++.+++++...|+ ++.++++|+.+... .++||.|+++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEEC
Confidence 36788999999999999999998743 4899999999999999999999887 57899999987532 4679999987
Q ss_pred cccccc---ccCCC-----Chh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhh
Q 019324 238 GTLDAI---GLHPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 290 (343)
Q Consensus 238 ~~l~~i---~~~~~-----~~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~ 290 (343)
...... .-+++ ... ....++..+.++|||||++++++|.....+....+..|.
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l 388 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL 388 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHH
Confidence 654321 11111 111 124688999999999999999999777666655555444
No 100
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.41 E-value=3.4e-12 Score=111.43 Aligned_cols=103 Identities=25% Similarity=0.320 Sum_probs=84.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~ 237 (343)
.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++..+++ .++.++.+|+.+.. ..+.||.|++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 57889999999999999998764 3 34899999999999999999998884 68999999987642 24689999985
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
... .....+++.+.++|||||++++..+
T Consensus 119 ~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 119 GGS----------EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCc----------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 432 2344678999999999999998554
No 101
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=4.2e-12 Score=115.80 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=83.5
Q ss_pred CCCeEEEEccCccHHHHHH-H-hc-CCCcEEEEeCChHHHHHHHHHHHH-cCC-CceEEEEccCCCCcc-CCCccEEEEC
Q 019324 164 SSWSVLDIGTGNGLLLQEL-S-KQ-GFSDLTGVDYSEDAINLAQSLANR-DGF-SCIKFLVDDVLDTKL-ERQFQLVMDK 237 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~l-a-~~-g~~~v~gvD~s~~~i~~a~~~~~~-~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~ 237 (343)
++++|+|||||.|.++..+ + .. ...+++|+|+++.+++.|++.+.. .++ ++++|.++|+.+... .+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6889999999988554433 3 23 234799999999999999999964 565 469999999988643 4789999998
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
++.++ + ..+...+++++.+.|+|||.+++-+..
T Consensus 203 -ALi~~----d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 203 -ALVGM----D-KEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred -ccccc----c-cccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 54433 1 245567899999999999999997743
No 102
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.40 E-value=4.3e-12 Score=112.29 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=88.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. ...++.+..+|+.+.+. .++||+|++..+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 3578999999999999999988754 389999999999999998875 22478999999988764 468999999887
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
++++ .+...+++++.++|+|||++++.....
T Consensus 116 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 116 LRNV-------TDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eCCc-------ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 7665 355678999999999999999866543
No 103
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=5.8e-12 Score=123.22 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=98.4
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEEC
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK 237 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~ 237 (343)
..++.+|||+|||+|..+..+++. +...|+|+|+++.+++.+++|+...|+.+++++++|+.+.. +.++||+|+++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 356789999999999999999886 23489999999999999999999999878999999998753 24789999987
Q ss_pred ccccccc---cCCCC-----hhh-------HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324 238 GTLDAIG---LHPDG-----PLK-------RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL 289 (343)
Q Consensus 238 ~~l~~i~---~~~~~-----~~~-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~ 289 (343)
....... .+|+. ..+ ...+++.+.++|||||.++.++|....++....+..|
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~ 394 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAF 394 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHH
Confidence 6533221 11211 111 2357899999999999999998888766655544443
No 104
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.37 E-value=7.3e-12 Score=116.68 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=87.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
.+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++++...++ ++++++.+|+.+..++ .+|+|++..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~l 225 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRIL 225 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhh
Confidence 567899999999999999999883 248999998 7899999999988887 4799999999875554 47999887776
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++. .......+++++++.|+|||++++...
T Consensus 226 h~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 226 YSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 544 234556789999999999999999755
No 105
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.36 E-value=9.3e-12 Score=95.10 Aligned_cols=101 Identities=28% Similarity=0.416 Sum_probs=84.3
Q ss_pred eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccccccc
Q 019324 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~ 244 (343)
+|||+|||+|.++..+++.+..+++++|+++.++..+++........+++++..|+.+... .++||+|+++.+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 5899999999999999885445999999999999999865444444579999999988763 5789999999988763
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
......+++.+.+.|+|||.+++.
T Consensus 80 -----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 256678889999999999999886
No 106
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.35 E-value=8.1e-12 Score=106.04 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=83.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~ 239 (343)
.++.+|||+|||.|.++..|.+.-....+|+|+++..+..|.++ .+.++++|+.+.- ++++||.|+++.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 66899999999999999999886334899999999999888873 6789999998753 3789999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
++++ ..+..+|+++.|+ |...+++.+|.-...
T Consensus 85 LQ~~-------~~P~~vL~EmlRV---gr~~IVsFPNFg~W~ 116 (193)
T PF07021_consen 85 LQAV-------RRPDEVLEEMLRV---GRRAIVSFPNFGHWR 116 (193)
T ss_pred HHhH-------hHHHHHHHHHHHh---cCeEEEEecChHHHH
Confidence 9998 5666777777655 668888888775443
No 107
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=7.8e-12 Score=119.77 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=94.5
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc-----cCCCccE
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQFQL 233 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~-----~~~~fD~ 233 (343)
...++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++|+..+++. +++++++|+.+.. ..++||+
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34568899999999999998877777669999999999999999999999874 7999999998752 1358999
Q ss_pred EEECccccccccCCCC----hhhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324 234 VMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS 287 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~----~~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~ 287 (343)
|+++...-.- .... ......++..+.++|+|||++++.+|+.. .+.+.+.+.
T Consensus 297 VilDPP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 297 IVMDPPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred EEECCCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 9998764211 0000 01234556678999999999999888754 344444443
No 108
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.35 E-value=6.5e-12 Score=117.32 Aligned_cols=111 Identities=26% Similarity=0.358 Sum_probs=85.6
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-------C---CceEEEEccCCCCc-----cC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-------F---SCIKFLVDDVLDTK-----LE 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-------~---~~i~~~~~D~~~~~-----~~ 228 (343)
++.+|||+|||-|..+......+...++|+|+|..+|+.|+++..... . -...|+.+|..... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 688999999999998888888877899999999999999999983211 0 14678888887543 12
Q ss_pred --CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 229 --RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 229 --~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
..||+|-|...+|+.. ........+|+++.+.|+|||+++.+++..
T Consensus 142 ~~~~FDvVScQFalHY~F---ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAF---ESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 5999999999998874 555677789999999999999999998855
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.35 E-value=2.5e-12 Score=112.56 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=81.8
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
+.++.+|||||||+|..+..|+.. |.. .|+++|..+..++.|++++...+..|+.+.++|...... ..+||.|++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 478999999999999999999887 432 699999999999999999999998899999999876543 57899999988
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
....+. ..+.+.|++||++++....
T Consensus 150 a~~~ip-------------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 150 AVPEIP-------------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp BBSS---------------HHHHHTEEEEEEEEEEESS
T ss_pred ccchHH-------------HHHHHhcCCCcEEEEEEcc
Confidence 776552 6688889999999996543
No 110
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.35 E-value=7e-12 Score=128.77 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=96.9
Q ss_pred cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc--cCCCccEEEEC
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LERQFQLVMDK 237 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~--~~~~fD~V~~~ 237 (343)
..++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++|+..+++. +++++++|+.++. ..++||+|+++
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3467899999999999999999988768999999999999999999999884 7999999987642 25689999998
Q ss_pred ccccccccC----CCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 238 GTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 238 ~~l~~i~~~----~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
...-.-.-. .........++..+.++|+|||+++++++........+.+.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~ 669 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLA 669 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHH
Confidence 653211000 01123445678889999999999999877766554444443
No 111
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.35 E-value=1e-11 Score=110.64 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=79.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..+++.+. .|+|+|+|+.+++.|+++....+. .++.+..+|+.. .+++||+|++..+++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhh
Confidence 4577999999999999999998875 799999999999999999887765 479999999543 357899999998886
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGL 269 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~ 269 (343)
++. ......+++.+.+.++++++
T Consensus 139 ~~~-----~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 139 HYP-----QEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cCC-----HHHHHHHHHHHHhhcCCeEE
Confidence 652 24556777888887654443
No 112
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.34 E-value=1.2e-11 Score=108.83 Aligned_cols=113 Identities=24% Similarity=0.300 Sum_probs=81.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCCc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF 231 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~f 231 (343)
.++.+|||||||+|.++..+++. +. ..|+|+|+++. .+.+++.++++|+.+.. .+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 56789999999999999999887 22 48999999981 12357899999999853 25789
Q ss_pred cEEEECccccccccCCC-Ch----hhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324 232 QLVMDKGTLDAIGLHPD-GP----LKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS 287 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~~-~~----~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~ 287 (343)
|+|+++...+... .+. .. .....+++++.++|||||.+++..+.. ...++...+.
T Consensus 119 D~V~S~~~~~~~g-~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~ 179 (209)
T PRK11188 119 QVVMSDMAPNMSG-TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR 179 (209)
T ss_pred CEEecCCCCccCC-ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH
Confidence 9999976554432 110 00 012468899999999999999965544 3455555554
No 113
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.34 E-value=1e-11 Score=108.00 Aligned_cols=107 Identities=11% Similarity=-0.027 Sum_probs=83.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l 240 (343)
.++.+|||+|||+|.+++.++.++..+|+++|.++.+++.+++|++.+++.++.++++|+.+.. ...+||+|+++..+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 4567999999999999997666666799999999999999999999998878999999987642 23579999998874
Q ss_pred cccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCC
Q 019324 241 DAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS 277 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~ 277 (343)
.. ......++.+. .+|+|+|++++.+...
T Consensus 132 ~~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 132 RK--------GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CC--------ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 21 11223334443 3589999999876553
No 114
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=7.2e-12 Score=123.72 Aligned_cols=104 Identities=21% Similarity=0.373 Sum_probs=84.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--cc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--~~-~~~fD~V~~~~~ 239 (343)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++... ..+++.++++|+... ++ +++||+|+++.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 346799999999999999999985 489999999999998765332 125799999999643 33 578999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
++++. ......+++++.++|||||++++..
T Consensus 113 l~~l~-----~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 113 LMYLS-----DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHhCC-----HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 88873 2345688999999999999999853
No 115
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.33 E-value=1.7e-11 Score=115.88 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=90.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC---ccCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~---~~~~~fD~V~~~~ 238 (343)
..+..+||||||+|.++..++.. +...++|+|+++.++..+.+++...+++|+.++++|+... ..++++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34568999999999999999987 3348999999999999999999999988999999998653 2368999999875
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
...+..- .........+++.+.++|+|||.+.+.+.....
T Consensus 201 PdPW~Kk-rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 201 PVPWDKK-PHRRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred CCCcccc-chhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 5432200 000111247899999999999999997766553
No 116
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.33 E-value=5.3e-11 Score=110.54 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCC-ccCCCc----c-E
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDT-KLERQF----Q-L 233 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~-~~~~~f----D-~ 233 (343)
.++.+|||+|||+|..+..|++.. ..+|+|+|+|+.|++.+++++.... .-++.++++|+.+. .....+ . +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 346799999999999999999873 2489999999999999999876532 12577899999874 332222 2 3
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+++..++.++ .+.+...++++++++|+|||.+++..-
T Consensus 142 ~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 142 FFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3333455444 356677899999999999999998543
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.32 E-value=3e-11 Score=104.54 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=80.0
Q ss_pred cCCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCC
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQ 230 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~ 230 (343)
..++.+|||+|||+|.++..++... ..+|+|+|+|+.+ ..+++.+++.|+.+.. ..++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 3678899999999999999888762 2379999999864 1247889999987642 2457
Q ss_pred ccEEEECcccccccc----CCCChhhHHHHHHHHhhccCCCcEEEEEecC-CChHHHHHHHH
Q 019324 231 FQLVMDKGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN-STKDELVHEVS 287 (343)
Q Consensus 231 fD~V~~~~~l~~i~~----~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~-~~~~~~~~~~~ 287 (343)
||+|++++..+.... ++........++..+.++|+|||++++.... ....++...++
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 999999764321110 1111123457889999999999999996543 33445555443
No 118
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.32 E-value=1.1e-11 Score=111.63 Aligned_cols=120 Identities=23% Similarity=0.318 Sum_probs=96.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--C----ceEEEEccCCCCc------c-CC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--S----CIKFLVDDVLDTK------L-ER 229 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~----~i~~~~~D~~~~~------~-~~ 229 (343)
.+...+|++|||-|..++..-..|...++|+||++..|+.|+++...... . .+.|+.+|..... + +.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 56788999999999999999888888999999999999999998764321 1 3789999987643 1 33
Q ss_pred CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
+||+|-|.+++|+-. ........+|.++.++|+|||++|-+.|+. +.++..++
T Consensus 196 ~fDivScQF~~HYaF---etee~ar~~l~Nva~~LkpGG~FIgTiPds--d~Ii~rlr 248 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAF---ETEESARIALRNVAKCLKPGGVFIGTIPDS--DVIIKRLR 248 (389)
T ss_pred CcceeeeeeeEeeee---ccHHHHHHHHHHHHhhcCCCcEEEEecCcH--HHHHHHHH
Confidence 499999999998763 555777789999999999999999886644 55555555
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.32 E-value=3.1e-11 Score=117.48 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=96.7
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc---cCCCccEEEE
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK---LERQFQLVMD 236 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~---~~~~fD~V~~ 236 (343)
..++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++..|+. .+.+..+|..... ..++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 357889999999999999999886 3348999999999999999999998875 2333667765543 2468999998
Q ss_pred Ccccccccc---CCCC-----hh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324 237 KGTLDAIGL---HPDG-----PL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ 291 (343)
Q Consensus 237 ~~~l~~i~~---~~~~-----~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~ 291 (343)
.......+. +|+- +. ....+|.++.++|||||++++++|....++....+..|..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 654333221 2221 11 1357889999999999999999999987776666655543
No 120
>PRK06202 hypothetical protein; Provisional
Probab=99.31 E-value=2.2e-11 Score=108.95 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=79.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhc----CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~----g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~ 236 (343)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.|+++.... ++.+.+.+....+ .+++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence 45679999999999998888752 32 38999999999999999876433 4566666555443 3579999999
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
+.+++|+. ..+...+++++.++++ |.+++......
T Consensus 136 ~~~lhh~~-----d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLD-----DAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCC-----hHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99998883 2235578999999998 55566555544
No 121
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=7.1e-11 Score=102.54 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=109.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-----CC-----------------------
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FS----------------------- 213 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-----~~----------------------- 213 (343)
..+..+|||||.+|.++..+++. |...|.|+||++..|+.|++++...- +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45789999999999999999998 77799999999999999999765321 00
Q ss_pred --------------ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 214 --------------CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 214 --------------~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
|..+...|+... ....||+|+|..+-.+|.+..-+ ..+..+++.++++|.|||+|++..-.+..
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 112222233311 24689999999888888654433 56678999999999999999997666654
Q ss_pred HHHHH-HHHhhhhccccccccchhh-hhcccCCCCeeEecccccCCcccccCccCeeEeEEEEeeC
Q 019324 280 DELVH-EVSNLSQRRIGVSQEHEIK-DEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343 (343)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~ 343 (343)
..... ..+.+....+.-...|... +...-...+|+....++.-+ -++.+|.......|+++
T Consensus 215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~---~~~skgf~R~i~~y~Kk 277 (288)
T KOG2899|consen 215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIV---SAASKGFDRPILLYRKK 277 (288)
T ss_pred HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccc---cccCccccceeeeeecc
Confidence 33222 2223322222222222221 11111124556555544222 23445666666666653
No 122
>PRK00811 spermidine synthase; Provisional
Probab=99.30 E-value=5.1e-11 Score=109.57 Aligned_cols=110 Identities=19% Similarity=0.298 Sum_probs=84.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCc--cCCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTK--LERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~--~~~~fD~V 234 (343)
..+.+||+||||.|..+..++++ +..+|+++|+++.+++.|++.+...+ .++++++.+|+.... ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999999887 55689999999999999999876421 258999999987753 25789999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++...-. . .+........+++.+.++|+|||++++...
T Consensus 155 i~D~~dp-~--~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDP-V--GPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9864321 1 112122335788999999999999998543
No 123
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.9e-11 Score=99.83 Aligned_cols=83 Identities=29% Similarity=0.410 Sum_probs=73.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
..+.+|+|+|||||.+++..+-.|+..|+|+|+++.+++.+++|+...+ .++.|+++|+.+. ...+|.++.|..+..
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~--~~~~dtvimNPPFG~ 120 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF--RGKFDTVIMNPPFGS 120 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhc--CCccceEEECCCCcc
Confidence 5678999999999999999999998899999999999999999999854 4899999999985 467999999999877
Q ss_pred cccCCC
Q 019324 243 IGLHPD 248 (343)
Q Consensus 243 i~~~~~ 248 (343)
..-|.|
T Consensus 121 ~~rhaD 126 (198)
T COG2263 121 QRRHAD 126 (198)
T ss_pred ccccCC
Confidence 654543
No 124
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.29 E-value=6.1e-11 Score=110.86 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=81.4
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD 241 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l~ 241 (343)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..+++++++|+++|+.+.. ..+.||+|+++..-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 46899999999999999999986 489999999999999999999999878999999997753 235799999875532
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 282 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~ 282 (343)
.+. . .+ .++...++|+++++++....+..+.
T Consensus 252 G~~------~---~~-~~~l~~~~~~~ivyvsc~p~t~~rd 282 (315)
T PRK03522 252 GIG------K---EL-CDYLSQMAPRFILYSSCNAQTMAKD 282 (315)
T ss_pred Ccc------H---HH-HHHHHHcCCCeEEEEECCcccchhH
Confidence 210 1 12 2333446788777766544444433
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=2.7e-11 Score=108.32 Aligned_cols=111 Identities=18% Similarity=0.292 Sum_probs=88.0
Q ss_pred cchhhhhccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc----
Q 019324 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK---- 226 (343)
Q Consensus 154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~---- 226 (343)
.++..+....++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|+++++..|+. +++++.+|+.+.-
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 34455556677899999999999988888764 2348999999999999999999999884 7999999997741
Q ss_pred ---cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 227 ---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 227 ---~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
..++||+|+....- .....+++.+.++|+|||++++..
T Consensus 138 ~~~~~~~fD~VfiDa~k----------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK----------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCCH----------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 13689999975321 233467899999999999998743
No 126
>PHA03411 putative methyltransferase; Provisional
Probab=99.28 E-value=3.7e-11 Score=108.12 Aligned_cols=104 Identities=15% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
...+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++. +++.++++|+.+.....+||+|+++.++.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 35689999999999999887752 348999999999999999864 478999999998766678999999998876
Q ss_pred cccCCCChhh---------------HHHHHHHHhhccCCCcEEEEEe
Q 019324 243 IGLHPDGPLK---------------RIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 243 i~~~~~~~~~---------------~~~~l~~~~~~LkpgG~lii~~ 274 (343)
... ..... ...++.....+|+|+|.+++..
T Consensus 139 l~~--~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 139 INT--TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCc--hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 521 11111 2467788899999999887753
No 127
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.27 E-value=2.5e-11 Score=105.60 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=75.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Cc-c-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-L-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~-~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++.....++|+|+|+.+++.+++ .+++++++|+.+ .. . +++||+|+++.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 4577999999999999999987643479999999999999875 257888888875 22 2 578999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
++++ .+...+++++.+.++ .++++.++.
T Consensus 85 l~~~-------~d~~~~l~e~~r~~~---~~ii~~p~~ 112 (194)
T TIGR02081 85 LQAT-------RNPEEILDEMLRVGR---HAIVSFPNF 112 (194)
T ss_pred hHcC-------cCHHHHHHHHHHhCC---eEEEEcCCh
Confidence 9887 345567788877655 445555544
No 128
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=8.6e-11 Score=103.77 Aligned_cols=131 Identities=23% Similarity=0.285 Sum_probs=94.0
Q ss_pred cCccccccccchhhhhcc-----CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEE
Q 019324 145 LNHVEDLKSEPVEENDKY-----LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKF 217 (343)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~-----~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~ 217 (343)
..+.+.+++.+...++.. ..+..|||+|||+|.++..++.. +...|+|+|.|+.|+..|.+|+..+++. ++.+
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 334555555555444432 34568999999999999999876 5458999999999999999999998874 5777
Q ss_pred EEccCCCCc------cCCCccEEEECcccc-------------------ccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 218 LVDDVLDTK------LERQFQLVMDKGTLD-------------------AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 218 ~~~D~~~~~------~~~~fD~V~~~~~l~-------------------~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
+..++.... +.+++|++++|..+- ++.-..++......++.-+.|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 755444322 258999999996531 0000223344556788889999999999999
Q ss_pred Eec
Q 019324 273 TSC 275 (343)
Q Consensus 273 ~~~ 275 (343)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 766
No 129
>PRK04457 spermidine synthase; Provisional
Probab=99.26 E-value=2.6e-11 Score=110.27 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=85.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~ 238 (343)
.++.+|||||||+|.++..++.. +..+++++|+++.+++.|++++...+. ++++++.+|+.+.. .+++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999876 334899999999999999998765543 58999999987642 246899999853
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
++.. .+........+++.+.++|+|||++++.....
T Consensus 145 -~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 -FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred -CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 2211 11111233578999999999999999865444
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=4.6e-11 Score=111.24 Aligned_cols=99 Identities=18% Similarity=0.239 Sum_probs=81.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-C-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~ 239 (343)
.++.+|||+|||+|.++..+++.. . ..|+++|+++.+++.|++++...+.+++.++++|+.+... .++||+|++...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 567899999999999999998862 1 2699999999999999999998888889999999876543 367999998755
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+..+ ...+.+.|+|||++++..
T Consensus 159 ~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 4333 245678999999988854
No 131
>PHA03412 putative methyltransferase; Provisional
Probab=99.25 E-value=5.2e-11 Score=104.83 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=78.3
Q ss_pred CCCeEEEEccCccHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~----g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~ 239 (343)
.+.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+++. .++.++..|+.....+++||+|++|..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 3679999999999999988874 2348999999999999999875 368899999987666779999999998
Q ss_pred ccccccCC-----CChhhHHHHHHHHhhccCCCcE
Q 019324 240 LDAIGLHP-----DGPLKRIMYWDSVSKLVAPGGL 269 (343)
Q Consensus 240 l~~i~~~~-----~~~~~~~~~l~~~~~~LkpgG~ 269 (343)
+..+.... ++......++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 76543211 1223345688888887777765
No 132
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.4e-10 Score=100.73 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=95.5
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEEC
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDK 237 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~ 237 (343)
.+.++.+|||.|.|+|.++..|+.. | ..+|+.+|+-+...+.|++|+...++.+ +++..+|+.+....+.||.|+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LD 170 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLD 170 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEc
Confidence 4588999999999999999999964 3 3589999999999999999999988865 99999999998777799999863
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHHhh
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSNL 289 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~~~ 289 (343)
+ .++..+++.+.++|||||.+++-+++-+ .....+.++++
T Consensus 171 -----m-------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 171 -----L-------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred -----C-------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 2 3556788999999999999988766543 34444445443
No 133
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=8.5e-11 Score=101.66 Aligned_cols=126 Identities=10% Similarity=-0.015 Sum_probs=90.9
Q ss_pred CccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCC
Q 019324 146 NHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~ 224 (343)
++.+.+.+.++.++....++.+|||++||+|.+++.++.+|+..|+++|.++.+++.+++|++.+++. +++++++|+.+
T Consensus 31 pt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 31 PTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred CchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 33334455555555444568899999999999999999998879999999999999999999999874 68999999955
Q ss_pred Cc--c--C-CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 225 TK--L--E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 225 ~~--~--~-~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
.. . . ..||+|+....+..- ........+.+ ..+|+++|++++.+...
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy~~~-----~~~~~l~~l~~-~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPFFNG-----ALQALLELCEN-NWILEDTVLIVVEEDRE 162 (189)
T ss_pred HHHHhhccCCCceEEEECcCCCCC-----cHHHHHHHHHH-CCCCCCCeEEEEEecCC
Confidence 31 1 2 247888887766421 11222222222 45789999988876543
No 134
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=1.8e-10 Score=121.07 Aligned_cols=154 Identities=13% Similarity=0.148 Sum_probs=108.8
Q ss_pred CCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC----------------CceEEEEccCCCCcc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----------------SCIKFLVDDVLDTKL 227 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~----------------~~i~~~~~D~~~~~~ 227 (343)
+.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++|+..+++ .+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999873 34899999999999999999987642 369999999987643
Q ss_pred C--CCccEEEECcccc------c--------------------ccc-----CCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 228 E--RQFQLVMDKGTLD------A--------------------IGL-----HPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 228 ~--~~fD~V~~~~~l~------~--------------------i~~-----~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
. .+||+|++|...- . ..+ +.++..-...++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 3699999986420 0 111 13344445678889999999999999988
Q ss_pred cCCChHHHH-HHHHh--hh------hcccc--ccccchhhhhcccCCCCeeEecc
Q 019324 275 CNSTKDELV-HEVSN--LS------QRRIG--VSQEHEIKDEEACREPPFRYLNH 318 (343)
Q Consensus 275 ~~~~~~~~~-~~~~~--~~------~~~~~--~~~~~~~~~~~~~~~~~f~~~~~ 318 (343)
...+.+.+. +.++. |. .+... ..+...+..++...+..|++...
T Consensus 279 G~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRITKLWQTKINQAADTDISALVEIEKNSRHRFEFFMG 333 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCeeEEeeehhhhccccchHHHHHHhhcCccceeeeec
Confidence 877777776 35543 21 11111 12233334555566677777665
No 135
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.22 E-value=2e-10 Score=112.29 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=83.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c-CCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~-~~~fD~V~~~ 237 (343)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++|+..+++.+++++++|+.+.. . +++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 466899999999999999999886 589999999999999999999998888999999987532 1 3579999987
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
.....+ ...++.+.+ ++|+++++++....+....+.
T Consensus 375 PPr~g~----------~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~ 410 (443)
T PRK13168 375 PPRAGA----------AEVMQALAK-LGPKRIVYVSCNPATLARDAG 410 (443)
T ss_pred cCCcCh----------HHHHHHHHh-cCCCeEEEEEeChHHhhccHH
Confidence 554221 234455555 689888777654444333333
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=3.3e-10 Score=96.33 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~ 241 (343)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. .++++++.+|+.+.... ..||.|+++..++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 456799999999999999999985 5899999999999999998754 24899999999998654 4699999987664
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.. ......+++.. .+.++|.+++.
T Consensus 89 ~~------~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 89 IS------TPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred cH------HHHHHHHHhcC--CCcceEEEEEE
Confidence 32 12233333321 24578888775
No 137
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.21 E-value=2.1e-10 Score=109.67 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=93.1
Q ss_pred cCcccCccccccccchhhhhcc---CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEE
Q 019324 141 QGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 217 (343)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~ 217 (343)
+...+.+.+...+.+...+... .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++|++.+++++++|
T Consensus 207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~ 285 (374)
T TIGR02085 207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSF 285 (374)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence 3334444444444444333221 356799999999999999999876 489999999999999999999998888999
Q ss_pred EEccCCCCcc--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 218 LVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 218 ~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
+++|+.+... ..+||+|+.+..-..+ ...+++.+. .++|+++++++....+..+.+.
T Consensus 286 ~~~d~~~~~~~~~~~~D~vi~DPPr~G~---------~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~ 344 (374)
T TIGR02085 286 AALDSAKFATAQMSAPELVLVNPPRRGI---------GKELCDYLS-QMAPKFILYSSCNAQTMAKDIA 344 (374)
T ss_pred EECCHHHHHHhcCCCCCEEEECCCCCCC---------cHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHH
Confidence 9999976432 2469999987664322 123344454 4789988887754444444333
No 138
>PTZ00146 fibrillarin; Provisional
Probab=99.19 E-value=2.2e-10 Score=104.22 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~ 236 (343)
.++.+|||+|||+|.++..+++. + ...|+++|+|+.+.+.+.+.+... +|+.++..|+.... +..++|+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 67889999999999999999987 3 238999999998765555544322 48899999987532 2457999998
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
... . +.+...++.++.++|||||.|++.
T Consensus 209 Dva------~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA------Q---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC------C---cchHHHHHHHHHHhccCCCEEEEE
Confidence 642 1 134445667899999999999994
No 139
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=110.49 Aligned_cols=126 Identities=24% Similarity=0.297 Sum_probs=99.3
Q ss_pred hhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCcc-----CCCc
Q 019324 159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----ERQF 231 (343)
Q Consensus 159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~-----~~~f 231 (343)
+.....+++||++.|=||.++...+..|+.+|++||.|..+++.|++|++.+|++ ++.|+++|+.++-. ..+|
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 3344558999999999999999999999889999999999999999999999984 58999999988632 3589
Q ss_pred cEEEECccccccccCC----CChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHH
Q 019324 232 QLVMDKGTLDAIGLHP----DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEV 286 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~----~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~ 286 (343)
|+|+...+- +.-.+ ....+...++..+.++|+|||++++++|.... +.+.+.+
T Consensus 292 DlIilDPPs--F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i 350 (393)
T COG1092 292 DLIILDPPS--FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII 350 (393)
T ss_pred cEEEECCcc--cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHH
Confidence 999986532 11111 11245567889999999999999999887753 3444443
No 140
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.18 E-value=2.2e-10 Score=98.15 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=87.8
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-cc-CCCccEEEECcccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~~-~~~fD~V~~~~~l~ 241 (343)
.+.-|||||||+|..+..|.+.|. ..+|+|+|+.|++.|.++--. -.++.+|+-.. ++ ++.||-+|+...++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-----gdlil~DMG~GlpfrpGtFDg~ISISAvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-----GDLILCDMGEGLPFRPGTFDGVISISAVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-----cCeeeeecCCCCCCCCCccceEEEeeeee
Confidence 467899999999999999999985 899999999999999973221 24788887654 33 79999999988887
Q ss_pred ccccCCCC-----hhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 242 AIGLHPDG-----PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 242 ~i~~~~~~-----~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
++ +|.+. ...+..++..++.+|++|++.++.....+...
T Consensus 124 WL-cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 124 WL-CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred ee-cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 66 33322 24456788899999999999999877666544
No 141
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.16 E-value=5.5e-11 Score=102.16 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=94.3
Q ss_pred ccCccccccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEcc
Q 019324 144 MLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D 221 (343)
+.++.+.+++.++.++... ..+.++||+.||+|.+++..+.+|+.+|+.||.++.++...++|++..+.. ++.++..|
T Consensus 21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 3445555677777777766 789999999999999999999999999999999999999999999998875 48999999
Q ss_pred CCCCc-----cCCCccEEEECccccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCC
Q 019324 222 VLDTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS 277 (343)
Q Consensus 222 ~~~~~-----~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~ 277 (343)
+...- ...+||+|++..++..- .....+++.+. .+|+++|++++.+...
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKG-------LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHHhhcccCCCceEEEECCCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 65532 25789999998776433 11345666665 8999999999987655
No 142
>PLN02366 spermidine synthase
Probab=99.15 E-value=1e-09 Score=101.73 Aligned_cols=109 Identities=16% Similarity=0.315 Sum_probs=83.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc---cCCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK---LERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~---~~~~fD~V 234 (343)
..+++||+||||.|.++..+++++ ..+|+.+|+++.+++.+++.+...+ -++++++.+|+.... ..++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999884 4589999999999999999875421 258999999976542 24689999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
++...-. . .+........+++.+.++|+|||++++..
T Consensus 170 i~D~~dp-~--~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDP-V--GPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9864321 1 12222234578899999999999998743
No 143
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.15 E-value=9.4e-10 Score=101.52 Aligned_cols=117 Identities=20% Similarity=0.174 Sum_probs=95.2
Q ss_pred hhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCccCC-CccEEE
Q 019324 158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLER-QFQLVM 235 (343)
Q Consensus 158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~~~~-~fD~V~ 235 (343)
.+.+..++..|||-.||||.+++.+.-.|. .++|+|++..|++-++.|++..+++...+... |++..++++ ++|.|+
T Consensus 191 NLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 191 NLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred HHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence 345568889999999999999999999987 89999999999999999999999877766666 999998854 599999
Q ss_pred ECccccccc-cCCCC-hhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 236 DKGTLDAIG-LHPDG-PLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 236 ~~~~l~~i~-~~~~~-~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+.....--. ..... ......+++.+.++||+||++++..+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 976553321 11111 23356788999999999999999887
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.13 E-value=1.2e-09 Score=99.98 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=83.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCCCccEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~~fD~V~ 235 (343)
..+.+||+||||+|.++..+++.+ ..+++++|+++.+++.+++.+...+ .++++++.+|..... ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999999998874 5589999999999999999875432 247888888876532 256899999
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
+..... . ++........+++.+.++|+|||++++...+
T Consensus 151 ~D~~~~-~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 151 VDSTDP-V--GPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EeCCCC-C--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 865421 1 1221122457889999999999999986443
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=99.11 E-value=4e-10 Score=105.25 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=83.0
Q ss_pred cCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHH--H---H--cCCCceEEEEccCCCCc--cCCCc
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA--N---R--DGFSCIKFLVDDVLDTK--LERQF 231 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~--~---~--~~~~~i~~~~~D~~~~~--~~~~f 231 (343)
...+.+||+||||.|..+..+++.+ ..+|+++|+++.+++.|++.. . . ...++++++.+|+.+.. ..+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3567899999999999999998874 458999999999999999721 1 1 12258999999998753 25689
Q ss_pred cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
|+|++... +... .+........+++.+.+.|+|||++++...
T Consensus 228 DVIIvDl~-DP~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFP-DPAT-ELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCC-Cccc-cchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99998742 1110 011123335688999999999999988644
No 146
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.10 E-value=2.9e-10 Score=103.78 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=89.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc----cCCCccEEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK----LERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~----~~~~fD~V~~ 236 (343)
.++++|||+.|=||.++...+..|+.+|++||.|..+++.+++|+..++++ +++|++.|+.+.- ..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 568899999999999999999989889999999999999999999999974 7999999998742 2569999998
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHHH
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEVS 287 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~~ 287 (343)
..+-- ..-...-..+...++..+.++|+|||.+++++|.+.. +.+.+.+.
T Consensus 202 DPPsF-~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 202 DPPSF-AKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp --SSE-ESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence 65421 1001111234557788999999999999988877653 33444444
No 147
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=5.6e-10 Score=94.04 Aligned_cols=90 Identities=18% Similarity=0.406 Sum_probs=71.7
Q ss_pred EEEeCChHHHHHHHHHHHHcC---CCceEEEEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCC
Q 019324 191 TGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP 266 (343)
Q Consensus 191 ~gvD~s~~~i~~a~~~~~~~~---~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp 266 (343)
+|+|+|+.|++.|+++....+ ..+++++++|+.+.+. +++||+|++..+++++ .+...++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcCc
Confidence 489999999999987765322 2479999999999876 5689999999888877 4667889999999999
Q ss_pred CcEEEEEecCCChHHHHHHHH
Q 019324 267 GGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 267 gG~lii~~~~~~~~~~~~~~~ 287 (343)
||.+++.............+.
T Consensus 74 GG~l~i~d~~~~~~~~~~~~~ 94 (160)
T PLN02232 74 GSRVSILDFNKSNQSVTTFMQ 94 (160)
T ss_pred CeEEEEEECCCCChHHHHHHH
Confidence 999999877665544444333
No 148
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.09 E-value=1.9e-11 Score=105.26 Aligned_cols=100 Identities=26% Similarity=0.355 Sum_probs=78.8
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC---ccCCCccEEEECcccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGTLD 241 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~---~~~~~fD~V~~~~~l~ 241 (343)
-.++||+|||||..+..|... ..+++|+|+|.+|++.|.++-... .+.+.|+..+ ..++.||+|.+..++.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----TLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----HHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 579999999999999999887 458999999999999998853322 2233343322 1357899999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
++ .....++--+...|+|||.+.|++-..
T Consensus 200 Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 200 YL-------GALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hh-------cchhhHHHHHHHhcCCCceEEEEeccc
Confidence 88 466778899999999999999975433
No 149
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.08 E-value=1.9e-10 Score=100.04 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=76.4
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECccccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDA 242 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~ 242 (343)
...++|+|||+|.-++.++++ +.+|+|+|+|+.|++.+++.....-. ....+...++.++. .+++.|+|++-.++|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred cceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 348999999999888888888 67999999999999999985432111 11233333333332 2689999999999988
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCc-EEEEEecC
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGG-LLVITSCN 276 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG-~lii~~~~ 276 (343)
+ +...++++++|+||+.| ++.+-..+
T Consensus 113 F--------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 F--------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 7 56678899999998766 66665555
No 150
>PLN02476 O-methyltransferase
Probab=99.07 E-value=1.1e-09 Score=99.59 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=90.5
Q ss_pred ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc-
Q 019324 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK- 226 (343)
Q Consensus 151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~- 226 (343)
....++..+....++++|||||||+|..+.+++.. + ..+|+++|.++...+.|+++++..|+. +++++.+|+.+.-
T Consensus 105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK 184 (278)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 34445555666678899999999999999999874 2 237999999999999999999999985 7999999987642
Q ss_pred -c-----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 227 -L-----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 227 -~-----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+ .++||+|+..+. ......+++.+.++|+|||++++.
T Consensus 185 ~l~~~~~~~~FD~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHhcccCCCCCEEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 357999996432 134567889999999999999985
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.05 E-value=5e-10 Score=97.83 Aligned_cols=109 Identities=20% Similarity=0.316 Sum_probs=86.6
Q ss_pred chhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc----
Q 019324 155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL---- 227 (343)
Q Consensus 155 ~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~---- 227 (343)
++..+....++++||||||++|..+.++++. + ..+|+.+|+++...+.|++++...|+ .+|+++.+|+.+.-.
T Consensus 36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 3444555567899999999999999999975 2 24899999999999999999999888 479999999876421
Q ss_pred ---CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 228 ---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 228 ---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.++||+|+.... ......+++.+.++|+|||++++.
T Consensus 116 ~~~~~~fD~VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD----------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTTTSEEEEEEEST----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCceeEEEEccc----------ccchhhHHHHHhhhccCCeEEEEc
Confidence 257999997542 134457889999999999999996
No 152
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.4e-09 Score=92.28 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=99.7
Q ss_pred cccCccccccccchhhhhc-cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEc
Q 019324 143 HMLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVD 220 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~ 220 (343)
...++.+.+++.++.++.. ...+.++||+.+|+|.+++..+.+|+..++.+|.+..++...++|.+..++ .++.++..
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 3445566677777777777 478999999999999999999999999999999999999999999999885 47899999
Q ss_pred cCCCCc--cC--CCccEEEECccccccccCCCChhhHHHHHHH--HhhccCCCcEEEEEecCC
Q 019324 221 DVLDTK--LE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS--VSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 221 D~~~~~--~~--~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~--~~~~LkpgG~lii~~~~~ 277 (343)
|+.... .. ++||+|+...++..= ..+....+.. -..+|+|+|.+++.....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKG------LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 988431 22 359999998877521 1111222222 567899999999976655
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=95.75 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=87.9
Q ss_pred cchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEE-ccCCCCc---
Q 019324 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLV-DDVLDTK--- 226 (343)
Q Consensus 154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~-~D~~~~~--- 226 (343)
.++..+....++++|||||++.|..+++|+.. + ..+++.||+++.+.+.|+++++..|+. ++..+. +|..+.-
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 34444555578999999999999999999987 3 348999999999999999999999985 488888 4766542
Q ss_pred cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
..++||+|+... ++ .+...+++.+.++|+|||++++.
T Consensus 129 ~~~~fDliFIDa---------dK-~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 129 LDGSFDLVFIDA---------DK-ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cCCCccEEEEeC---------Ch-hhCHHHHHHHHHHhCCCcEEEEe
Confidence 258999999632 11 33446889999999999999994
No 154
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.04 E-value=1.1e-09 Score=104.58 Aligned_cols=112 Identities=30% Similarity=0.427 Sum_probs=93.6
Q ss_pred CCCC-eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324 163 LSSW-SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~-~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l 240 (343)
.+.. ++|-+|||+..++..+.+.|+..|+.+|+|+.+++.+..+... ..+-+.+...|+....+ +++||+|+..+++
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCcc
Confidence 3344 8999999999999999999999999999999999999876542 22468999999999876 6899999999999
Q ss_pred cccccCCCChh---hHHHHHHHHhhccCCCcEEEEEec
Q 019324 241 DAIGLHPDGPL---KRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 241 ~~i~~~~~~~~---~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
|++....+... .....+.++.++|++||+++..++
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99965444433 455778999999999999888666
No 155
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.04 E-value=9.9e-10 Score=107.21 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=78.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c-CCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~-~~~fD~V~~~ 237 (343)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.|++|+..+++.+++|+++|+.+.. . ..+||+|+.+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456899999999999999999874 489999999999999999999999889999999987531 1 3579999976
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
..-..+ ...+++.+.+ ++|+++++++ |+
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyvs-c~ 397 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYVS-CN 397 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEEc-CC
Confidence 542211 1234455443 7898876665 44
No 156
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.03 E-value=5.1e-09 Score=102.23 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=100.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~ 238 (343)
.++.+|||+|||.|.-+..++.. +...|+++|+++.-++.+++|++..|+.++.+...|...+. ..+.||.|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 67889999999999999999886 22379999999999999999999999989999999987653 356899999765
Q ss_pred ccccccc---CCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhh
Q 019324 239 TLDAIGL---HPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 290 (343)
Q Consensus 239 ~l~~i~~---~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~ 290 (343)
....... +|+. . .....+|.++.+.|||||+|+.++|....+|.-..+..|-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L 258 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLK 258 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4433321 1111 0 1114788999999999999999999988877766665443
No 157
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.03 E-value=2.1e-09 Score=102.32 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c---------------
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L--------------- 227 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~--------------- 227 (343)
+.+|||++||+|.++..+++. +.+|+|+|+++.|++.+++|+..+++.+++|+.+|+.+.. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 357999999999999988886 4589999999999999999999999889999999987631 1
Q ss_pred CCCccEEEECcc
Q 019324 228 ERQFQLVMDKGT 239 (343)
Q Consensus 228 ~~~fD~V~~~~~ 239 (343)
...||+|+....
T Consensus 286 ~~~~D~v~lDPP 297 (362)
T PRK05031 286 SYNFSTIFVDPP 297 (362)
T ss_pred CCCCCEEEECCC
Confidence 114899887655
No 158
>PRK03612 spermidine synthase; Provisional
Probab=99.03 E-value=1.1e-09 Score=108.96 Aligned_cols=111 Identities=24% Similarity=0.316 Sum_probs=83.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHH--HH-----cCCCceEEEEccCCCCc--cCCCcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NR-----DGFSCIKFLVDDVLDTK--LERQFQ 232 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~--~~-----~~~~~i~~~~~D~~~~~--~~~~fD 232 (343)
.++++|||||||+|..+..+++++. .+++++|+++.+++.++++. .. ...++++++.+|..+.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4578999999999999999998754 69999999999999999842 21 11257999999988743 257899
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+|+++...... ..........+++.+.++|||||++++...
T Consensus 376 vIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99997432211 000112234678999999999999998654
No 159
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.03 E-value=2.5e-09 Score=101.38 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=76.2
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC----------------
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---------------- 228 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~---------------- 228 (343)
+.+|||+|||+|.++..+++. +.+|+|+|+++.|++.+++|+..+++.+++|+++|+.+....
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 347999999999999988887 458999999999999999999999988899999998763211
Q ss_pred -CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 229 -~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
..||+|+.... .......+++.+. +|+++++++....+..+.+.
T Consensus 277 ~~~~d~v~lDPP---------R~G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~ 321 (353)
T TIGR02143 277 SYNCSTIFVDPP---------RAGLDPDTCKLVQ---AYERILYISCNPETLKANLE 321 (353)
T ss_pred cCCCCEEEECCC---------CCCCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHH
Confidence 13688876544 2122223444444 37777776544433333333
No 160
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.02 E-value=1.2e-09 Score=94.81 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=83.0
Q ss_pred CeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEECccc
Q 019324 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTL 240 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~~~l 240 (343)
..+||||||.|.++..+|.. +...++|+|+....+..+.+++...+++|+.++++|+...- .++++|-|+.+.+=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999987 44489999999999999999999999999999999998842 25889988876543
Q ss_pred ccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 241 DAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 241 ~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
-+.-- |.....-...+++.+.++|+|||.+.+.+-...
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 22200 000011124788999999999999999876654
No 161
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.00 E-value=1.4e-09 Score=99.91 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=82.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccC-CCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~-~~fD~V~~~~~l 240 (343)
.+++.|||+|||+|.++...++.|+.+|+|+|.|.-+ +.|++.+..+++.+ ++++++.+.+..++ ++.|+|++-..=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5689999999999999999999998899999998776 99999999999865 89999999888765 899999984321
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
.++. -......++-.--+.|+|||.++=
T Consensus 138 y~Ll----~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLL----YESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHH----HhhhhhhhhhhhhhccCCCceEcc
Confidence 1110 011222334445688999998864
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.99 E-value=3e-09 Score=90.77 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=75.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC---CCceEEEEccCCCCc----c-CCCccE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTK----L-ERQFQL 233 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~---~~~i~~~~~D~~~~~----~-~~~fD~ 233 (343)
.++.+|||+|||+|..++.++.. +..+|+.+|+++ .++.++.|+..++ ..++.+...|..+.. . ..+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 56889999999999999999998 666999999999 9999999999876 247888888876532 1 358999
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
|++..++..- .....+++-+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9998877543 566778899999999999987776655
No 163
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.3e-08 Score=83.49 Aligned_cols=122 Identities=15% Similarity=0.192 Sum_probs=94.6
Q ss_pred CCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
+.-+||||||+|..+..|++. +..-+.++|++|.+++..++.+..++. ++..++.|+...-..++.|+++.|..+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcCc
Confidence 678999999999999999887 334789999999999999999988886 78999999888655689999998865421
Q ss_pred cc--------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 243 IG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 243 i~--------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
-. -..++..-..+++..+-.+|.|.|.+++.....+ ..+++..++
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 11 1233444456778888899999999999776655 455555444
No 164
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.95 E-value=3.1e-09 Score=92.14 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=70.2
Q ss_pred CCCeEEEEccCccH----HHHHHHhc-----CCC-cEEEEeCChHHHHHHHHHH---------------H----HcC---
Q 019324 164 SSWSVLDIGTGNGL----LLQELSKQ-----GFS-DLTGVDYSEDAINLAQSLA---------------N----RDG--- 211 (343)
Q Consensus 164 ~~~~VLDiGcG~G~----~~~~la~~-----g~~-~v~gvD~s~~~i~~a~~~~---------------~----~~~--- 211 (343)
+..+|+.+||++|. +++.+.+. +.. +|+|+|+|+.+++.|++-. . ..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999994 45555551 212 8999999999999998621 0 001
Q ss_pred -----C-CceEEEEccCCC-CccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 212 -----F-SCIKFLVDDVLD-TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 212 -----~-~~i~~~~~D~~~-~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+ .+|.|.+.|+.+ .+..+.||+|+|.+++-++. ......+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~-----~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD-----PETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC-----HHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0 268999999999 44568999999999997773 4566789999999999999999853
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.94 E-value=6.2e-09 Score=93.62 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=80.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.+..+|||||+|.|.++..+++. +..+++.+|. |.+++.+++ .++|+++.+|+. .+.+. +|+++...+++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS-ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc-ccceeeehhhh
Confidence 44568999999999999999887 3348999999 888998888 259999999999 44555 99999998887
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCC--cEEEEEec
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVITSC 275 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~Lkpg--G~lii~~~ 275 (343)
.. .+.+...+|+++++.|+|| |+|+|...
T Consensus 170 ~~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DW-----SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS------HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hc-----chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 66 3578889999999999999 99999644
No 166
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.94 E-value=4.9e-09 Score=92.96 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=75.4
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECccccc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLDA 242 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~ 242 (343)
...++||||+|.|..+..++.. +.+|+++|.|+.|....+++ +.+++ |..++. .+.+||+|.|.+++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k-------g~~vl--~~~~w~~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK-------GFTVL--DIDDWQQTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC-------CCeEE--ehhhhhccCCceEEEeehhhhhc
Confidence 5678999999999999999887 77999999999998777762 33333 333333 2468999999999987
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
. ..+..+|+.+++.|+|+|++++.
T Consensus 164 c-------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 C-------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred c-------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 6 56678899999999999999984
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=90.03 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=90.0
Q ss_pred CeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEECccc
Q 019324 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTL 240 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~~~l 240 (343)
..+||||||.|.++..+|++ +...++|+|+....+..|.+.+...+++|+.+++.|+.... .+++.|-|+.+++=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999998 44489999999999999999999999889999999988753 24588888876543
Q ss_pred cccc-cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 241 DAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 241 ~~i~-~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
-+.- -|.....-...+++.+.++|+|||.+.+.+-+...-+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e 171 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFE 171 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHH
Confidence 2220 0111112224788999999999999999877665433
No 168
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.93 E-value=5.1e-09 Score=93.74 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=84.5
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc----CCCccE
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----ERQFQL 233 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~----~~~fD~ 233 (343)
.+.++.+|||.|.|+|.++..|+.. + ..+|+.+|+.+...+.|+++++..++. ++.+.+.|+.+..+ +..+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 4488999999999999999999976 3 348999999999999999999999985 79999999975333 357888
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhcc-CCCcEEEEEecCCC-hHHHHHHHH
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~L-kpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
|+..- + .+...+..+.++| ||||++.+-+|+-+ -...++.++
T Consensus 117 vfLDl---------p---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 117 VFLDL---------P---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp EEEES---------S---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEeC---------C---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence 88632 1 2234568999999 89999988666543 344555554
No 169
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.93 E-value=4.4e-09 Score=90.20 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=81.7
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCCC-c---------EEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc-cC
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGFS-D---------LTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-LE 228 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~-~---------v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~-~~ 228 (343)
...++..|||..||+|.+.+..+..+.. . ++|+|+++.+++.+++|+...++. .+.+.+.|+.+++ .+
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~ 104 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPD 104 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTT
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccccc
Confidence 3467789999999999999887766321 3 889999999999999999998874 5899999999988 47
Q ss_pred CCccEEEECcccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 229 RQFQLVMDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
+++|+|+++..+..-.- ..+...-...+++++.++|++ ..+++.+.......
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~ 157 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEK 157 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHH
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH
Confidence 89999999987653210 000112234677889999999 55555555544433
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=7.1e-09 Score=93.02 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=87.6
Q ss_pred cchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc---
Q 019324 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL--- 227 (343)
Q Consensus 154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~--- 227 (343)
.++..+....+.++|||||+++|..+.+++.. + ..+|+.+|.++...+.|+++++..|+ .+|+++.+|+.+.-.
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 44445555577889999999999999999875 2 23899999999999999999999987 579999999876421
Q ss_pred -----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 228 -----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 228 -----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.++||+|+...- ......+++.+.++|+|||++++.
T Consensus 149 ~~~~~~~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred hccccCCcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 258999996432 134456788899999999999884
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.90 E-value=5e-09 Score=100.03 Aligned_cols=98 Identities=27% Similarity=0.271 Sum_probs=80.9
Q ss_pred CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA 242 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~ 242 (343)
+.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.++++++.+.++|+..... .+.||+|+.+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999875 545899999999999999999999998888899999876433 467999987542
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.....++..+.+.+++||+++++
T Consensus 135 --------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12235678878889999999997
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.90 E-value=8.1e-09 Score=100.38 Aligned_cols=103 Identities=19% Similarity=0.353 Sum_probs=77.6
Q ss_pred CCeEEEEccCccHHHHHHHhcC-----CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-----~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
+..|||+|||+|.++...++.+ ..+|++++-++.++...++++..++. .+|+++.+|+++...+.++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE- 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE- 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe-
Confidence 5789999999999988777664 45999999999999998888777776 5899999999999988899999983
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
.+..+..+ +.....|....|.|||||+++=
T Consensus 266 lLGsfg~n----El~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 266 LLGSFGDN----ELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp --BTTBTT----TSHHHHHHHGGGGEEEEEEEES
T ss_pred ccCCcccc----ccCHHHHHHHHhhcCCCCEEeC
Confidence 33333211 1223467889999999998753
No 173
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.90 E-value=5.1e-09 Score=90.77 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=80.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
....+.||.|||.|+++..++..-+.+|-.+|..+..++.|++.+......-.++++..+.++.+ +.+||+|.+.-++.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 34679999999999999988766577999999999999999986654222247889999998877 47999999999998
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
|+. ..+...+|+++.+.|+|+|++++
T Consensus 134 hLT-----D~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLT-----DEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-----HHHHHHHHHHHHHhCcCCcEEEE
Confidence 884 57889999999999999999999
No 174
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.4e-08 Score=98.24 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=86.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~ 238 (343)
.++.++||+-||.|++++.|++. ..+|+|+|+++.+++.|++|++.+++.|+.|..+++.+... ...+|+|+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 46689999999999999999987 45999999999999999999999999999999999988754 24789888754
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
.=..+ -..+++.+. .++|..+++++.-..+....+..+.
T Consensus 371 PR~G~---------~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~~L~ 409 (432)
T COG2265 371 PRAGA---------DREVLKQLA-KLKPKRIVYVSCNPATLARDLAILA 409 (432)
T ss_pred CCCCC---------CHHHHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHH
Confidence 32222 123344444 4478777777654445555555554
No 175
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=2.4e-08 Score=92.96 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=92.1
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccC-CCccEEEECc
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG 238 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~-~~fD~V~~~~ 238 (343)
....+.+|||+.||.|-+++.++..|...|+++|++|.+++.+++|+..|++.+ +..+++|+...... +.+|-|+++-
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 335689999999999999999999987569999999999999999999999865 99999999998765 7899999864
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~ 280 (343)
.- ....++..+.+.+++||++-+........
T Consensus 265 p~-----------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 265 PK-----------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CC-----------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 42 33467899999999999988866555443
No 176
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.88 E-value=2.3e-08 Score=89.86 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=91.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C--CCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCCc----cCCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTK----LERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~~----~~~~fD~V 234 (343)
..+-+||||.||.|+..+..... + ..+|.-.|+|+..|+..++.++..|+.++ +|.++|+.+.. ....++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999988877665 3 24899999999999999999999999876 99999998863 24568999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
+..+.++.+. +.......+..+.++|.|||+++.+.-++
T Consensus 214 iVsGL~ElF~----Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 214 IVSGLYELFP----DNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred EEecchhhCC----cHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 9999998772 23345567899999999999999976333
No 177
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.88 E-value=5.6e-09 Score=90.67 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=73.4
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~ 239 (343)
..++.+|||+.||.|.+++.+++. ..+.|+|+|++|.+++.+++++..+++. ++..+.+|+.+....+.+|-|+++-.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 367899999999999999999984 2348999999999999999999999985 58999999998866788999998654
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEE
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV 271 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~li 271 (343)
-... .+|..+.+++++||++-
T Consensus 179 ~~~~-----------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESSL-----------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSGG-----------GGHHHHHHHEEEEEEEE
T ss_pred HHHH-----------HHHHHHHHHhcCCcEEE
Confidence 3322 46788999999999763
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.3e-07 Score=89.60 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=102.9
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCC---CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cC-CCccE
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LE-RQFQL 233 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~---~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~-~~fD~ 233 (343)
...++.+|||++++.|.=+.++++... ..|+++|.++.-++..++|+...|+.++.....|..... .. .+||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 347889999999999999999888732 246999999999999999999999988888888877543 22 35999
Q ss_pred EEECcccccccc---CCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhcc
Q 019324 234 VMDKGTLDAIGL---HPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRR 293 (343)
Q Consensus 234 V~~~~~l~~i~~---~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~ 293 (343)
|+........+. ||+- . .....+|..+.++|||||.|+.++|....++.-..+..|..+.
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 998765544432 2322 1 1124788999999999999999999998888777776655443
No 179
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.6e-09 Score=85.73 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=69.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
..+++++|+|||.|.++...+..+...|+|+|++|.+++++.+|++...+ ++++.++|+.+..+ .+.||.++.|..+.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 56889999999999999887777777999999999999999999998876 78999999999865 57899999988765
Q ss_pred c
Q 019324 242 A 242 (343)
Q Consensus 242 ~ 242 (343)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 3
No 180
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.85 E-value=1.4e-08 Score=92.12 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=83.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.+++.|||+|||+|.++...++.|+++|++++-| .|.+.|++..+.+.+ .+|.++.+.+.+..++++.|+||+-. +.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEP-MG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEP-MG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEecc-ch
Confidence 5688999999999999999999999999999976 688999999888877 58999999999999999999999853 22
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.+. .....++.+ -.+++.|||.|.++-+
T Consensus 254 ~mL---~NERMLEsY-l~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YML---VNERMLESY-LHARKWLKPNGKMFPT 281 (517)
T ss_pred hhh---hhHHHHHHH-HHHHhhcCCCCcccCc
Confidence 221 111222222 3456999999988764
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.84 E-value=2.4e-08 Score=92.10 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=67.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++...+ ..+++++++|+.+... ..||+|++|..+.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY~ 112 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPYQ 112 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCcc
Confidence 567899999999999999999985 489999999999999999988765 3589999999988654 3689999987764
Q ss_pred c
Q 019324 242 A 242 (343)
Q Consensus 242 ~ 242 (343)
.
T Consensus 113 I 113 (294)
T PTZ00338 113 I 113 (294)
T ss_pred c
Confidence 3
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.83 E-value=1.4e-08 Score=92.99 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=63.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC-ccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~-fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.. ++++++++|+.+.+++.. ++.|++|..+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence 4678999999999999999999965 899999999999999987642 489999999998865432 58899887653
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.83 E-value=4.2e-08 Score=91.20 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=60.8
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc-CCC-ceEEEE-ccCCCCc-----cCCCccEE
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLV-DDVLDTK-----LERQFQLV 234 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~-~~~-~i~~~~-~D~~~~~-----~~~~fD~V 234 (343)
++.+|||||||+|.+...++.. ...+++|+|+++.+++.|+++++.+ ++. ++.+.. .|..... ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999887777665 2238999999999999999999998 664 677754 3332211 24689999
Q ss_pred EECccccc
Q 019324 235 MDKGTLDA 242 (343)
Q Consensus 235 ~~~~~l~~ 242 (343)
+||..+..
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99998754
No 184
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.83 E-value=4.2e-08 Score=91.62 Aligned_cols=160 Identities=18% Similarity=0.264 Sum_probs=97.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--------CCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCcc---CC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL---ER 229 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--------g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~---~~ 229 (343)
.++.+|||.+||+|.++..+.+. ....++|+|+++.++..|+.++...+.. +..+..+|...... ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 45678999999999999888762 2348999999999999999988776652 35688999776543 36
Q ss_pred CccEEEECcccccccc-----C---------CCChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHHHhhhhcc
Q 019324 230 QFQLVMDKGTLDAIGL-----H---------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEVSNLSQRR 293 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~-----~---------~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~~~~~~~~ 293 (343)
.||+|+++.++..... . ......-..++..+.+.|++||++.+..+.... ......++++-...
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN 204 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence 8999999987754411 0 011122245889999999999998887664321 11112222221111
Q ss_pred ccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEeeC
Q 019324 294 IGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343 (343)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~ 343 (343)
. .+..+-.+|.-.|.+ .+..++.+.|.|+
T Consensus 205 -------------------~-~i~aVI~Lp~~~F~~-t~v~t~ilil~k~ 233 (311)
T PF02384_consen 205 -------------------G-YIEAVISLPSNLFKP-TGVPTSILILNKK 233 (311)
T ss_dssp -------------------E-EEEEEEE--TTSSSS-SSS-EEEEEEEES
T ss_pred -------------------c-hhhEEeecccceecc-cCcCceEEEEeec
Confidence 1 133333456666776 6677777777663
No 185
>PLN02823 spermine synthase
Probab=98.81 E-value=2.6e-08 Score=93.33 Aligned_cols=111 Identities=14% Similarity=0.307 Sum_probs=82.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCCCccEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~~fD~V~ 235 (343)
..+++||.||+|.|..+..+++. +..+|+.+|+++.+++.|++.+...+ .++++++.+|....- ..++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999998886 45589999999999999999875432 258999999988753 256899999
Q ss_pred ECccccccccCCCChhhHHHHHH-HHhhccCCCcEEEEEe
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWD-SVSKLVAPGGLLVITS 274 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~-~~~~~LkpgG~lii~~ 274 (343)
.... +-....+....-...+++ .+.+.|+|||++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8631 211000111112345777 8999999999998854
No 186
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.80 E-value=2.6e-08 Score=91.16 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=79.5
Q ss_pred CCeEEEEccCccH----HHHHHHhc-C----CCcEEEEeCChHHHHHHHHHH------------------HH-----cC-
Q 019324 165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLA------------------NR-----DG- 211 (343)
Q Consensus 165 ~~~VLDiGcG~G~----~~~~la~~-g----~~~v~gvD~s~~~i~~a~~~~------------------~~-----~~- 211 (343)
..+|+..||++|. +++.+.+. + .-+|+|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999994 44555443 1 127999999999999998741 00 01
Q ss_pred ------C-CceEEEEccCCCCcc--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 212 ------F-SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 212 ------~-~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+ ..|.|.+.|+.+.+. .+.||+|+|.+++-++. .....++++.+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-----~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-----KTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1 258999999988542 57899999999987662 3566788999999999999988754
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.79 E-value=2.4e-08 Score=90.70 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=64.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++.. .++++++++|+.+.+.+ .||.|++|-++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy~ 102 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP-EFNKVVSNLPYQ 102 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-hceEEEEcCCcc
Confidence 467899999999999999999985 4899999999999999988754 25899999999987654 589999987764
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.77 E-value=9.3e-08 Score=87.83 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CC---CccEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ER---QFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~---~fD~V~ 235 (343)
.++..+||.+||.|..+..+++.. ..+|+|+|.++.|++.+++++.. ..++.++++|+.++.. .. ++|.|+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 567799999999999999999883 34899999999999999998765 3589999999887642 22 799998
Q ss_pred EC
Q 019324 236 DK 237 (343)
Q Consensus 236 ~~ 237 (343)
..
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 75
No 189
>PRK04148 hypothetical protein; Provisional
Probab=98.76 E-value=1.8e-07 Score=75.52 Aligned_cols=67 Identities=24% Similarity=0.469 Sum_probs=57.6
Q ss_pred CCCeEEEEccCccH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECc
Q 019324 164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG 238 (343)
Q Consensus 164 ~~~~VLDiGcG~G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~ 238 (343)
++.+|||||||.|. ++..|++.|+ +|+|+|+++.+++.++++ .++++++|+.+..+ -+.+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 45789999999995 8989998886 999999999999999874 46899999998765 37899999853
No 190
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.75 E-value=5.9e-08 Score=83.71 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=82.4
Q ss_pred eEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCCcc---------CCCccEEE
Q 019324 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL---------ERQFQLVM 235 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~~~---------~~~fD~V~ 235 (343)
+|||||||||..+.+++.+ +.-.-.-.|+++......+......+++|+ .-+..|+..... .++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999987 333678899999998888887777776653 335667766521 35899999
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+.+++|... ......+++.+.++|++||.|++-.+
T Consensus 108 ~~N~lHI~p-----~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 108 CINMLHISP-----WSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ehhHHHhcC-----HHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 999987653 46677899999999999999999654
No 191
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.73 E-value=1.3e-08 Score=90.06 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=88.2
Q ss_pred cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
++++..|||+|.|||+++..|++.|. +|+|+++++.|+....++...... ..++++.+|+.+.+.+ .||++++|-.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-~fd~cVsNlPy 133 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-RFDGCVSNLPY 133 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-ccceeeccCCc
Confidence 37899999999999999999999975 899999999999999998876543 2699999999997654 79999987543
Q ss_pred ccc-------ccCCCChhhHHHHHH-H-H-hhccCCCcEEEE-EecCCChHHHHHHHHhhhhccccc
Q 019324 241 DAI-------GLHPDGPLKRIMYWD-S-V-SKLVAPGGLLVI-TSCNSTKDELVHEVSNLSQRRIGV 296 (343)
Q Consensus 241 ~~i-------~~~~~~~~~~~~~l~-~-~-~~~LkpgG~lii-~~~~~~~~~~~~~~~~~~~~~~~~ 296 (343)
..- ..|.+-+.....+++ + + .-+-+||-.+++ .+.+.+...-+..+.++.+..+..
T Consensus 134 qISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~KVgknnFrP 200 (315)
T KOG0820|consen 134 QISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMKVGKNNFRP 200 (315)
T ss_pred cccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhheeecccccCC
Confidence 221 112221111111111 1 1 224467777776 334444444444454555544433
No 192
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.71 E-value=7.3e-08 Score=87.21 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=81.5
Q ss_pred CCCeEEEEccCcc----HHHHHHHhcC-----C-CcEEEEeCChHHHHHHHHHH-----H--------------H--cC-
Q 019324 164 SSWSVLDIGTGNG----LLLQELSKQG-----F-SDLTGVDYSEDAINLAQSLA-----N--------------R--DG- 211 (343)
Q Consensus 164 ~~~~VLDiGcG~G----~~~~~la~~g-----~-~~v~gvD~s~~~i~~a~~~~-----~--------------~--~~- 211 (343)
...+|+-+||++| .+++.|.+.+ . -+|+|+|+|..+++.|+.-. . . .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3779999999999 4555555542 1 28999999999999997521 0 0 01
Q ss_pred ------C-CceEEEEccCCCCc-cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 212 ------F-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 212 ------~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+ ..|.|...|+.... ..+.||+|+|.+++-++. ......+++.++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-----~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-----EETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-----HHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1 25889999999887 678899999999997772 2455678899999999999999953
No 193
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.70 E-value=5.1e-08 Score=92.71 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTL 240 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l 240 (343)
+.+|||+.||+|..++.++.+ |..+|+++|+++.+++.+++|++.++..++.+++.|+..... ...||+|.... +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 358999999999999999987 667999999999999999999999988789999999887632 35799998754 2
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
. ....+++.+.+.+++||+++++
T Consensus 124 G----------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G----------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C----------CcHHHHHHHHHhcccCCEEEEE
Confidence 1 2235789999999999999997
No 194
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.69 E-value=1.4e-07 Score=89.47 Aligned_cols=58 Identities=29% Similarity=0.436 Sum_probs=48.1
Q ss_pred CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC
Q 019324 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~ 224 (343)
.+|||+.||+|.++..|+... .+|+|+|+++.+++.|++|+..+++.|++|+.+++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 389999999999999999984 5999999999999999999999999999999887654
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.67 E-value=1.9e-07 Score=84.57 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=62.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCcc---EEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ---LVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD---~V~~~~~ 239 (343)
.++.+|||||||+|.++..+++.+. .|+++|+++.+++.++++... .++++++.+|+...+.. .+| +|++|-.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence 4578999999999999999999964 799999999999999987743 25899999999987654 466 7887755
Q ss_pred c
Q 019324 240 L 240 (343)
Q Consensus 240 l 240 (343)
+
T Consensus 104 y 104 (253)
T TIGR00755 104 Y 104 (253)
T ss_pred h
Confidence 4
No 196
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.65 E-value=1.3e-07 Score=85.19 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=80.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCC-CccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LER-QFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~-~fD~V 234 (343)
..+++||-||-|.|..+..+.++. ..++++||+++.+++.|++.+.... -++++++.+|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 458899999999999999999884 4589999999999999999765432 258999999987753 234 89999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+....- -. .+....-...+++.+.++|+|||++++..
T Consensus 155 i~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 975332 11 11111223578899999999999999854
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-07 Score=81.33 Aligned_cols=113 Identities=17% Similarity=0.296 Sum_probs=85.3
Q ss_pred cccccchhhhh-ccCCCCeEEEEccCccHHHHHHHhc-CCC--cEEEEeCChHHHHHHHHHHHHcC----------CCce
Q 019324 150 DLKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GFS--DLTGVDYSEDAINLAQSLANRDG----------FSCI 215 (343)
Q Consensus 150 ~~~~~~~~~l~-~~~~~~~VLDiGcG~G~~~~~la~~-g~~--~v~gvD~s~~~i~~a~~~~~~~~----------~~~i 215 (343)
++...+++.|. .+.++.+.||+|.|+|.++..++.. |.. ..+|||.-+..++.+++++...- ..++
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 34444444444 3478999999999999998888754 322 45999999999999999886543 1258
Q ss_pred EEEEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 216 KFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 216 ~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
.++++|...... ..+||.|.+.....-+ .+++...|+|||.+++-..
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGAaa~~~-------------pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGAAASEL-------------PQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEEeCCccccCCccCCcceEEEccCcccc-------------HHHHHHhhccCCeEEEeec
Confidence 899999998754 5799999997544322 3788889999999998644
No 198
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.63 E-value=2.6e-07 Score=76.25 Aligned_cols=106 Identities=24% Similarity=0.359 Sum_probs=87.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCC--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD~V 234 (343)
..+..|||+|.|+|.++..++.+|.. .++++++|+..+....+.. +.++++.+|+.++. ....||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence 56789999999999999999999743 8999999999999998876 46778999988765 25789999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
+|.-.+-.+. .....++++.+...|.+||.++..+..+.
T Consensus 122 iS~lPll~~P-----~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 122 ISGLPLLNFP-----MHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred EeccccccCc-----HHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 9965554442 35667899999999999999998766643
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.63 E-value=2.1e-07 Score=84.97 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=85.4
Q ss_pred CCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCcc--CCCccEEEEC
Q 019324 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTKL--ERQFQLVMDK 237 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~~--~~~fD~V~~~ 237 (343)
+++||-||-|.|..+..++++. ..+++.||+++..++.+++.+.... .++++++..|..++-. ..+||+|+..
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999984 4699999999999999999876554 4689999999887642 4589999986
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
.+=. . .|-...-...+++.+.++|+++|+++..+
T Consensus 157 ~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4422 2 22222334578899999999999999973
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.62 E-value=4.2e-07 Score=77.98 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=84.9
Q ss_pred eEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccccccc
Q 019324 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL 245 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~ 245 (343)
+++|||+|.|.-++.++-. +..+++.+|....-+...+......+++|+++++..+.+......||+|++.++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 8999999999888887765 3348999999999999999999999999999999999984457899999998764
Q ss_pred CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 246 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
....+++-+...|++||.+++.-.....+++..
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~ 158 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEE 158 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHT
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHH
Confidence 233567888999999999999876655555443
No 201
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.59 E-value=2.9e-07 Score=81.66 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=59.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHH-HHHHHHHcCCCce-EEEEccCCCCcc-C-----CCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-AQSLANRDGFSCI-KFLVDDVLDTKL-E-----RQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~-a~~~~~~~~~~~i-~~~~~D~~~~~~-~-----~~fD~V 234 (343)
.++.+|||+|||+|.++..+++.|..+|+|+|+++.++.. .+++ +++ .+...|+..... + ..+|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHcCCCceeeeEE
Confidence 4577999999999999999999987799999999988775 3322 122 233344443221 1 234544
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+.. ...++..+.++|+| |.+++.
T Consensus 148 fiS---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 148 FIS---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred Eee---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 432 12356899999999 766654
No 202
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.59 E-value=7.5e-08 Score=80.54 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=71.9
Q ss_pred eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccC----CCccEEEECcccc
Q 019324 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE----RQFQLVMDKGTLD 241 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~----~~fD~V~~~~~l~ 241 (343)
.|+|+.||.|..++.+++. +.+|+++|+++..++.|+.|++..|+ .+|+++++|+.+.... ..+|+|++..+-.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 6999999999999999999 45899999999999999999999997 5899999999876421 1289999864322
Q ss_pred ---cc-----cc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324 242 ---AI-----GL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285 (343)
Q Consensus 242 ---~i-----~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~ 285 (343)
+. .+ ....+.....+++.+.++ .+. ++++...+....++.+.
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~n-v~l~LPRn~dl~ql~~~ 131 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPN-VVLFLPRNSDLNQLSQL 131 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S--EEEEEETTB-HHHHHHT
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhh-CCC-EEEEeCCCCCHHHHHHH
Confidence 11 11 111222344555554444 333 44555556666666443
No 203
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.57 E-value=1.6e-07 Score=80.78 Aligned_cols=101 Identities=15% Similarity=0.263 Sum_probs=63.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.++..|.|+|||.+.++..+.. +. .|..+|+-.. +-.+..+|+...++ +++.|++++.-.|.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh
Confidence 4567999999999999977643 33 7999998532 33478899998886 68999999754443
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh---HHHHHHHHh
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK---DELVHEVSN 288 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~---~~~~~~~~~ 288 (343)
. .+...++.++.|+|||||.|.|....... ....+.+..
T Consensus 134 G--------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 134 G--------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKK 175 (219)
T ss_dssp S--------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHC
T ss_pred C--------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHH
Confidence 2 35667899999999999999997655433 444444443
No 204
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.56 E-value=8.2e-08 Score=83.29 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=87.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCc---cCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTK---LERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~---~~~~fD~V~~~ 237 (343)
.++.+|||.+.|-|..++..+++|+..|+.++.+++.++.|+-|-=..++ .+++++.+|+.+.- .+.+||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 56899999999999999999999988999999999999999876433333 25899999987753 26789999965
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
..--.+ .+....+.+.++++|+|||||.++--+.++.
T Consensus 213 PPRfS~----AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 213 PPRFSL----AGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred CCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 432111 1234556788999999999999998766654
No 205
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=4.6e-08 Score=84.53 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
+....++|||||.|.+...+...+..+++-+|-|-.|++.++..- ..++ .+..+++|-..+++ ++++|+|++.-.++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 345689999999999999999998889999999999999998632 2232 46677888777765 68999999998888
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHH
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVH 284 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~ 284 (343)
++. +.-..+.++...|||+|.++-+-... +..++.-
T Consensus 149 W~N-------dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 149 WTN-------DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hhc-------cCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 873 44456688999999999998754433 3444433
No 206
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.54 E-value=6.9e-07 Score=88.70 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=88.3
Q ss_pred CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT 239 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~ 239 (343)
....+||||||.|.++..+|.. +...++|+|+....+..+.+.....++.|+.+++.|+.... .++++|.|+.+++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4678999999999999999987 44489999999999999988888888889999988875332 3578998888655
Q ss_pred cccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 240 LDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 240 l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
=-+.-- |.....--..+++.+.++|||||.+.+.+-+...
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 333210 1111222247889999999999999998766543
No 207
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.53 E-value=4e-07 Score=83.75 Aligned_cols=129 Identities=20% Similarity=0.247 Sum_probs=99.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~ 237 (343)
.++.+|||+++|.|.-+..+++. +...++++|+++.-+...+.++...|+.++.....|..... ....||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 67889999999999999888886 23489999999999999999999999989999888887763 24469999986
Q ss_pred cccccc---ccCCCCh------------hhHHHHHHHHhhcc----CCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324 238 GTLDAI---GLHPDGP------------LKRIMYWDSVSKLV----APGGLLVITSCNSTKDELVHEVSNLSQ 291 (343)
Q Consensus 238 ~~l~~i---~~~~~~~------------~~~~~~l~~~~~~L----kpgG~lii~~~~~~~~~~~~~~~~~~~ 291 (343)
...... .-+|+.. .....+|+++.+.+ ||||+++.++|.-..++.-..++.|-.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~ 236 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLK 236 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 544333 2233210 11247889999999 999999999998887776666665543
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.2e-06 Score=82.23 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=86.0
Q ss_pred hccCCCCeEEEEccCccHHHHHHHhcCC------C----------------------------------cEEEEeCChHH
Q 019324 160 DKYLSSWSVLDIGTGNGLLLQELSKQGF------S----------------------------------DLTGVDYSEDA 199 (343)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~------~----------------------------------~v~gvD~s~~~ 199 (343)
.+..++..++|.-||+|.+++..+..+. . .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 3446667999999999999998887642 1 27799999999
Q ss_pred HHHHHHHHHHcCCC-ceEEEEccCCCCccC-CCccEEEECccccccccCCCC-hh-hHHHHHHHHhhccCCCcEEEEEec
Q 019324 200 INLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDG-PL-KRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 200 i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~-~~fD~V~~~~~l~~i~~~~~~-~~-~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++.|+.|+...|+. .|+|.++|+..+..+ +.+|+||||.+..-= +.... .. ....+.+.+.+.++-.+.+++++.
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 99999999999984 699999999998765 899999999876422 11111 11 122444556677777778877654
No 209
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.50 E-value=8.7e-07 Score=78.09 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
..+..|.|+|||.+.++. .. ...|+.+|+-+. +-+++.+|+.+.++ +++.|++++.-.+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL- 238 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL- 238 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh-
Confidence 457799999999998876 22 348999998422 56789999999886 7899999874333
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
++ .+...++.+++|+|++||.++|.........
T Consensus 239 -Mg------tn~~df~kEa~RiLk~gG~l~IAEv~SRf~d 271 (325)
T KOG3045|consen 239 -MG------TNLADFIKEANRILKPGGLLYIAEVKSRFSD 271 (325)
T ss_pred -hc------ccHHHHHHHHHHHhccCceEEEEehhhhccc
Confidence 32 4566789999999999999999776654433
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.3e-07 Score=81.42 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC--CccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--QFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~--~fD~V~~~~~l 240 (343)
.++..|||||+|.|.++..|++.+. .|+++++++.++...++..... .+++++.+|+.+.+++. .++.|++|-.+
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY--DNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc--cceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 4578999999999999999999975 8999999999999999987632 48999999999998765 78999998766
Q ss_pred cc
Q 019324 241 DA 242 (343)
Q Consensus 241 ~~ 242 (343)
..
T Consensus 106 ~I 107 (259)
T COG0030 106 NI 107 (259)
T ss_pred cc
Confidence 43
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.47 E-value=3.1e-07 Score=78.84 Aligned_cols=113 Identities=24% Similarity=0.355 Sum_probs=70.7
Q ss_pred CCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cC---CC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LE---RQ 230 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~---~~ 230 (343)
++.+|||+||++|.++..+++++ ...|+|+|+.+. ...+++.++++|+.+.. .. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999996 459999999877 12246777777765531 11 58
Q ss_pred ccEEEECccccccccCC-CC---hhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324 231 FQLVMDKGTLDAIGLHP-DG---PLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS 287 (343)
Q Consensus 231 fD~V~~~~~l~~i~~~~-~~---~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~ 287 (343)
+|+|++......-.... +. .......+.-+.+.|+|||.+++-.... ....+...+.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~ 153 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLK 153 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHH
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHH
Confidence 99999987433221100 01 1222344455678899999988855443 3346666665
No 212
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=2.9e-07 Score=82.47 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=79.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCCcc-CCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL-ERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~~~-~~~fD~V~~~~~l 240 (343)
..+..+||+|||+|..+..- +...++|+|++...+..+++ .+. ....+|+...+. +.+||.+++..++
T Consensus 44 ~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~-------~~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKR-------SGGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccccc-------CCCceeehhhhhcCCCCCCccccchhhhhh
Confidence 44789999999999765322 22379999999999998886 244 688899999876 6899999999999
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+|+. ....+...++++.++|+|||..++...
T Consensus 114 hhls----T~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 114 HHLS----TRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9883 456677899999999999999877544
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.46 E-value=1.6e-06 Score=78.38 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH----cCCCceEEEEccCCCCccCCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTKLERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~----~~~~~i~~~~~D~~~~~~~~~fD~V~~~~ 238 (343)
..+++||-||.|.|..+..++++. .+|+.||+++.+++.+++.+.. ...++++++.. +.+ ...++||+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 567999999999999999999996 4999999999999999994433 22257777652 221 1236899999864
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
++. ..+.+.+.+.|+|||+++....
T Consensus 148 ~~~------------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 148 EPD------------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCC------------hHHHHHHHHhcCCCcEEEECCC
Confidence 321 2466899999999999999543
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.45 E-value=1.6e-06 Score=89.41 Aligned_cols=113 Identities=26% Similarity=0.225 Sum_probs=82.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc------C-------------------------------------CCcEEEEeCChHH
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ------G-------------------------------------FSDLTGVDYSEDA 199 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~------g-------------------------------------~~~v~gvD~s~~~ 199 (343)
.++..++|.+||+|.+++..+.. | ...++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999999887652 0 0159999999999
Q ss_pred HHHHHHHHHHcCCC-ceEEEEccCCCCcc---CCCccEEEECccccccccCCCChhhHHHHHHHH---hhccCCCcEEEE
Q 019324 200 INLAQSLANRDGFS-CIKFLVDDVLDTKL---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSV---SKLVAPGGLLVI 272 (343)
Q Consensus 200 i~~a~~~~~~~~~~-~i~~~~~D~~~~~~---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~---~~~LkpgG~lii 272 (343)
++.|++|+...|+. .+.+.++|+.+... .++||+|++|..+..-. ....+...+...+ .+...+|+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~---~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL---GEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCcc---CchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999999999985 58999999988754 24699999998764321 1112333333443 444448999888
Q ss_pred EecCCC
Q 019324 273 TSCNST 278 (343)
Q Consensus 273 ~~~~~~ 278 (343)
.+....
T Consensus 346 lt~~~~ 351 (702)
T PRK11783 346 FSSSPE 351 (702)
T ss_pred EeCCHH
Confidence 776553
No 215
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.4e-07 Score=88.02 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=71.6
Q ss_pred hhhccccCcccCccccccccchhhhh---ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 019324 135 LCISISQGHMLNHVEDLKSEPVEEND---KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211 (343)
Q Consensus 135 ~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~ 211 (343)
+...+.++..+......-+.+-..+. .+..+..+||+.||||.++..+++. ...|+|+++++.++..|++|+..+|
T Consensus 351 ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187|consen 351 LTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred eEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcC
Confidence 33455566666666665555555543 3366789999999999999999987 6799999999999999999999999
Q ss_pred CCceEEEEccCCCC
Q 019324 212 FSCIKFLVDDVLDT 225 (343)
Q Consensus 212 ~~~i~~~~~D~~~~ 225 (343)
++|++|+++-+.+.
T Consensus 430 isNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 430 ISNATFIVGQAEDL 443 (534)
T ss_pred ccceeeeecchhhc
Confidence 99999999955543
No 216
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.40 E-value=4e-07 Score=78.35 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccC-----CCccEEEEC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-----RQFQLVMDK 237 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~-----~~fD~V~~~ 237 (343)
....|+|..||.|..++..+.++. .|+++|++|.-|..|+.|++-.|++ +|+|+++|+.+.... ..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 356899999999999999999875 8999999999999999999999995 799999999876321 235566655
Q ss_pred c
Q 019324 238 G 238 (343)
Q Consensus 238 ~ 238 (343)
+
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 4
No 217
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.39 E-value=1.6e-06 Score=78.51 Aligned_cols=103 Identities=24% Similarity=0.335 Sum_probs=77.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH---cC----------------------------
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR---DG---------------------------- 211 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~---~~---------------------------- 211 (343)
..+.+||-.|||.|+++..++..|+ .+.|.|+|--|+-...-.+.. .+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4467999999999999999999998 899999999997655442221 00
Q ss_pred ---------CCceEEEEccCCCCcc-C---CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 212 ---------FSCIKFLVDDVLDTKL-E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 212 ---------~~~i~~~~~D~~~~~~-~---~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
..++....+|+.+.-. + ++||+|+...-+|. ......+++.|.++|||||+.+=.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT-------A~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT-------AENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec-------hHHHHHHHHHHHHHhccCCEEEec
Confidence 0246666777776543 2 58999998755544 377889999999999999966543
No 218
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=1.4e-06 Score=73.87 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=81.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
..+++|||+|+|+|..++..+..|...|++.|+.|..+...+-|.+.+++ ++.+...|+.. .+..||+++...++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEEEeeceecC
Confidence 55889999999999999999999988999999999999999999999997 89999999887 4568999998776532
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEE-EecCC
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVI-TSCNS 277 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii-~~~~~ 277 (343)
= ....+++. ....|+..|..++ -++.+
T Consensus 155 ~-------~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 155 H-------TEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred c-------hHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 1 23345556 5555555555444 44444
No 219
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=2.5e-06 Score=85.44 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCeEEEEccCccHHHHHHHhcC--------C-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQG--------F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g--------~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~ 228 (343)
...+|||.|||+|.++..++... . ..++|+|+++.++..++.++...+.-.+.+.+.|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 45699999999999999887641 1 368999999999999999887765224555655544321 13
Q ss_pred CCccEEEECccccccccCCC--------------------------------------C-hhhHHH-HHHHHhhccCCCc
Q 019324 229 RQFQLVMDKGTLDAIGLHPD--------------------------------------G-PLKRIM-YWDSVSKLVAPGG 268 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~~~~~--------------------------------------~-~~~~~~-~l~~~~~~LkpgG 268 (343)
+.||+|+.|.++..+..... + ...... +++.+.++|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 58999999988754421100 0 001112 3467899999999
Q ss_pred EEEEEecCC
Q 019324 269 LLVITSCNS 277 (343)
Q Consensus 269 ~lii~~~~~ 277 (343)
++.+..+..
T Consensus 191 ~~~~I~P~s 199 (524)
T TIGR02987 191 YVSIISPAS 199 (524)
T ss_pred EEEEEEChH
Confidence 999987754
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.33 E-value=2.4e-06 Score=74.62 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=64.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHH-------HHcCC--CceEEEEccCCCCcc----C
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKL----E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~-------~~~~~--~~i~~~~~D~~~~~~----~ 228 (343)
.++...+|||||.|+.....+.. ++.+.+||++.+...+.|+... ...|. .++++..+|+.+.+. -
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 56889999999999998777654 7767999999999888876533 23333 368889999887542 1
Q ss_pred CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
...|+|++|+.. + ..+....+.++...||+|-+++.
T Consensus 121 s~AdvVf~Nn~~--F------~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTC--F------DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TT--T-------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEeccc--c------CHHHHHHHHHHHhcCCCCCEEEE
Confidence 357999998764 2 13444555777788899987765
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=4.3e-06 Score=72.79 Aligned_cols=108 Identities=17% Similarity=0.291 Sum_probs=83.6
Q ss_pred hhhhhccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc------
Q 019324 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK------ 226 (343)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~------ 226 (343)
+.++-+...++++||||.=||..+..+|.. .-.+|+++|+++...+.+.+..+..|+. +|++++++..+.-
T Consensus 65 l~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~ 144 (237)
T KOG1663|consen 65 LQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD 144 (237)
T ss_pred HHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc
Confidence 344445577899999999888877777665 2238999999999999999988888874 7999999887642
Q ss_pred -cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 227 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 227 -~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
..+.||+++.. .++... ..+++++.++||+||++++.
T Consensus 145 ~~~~tfDfaFvD---------adK~nY-~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 145 GESGTFDFAFVD---------ADKDNY-SNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCCceeEEEEc---------cchHHH-HHHHHHHHhhcccccEEEEe
Confidence 14688888852 233233 37889999999999999994
No 222
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.30 E-value=1.4e-06 Score=78.36 Aligned_cols=112 Identities=20% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC----------------------------Cc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----------------------------SC 214 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~----------------------------~~ 214 (343)
.++.++||||||.-......+..-+.+|+..|+++..++..++.+...+. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 45779999999996554333333456899999999999988876543220 01
Q ss_pred e-EEEEccCCCCcc-------CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 215 I-KFLVDDVLDTKL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 215 i-~~~~~D~~~~~~-------~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
| .++.+|+++..+ +.+||+|++..+++.+. .........++++.++|||||.|++...-.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~---~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC---KDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc---CCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 3 477889988653 23599999999998884 334566788899999999999999975433
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=3.7e-06 Score=73.57 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC-ccEEEECccccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDA 242 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~-fD~V~~~~~l~~ 242 (343)
+.+++|||+|.|.-++.|+-. +..+|+-+|....-+...++.....+++|++++++.+.+...... ||+|++.++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 689999999999998888733 333799999999999999999999999999999999999865444 9999998653
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 281 (343)
....+.+-+..++|+||.+++.-.....++
T Consensus 146 ---------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e 175 (215)
T COG0357 146 ---------SLNVLLELCLPLLKVGGGFLAYKGLAGKDE 175 (215)
T ss_pred ---------chHHHHHHHHHhcccCCcchhhhHHhhhhh
Confidence 233556778889999998876544443333
No 224
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.26 E-value=2e-06 Score=81.28 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=89.0
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECc
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
...+..+++|+|||.|.....++..+...++|+|+++..+..+........+. +..+..+|+.+.++ ++.||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 44556689999999999999999886569999999999998888776665553 46678889888865 78999999988
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+..|. .....++++++++++|||.++...
T Consensus 187 ~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 187 VVCHA-------PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ecccC-------CcHHHHHHHHhcccCCCceEEeHH
Confidence 88777 466778899999999999998853
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1e-05 Score=70.01 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=80.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQF 231 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~f 231 (343)
.++.+|+||||-.|.++..+++. +. ..|+|+|+.|-. ..+++.++++|++.... ...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 66899999999999999999988 32 259999997641 22579999999998642 2346
Q ss_pred cEEEECcccccccc----CCCChhhHHHHHHHHhhccCCCcEEEEEe-cCCChHHHHHHHHh
Q 019324 232 QLVMDKGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEVSN 288 (343)
Q Consensus 232 D~V~~~~~l~~i~~----~~~~~~~~~~~l~~~~~~LkpgG~lii~~-~~~~~~~~~~~~~~ 288 (343)
|+|++...-..-.. |..........++-+..+|+|||.+++-. .....+.++..+++
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 99998643311111 11112223455677788999999999954 45566777777763
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.23 E-value=1.6e-06 Score=72.86 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=82.1
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~ 244 (343)
...+.|+|+|+|.++...++. +.+|++++.+|.-.+.|++|+...|..|++++.+|+....+ ...|+|+|-. ++...
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm-lDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM-LDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHH-hhHHh
Confidence 468999999999999999887 66999999999999999999988888899999999999877 5789999842 33221
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
+ .+....+++.+.+.||-++.++-
T Consensus 110 i----~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 I----EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred h----cccccHHHHHHHHHhhcCCcccc
Confidence 1 12334567888889999988764
No 227
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=74.63 Aligned_cols=140 Identities=23% Similarity=0.276 Sum_probs=98.5
Q ss_pred HHHhhhhhccccCcccCcccc---ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHH
Q 019324 130 SWTKSLCISISQGHMLNHVED---LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQS 205 (343)
Q Consensus 130 ~w~~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~ 205 (343)
+|-+.+...++-+.-+.+.++ ++.++...++....-.+||-+|.|.|.-+..+.+.+ ..+++-+|++|.|++.+++
T Consensus 252 r~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~ 331 (508)
T COG4262 252 RRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASH 331 (508)
T ss_pred EecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhh
Confidence 344444444444555555554 455555556666777899999999999999999985 6799999999999999995
Q ss_pred HHHH--cC-----CCceEEEEccCCCCcc--CCCccEEEECccccccccCCCCh----hhHHHHHHHHhhccCCCcEEEE
Q 019324 206 LANR--DG-----FSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 206 ~~~~--~~-----~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~----~~~~~~l~~~~~~LkpgG~lii 272 (343)
+... .+ .++++++..|+.++-. .+.||+||..- . +|..+ ..-..+...+.+.|+++|++++
T Consensus 332 ~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl----~--DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 332 ATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL----P--DPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred hhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC----C--CCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 4321 11 1579999999988743 46899998632 1 23322 2224677888999999999999
Q ss_pred Eec
Q 019324 273 TSC 275 (343)
Q Consensus 273 ~~~ 275 (343)
...
T Consensus 406 Qag 408 (508)
T COG4262 406 QAG 408 (508)
T ss_pred ecC
Confidence 543
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.21 E-value=3.1e-05 Score=72.16 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=77.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhc----C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEE--EEccCCCCc-------cC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF--LVDDVLDTK-------LE 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~----g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~--~~~D~~~~~-------~~ 228 (343)
.++..|+|+|||+|.-+..|++. + ...++++|+|..+++.+.+++.....+.+.+ +++|..+.. ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 44668999999999866655443 2 2379999999999999999887444455544 888876531 12
Q ss_pred CCccEEEECc-cccccccCCCChhhHHHHHHHHhh-ccCCCcEEEEEe
Q 019324 229 RQFQLVMDKG-TLDAIGLHPDGPLKRIMYWDSVSK-LVAPGGLLVITS 274 (343)
Q Consensus 229 ~~fD~V~~~~-~l~~i~~~~~~~~~~~~~l~~~~~-~LkpgG~lii~~ 274 (343)
....+++..+ ++.. ..+.....+|+++.+ .|+|||.+++..
T Consensus 155 ~~~r~~~flGSsiGN-----f~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGN-----FSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccC-----CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3456777654 4433 345778899999999 999999999853
No 229
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.21 E-value=2e-05 Score=63.97 Aligned_cols=102 Identities=31% Similarity=0.483 Sum_probs=70.7
Q ss_pred EEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC--CccC--CCccEEEECcccc
Q 019324 168 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE--RQFQLVMDKGTLD 241 (343)
Q Consensus 168 VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~--~~~~--~~fD~V~~~~~l~ 241 (343)
++|+|||+|... .+..... ..++|+|+++.++..++......+...+.+...|... .+.. ..||++......+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 3333321 2799999999999996655433211116888888776 4444 3799994433333
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
+. . ....+.++.+.|+|+|.+++......
T Consensus 131 ~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LL-------P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cC-------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 32 1 45678999999999999999766554
No 230
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.20 E-value=1.1e-06 Score=84.72 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEE-----eCChHHHHHHHHHHHHcCCCceEEEEcc--CCCCc-cCCCccEEEE
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGV-----DYSEDAINLAQSLANRDGFSCIKFLVDD--VLDTK-LERQFQLVMD 236 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gv-----D~s~~~i~~a~~~~~~~~~~~i~~~~~D--~~~~~-~~~~fD~V~~ 236 (343)
-..+||+|||+|.++..|.+++. +.+ |..+..++.|.++ |++ .+.+- -..++ +++.||+|.|
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleR----Gvp---a~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALER----GVP---AMIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred eEEEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhc----Ccc---hhhhhhccccccCCccchhhhhc
Confidence 35889999999999999999853 333 4444566666543 332 22222 12334 3789999999
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
..++... ++.+ ..+|-++-|+|+|||+++.+.+..
T Consensus 188 src~i~W--~~~~----g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 188 SRCLIPW--HPND----GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccccccc--hhcc----cceeehhhhhhccCceEEecCCcc
Confidence 8876332 3332 247789999999999999987653
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.19 E-value=2.6e-05 Score=68.15 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=79.2
Q ss_pred EEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECccccccc
Q 019324 168 VLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 168 VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~i~ 244 (343)
|+||||-.|.+...|++.|.. +++++|+++..++.|+++....++ .++++..+|..+.- ..+..|+|+..|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC-----
Confidence 689999999999999999754 899999999999999999999987 47999999976643 3333788876442
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL 289 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~ 289 (343)
+......++++....++....|++ .|+.....+.+.+...
T Consensus 76 ----GG~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~~ 115 (205)
T PF04816_consen 76 ----GGELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYEN 115 (205)
T ss_dssp -----HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHHT
T ss_pred ----CHHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHHC
Confidence 123455677888777776666655 4667777787777643
No 232
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=74.29 Aligned_cols=103 Identities=15% Similarity=0.257 Sum_probs=84.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
..-...+|+|.|.|+.+..+... +..|-+++++...+..++..+. . .|+.+-+|..+..+ +-|+|+...++++
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDTP--KGDAIWMKWILHD 248 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C---CcceecccccccCC--CcCeEEEEeeccc
Confidence 34578999999999999999985 6689999999888888877664 3 47888899888733 4569999888776
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
. ..++..++|+++++.|+|||.+++.....
T Consensus 249 w-----tDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 249 W-----TDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred C-----ChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 6 36788999999999999999999976633
No 233
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.16 E-value=3.5e-05 Score=71.10 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~V~ 235 (343)
.++..++|.-||.|..+..+++. +..+|+|+|.++.+++.+++++...+ .++.+++++..++.. ..++|.|+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 56789999999999999999986 33589999999999999999887654 479999998876531 24688888
Q ss_pred EC
Q 019324 236 DK 237 (343)
Q Consensus 236 ~~ 237 (343)
.+
T Consensus 98 ~D 99 (305)
T TIGR00006 98 VD 99 (305)
T ss_pred Ee
Confidence 65
No 234
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.05 E-value=6.9e-05 Score=70.67 Aligned_cols=124 Identities=17% Similarity=0.137 Sum_probs=95.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~ 237 (343)
.++.+|||+++..|.=+.++|.. +-..|+|.|.+..-+...+.|+...|+.+.-....|..+++ +.++||-|+..
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD 319 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD 319 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence 67899999999999877777664 23379999999999999999999999988888888988764 34589999987
Q ss_pred ccccc--cccCCCC-------------hhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 238 GTLDA--IGLHPDG-------------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 238 ~~l~~--i~~~~~~-------------~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
..... +...+.. .....++|..+..++++||+|+.++|.-..++.-..+
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV 383 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVV 383 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHH
Confidence 66555 2111110 1112367788999999999999999988766654444
No 235
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.02 E-value=8e-07 Score=75.81 Aligned_cols=94 Identities=15% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~ 241 (343)
..+.++||+|+|.|.++..++.. +.+|++++.|..|+...++. +.+++ ...++. -+-+||+|.|.++++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk-------~ynVl--~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK-------NYNVL--TEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc-------CCcee--eehhhhhcCceeehHHHHHHHH
Confidence 34689999999999999999887 66899999999999988863 22221 111111 134799999988887
Q ss_pred ccccCCCChhhHHHHHHHHhhccCC-CcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAP-GGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~Lkp-gG~lii~ 273 (343)
-- .+..++++.+..+|+| +|++++.
T Consensus 181 Rc-------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 181 RC-------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hh-------cChHHHHHHHHHHhccCCCcEEEE
Confidence 65 3566789999999999 8888774
No 236
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.00 E-value=2.6e-05 Score=67.69 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKGTL 240 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~~l 240 (343)
..++|||||=+...... ..+.-.|+.||+.+. .-.+.+.|+.+.+. .+.||+|.+.-++
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 47999999975543332 223337999999763 23457777777653 4789999999999
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcE-----EEEEecC
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGL-----LVITSCN 276 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~-----lii~~~~ 276 (343)
+++ +.+..+-.++..+.+.|+|+|. |+++.|.
T Consensus 115 NfV----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 115 NFV----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eeC----CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 988 5567888999999999999999 8887653
No 237
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.98 E-value=6.3e-05 Score=68.91 Aligned_cols=118 Identities=22% Similarity=0.189 Sum_probs=75.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~ 239 (343)
..+.+|||+|||+|..+..+.+. ...+++++|.|+.|++.++..+...... ..........+...-...|+|++..+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 45679999999999876666554 2448999999999999999876544311 11111111111111123499999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
|.-+. . ..+..+++++.+.+.+ .|+++.+... ..+.+..++
T Consensus 112 L~EL~----~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR 153 (274)
T PF09243_consen 112 LNELP----S-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEAR 153 (274)
T ss_pred hhcCC----c-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHH
Confidence 88773 2 5566778888887766 6666655443 334444443
No 238
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.97 E-value=2.5e-05 Score=64.05 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=51.8
Q ss_pred eEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324 167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~ 225 (343)
++||+|||.|.++..++..+.. +++++|.++.+.+.+++++..++.+++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 4899999999999999988643 7999999999999999999988877788888877653
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=8.2e-05 Score=66.34 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=79.9
Q ss_pred ccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc--
Q 019324 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-- 227 (343)
Q Consensus 153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-- 227 (343)
.+++.+++ ..++.+|||-|+|+|.++.++++. + -.+++.+|+...-.+.|++.++..++ +++++.+-|+...-+
T Consensus 95 a~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 95 AMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 33444443 388999999999999999999887 2 34899999999999999999999888 589999999988654
Q ss_pred -CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 228 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 228 -~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
...+|.|+..-. .+ ...+-.+.++||.+|.-++
T Consensus 174 ks~~aDaVFLDlP---------aP---w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 KSLKADAVFLDLP---------AP---WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccceEEEcCC---------Ch---hhhhhhhHHHhhhcCceEE
Confidence 456777776422 12 2234666778887764333
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.95 E-value=9.9e-05 Score=64.37 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~ 236 (343)
.++.+||-+|..+|....+++.- | -..|+|+++|+...+..-..++.. +|+--+..|+..... -+..|+|++
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEe
Confidence 67899999999999998888876 4 348999999998777666555544 489889999987642 368999997
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
. + ..+.+...++.++...||+||.+++.
T Consensus 150 D-----V----aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 D-----V----AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E----------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-----C----CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 4 2 12356667889999999999999986
No 241
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.91 E-value=0.00014 Score=72.11 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=109.9
Q ss_pred ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C----CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCC
Q 019324 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD 224 (343)
Q Consensus 151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g----~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~ 224 (343)
+.++++.++.. .+..+|+|..||+|.+.....+. + ...++|.|+++.....|+.|+-.+|+. ++....+|-..
T Consensus 174 v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~ 252 (489)
T COG0286 174 VSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS 252 (489)
T ss_pred HHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence 44555555554 45669999999999987776654 1 136999999999999999999998875 35666666544
Q ss_pred Ccc------CCCccEEEECcccccccc------------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324 225 TKL------ERQFQLVMDKGTLDAIGL------------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280 (343)
Q Consensus 225 ~~~------~~~fD~V~~~~~l~~i~~------------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~ 280 (343)
.+. .+.||+|+++..+....+ .+.....-..+++.+...|+|||+.-+..+.....
T Consensus 253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlf 332 (489)
T COG0286 253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLF 332 (489)
T ss_pred CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCc
Confidence 432 257999999987741111 11222233688999999999998776665554321
Q ss_pred H--HHHHHHhhhhccccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEee
Q 019324 281 E--LVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 342 (343)
Q Consensus 281 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r 342 (343)
. .-..+++... . -..+..+-..|...|.+. |..++.+.|.|
T Consensus 333 r~~~e~~IR~~l~-------------------~-~~~~~~ii~lp~~lF~~t-~i~~~Il~l~k 375 (489)
T COG0286 333 RGGAEKDIRKDLL-------------------E-DNLLEAIIGLPTGLFYNT-GIPTNILFLTK 375 (489)
T ss_pred CCCchHHHHHHHH-------------------h-ccceEEeeeCChhhcccC-CCCeEEEEeec
Confidence 1 2222221110 1 012233444677777776 88888888876
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.89 E-value=0.00011 Score=60.49 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=59.2
Q ss_pred CCCCeEEEEccCccHHHHHHHh-----cCCCcEEEEeCChHHHHHHHHHHHHcC--C-CceEEEEccCCCCccCCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~-----~g~~~v~gvD~s~~~i~~a~~~~~~~~--~-~~i~~~~~D~~~~~~~~~fD~V 234 (343)
.+..+|+|+|||.|.++..|+. ....+|+|+|.++..++.+.++....+ . .++.+...++.........+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5678999999999999999998 533489999999999999999888776 3 4577777776655445566777
Q ss_pred EEC
Q 019324 235 MDK 237 (343)
Q Consensus 235 ~~~ 237 (343)
+..
T Consensus 104 vgL 106 (141)
T PF13679_consen 104 VGL 106 (141)
T ss_pred EEe
Confidence 753
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.86 E-value=5.7e-05 Score=70.15 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=66.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
.++.++|||||++|.++..|+++|. +|+|||..+-.-. +... ++|..+..|.....+ .+.+|.++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~-----L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQS-----LMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHh-----hhCC--CCEEEEeccCcccCCCCCCCCEEEEecc--
Confidence 5788999999999999999999987 9999997653211 1112 589999998877765 678999998643
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCC--cEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVI 272 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~Lkpg--G~lii 272 (343)
..+....+-+.+.|..| ...++
T Consensus 280 ---------e~P~rva~lm~~Wl~~g~cr~aIf 303 (357)
T PRK11760 280 ---------EKPARVAELMAQWLVNGWCREAIF 303 (357)
T ss_pred ---------cCHHHHHHHHHHHHhcCcccEEEE
Confidence 23334556677777665 34444
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.85 E-value=0.00015 Score=65.99 Aligned_cols=108 Identities=26% Similarity=0.372 Sum_probs=65.3
Q ss_pred CCCeEEEEccCccHHHH-HHHhc-CC-CcEEEEeCChHHHHHHHHHHH-HcCC-CceEEEEccCCCCccC-CCccEEEEC
Q 019324 164 SSWSVLDIGTGNGLLLQ-ELSKQ-GF-SDLTGVDYSEDAINLAQSLAN-RDGF-SCIKFLVDDVLDTKLE-RQFQLVMDK 237 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~-~la~~-g~-~~v~gvD~s~~~i~~a~~~~~-~~~~-~~i~~~~~D~~~~~~~-~~fD~V~~~ 237 (343)
.+.+|+=||||.==++. .+++. +. ..|+++|+++.+++.+++... ..++ .++.|+.+|..+...+ ..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999765544 44443 32 379999999999999999777 3333 4799999999876543 689999976
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
.....- ......++.++.+.++||..+++-+.+.
T Consensus 200 alVg~~------~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 200 ALVGMD------AEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp TT-S----------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred hhcccc------cchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 543211 1345578899999999999999875544
No 245
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.00029 Score=64.11 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=58.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~V 234 (343)
.++...+|.--|-|..+..+++.. ...++|+|-++.+++.|++++...+ .++.+++.++.++.. .+++|-|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi 100 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI 100 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence 677899999999999999999884 2479999999999999999988766 488888887665431 2466666
Q ss_pred EE
Q 019324 235 MD 236 (343)
Q Consensus 235 ~~ 236 (343)
+.
T Consensus 101 L~ 102 (314)
T COG0275 101 LL 102 (314)
T ss_pred EE
Confidence 54
No 246
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.80 E-value=5.1e-05 Score=69.11 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=62.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC----CccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER----QFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~----~fD~V~~~~ 238 (343)
.++..|||||+|.|.++..|++.+ .+++++|+++..++..+++.... ++++++.+|+.++.... ....|+++-
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--PNVEVINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--ccceeeecchhccccHHhhcCCceEEEEEe
Confidence 368899999999999999999997 69999999999999999977632 58999999999987533 556777765
Q ss_pred cc
Q 019324 239 TL 240 (343)
Q Consensus 239 ~l 240 (343)
++
T Consensus 106 Py 107 (262)
T PF00398_consen 106 PY 107 (262)
T ss_dssp TG
T ss_pred cc
Confidence 55
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00013 Score=64.15 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=71.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCcc---CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~---~~~fD~V~~~~ 238 (343)
.++..+||||+-||.++..++++|++.|+|+|..-..+..--++ . ++ +.+...|+..+.. .+..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 67899999999999999999999999999999987655433221 1 23 3444556665542 45788999864
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.+ | ....+|..+..+++|+|.++..
T Consensus 153 SF--I--------SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 153 SF--I--------SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred eh--h--------hHHHHHHHHHHhcCCCceEEEE
Confidence 44 2 3346789999999999887764
No 248
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.71 E-value=0.00011 Score=65.19 Aligned_cols=92 Identities=20% Similarity=0.118 Sum_probs=68.8
Q ss_pred ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC
Q 019324 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER 229 (343)
Q Consensus 151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~ 229 (343)
+++....++....++.+|+|||||--=++..+.... ...++|+|++..+++.........+. +.++...|+....+..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~ 170 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKE 170 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTS
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCC
Confidence 444444555555668999999999998888877663 23899999999999999999888885 7889999999987788
Q ss_pred CccEEEECcccccc
Q 019324 230 QFQLVMDKGTLDAI 243 (343)
Q Consensus 230 ~fD~V~~~~~l~~i 243 (343)
..|+.+..-++..+
T Consensus 171 ~~DlaLllK~lp~l 184 (251)
T PF07091_consen 171 PADLALLLKTLPCL 184 (251)
T ss_dssp EESEEEEET-HHHH
T ss_pred CcchhhHHHHHHHH
Confidence 89999987776655
No 249
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00066 Score=58.15 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=79.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~ 237 (343)
.++.+||=+|+.+|....+++.- |...++|+++|+......-..+... +|+--+..|+.... +-+..|+|+..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEEe
Confidence 78999999999999999888886 5447999999999887777666554 48888999998864 24678888863
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+ ..+.+..-+..++...||+||.+++.
T Consensus 153 -----V----AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 153 -----V----AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred -----c----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 2 23456677789999999999987774
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.66 E-value=0.0004 Score=62.62 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=68.0
Q ss_pred CCeEEEEccCcc--HHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C-
Q 019324 165 SWSVLDIGTGNG--LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E- 228 (343)
Q Consensus 165 ~~~VLDiGcG~G--~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~- 228 (343)
-...||||||-= .....+++. +..+|+-+|++|..+..++..+..+......++++|+.+... +
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 357999999943 234445443 345999999999999999998776532238899999987531 1
Q ss_pred CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
...=.++..++++++. ...+...++..++..|.||.+|+++.....
T Consensus 149 ~rPVavll~~vLh~v~----D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVP----DDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TS--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCeeeeeeeeeccCC----CccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1222566778888872 224566788999999999999999876654
No 251
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00068 Score=58.58 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=76.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC---CCccCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL---DTKLERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~---~~~~~~~fD~V~~~~~ 239 (343)
.++.+||++|-|.|.....+-+....+=+-|+..|..++..+...-... .|+....+-.. ..-+++.||-|+-..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEeech
Confidence 6789999999999999998888765577889999999999987643332 36666666443 3335788999985422
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
-.+ .++...+.+.+.++|||+|++-+.
T Consensus 179 ~e~-------yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 179 SEL-------YEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhH-------HHHHHHHHHHHhhhcCCCceEEEe
Confidence 122 267777889999999999987653
No 252
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.64 E-value=0.00022 Score=65.55 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCeEEEEccCccHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHHc-CC-CceEEEEccC----CCCc--cCCCccEE
Q 019324 165 SWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINLAQSLANRD-GF-SCIKFLVDDV----LDTK--LERQFQLV 234 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~--~g~~~v~gvD~s~~~i~~a~~~~~~~-~~-~~i~~~~~D~----~~~~--~~~~fD~V 234 (343)
.-++||||||...+--.|.. .|+ +++|+|+++.+++.|+++.+.+ ++ .+|+++...- .... ..+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999999865433332 265 8999999999999999999999 66 3688875532 2211 13689999
Q ss_pred EECcccccc
Q 019324 235 MDKGTLDAI 243 (343)
Q Consensus 235 ~~~~~l~~i 243 (343)
+||..+..-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999988654
No 253
>PRK10742 putative methyltransferase; Provisional
Probab=97.62 E-value=0.0002 Score=63.80 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCCC--eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc------CC---CceEEEEccCCCCc--cCC
Q 019324 163 LSSW--SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------GF---SCIKFLVDDVLDTK--LER 229 (343)
Q Consensus 163 ~~~~--~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~------~~---~~i~~~~~D~~~~~--~~~ 229 (343)
.++. +|||+-+|.|..++.++..|+ +|+++|-++.+....+.++... +. .+++++.+|..++- ...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 3444 899999999999999999998 5999999999999999988774 21 46889999987653 245
Q ss_pred CccEEEECccccc
Q 019324 230 QFQLVMDKGTLDA 242 (343)
Q Consensus 230 ~fD~V~~~~~l~~ 242 (343)
.||+|+....+.+
T Consensus 164 ~fDVVYlDPMfp~ 176 (250)
T PRK10742 164 RPQVVYLDPMFPH 176 (250)
T ss_pred CCcEEEECCCCCC
Confidence 7999999877654
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.00095 Score=56.45 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=72.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCc---------cCCC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTK---------LERQ 230 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~---------~~~~ 230 (343)
.++.+|||+||..|.++.-..+. +...|.|+|+-.- ...+.+.++++ |+++.. +...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 77999999999999999988887 2348999998421 11235666776 777652 2468
Q ss_pred ccEEEECccccccccCCCChhhHH----HHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 231 FQLVMDKGTLDAIGLHPDGPLKRI----MYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 231 fD~V~~~~~l~~i~~~~~~~~~~~----~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
.|+|++...-.+-+....+..... ..+.-....++|+|.+++-..... ...+.+.+.
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ 198 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHH
Confidence 999998643332222111112222 233445677889999999766554 444555554
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.53 E-value=0.00069 Score=55.14 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=61.1
Q ss_pred cEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc--C-CCccEEEECccccccccC----CCChhhHHHHHHHH
Q 019324 189 DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--E-RQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSV 260 (343)
Q Consensus 189 ~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~--~-~~fD~V~~~~~l~~i~~~----~~~~~~~~~~l~~~ 260 (343)
+|+|+|+.+.+++.++++++..++. +++++...-..+.. + +++|+++.|- .++.-. ...+......++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999998874 69999887666542 3 4899998762 233210 12245667888999
Q ss_pred hhccCCCcEEEEEecCCCh
Q 019324 261 SKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 261 ~~~LkpgG~lii~~~~~~~ 279 (343)
.++|+|||++.++.+....
T Consensus 79 l~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHEEEEEEEEEEE--STC
T ss_pred HHhhccCCEEEEEEeCCCC
Confidence 9999999999997776544
No 256
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.49 E-value=6.5e-05 Score=58.36 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred EEEccCccHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--c-CCCccEEEECccc
Q 019324 169 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--L-ERQFQLVMDKGTL 240 (343)
Q Consensus 169 LDiGcG~G~~~~~la~~----g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~-~~~fD~V~~~~~l 240 (343)
|||||..|..+..+++. +..+++++|..+. .+..++..+..++ .+++++.++..+.- . .+++|+++..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999988887764 2127999999995 2233333332333 37999999986642 2 378999997652
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|- .......++.+.+.|+|||++++..
T Consensus 79 -H~------~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HS------YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CC------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 2455667899999999999998753
No 257
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.0007 Score=57.61 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=72.4
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhc-CCC-cEEEEeCChHHHHH----HHHH--HHHcCCCceEEEEccCCCCccCCCcc
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINL----AQSL--ANRDGFSCIKFLVDDVLDTKLERQFQ 232 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~-~v~gvD~s~~~i~~----a~~~--~~~~~~~~i~~~~~D~~~~~~~~~fD 232 (343)
.++++.+|+|+=.|.|.++..++.. |.. .|+++=..+...-. .+.+ .......|++.+-.++..+..++..|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 4478999999999999999999876 332 67776554432111 1111 11112235666666666555567788
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
++..+...+.+......+....++...+.+.|||||++++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 888755444332222224455677799999999999999853
No 258
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00079 Score=60.90 Aligned_cols=128 Identities=19% Similarity=0.303 Sum_probs=94.0
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC--C--CceEEEEccCCCCc---cCCCcc
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F--SCIKFLVDDVLDTK---LERQFQ 232 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~--~--~~i~~~~~D~~~~~---~~~~fD 232 (343)
....+++||-||-|-|.+....+.+ ...++.-+|++.+.++..++-..... . +++.+..+|...+- ..++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 4466899999999999999988888 34489999999999999988654432 2 57999999876542 257999
Q ss_pred EEEECccccccccCCCCh---hhHHHHHHHHhhccCCCcEEEEE-ecCCChHHHHHHHHhhhhccc
Q 019324 233 LVMDKGTLDAIGLHPDGP---LKRIMYWDSVSKLVAPGGLLVIT-SCNSTKDELVHEVSNLSQRRI 294 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~---~~~~~~l~~~~~~LkpgG~lii~-~~~~~~~~~~~~~~~~~~~~~ 294 (343)
+|+.... .|..+ .-...+++.+.+.||+||++++. .+-+-......++++|....+
T Consensus 198 Vii~dss------dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 198 VIITDSS------DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF 257 (337)
T ss_pred EEEEecC------CccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc
Confidence 9996421 12222 23457788899999999999884 455556667777776665554
No 259
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00085 Score=61.14 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=69.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHH---HHcC-------------------------C--
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA---NRDG-------------------------F-- 212 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~---~~~~-------------------------~-- 212 (343)
..+.+||--|||.|+++..|+..|+ .+-|-++|--|+-...=.+ +..+ +
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3467999999999999999999988 6778888887775443222 1000 0
Q ss_pred ----------CceEEEEccCCCCcc----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 213 ----------SCIKFLVDDVLDTKL----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 213 ----------~~i~~~~~D~~~~~~----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.......+|+.+.-. .+.||+|+...-++ .......+++.|.++|||||+.+=.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-------Ta~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-------TAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-------chHHHHHHHHHHHHhccCCcEEEec
Confidence 011223355544322 24699888765443 3467888999999999999988754
No 260
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.29 E-value=0.00051 Score=65.63 Aligned_cols=99 Identities=24% Similarity=0.273 Sum_probs=74.6
Q ss_pred CCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCc--cCCCccEEEEC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK--LERQFQLVMDK 237 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~--~~~~fD~V~~~ 237 (343)
.+.+|||.=+|+|.=++..+.. +..+|++-|+|+.+++..++|++.++++. +++.+.|+..+- ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999887777666 55699999999999999999999999854 888898987754 46788888642
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
|- .....+++.+.+.++.||+|.++
T Consensus 129 ---------Pf--GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 ---------PF--GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ----------S--S--HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------CC--CCccHhHHHHHHHhhcCCEEEEe
Confidence 11 34457889999999999999996
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.27 E-value=0.011 Score=52.54 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCCCeEEEEccCccHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~ 238 (343)
..+++||=+|=.--. +++++. ....+|+.+|++++.++..++.++..|+ +++.+..|+.+.-+ .++||+++...
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 568899999855432 333333 2345999999999999999999999998 49999999998643 48999999865
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCc-EEEEEecCC
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGG-LLVITSCNS 277 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG-~lii~~~~~ 277 (343)
+ ........++......||..| ..++.....
T Consensus 121 P--------yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 121 P--------YTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp ---------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred C--------CCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 4 334667789999999998766 555544433
No 262
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.25 E-value=0.0064 Score=53.01 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=86.7
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~ 239 (343)
..+.++.||||-.+.+...|.+.+ ...+++.|+++..++.|.+++..+++ ++++..++|....- .+..+|+|+..|.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 445569999999999999999985 44899999999999999999999887 57888888886543 3457898886442
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 288 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~ 288 (343)
+......++++-.+.|+.--++++ -|+.....+.+++..
T Consensus 95 ---------GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~ 133 (226)
T COG2384 95 ---------GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSA 133 (226)
T ss_pred ---------cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHh
Confidence 123344566777777765544544 477777888877763
No 263
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.25 E-value=0.00041 Score=64.09 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=57.5
Q ss_pred ccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----
Q 019324 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---- 227 (343)
Q Consensus 153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---- 227 (343)
.++++.+. ..++..++|.--|.|..+..+++. +..+++|+|-++.+++.+++++.... .++.++.+++.++..
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHH
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHH
Confidence 33444443 267789999999999999999987 33699999999999999998876554 488999988876531
Q ss_pred ---CCCccEEEEC
Q 019324 228 ---ERQFQLVMDK 237 (343)
Q Consensus 228 ---~~~fD~V~~~ 237 (343)
...+|.|+..
T Consensus 88 ~~~~~~~dgiL~D 100 (310)
T PF01795_consen 88 LNGINKVDGILFD 100 (310)
T ss_dssp TTTTS-EEEEEEE
T ss_pred ccCCCccCEEEEc
Confidence 2467777754
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.19 E-value=0.0013 Score=56.34 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-------CCceEEEEccCCCCccC----CCcc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVDDVLDTKLE----RQFQ 232 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-------~~~i~~~~~D~~~~~~~----~~fD 232 (343)
.-.+.|||||-|.++..|+.. +..-+.|.+|--...+..++++...+ .+|+.+...+.....+. +..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 457999999999999999988 44489999999999999988877655 45677777776665321 1111
Q ss_pred E-EEECccccccc--cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 233 L-VMDKGTLDAIG--LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 233 ~-V~~~~~l~~i~--~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
- .++.. -.|+- -|.. ..-...++.+..-+|++||.++..+-... ...+...++
T Consensus 141 kmff~fp-dpHfk~~khk~-rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e 197 (249)
T KOG3115|consen 141 KMFFLFP-DPHFKARKHKW-RIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE 197 (249)
T ss_pred cceeecC-ChhHhhhhccc-eeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence 1 11110 00110 0000 01112566888889999999998654332 333444333
No 265
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.013 Score=54.79 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=83.1
Q ss_pred ccCCCCeEEEEccCccHHHHHHHhcCC---C--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------
Q 019324 161 KYLSSWSVLDIGTGNGLLLQELSKQGF---S--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------- 227 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~---~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------- 227 (343)
.+.++.+|||+++..|.=+..|.+..+ . .|++=|+++.-+...+........+++.+...|+...+-
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 458899999999999998888877622 1 699999999988888877665554555555555544321
Q ss_pred --CCCccEEEECcccccccc--CCC--------------ChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324 228 --ERQFQLVMDKGTLDAIGL--HPD--------------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 282 (343)
Q Consensus 228 --~~~fD~V~~~~~l~~i~~--~~~--------------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~ 282 (343)
...||-|++.-....=+. +.. =+.-...++.+-.++||+||+++.++|.-+..+.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 246898887532111000 000 0122346788999999999999999998765443
No 266
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0027 Score=51.69 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.+..+.+|+|.|.|++....++.|....+|+++++-.+..++-+.-..|+ ....|..-|+.+.++. .|..++..+.-.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEEEeehHH
Confidence 56689999999999999999999866899999999999999988877777 4688999999887663 233333322211
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
.+ .+ +-.++..-|..+-.++..-+.-+.
T Consensus 150 ~m-------~d---Le~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VM-------PD---LEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred HH-------hh---hHHHHHhhCcCCCeEEEEecCCCc
Confidence 11 22 225566677777777765544443
No 267
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.07 E-value=0.0042 Score=53.82 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHH------------------------------
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANR------------------------------ 209 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~------------------------------ 209 (343)
..+-++.|.+||.|.++.-+.-. ....|+|.|+++.+++.|++|+..
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999987665433 234899999999999999998742
Q ss_pred -----------c-CCCceEEEEccCCCCc------cCCCccEEEECccccccccCCCC---hhhHHHHHHHHhhccCCCc
Q 019324 210 -----------D-GFSCIKFLVDDVLDTK------LERQFQLVMDKGTLDAIGLHPDG---PLKRIMYWDSVSKLVAPGG 268 (343)
Q Consensus 210 -----------~-~~~~i~~~~~D~~~~~------~~~~fD~V~~~~~l~~i~~~~~~---~~~~~~~l~~~~~~LkpgG 268 (343)
. +.......+.|+++.. .....|+|+..-....+. ++.+ ..-...+|..+..+|.+++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t-~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT-SWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS-STTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc-cccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 1 1223678888998853 234479999865554442 2222 2345678999999995445
Q ss_pred EEEE
Q 019324 269 LLVI 272 (343)
Q Consensus 269 ~lii 272 (343)
++.+
T Consensus 209 VV~v 212 (246)
T PF11599_consen 209 VVAV 212 (246)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 268
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0012 Score=54.60 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCCeEEEEccCccHHHHHH-Hhc-CCCcEEEEeCChHHHHHHHHHHHHcC---CCceEEEEccCCCCc---cCCCccEEE
Q 019324 164 SSWSVLDIGTGNGLLLQEL-SKQ-GFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTK---LERQFQLVM 235 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~l-a~~-g~~~v~gvD~s~~~i~~a~~~~~~~~---~~~i~~~~~D~~~~~---~~~~fD~V~ 235 (343)
.+.+|||+|.|--.++-.| +.. ....|.-+|-++.+++..++....+. ..+|....-+..... ....||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4679999999965554444 433 34589999999999999988665542 223433333332221 245899999
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS 287 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~ 287 (343)
+..++- + .+....+++.|..+|+|.|..++.+|.+- .+.+.+++.
T Consensus 109 aADClF-f------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~ 155 (201)
T KOG3201|consen 109 AADCLF-F------DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVG 155 (201)
T ss_pred eccchh-H------HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHH
Confidence 977652 2 14556778999999999999888776542 344444444
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.84 E-value=0.0079 Score=55.16 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECcccccc
Q 019324 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI 243 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~l~~i 243 (343)
+|+|+.||.|.++..+.+.|+..+.++|+++.+++..+.|.. +. ++++|+.+... ...+|+++.......+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 699999999999999998888789999999999999998863 21 56677777653 3579999987765544
No 270
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.84 E-value=0.002 Score=59.52 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=86.2
Q ss_pred hhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHH-------HHHHHHHcCCC--ceEEEEccCCCCcc
Q 019324 157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-------AQSLANRDGFS--CIKFLVDDVLDTKL 227 (343)
Q Consensus 157 ~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~-------a~~~~~~~~~~--~i~~~~~D~~~~~~ 227 (343)
.......+++-|+|-..|||.++...+.-|. .|+|.||+-.++.. .+.|++..|.. -+.++.+|....+.
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence 3344568899999999999999999999986 89999999999883 45677777752 37788899988765
Q ss_pred --CCCccEEEECcccccc--------------------ccCCC--Chh----hHHHHHHHHhhccCCCcEEEEEec
Q 019324 228 --ERQFQLVMDKGTLDAI--------------------GLHPD--GPL----KRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 228 --~~~fD~V~~~~~l~~i--------------------~~~~~--~~~----~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
...||.|+|......- ..|-+ +.. ....++.-.++.|..||++++-.+
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 5789999997533110 00111 111 123455667899999999998655
No 271
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.75 E-value=0.0011 Score=54.71 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=70.8
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHH-HHHHHHcCCCceEEEEccCCCC--ccCCCccEEEECcccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLA-QSLANRDGFSCIKFLVDDVLDT--KLERQFQLVMDKGTLD 241 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a-~~~~~~~~~~~i~~~~~D~~~~--~~~~~fD~V~~~~~l~ 241 (343)
+++++-+|...=.+=....++|+++++.+++++--++.- +.++ ..+...|..+. ...++||.+.|..+++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------ssi~p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------SSILPVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------ccccHHHHHHHHHHhhccchhhheechhc
Confidence 457888888876666666677888999999875322211 1110 11222232221 1357899999999999
Q ss_pred ccccC----CCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324 242 AIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278 (343)
Q Consensus 242 ~i~~~----~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~ 278 (343)
|+.+. |-++..-...+.++.++|||||.|++..|...
T Consensus 75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred cccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 99763 33333344567999999999999999887664
No 272
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0031 Score=59.92 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=53.1
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK 226 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~ 226 (343)
...|||||+|||.++...+..|...|++++.-..|.+.|++....+|. ++|+++..--++..
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 457999999999999999999877999999999999999999999987 47887766555443
No 273
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.74 E-value=0.005 Score=53.52 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=54.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-----CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc---------
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL--------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-----g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~--------- 227 (343)
.+++.|+|+|.-.|.-+..++.. +..+|+|+|++-........ +.... ++|+++++|..+...
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 56889999999999877766542 33599999996544332221 11111 589999999987631
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.....+|+..+. |. .......|+....+|++|+++++.
T Consensus 109 ~~~~vlVilDs~--H~------~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 109 PPHPVLVILDSS--HT------HEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp --SSEEEEESS------------SSHHHHHHHHHHT--TT-EEEET
T ss_pred cCCceEEEECCC--cc------HHHHHHHHHHhCccCCCCCEEEEE
Confidence 234446665432 11 123345678899999999999985
No 274
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.0054 Score=53.59 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=82.1
Q ss_pred CCeEEEEccCccHHHHHHHhcC--------C--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------
Q 019324 165 SWSVLDIGTGNGLLLQELSKQG--------F--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------- 226 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g--------~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------- 226 (343)
-.++.|++...|.++..|.++- . ..+++||+.+.+ .++.+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence 4589999999999999888751 1 139999996542 3357888999999864
Q ss_pred c-CCCccEEEECccccccccCCCChh----hHHHHHHHHhhccCCCcEEEEEec-CCChHHHHHHHHhhhh
Q 019324 227 L-ERQFQLVMDKGTLDAIGLHPDGPL----KRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSNLSQ 291 (343)
Q Consensus 227 ~-~~~fD~V~~~~~l~~i~~~~~~~~----~~~~~l~~~~~~LkpgG~lii~~~-~~~~~~~~~~~~~~~~ 291 (343)
+ .++.|+|+|.+.-+.-.+|..... .+...|.-...+|||||.|+--.+ ......+...++.|..
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhh
Confidence 2 358999999998777777664432 223455667889999999998433 4444555556665543
No 275
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0048 Score=57.73 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECcccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD 241 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~ 241 (343)
+.+|||.-+|+|.=++..+.. +..+|+.-|+||.+++.+++|+..+...+...+..|+..+-. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence 679999999999988888776 444899999999999999999999844466666677765432 356666542
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+|- ..+..+++.+.+.++.||++-++
T Consensus 128 ----DPF--GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 128 ----DPF--GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ----CCC--CCCchHHHHHHHHhhcCCEEEEE
Confidence 222 23446889999999999999885
No 276
>PHA01634 hypothetical protein
Probab=96.64 E-value=0.0045 Score=49.08 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=45.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~ 211 (343)
..+++|+|||.+.|..++.++..|++.|++++.++...+..+++.+.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 5688999999999999999999999999999999999999999887654
No 277
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0014 Score=59.42 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=78.3
Q ss_pred CCCCeEEEEccCccHHHH-HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~-~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
..+..|.|+-+|-|.+++ .+...|++.|+|+|.+|.+++..+++++.+++ .++..+.+|-....+....|-|... .
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG-L- 270 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG-L- 270 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec-c-
Confidence 456789999999999999 77777888999999999999999999999887 4677888888887777777777652 1
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcE-EEEEecCC
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGL-LVITSCNS 277 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~-lii~~~~~ 277 (343)
+ | .-++-+-.+.++|||.|- ++-..-|-
T Consensus 271 --l---P----Sse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 271 --L---P----SSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred --c---c----ccccchHHHHHHhhhcCCcEEEEeccc
Confidence 1 1 122345677888888544 54444443
No 278
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0067 Score=56.26 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC----CCccCCCccEEEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL----DTKLERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~----~~~~~~~fD~V~~ 236 (343)
..+.+|||+|.|.|.-+.++-.. ....++-++.|+..-+..-................|++ .++....|++++.
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 44668999999999877666554 13477888888766555544333222122222333333 3333345666554
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
++-+. +......+..+++.+..++.|||.++++..... ..+.+...+
T Consensus 192 ---~~eLl-~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR 239 (484)
T COG5459 192 ---LDELL-PDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRAR 239 (484)
T ss_pred ---hhhhc-cccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHH
Confidence 44332 333334445588999999999999999876554 334444333
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.47 E-value=0.0085 Score=46.17 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=28.1
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCC
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 196 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s 196 (343)
+.....|||||+|.+.-.|.+.|+ .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 466899999999999999999998 78899973
No 280
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.39 E-value=0.017 Score=50.92 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=70.8
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEE
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVM 235 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~ 235 (343)
+.++.+||-+|+++|....++..- |. .-|+++++|+..=...-..+++. +||--+..|+..... -...|+|+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEEe
Confidence 378999999999999988888776 33 27999999987655444433322 478788888876531 24566666
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+. -..+.+...+.-++...||+||.++++
T Consensus 232 aD---------vaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 232 AD---------VAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred cc---------CCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 52 122344445556888999999999985
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.39 E-value=0.038 Score=49.48 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC------CceEEEEccCCCCc----cCCC-cc
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVLDTK----LERQ-FQ 232 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~------~~i~~~~~D~~~~~----~~~~-fD 232 (343)
+..+|||+|.|+|..+..++..+..+|...|... .+...+.+...++. ..+.....+..... .... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4668999999999888888886445888888754 44444443322221 13444444433332 1233 89
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
+|+...++..- .... .++.-+...|..+|++++.+.-+..
T Consensus 165 lilasDvvy~~----~~~e---~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 165 LILASDVVYEE----ESFE---GLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EEEEeeeeecC----Ccch---hHHHHHHHHHhcCCeEEEEEecccc
Confidence 99987766432 2223 4457777888888877777665553
No 282
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0025 Score=61.57 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=80.0
Q ss_pred hccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-----CCCc
Q 019324 160 DKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----ERQF 231 (343)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-----~~~f 231 (343)
....++.+|||.-|++|.-++..+.. |..+|++-|.++++|+..++|.+.++.. .++....|+...-. ...|
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 34467889999999999998888876 5569999999999999999999988764 36666677655421 3678
Q ss_pred cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
|+|-.. |. .....+|+.+.+.++.||+|+++
T Consensus 185 DvIDLD---------Py--Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 185 DVIDLD---------PY--GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ceEecC---------CC--CCccHHHHHHHHHhhcCCEEEEE
Confidence 877642 22 23346889999999999999986
No 283
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.27 E-value=0.011 Score=55.02 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=66.8
Q ss_pred eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECcccccc
Q 019324 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI 243 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~l~~i 243 (343)
+++|+.||.|.+...+.+.|+.-+.++|+++.+++.-+.|+. ....+|+.+... ++.+|+++.......+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCceE
Confidence 799999999999999999998789999999999999999873 788999998863 2269999987665544
Q ss_pred ccC-----C-CChhhHHHHHHHHhhccCCCcEEEE
Q 019324 244 GLH-----P-DGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 244 ~~~-----~-~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
..- . +....+..-+-++.+.++|.- +++
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ 108 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKPKY-FLL 108 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS-SE-EEE
T ss_pred eccccccccccccchhhHHHHHHHhhccceE-EEe
Confidence 321 1 111222323344556678864 444
No 284
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.98 E-value=0.00086 Score=51.91 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=34.3
Q ss_pred CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
.||+|+|..+..+|.++. ++..+..+++.+++.|+|||++++..-++
T Consensus 1 ~yDvilclSVtkWIHLn~-GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNW-GDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHH-HHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecC-cCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 489999999888885432 23566789999999999999999974433
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.96 E-value=0.035 Score=52.08 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=66.0
Q ss_pred ccCCCCeEEEEccC-ccHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-CCCCc-cCCCccEEEE
Q 019324 161 KYLSSWSVLDIGTG-NGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLDTK-LERQFQLVMD 236 (343)
Q Consensus 161 ~~~~~~~VLDiGcG-~G~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-~~~~~-~~~~fD~V~~ 236 (343)
+..++.+|+-+|+| .|.++..+++ .| .+|+++|.|+.-.+.|++.-. -.++... ..... ..+.||+|+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEE
Confidence 44789999999987 3467788888 47 499999999999999997532 1223322 11111 1234999997
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
.-. . ..+....+.|++||.+++....
T Consensus 236 tv~-~-------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 236 TVG-P-------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CCC-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence 543 2 2358889999999999997554
No 286
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.96 E-value=0.039 Score=51.93 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=75.1
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC---C-CccEEEECccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R-QFQLVMDKGTL 240 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~---~-~fD~V~~~~~l 240 (343)
..+++|+.||.|.+..-+...|+.-+.++|+++.+++.-+.|.. ...++..|+...... . .+|+++.....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhccccCCCEEEeCCCC
Confidence 45899999999999999999998889999999999999998874 245677777765432 2 78999988776
Q ss_pred cccccC------CCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 241 DAIGLH------PDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 241 ~~i~~~------~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+.+..- .+....+..-+.++...++| -.+++.
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE 115 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence 666431 11122223445677778888 455553
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.93 E-value=0.011 Score=57.47 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=65.7
Q ss_pred CCeEEEEccCccHHHHHHHhcCCC--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-cCCCccEEEECccc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGTL 240 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-~~~~fD~V~~~~~l 240 (343)
=..|+|+.+|.|.++.+|.+.+.- .|+-+ ..++.+...-. .|+ --.-.|..+. + .+.+||+|.++++|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIyd----RGL---IG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYD----RGL---IGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhh----ccc---chhccchhhccCCCCcchhheehhhhh
Confidence 458999999999999999987531 22222 12222222211 121 1122243332 2 47899999999988
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
.... .......++-++-|+|+|||.++|-....
T Consensus 438 s~~~----~rC~~~~illEmDRILRP~G~~iiRD~~~ 470 (506)
T PF03141_consen 438 SLYK----DRCEMEDILLEMDRILRPGGWVIIRDTVD 470 (506)
T ss_pred hhhc----ccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence 7662 33567788899999999999999864433
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=95.79 E-value=0.02 Score=52.74 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=42.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~ 209 (343)
.++..|||..||+|..+....+.|- +.+|+|+++..++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 6899999999999999999988874 899999999999999998753
No 289
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.71 E-value=0.05 Score=48.32 Aligned_cols=76 Identities=25% Similarity=0.245 Sum_probs=47.9
Q ss_pred CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHH---HHHHcCC------CceEEEEccCCCCc--cCCCccEE
Q 019324 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS---LANRDGF------SCIKFLVDDVLDTK--LERQFQLV 234 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~---~~~~~~~------~~i~~~~~D~~~~~--~~~~fD~V 234 (343)
.+|||.-||-|..++.++..|+ +|++++-||.+-...+. ++..... .+++++.+|..++- .+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4999999999999999998887 89999999987776664 2222221 27999999988753 36899999
Q ss_pred EECccccc
Q 019324 235 MDKGTLDA 242 (343)
Q Consensus 235 ~~~~~l~~ 242 (343)
+....+.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 99877654
No 290
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.66 E-value=0.23 Score=44.90 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=81.8
Q ss_pred cCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEEC
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDK 237 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~ 237 (343)
...++.|+-+| -.-..+++++-.| ..+|..+|+++..++...+.++..|+.|++.++-|+.+.-+ .+.||+++..
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecC
Confidence 36788899999 4445566665554 45999999999999999999999999889999999998743 4789999875
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCC---cEEEEEecCCChHH
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPG---GLLVITSCNSTKDE 281 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg---G~lii~~~~~~~~~ 281 (343)
.+- .-.....++..=...||.- |++.++........
T Consensus 229 Ppe--------Ti~alk~FlgRGI~tLkg~~~aGyfgiT~ressidk 267 (354)
T COG1568 229 PPE--------TIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDK 267 (354)
T ss_pred chh--------hHHHHHHHHhccHHHhcCCCccceEeeeeccccHHH
Confidence 321 1134456666666777765 77887765555443
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.59 E-value=0.063 Score=50.27 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=54.8
Q ss_pred EEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECcccccc
Q 019324 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI 243 (343)
Q Consensus 168 VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i 243 (343)
|+|+.||.|.++.-+.+.|+.-+.++|+++.+++..+.|.. + .++.+|+.+... -..+|+++.......+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 68999999999999998898677889999999999998763 2 345678777643 2358999987655444
No 292
>PRK13699 putative methylase; Provisional
Probab=95.49 E-value=0.035 Score=49.37 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=42.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~ 210 (343)
.++..|||..||+|..+....+.|- +.+|+|+++...+.+.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 6889999999999999999988875 8999999999999999987653
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.41 E-value=0.019 Score=50.39 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHH
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~ 205 (343)
.++..|||..||+|..+.+..+.|- +.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 6789999999999999999999874 89999999999999875
No 294
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.39 E-value=0.046 Score=49.39 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCeEEEEccCccHHHHHHHhc-C--------CCcEEEEeCChHHHHHHHHHHHHcC-----C-CceEEEEccCCCCccCC
Q 019324 165 SWSVLDIGTGNGLLLQELSKQ-G--------FSDLTGVDYSEDAINLAQSLANRDG-----F-SCIKFLVDDVLDTKLER 229 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g--------~~~v~gvD~s~~~i~~a~~~~~~~~-----~-~~i~~~~~D~~~~~~~~ 229 (343)
+.+|+|+|+|+|.++..+++. . ..+++-+|.|+.+.+.-++++.... . .++.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 469999999999998888764 1 1379999999999999888876521 1 24555 33443332
Q ss_pred CccEEEECccccccc
Q 019324 230 QFQLVMDKGTLDAIG 244 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~ 244 (343)
..-+|++|.++|++.
T Consensus 95 ~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 FPGFIIANELFDALP 109 (252)
T ss_dssp CCEEEEEESSGGGS-
T ss_pred CCEEEEEeeehhcCc
Confidence 345677777776664
No 295
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.39 E-value=0.13 Score=51.15 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=63.2
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-----------Cc---
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----------TK--- 226 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-----------~~--- 226 (343)
.++.+|+-+|||. |..+...++. |+ .|+++|.++..++.+++. |. ++...|..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA---~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA---EFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---eEEEeccccccccccchhhhcchhH
Confidence 5789999999996 4455555555 76 899999999999988862 32 222222111 00
Q ss_pred -------c---CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 227 -------L---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 227 -------~---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+ -..+|+|+....... ......+.++..+.+||||+++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 146899997543211 01112234899999999999888655
No 296
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.36 E-value=0.17 Score=48.52 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=35.6
Q ss_pred cCCCccEEEECccccccccCCCCh-------------------------------hhHHHHHHHHhhccCCCcEEEEEec
Q 019324 227 LERQFQLVMDKGTLDAIGLHPDGP-------------------------------LKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 227 ~~~~fD~V~~~~~l~~i~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+.++.+++++...++++.--|... .+...+|+.=.+-|.|||+++++..
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 367899999998888885322211 1234566666788999999999764
Q ss_pred CC
Q 019324 276 NS 277 (343)
Q Consensus 276 ~~ 277 (343)
.+
T Consensus 239 Gr 240 (386)
T PLN02668 239 GR 240 (386)
T ss_pred cC
Confidence 44
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.22 E-value=0.058 Score=51.82 Aligned_cols=108 Identities=22% Similarity=0.259 Sum_probs=66.4
Q ss_pred cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-CC----CCccCCCccEE
Q 019324 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VL----DTKLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-~~----~~~~~~~fD~V 234 (343)
..++.+||.+|||. |.++..+++. |...++++|.++...+.+++.. +...+.....+ .. +......+|+|
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 35678999999987 8888888877 5546999999999999888742 11111111111 11 11112469999
Q ss_pred EECccc-----------cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 235 MDKGTL-----------DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 235 ~~~~~l-----------~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+..-.- .++ +++.. +....+..+.++|+++|.++....
T Consensus 259 ld~vg~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQAL-LKLET--DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EECCCCcccccccccccccc-ccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence 874211 111 01111 112356888999999999988643
No 298
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.16 E-value=0.043 Score=48.23 Aligned_cols=80 Identities=14% Similarity=0.310 Sum_probs=54.4
Q ss_pred CCCCeEEEEccCccHHHHHHH--hcCCCcEEEEeCChHHHHHHHHHHHHc-CCC-ceEEEEc-cCCCC---c--cCCCcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELS--KQGFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLVD-DVLDT---K--LERQFQ 232 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la--~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~-~i~~~~~-D~~~~---~--~~~~fD 232 (343)
.++.++||||.|.--+--.+- +.|+ +.+|.|+++.++..|+.+...+ ++. .|++... |-... . ..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 357799999988754432222 2355 8999999999999999998877 442 3554432 21111 1 157899
Q ss_pred EEEECcccccc
Q 019324 233 LVMDKGTLDAI 243 (343)
Q Consensus 233 ~V~~~~~l~~i 243 (343)
+++||..++.-
T Consensus 156 ~tlCNPPFh~s 166 (292)
T COG3129 156 ATLCNPPFHDS 166 (292)
T ss_pred eEecCCCcchh
Confidence 99999988644
No 299
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.071 Score=50.07 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC---------CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC-cc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQ 232 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g---------~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~-fD 232 (343)
..+..++|||.|.|.++..++... ..++.-|++|+...+.=+++++... ..+.........++. .-
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~----~~~~~~~~~e~~p~~~~~ 151 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE----DLIRWVEWVEDLPKKFPG 151 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc----cchhHHHHHHhccccCce
Confidence 346789999999999988877631 3489999999999998888876543 111111111112333 44
Q ss_pred EEEECccccccc
Q 019324 233 LVMDKGTLDAIG 244 (343)
Q Consensus 233 ~V~~~~~l~~i~ 244 (343)
+|++|..+|++.
T Consensus 152 i~~~NElfDAlP 163 (370)
T COG1565 152 IVVSNELFDALP 163 (370)
T ss_pred EEEechhhcccc
Confidence 566676666664
No 300
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.11 E-value=0.012 Score=53.18 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=62.8
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHH-------HHHHcCCCc---eEEEEccCCCCcc--CC-
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-------LANRDGFSC---IKFLVDDVLDTKL--ER- 229 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~-------~~~~~~~~~---i~~~~~D~~~~~~--~~- 229 (343)
..+++|||+|||.|...+.....|...+...|++...++.-.- .+....-++ ......++.++.. .+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 4578999999999999999988876689999999887742221 000000011 1222221112221 23
Q ss_pred -CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 230 -QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 230 -~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.||+|.+..++..+ + .....+......+++++|++++.
T Consensus 195 ~~ydlIlsSetiy~~----~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSI----D--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCc----c--hhhhhHhhhhhhcCCccchhhhh
Confidence 78888887766444 1 12122245667777888888774
No 301
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.96 E-value=0.67 Score=46.29 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=75.0
Q ss_pred CCCeEEEEccCccHHHHHHHhc---C--CCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCC-cc--CCCccE
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQ---G--FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT-KL--ERQFQL 233 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~---g--~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~-~~--~~~fD~ 233 (343)
+...|.|..||+|.++...... | ...++|-+..+.+...++.++..++.. ......+|-... .. ...||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5679999999999998765432 2 136999999999999999987666542 333434443332 22 356999
Q ss_pred EEECccccccc----------------cC--CCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 234 VMDKGTLDAIG----------------LH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 234 V~~~~~l~~i~----------------~~--~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
|+++..+.... .| +.....-..++..+..+|++||...++-+..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 99887653310 01 1111223467788899999999876655443
No 302
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.86 E-value=0.27 Score=46.73 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCC----CCccCCCccEEE
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVL----DTKLERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~----~~~~~~~fD~V~ 235 (343)
.++.+|+-+|||+ |.++..+++. |+.+|+++|.++.-++.|++.... ..+..... +.. .......+|+++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---DVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 3444999999996 5666666665 778999999999999999984321 11111111 110 111123699998
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
..... ...+..+.++++|||.+++.....
T Consensus 244 e~~G~-------------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 244 EAVGS-------------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ECCCC-------------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 64321 125689999999999999865543
No 303
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.83 E-value=0.21 Score=49.17 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------------
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------------- 227 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------------- 227 (343)
..+++|+.||.|.+...+-..|+.-|.++|+++.+.+.-+.|+... +....+..|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhhhc
Confidence 5699999999999999998888878899999999999888875311 233445566665431
Q ss_pred -CCCccEEEECccccccc
Q 019324 228 -ERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 228 -~~~fD~V~~~~~l~~i~ 244 (343)
-..+|+++.......+.
T Consensus 166 ~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred cCCCCCEEEEcCCCCccc
Confidence 12579888776555443
No 304
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.21 E-value=0.29 Score=45.30 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=66.5
Q ss_pred ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC--CCC------cc-CC
Q 019324 161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDT------KL-ER 229 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~--~~~------~~-~~ 229 (343)
....+.+||-+|+|. |.++...++. |+.+|+.+|+++..++.|++ + |.+.+......- ... .. ..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence 447899999999996 4555555555 88899999999999999998 3 332222221111 010 01 24
Q ss_pred CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
.+|+.+....++ ..++.....+++||.+++.....
T Consensus 242 ~~d~~~dCsG~~-------------~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 242 QPDVTFDCSGAE-------------VTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred CCCeEEEccCch-------------HHHHHHHHHhccCCEEEEeccCC
Confidence 588888754432 33477889999999988765444
No 305
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=0.13 Score=50.48 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCeEEEEccCccHHHHHHHh---cC--CCcEEEEeCChHHHHHHHHHH-HHcCCCceEEEEccCCCCccC-CCccEEEEC
Q 019324 165 SWSVLDIGTGNGLLLQELSK---QG--FSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK 237 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~---~g--~~~v~gvD~s~~~i~~a~~~~-~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~ 237 (343)
...|+-+|.|-|-+.....+ .- .-++++++-+|+|+-..+.+- ...+ .+++++.+|++++..+ .+.|++++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-~~Vtii~~DMR~w~ap~eq~DI~VS- 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-NRVTIISSDMRKWNAPREQADIIVS- 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-CeeEEEeccccccCCchhhccchHH-
Confidence 45788899999976544433 21 127999999999998888732 2222 4799999999999864 78999886
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
..+..++...- .. ..|..+-+.|||+|+.|=...
T Consensus 446 ELLGSFGDNEL---SP-ECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 446 ELLGSFGDNEL---SP-ECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred HhhccccCccC---CH-HHHHHHHhhcCCCceEccchh
Confidence 23333331112 22 467899999999998776433
No 306
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.88 E-value=0.29 Score=46.15 Aligned_cols=115 Identities=11% Similarity=0.059 Sum_probs=59.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhc------------C----C-CcEEEEeCChHHHHHHHHHHHHc-----CCCce--EEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ------------G----F-SDLTGVDYSEDAINLAQSLANRD-----GFSCI--KFL 218 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~------------g----~-~~v~gvD~s~~~i~~a~~~~~~~-----~~~~i--~~~ 218 (343)
.+.-+|+|+||.+|..++.+... + . -+|+-.|+-.+=-...=+.+... ...++ ..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45679999999999887766542 1 0 15777776543222221111111 01122 222
Q ss_pred EccCCCC-ccCCCccEEEECccccccccCCCC--------------------------------hhhHHHHHHHHhhccC
Q 019324 219 VDDVLDT-KLERQFQLVMDKGTLDAIGLHPDG--------------------------------PLKRIMYWDSVSKLVA 265 (343)
Q Consensus 219 ~~D~~~~-~~~~~fD~V~~~~~l~~i~~~~~~--------------------------------~~~~~~~l~~~~~~Lk 265 (343)
.+.+-.- -++++.|++++...++++.--|.. ..+...+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 3333322 246899999999998888532211 1233456666678899
Q ss_pred CCcEEEEEecCC
Q 019324 266 PGGLLVITSCNS 277 (343)
Q Consensus 266 pgG~lii~~~~~ 277 (343)
|||+++++....
T Consensus 175 ~GG~mvl~~~gr 186 (334)
T PF03492_consen 175 PGGRMVLTFLGR 186 (334)
T ss_dssp EEEEEEEEEEE-
T ss_pred cCcEEEEEEeec
Confidence 999999975543
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.44 E-value=0.58 Score=43.44 Aligned_cols=93 Identities=27% Similarity=0.380 Sum_probs=60.4
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-------CccCCCcc
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-------TKLERQFQ 232 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-------~~~~~~fD 232 (343)
..++.+||..||| .|..+..+++. |. +|++++.++...+.+++ .+.. .+..+-.. ....+.+|
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCCce
Confidence 3567889998876 47777777776 65 69999999998887754 2321 11111111 11235689
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+++..... ...++.+.+.|+++|.++....
T Consensus 235 ~vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 235 VIFDFVGT-------------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EEEECCCC-------------HHHHHHHHHHhhcCCEEEEECC
Confidence 88863211 1245788999999999987643
No 308
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.43 E-value=0.038 Score=52.64 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT 225 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~ 225 (343)
.++..|.|+.||.|-++..++..++ .|++-|.++.+++..+.++..+.+. +++.+..|+...
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 6789999999999999999999985 9999999999999999999888763 477777776543
No 309
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.19 E-value=0.61 Score=36.45 Aligned_cols=62 Identities=24% Similarity=0.439 Sum_probs=47.1
Q ss_pred CCCeEEEEccCcc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEEC
Q 019324 164 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDK 237 (343)
Q Consensus 164 ~~~~VLDiGcG~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~ 237 (343)
...+|.|+|-|-= ..+..|+++|+ .|+++|+.+. .++ ..+++...|+++... -...|+|.+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~--------~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP--------EGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc--------ccceEEEccCCCccHHHhhCccceeec
Confidence 3459999998765 35777888887 8999999877 111 378999999999764 3567888874
No 310
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.12 E-value=1.7 Score=36.55 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=65.6
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~ 237 (343)
....+|+-|||=+-...+.-......+++-.|++.+.-. .+ .+ .|..-|..... +.++||+|++.
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~-~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FG-GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cC-Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 446799999997754444331122338999999865332 22 13 46666766542 24799999998
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
..+ +. .+-..+....+..++|+++.+++.++......+.+
T Consensus 94 PPF--l~-----~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ 133 (162)
T PF10237_consen 94 PPF--LS-----EECLTKTAETIRLLLKPGGKIILCTGEEMEELIKK 133 (162)
T ss_pred CCC--CC-----HHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHH
Confidence 877 31 23344555666777788898888766544333333
No 311
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.06 E-value=0.22 Score=45.95 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=76.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-------CC--------------CcEEEEeCChH--HHHHHHHHHHHc---------
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-------GF--------------SDLTGVDYSED--AINLAQSLANRD--------- 210 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-------g~--------------~~v~gvD~s~~--~i~~a~~~~~~~--------- 210 (343)
.+..+||-||.|.|.=...++.. .. -.++.+|+.+. .++.....+...
T Consensus 85 ~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~ 164 (315)
T PF11312_consen 85 KKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA 164 (315)
T ss_pred ccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence 45689999999998543333321 00 17999999964 444444433322
Q ss_pred ----CC----CceEEEEccCCCCccC--------CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 211 ----GF----SCIKFLVDDVLDTKLE--------RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 211 ----~~----~~i~~~~~D~~~~~~~--------~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
.. -++.|.+.|+.....+ ...++|...++++-+.. .......++|.++-..++||..|+|+.
T Consensus 165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs--~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFS--TSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHh--cChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 01 1589999999987531 24677777777765532 224677789999999999999999975
Q ss_pred cCCC
Q 019324 275 CNST 278 (343)
Q Consensus 275 ~~~~ 278 (343)
....
T Consensus 243 SpGS 246 (315)
T PF11312_consen 243 SPGS 246 (315)
T ss_pred CCCC
Confidence 5443
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.90 E-value=0.31 Score=45.91 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCc-cCCCccEEEECc
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~-~~~~fD~V~~~~ 238 (343)
.++.+||-.||| .|.++..+++. |..+|+++|.++..++.+++. |... +.....++.+.. ..+.+|+|+...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 457899999875 34455556655 665799999999988888752 3221 111111111111 123588888632
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
.- . ..+..+.++|++||++++...
T Consensus 244 G~----------~---~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 GH----------P---SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC----------H---HHHHHHHHHhhcCCEEEEEcc
Confidence 11 1 234778889999999998654
No 313
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=2.8 Score=37.54 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCCCeEEEEccCccHHHHHHHh----cCC-CcEEEEeCChHHHHHHHHHHHH-c-CCCceEEEEccCCCCc---cCCCcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSK----QGF-SDLTGVDYSEDAINLAQSLANR-D-GFSCIKFLVDDVLDTK---LERQFQ 232 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~----~g~-~~v~gvD~s~~~i~~a~~~~~~-~-~~~~i~~~~~D~~~~~---~~~~fD 232 (343)
..+.+.+|+|.|+..-+..|.. .|. .+++.+|+|...+....+.+.. . ++ .+.-+++|....- +...--
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCCeE
Confidence 4578999999999976555544 343 3899999999988766554332 2 22 4666777765421 122222
Q ss_pred EE-EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324 233 LV-MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283 (343)
Q Consensus 233 ~V-~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~ 283 (343)
++ +...++.. -.+.....++..+...|+||-++++-.-.....+.+
T Consensus 156 l~~flGStlGN-----~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~L 202 (321)
T COG4301 156 LFVFLGSTLGN-----LTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERL 202 (321)
T ss_pred EEEEecccccC-----CChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHH
Confidence 33 33334433 346677789999999999999999965555444433
No 314
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.52 E-value=0.032 Score=45.94 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=37.9
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
+++.|+|++..+++|+.+ ..-...++++++.|||||+|-+..|..
T Consensus 45 dns~d~iyaeHvlEHlt~-----~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTY-----DEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred CcchHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 689999999999999863 455678899999999999999976543
No 315
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.03 E-value=0.88 Score=40.95 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=67.3
Q ss_pred CCCeEEEEccCccHHHHHHHh----cC--CCcEEEEeCC--------------------------hHHHHHHHHHHHHcC
Q 019324 164 SSWSVLDIGTGNGLLLQELSK----QG--FSDLTGVDYS--------------------------EDAINLAQSLANRDG 211 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~----~g--~~~v~gvD~s--------------------------~~~i~~a~~~~~~~~ 211 (343)
-+..|+|+||=.|..+..++. .+ ..+++++|-= ....+..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 356899999999976654432 12 2368887732 124566666776666
Q ss_pred C--CceEEEEccCCCCccC---CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 212 F--SCIKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 212 ~--~~i~~~~~D~~~~~~~---~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
+ +++.++.+.+.+..+. ..+-++. + +-+-.......|+.++..|.|||++++-.++. ..-.+-+
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~-------l--D~DlYesT~~aLe~lyprl~~GGiIi~DDY~~--~gcr~Av 222 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLH-------L--DCDLYESTKDALEFLYPRLSPGGIIIFDDYGH--PGCRKAV 222 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEE-------E-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT--HHHHHHH
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEE-------E--eccchHHHHHHHHHHHhhcCCCeEEEEeCCCC--hHHHHHH
Confidence 5 4799999998654322 2222222 2 22333566678899999999999999988777 3333344
Q ss_pred Hhhh
Q 019324 287 SNLS 290 (343)
Q Consensus 287 ~~~~ 290 (343)
.+|.
T Consensus 223 deF~ 226 (248)
T PF05711_consen 223 DEFR 226 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 316
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.75 E-value=0.89 Score=39.00 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=68.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc----CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQ 230 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~----g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~ 230 (343)
.++..|+|+|.--|..++..+.. |. .+|+++|++-...+-+... .++|.|+.++-.+... .+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 56789999999998877766653 41 2899999997665444332 3689999999887642 222
Q ss_pred ccEEE-ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 231 FQLVM-DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 231 fD~V~-~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
+--|+ +-..-++ .....+.|+....+|.-|.++++...+
T Consensus 143 y~kIfvilDsdHs-------~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 143 YPKIFVILDSDHS-------MEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CCcEEEEecCCch-------HHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 33333 3222222 255567778889999999998886443
No 317
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.70 E-value=0.67 Score=42.98 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
++.+||-+||| .|.++..+++. |+..|+++|.++..++.++.. . ++ |..+. ....+|+|+....-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G~- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASGD- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCCC-
Confidence 46689988875 45566666665 775688889888776666531 1 11 11110 12468988864221
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
...++.+.+.|+++|++++...
T Consensus 211 ------------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 ------------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------------HHHHHHHHHhhhcCcEEEEEee
Confidence 1235788899999999997643
No 318
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.53 E-value=0.46 Score=46.38 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=82.1
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCCccE
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQFQL 233 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~ 233 (343)
....++|-+|-|.|.+...+... +...+++++++|.|++.++..+....-.+.++...|..+.- .+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45678999999999998888665 54599999999999999998764332223344444443321 2467998
Q ss_pred EEEC-c--cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC---hHHHHHHHHhhh
Q 019324 234 VMDK-G--TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVSNLS 290 (343)
Q Consensus 234 V~~~-~--~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~---~~~~~~~~~~~~ 290 (343)
++.. . -.+.+.+.|.. --...++..+...|.|.|.+++-...++ ..++...+.+..
T Consensus 374 l~~dvds~d~~g~~~pp~~-fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf 435 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPA-FVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF 435 (482)
T ss_pred EEEECCCCCcccCcCCchH-HHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence 8752 1 12233322222 2344678999999999999998443332 345555554433
No 319
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.50 E-value=1.4 Score=41.45 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~ 239 (343)
.++.+||-+|||. |.++..+++. |..+|+++|.++.-++.+++ .+. . ....+.. ....+|+|+....
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~~~~---~~~g~d~viD~~G 231 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLIDDIP---EDLAVDHAFECVG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehhhhh---hccCCcEEEECCC
Confidence 5688999999863 3344455543 44589999999988887764 121 1 1111111 1124888886321
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
- ......+....++|++||++++...
T Consensus 232 ~----------~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 232 G----------RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C----------CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0 0011345788899999999987543
No 320
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.46 E-value=1.1 Score=42.43 Aligned_cols=95 Identities=19% Similarity=0.320 Sum_probs=56.3
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeC---ChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEEC
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDY---SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~---s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~ 237 (343)
.++.+||-+|||. |.++..+++. |. +|++++. ++.-.+.+++ .|...+.....+..+....+.+|+|+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhhhhhcCCCCEEEEC
Confidence 4678999999863 4556666665 66 7999987 5666666654 3322111111111110112468888863
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
..- . ..+....++|++||.+++...
T Consensus 246 ~g~----------~---~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 TGV----------P---PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCC----------H---HHHHHHHHHccCCcEEEEEec
Confidence 211 1 245788899999999987543
No 321
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.20 E-value=4.4 Score=35.46 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=63.3
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++++||-.|++.| .+...+++.|+ +|++++-++.....+.+.....+ ++.++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4678999998644 23444555676 89999999877766544443322 67889999987531 13
Q ss_pred CccEEEECccccccccCCCCh-----------hhHHHHHHHHhhccCCCcEEEEEe
Q 019324 230 QFQLVMDKGTLDAIGLHPDGP-----------LKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~~~~~~~-----------~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
..|.++.+....... ..... .....+++.+.+.++++|.+++.+
T Consensus 81 ~id~ii~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 81 AIDGLVVTVGGYVED-TVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCEEEEcCCCcCCC-chHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 468777654321100 00000 011234566667777888877754
No 322
>PTZ00357 methyltransferase; Provisional
Probab=91.13 E-value=1.4 Score=44.98 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=61.6
Q ss_pred CeEEEEccCccHHHHHHHh----cCCC-cEEEEeCChHHHHHHHHHHH---HcCC------CceEEEEccCCCCccC---
Q 019324 166 WSVLDIGTGNGLLLQELSK----QGFS-DLTGVDYSEDAINLAQSLAN---RDGF------SCIKFLVDDVLDTKLE--- 228 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~----~g~~-~v~gvD~s~~~i~~a~~~~~---~~~~------~~i~~~~~D~~~~~~~--- 228 (343)
..|+-+|+|-|-+.....+ .+.. +|++|+-++.++...+.+.. .... ..|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999976444433 2433 89999999775545444421 2210 2489999999998532
Q ss_pred ---------CCccEEEECccccccccCCCChhhHHHHHHHHhhccCC----CcE
Q 019324 229 ---------RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP----GGL 269 (343)
Q Consensus 229 ---------~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 269 (343)
+++|+|++ ..|..++...-.+ ..|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSP----ECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSP----ECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCH----HHHHHHHHhhhhhcccccc
Confidence 26999997 2333333222222 355677777776 776
No 323
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.91 E-value=0.29 Score=39.04 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=39.1
Q ss_pred CCCCeEEEEccCcc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~ 238 (343)
.+..+|.|+|-|.= ..+..|.+.|+ .|+++|+.+. .+. ..+.++..|+.+..+ -...|+|++..
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~--------~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP--------EGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc--------cCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 34569999999875 46777777886 8999999988 111 267899999998764 25789999854
No 324
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.55 E-value=1.2 Score=34.48 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=59.5
Q ss_pred cCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEECccccccc
Q 019324 173 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 173 cG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~~~l~~i~ 244 (343)
||.|.++..+++. +...|+.+|.++..++.+++ ..+.++.+|..+... -...+.+++...-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~---- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------EGVEVIYGDATDPEVLERAGIEKADAVVILTDD---- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------TTSEEEES-TTSHHHHHHTTGGCESEEEEESSS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------cccccccccchhhhHHhhcCccccCEEEEccCC----
Confidence 5666677666654 33379999999999888876 357899999988642 2567777763211
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~ 283 (343)
......+....+.+.|...++.........+.+
T Consensus 73 ------d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l 105 (116)
T PF02254_consen 73 ------DEENLLIALLARELNPDIRIIARVNDPENAELL 105 (116)
T ss_dssp ------HHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 122233455567778888888766655444433
No 325
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.45 E-value=0.85 Score=40.57 Aligned_cols=92 Identities=26% Similarity=0.369 Sum_probs=59.0
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--------ccCCCcc
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--------KLERQFQ 232 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--------~~~~~fD 232 (343)
.++.+||..|+|. |..+..+++. | .+|++++.++...+.+++. +... ++ +.... ...+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~--~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADH--VI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCce--ec--cCCcCCHHHHHHHhcCCCCC
Confidence 5678999999985 6666666665 5 4899999998877777543 2111 11 11111 1135689
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
+++....- . ..+..+.+.|+++|.++.....
T Consensus 204 ~vi~~~~~----------~---~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 204 VVIDAVGG----------P---ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred EEEECCCC----------H---HHHHHHHHhcccCCEEEEEccC
Confidence 99864221 0 2347788899999999886543
No 326
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.36 E-value=0.57 Score=37.11 Aligned_cols=84 Identities=27% Similarity=0.342 Sum_probs=56.7
Q ss_pred CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCccEEEECcccccccc
Q 019324 174 GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQLVMDKGTLDAIGL 245 (343)
Q Consensus 174 G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~fD~V~~~~~l~~i~~ 245 (343)
|.|.++..+++. | .+|+++|.++.-++.+++. |.. .++..+-.+.. ....+|+|+..-.-
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc--ccccccccccccccccccccccceEEEEecCc-----
Confidence 568888888887 7 6999999999998888763 211 12222111110 12479999874321
Q ss_pred CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 246 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
...++...++|+|+|.+++.....
T Consensus 69 --------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 --------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --------HHHHHHHHHHhccCCEEEEEEccC
Confidence 135688999999999999976654
No 327
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.08 E-value=1.4 Score=42.02 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=74.5
Q ss_pred cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHH-------HHcCC--CceEEEEccCCCCcc----
Q 019324 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKL---- 227 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~-------~~~~~--~~i~~~~~D~~~~~~---- 227 (343)
+.++....|+|.|.|.+...++.. ++..-.|+++....-+.+..+. ...|- ..++.+++++.....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 367889999999999998888776 4557889988877666665433 23332 247888888877542
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
....++|+.+.+. + + .+...-+.++..-+++|-+++-..+-.
T Consensus 270 ~~eatvi~vNN~~--F--d----p~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 270 QTEATVIFVNNVA--F--D----PELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred hhcceEEEEeccc--C--C----HHHHHhhHHHHhhCCCcceEecccccc
Confidence 4578888887653 1 1 122223468888899999988754433
No 328
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.01 E-value=5.4 Score=36.57 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCCh-HHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~-~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.+++++|-.|++.| .++..++++|+ +|+.++.++ ...+.........+ .++.++.+|+.+...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 44678999987665 35556667786 788888764 33333333444334 368889999887531
Q ss_pred CCCccEEEECcccccc--ccCCCCh-----------hhHHHHHHHHhhccCCCcEEEEEe
Q 019324 228 ERQFQLVMDKGTLDAI--GLHPDGP-----------LKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i--~~~~~~~-----------~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
-+.+|+++.+...... .+..... .....+++.+.+.++++|.+++.+
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1368988876543211 0111111 122345566677777778777754
No 329
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.74 E-value=0.7 Score=42.14 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC----CCCccCCCccEEEE
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV----LDTKLERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~----~~~~~~~~fD~V~~ 236 (343)
.++.+||-+|+| .|.++..+++. |...|+++|.++.-.+.+++. |...+ +...+. ........+|+|+.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATAL-AEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEe-cCchhhHHHHHHHhCCCCCCEEEE
Confidence 467899999875 33444555554 664599999998888777652 32110 100110 01111235888886
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
...- ...++.+.++|+++|++++..
T Consensus 194 ~~G~-------------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 194 FSGA-------------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCC-------------hHHHHHHHHHhcCCCEEEEec
Confidence 3211 123477889999999998865
No 330
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.70 E-value=2.6 Score=39.42 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=56.3
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~ 239 (343)
..++.+||-.|+| .|.++..+++. |. +|++++.++.-.+.+++ .|...+ + |..+. ..+.+|+++....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~v--i--~~~~~-~~~~~d~~i~~~~ 232 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAASA--G--GAYDT-PPEPLDAAILFAP 232 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCcee--c--ccccc-CcccceEEEECCC
Confidence 3668899999975 33445555555 65 69999999888777765 333211 1 11111 1235787654221
Q ss_pred ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
. . ..+....+.|++||++++...
T Consensus 233 ~----------~---~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 A----------G---GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred c----------H---HHHHHHHHhhCCCcEEEEEec
Confidence 1 1 245788899999999988553
No 331
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.60 E-value=0.65 Score=43.92 Aligned_cols=46 Identities=28% Similarity=0.433 Sum_probs=38.2
Q ss_pred hccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHH
Q 019324 160 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (343)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~ 206 (343)
....+-..|.|+|.|.|.++..+.-+ |. .|+|||-|....+.|++.
T Consensus 149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 149 SDFTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HhhcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence 34466789999999999999999876 43 899999998888887753
No 332
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.38 E-value=7.1 Score=34.93 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|++.| .++..|++.|+ +|+.++.++..++...+.. + .++.++.+|+.+... -+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3568898887555 34556666787 8999999876554443322 2 368889999987631 14
Q ss_pred CccEEEECcc
Q 019324 230 QFQLVMDKGT 239 (343)
Q Consensus 230 ~fD~V~~~~~ 239 (343)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6899988754
No 333
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.05 E-value=2 Score=42.88 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCCCeEEEEccCcc-HHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----------------
Q 019324 163 LSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---------------- 224 (343)
Q Consensus 163 ~~~~~VLDiGcG~G-~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~---------------- 224 (343)
.++.+||-+|||.= ..+..++.. |+ .|+++|.++..++.++. .| .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lG---a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MG---AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC---CeEEeccccccccccccceeecCHHH
Confidence 46789999999864 444444444 65 69999999998777765 22 2333333211
Q ss_pred -------Cc-cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324 225 -------TK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 225 -------~~-~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii 272 (343)
.. .-..+|+|+....+..- ..+..+.+++.+.+|||+.++-
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~-------~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGK-------PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCC-------CCCeeehHHHHhhCCCCCEEEE
Confidence 00 02469999875432211 1112244778899999988764
No 334
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.99 E-value=6.9 Score=35.50 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=52.4
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|++.| .++..|++.|+ +|+.++.++..++.+.+.+...+. ++.++.+|+.+... -+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3568888888765 34556666787 799999998777666555544442 68889999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+..+
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999987654
No 335
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=88.88 E-value=0.82 Score=45.84 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQF 231 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~f 231 (343)
.+...|||+||..|.++.-.++. +. .-|+|+|+-|- ..+++|..++.|++.... .-+.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 56789999999999999988876 32 37999999653 122577777777765421 2356
Q ss_pred cEEEECccccccccCC--C---ChhhHHHHHHHHhhccCCCcEEEEEe-cCCChHHHHHHH
Q 019324 232 QLVMDKGTLDAIGLHP--D---GPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEV 286 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~--~---~~~~~~~~l~~~~~~LkpgG~lii~~-~~~~~~~~~~~~ 286 (343)
|+|+..+.-. ++..+ + ........++-+...|+.||.++--. .+.....++..+
T Consensus 112 dvVLhDgapn-Vg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~ 171 (780)
T KOG1098|consen 112 DVVLHDGAPN-VGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVF 171 (780)
T ss_pred cEEeecCCCc-cchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHH
Confidence 8888754321 11000 0 01222345677788899999966633 333344444433
No 336
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.86 E-value=4.7 Score=33.95 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=63.2
Q ss_pred EccCccHHHHHHHhc-C-CCcEEEEeCChHH--HHHH---HHHHHHcCCCceE-EEEccCCCCcc-----CCCccEEEEC
Q 019324 171 IGTGNGLLLQELSKQ-G-FSDLTGVDYSEDA--INLA---QSLANRDGFSCIK-FLVDDVLDTKL-----ERQFQLVMDK 237 (343)
Q Consensus 171 iGcG~G~~~~~la~~-g-~~~v~gvD~s~~~--i~~a---~~~~~~~~~~~i~-~~~~D~~~~~~-----~~~fD~V~~~ 237 (343)
+|=|+=.++..|++. + ...++++-++... .+.. ..++......++. ..-.|++++.. ...||.|+-|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 455555666677766 4 3477777666442 2222 2333332212232 34457766542 4789999988
Q ss_pred ccccccccCCC--------ChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324 238 GTLDAIGLHPD--------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279 (343)
Q Consensus 238 ~~l~~i~~~~~--------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~ 279 (343)
.+- +..... ...-+..++..+.++|+++|.+.++......
T Consensus 83 FPH--~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 83 FPH--VGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCC--CCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 653 321110 0123457889999999999999998877755
No 337
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.66 E-value=7 Score=36.70 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=53.4
Q ss_pred CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.+++||-.|++.|. ++..+++.|+ +|+.++-++..++...+.+...+. ++.++.+|+.+... -+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45688888876552 4455666786 799999998887777666655553 68889999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
.+|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78999987643
No 338
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.59 E-value=3.8 Score=38.72 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=57.9
Q ss_pred cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCC----CccCCCccEE
Q 019324 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~----~~~~~~fD~V 234 (343)
..++.+||-.|||. |..+..+++. |...|+++|.++.-.+.+++ .|.+. +.....+..+ ......+|+|
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 46788999998752 4455556665 66469999999998888864 23211 1111111110 0112358888
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+....- . ..+....+.|++||++++...
T Consensus 250 id~~g~----------~---~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 250 IDAVGR----------P---ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EECCCC----------H---HHHHHHHHHhccCCEEEEECC
Confidence 863211 1 234677889999999987643
No 339
>PRK12939 short chain dehydrogenase; Provisional
Probab=88.51 E-value=7 Score=34.38 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=48.5
Q ss_pred CCCeEEEEccCccHHHH----HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~----~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
+++++|-.|++ |.++. .++++|+ +|++++-++..+....+.....+ .++.++.+|+.+... -
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788877764 44444 4455676 79999988877666655554433 368899999987531 1
Q ss_pred CCccEEEECcc
Q 019324 229 RQFQLVMDKGT 239 (343)
Q Consensus 229 ~~fD~V~~~~~ 239 (343)
+..|+|+.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46898887653
No 340
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.45 E-value=11 Score=33.76 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=47.4
Q ss_pred CCCCeEEEEccCcc-H----HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324 163 LSSWSVLDIGTGNG-L----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G-~----~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------- 227 (343)
..++++|-.|+++| . ++..+++.|+ +|+.++.+....+.+++.....+ .+.++.+|+.+...
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHH
Confidence 34678999998752 3 4555666676 78888888654433333332222 34578889887531
Q ss_pred -CCCccEEEECccc
Q 019324 228 -ERQFQLVMDKGTL 240 (343)
Q Consensus 228 -~~~fD~V~~~~~l 240 (343)
-+..|+++.+..+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 2578999987644
No 341
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.37 E-value=2.9 Score=40.66 Aligned_cols=88 Identities=8% Similarity=0.065 Sum_probs=55.0
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
.++++|+-+|||. |.....+++. |. +|+.+|.++.-...|+. .|. ... +..+ .-...|+|+....-
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e--~v~~aDVVI~atG~ 267 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY---EVM--TMEE--AVKEGDIFVTTTGN 267 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC---EEc--cHHH--HHcCCCEEEECCCC
Confidence 5789999999996 4444434443 76 79999999887777664 332 111 1111 11357988863211
Q ss_pred cccccCCCChhhHHHHHH-HHhhccCCCcEEEEEec
Q 019324 241 DAIGLHPDGPLKRIMYWD-SVSKLVAPGGLLVITSC 275 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~-~~~~~LkpgG~lii~~~ 275 (343)
. ..+. ...+.+|+||+++....
T Consensus 268 ----------~---~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 268 ----------K---DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ----------H---HHHHHHHHhcCCCCcEEEEeCC
Confidence 1 1233 45889999999987653
No 342
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.25 E-value=3.6 Score=38.81 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=59.2
Q ss_pred cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEc-cCCCC---ccCCCccE
Q 019324 162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQFQL 233 (343)
Q Consensus 162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~-D~~~~---~~~~~fD~ 233 (343)
..++.+||-.|+ |.|.++..+++. |. +|++++.++.-.+.+++. .|... +..... ++.+. ...+.+|+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 367889999998 477788878776 65 799999998877776532 23221 111101 11110 01235888
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|+.... . ..+....++|++||++++..
T Consensus 232 v~d~vG-----------~---~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 232 YFDNVG-----------G---DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEECCC-----------H---HHHHHHHHHhccCCEEEEEC
Confidence 886321 1 24478889999999998753
No 343
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=87.99 E-value=0.92 Score=41.95 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=50.1
Q ss_pred EEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCC--------CccCCCccEEEE
Q 019324 168 VLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD--------TKLERQFQLVMD 236 (343)
Q Consensus 168 VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~--------~~~~~~fD~V~~ 236 (343)
=+|||.|...+--.+-.. ++ ...++|++...+..|+.+...+++. .+.+++....+ ...+..||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 368888876554444322 33 7999999999999999999988873 46665553322 112346999999
Q ss_pred Cccc
Q 019324 237 KGTL 240 (343)
Q Consensus 237 ~~~l 240 (343)
|..+
T Consensus 185 NPPF 188 (419)
T KOG2912|consen 185 NPPF 188 (419)
T ss_pred CCch
Confidence 9765
No 344
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.99 E-value=9.2 Score=34.69 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCeEEEEccCccHHHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHHHcCC---CceEEEEccCCCCc--------c-CCCc
Q 019324 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGF---SCIKFLVDDVLDTK--------L-ERQF 231 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~--------~-~~~f 231 (343)
...|+.+|||-=.-...+... . .+.-+|++ |.+++.-++.+...+. .+..++..|+.... + ....
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 346999999987766666433 2 34445554 4455555555554332 37889999987211 1 1234
Q ss_pred cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
-++++-+++.++. ......+++.+.+...||+.+++...+.
T Consensus 160 tl~i~EGvl~YL~-----~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 160 TAWLWEGLLMYLT-----EEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeeeecchhhcCC-----HHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 5788888887773 4566788899998888999999976554
No 345
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.95 E-value=4.3 Score=36.48 Aligned_cols=93 Identities=23% Similarity=0.251 Sum_probs=55.9
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l 240 (343)
.++.+||-.|||. |..+..+++. |..+|++++.++...+.+++.-. ...+..... .......+|+|+.....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~---~~~~~~~~~---~~~~~~~~d~vl~~~~~ 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGP---ADPVAADTA---DEIGGRGADVVIEASGS 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCC---Cccccccch---hhhcCCCCCEEEEccCC
Confidence 5678899888764 5556666665 65349999999888876665310 111110000 01123468888863211
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
. ..+....+.|+++|.++...
T Consensus 170 ----------~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 ----------P---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ----------h---HHHHHHHHHhcCCcEEEEEe
Confidence 0 23477888999999998754
No 346
>PRK13699 putative methylase; Provisional
Probab=87.91 E-value=1.4 Score=39.19 Aligned_cols=72 Identities=10% Similarity=0.137 Sum_probs=43.7
Q ss_pred eEEEEccCCCC---ccCCCccEEEECccccccccC--------CCC-hhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324 215 IKFLVDDVLDT---KLERQFQLVMDKGTLDAIGLH--------PDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 282 (343)
Q Consensus 215 i~~~~~D~~~~---~~~~~fD~V~~~~~l~~i~~~--------~~~-~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~ 282 (343)
++++++|+.+. -+++++|+|+....... ... .+. ..-....+.+++|+|||||.+++.........+
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~ 80 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLV-GFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRF 80 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCccc-ccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHH
Confidence 35677887664 23689999998876631 100 010 112347789999999999988864433333444
Q ss_pred HHHHH
Q 019324 283 VHEVS 287 (343)
Q Consensus 283 ~~~~~ 287 (343)
...++
T Consensus 81 ~~al~ 85 (227)
T PRK13699 81 MAAWK 85 (227)
T ss_pred HHHHH
Confidence 44443
No 347
>PRK11524 putative methyltransferase; Provisional
Probab=87.83 E-value=1.2 Score=40.86 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=41.1
Q ss_pred ceEEEEccCCCCc---cCCCccEEEECccccccc-c-CC-C--Ch----hhHHHHHHHHhhccCCCcEEEEEec
Q 019324 214 CIKFLVDDVLDTK---LERQFQLVMDKGTLDAIG-L-HP-D--GP----LKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 214 ~i~~~~~D~~~~~---~~~~fD~V~~~~~l~~i~-~-~~-~--~~----~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+..++++|+.+.. .+++||+|+++..+..-. . .. + .. .-...++.++.++|||||.+++...
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4578889988742 367999999987763210 0 00 0 00 1124688999999999999998633
No 348
>PRK06194 hypothetical protein; Provisional
Probab=87.60 E-value=9.1 Score=34.63 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=49.9
Q ss_pred CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324 165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (343)
Q Consensus 165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~ 230 (343)
+++||-.|++.| .++..|+++|+ +|+.+|.++..++...+.....+ .++.++.+|+.+... .+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 568887776544 24445666676 79999998777666555444434 268889999987531 135
Q ss_pred ccEEEECccc
Q 019324 231 FQLVMDKGTL 240 (343)
Q Consensus 231 fD~V~~~~~l 240 (343)
.|+|+.+...
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 7999987654
No 349
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.58 E-value=12 Score=33.22 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
..+++||-.|+..| .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+... -
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 34678998886433 23444555676 79999999887766666555444 268889999987531 1
Q ss_pred CCccEEEECccc
Q 019324 229 RQFQLVMDKGTL 240 (343)
Q Consensus 229 ~~fD~V~~~~~l 240 (343)
+..|+++.+...
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 468998887543
No 350
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.42 E-value=1.1 Score=42.73 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=57.7
Q ss_pred cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCC-c--cCCCccEEE
Q 019324 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT-K--LERQFQLVM 235 (343)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~-~--~~~~fD~V~ 235 (343)
..++.+||-.|+|. |.++..+++. |...|+++|.++.-.+.+++ .|... +.....|..+. . ..+.+|+|+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 35678899998752 4455555555 66579999999998888865 23211 11111111100 0 123688888
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
....- ...+....++|+++|.+++...
T Consensus 265 d~~G~-------------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 265 EMAGS-------------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ECCCC-------------hHHHHHHHHHHhcCCEEEEEcc
Confidence 63211 0234777889999999887543
No 351
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.34 E-value=2.3 Score=39.67 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=57.4
Q ss_pred CCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCCCcc-CCCccEEEEC
Q 019324 164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDTKL-ERQFQLVMDK 237 (343)
Q Consensus 164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~~~~-~~~fD~V~~~ 237 (343)
++.+||-.|||. |..+..+++. |...+++++.++...+.+++. +.. .++.. ++..... .+.+|+++..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~--~vi~~~~~~~~~~~~~~~~vd~vld~ 238 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD--ETVNLARDPLAAYAADKGDFDVVFEA 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC--EEEcCCchhhhhhhccCCCccEEEEC
Confidence 678899988875 5666666665 654799999998888866552 221 11111 1111111 2358988864
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
... ...++.+.+.|+++|+++...
T Consensus 239 ~g~-------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 239 SGA-------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCC-------------HHHHHHHHHHHhcCCEEEEEe
Confidence 221 123478889999999998754
No 352
>PRK08589 short chain dehydrogenase; Validated
Probab=87.32 E-value=13 Score=33.59 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+++++|-.|++.| .++..|++.|+ +|+.++.+ ..++...+.+...+ .++.++.+|+.+... -+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4668998888766 34556777786 89999998 44444443343333 268889999887531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+..+
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999987644
No 353
>PRK08324 short chain dehydrogenase; Validated
Probab=87.13 E-value=6.6 Score=40.83 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++++||-.|++.| .++..+++.|+ +|+.+|.++..++.+.+.+... .++.++.+|+.+... -+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578998887444 23445556676 8999999988776665544322 368889999887531 14
Q ss_pred CccEEEECccccccc-cCCCChh-----------hHHHHHHHHhhccCC---CcEEEEEe
Q 019324 230 QFQLVMDKGTLDAIG-LHPDGPL-----------KRIMYWDSVSKLVAP---GGLLVITS 274 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~-~~~~~~~-----------~~~~~l~~~~~~Lkp---gG~lii~~ 274 (343)
.+|+|+.+....... +...... ....+++.+.+.+++ ||.+++.+
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 689999876432110 0000111 123455666777766 67777643
No 354
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.00 E-value=3.6 Score=38.41 Aligned_cols=96 Identities=26% Similarity=0.279 Sum_probs=55.8
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEcc---CCCCccCCCccEEEE
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD---VLDTKLERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D---~~~~~~~~~fD~V~~ 236 (343)
.++.+||-+|+| .|.++..+++. |...|++++.++.-.+.+++. |... +.....+ +.+......+|+|+.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 568899999874 23344455554 663499999998887777542 3211 1111111 001111236899986
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
...- . ..+....+.|+++|.+++...
T Consensus 238 ~~g~----------~---~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 238 CSGN----------T---AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCC----------H---HHHHHHHHHhhcCCEEEEEcC
Confidence 3211 1 233677889999999987543
No 355
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=86.99 E-value=10 Score=33.64 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=51.1
Q ss_pred CCCCeEEEEccCccHHHH----HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 163 LSSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~----~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.+++++|-.|+ +|.++. .|+++|+ +|+.++-++..++...+.....+ .++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34678999985 444444 4455576 89999999877776666554444 367889999987531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
.+..|.|+.+...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1468999887543
No 356
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.92 E-value=10 Score=33.98 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=48.5
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
.+++++|-.|.+.| .+...++..|+ .|++++.++..++...+.....+ .++.++.+|+.+... .
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34678888886433 23444555676 79999998877665555444433 257788999886431 1
Q ss_pred CCccEEEECc
Q 019324 229 RQFQLVMDKG 238 (343)
Q Consensus 229 ~~fD~V~~~~ 238 (343)
+.+|+++.+.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3679998764
No 357
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.91 E-value=6.2 Score=36.53 Aligned_cols=95 Identities=25% Similarity=0.320 Sum_probs=57.6
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-----CccCCCccEE
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----TKLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~V 234 (343)
..++.+||-+|+| .|..+..+++. |...+++++-++...+.+++. +.. .++..+-.. ......+|++
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCcEE
Confidence 3567899999865 35555556655 653489999998888777542 221 122211111 0123568999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+....- ...+..+.++|+++|+++....
T Consensus 231 ~~~~~~-------------~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 231 IEATGV-------------PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EECCCC-------------hHHHHHHHHHHhcCCEEEEEec
Confidence 864211 1244778899999999987543
No 358
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.61 E-value=11 Score=33.22 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=59.7
Q ss_pred CCCeEEEEccCcc--H-HHHHHHhcCCCcEEEEeCCh-HHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C------
Q 019324 164 SSWSVLDIGTGNG--L-LLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------ 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G--~-~~~~la~~g~~~v~gvD~s~-~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~------ 228 (343)
+++++|-.|+..| . +...|++.|+ +|++++.+. ...+.....+...+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3568998887443 2 3444555676 788887654 23333333333333 367889999987531 1
Q ss_pred CCccEEEECccccccc-cCCC-----ChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 229 RQFQLVMDKGTLDAIG-LHPD-----GPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~-~~~~-----~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+..|+++.+....... ..+. ...-...+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 3689888665321110 0000 0112335667777777666766664
No 359
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.54 E-value=5.5 Score=36.83 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=57.1
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~ 238 (343)
.++.+||-.||| .|..+..+++. |. +|++++-++...+.+++. +... ++...-.... ..+.+|+++...
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GADE--VVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCcE--EeccCCcchHHhccCCCCEEEECC
Confidence 567889999986 66666666666 65 799999999888777542 2111 1111000000 124588888631
Q ss_pred cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
.- . ..+..+.+.|+++|.++...
T Consensus 234 ~~----------~---~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 VS----------G---AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred Cc----------H---HHHHHHHHhcccCCEEEEEC
Confidence 10 0 23477889999999998764
No 360
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.40 E-value=3.6 Score=37.84 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=62.3
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
..+..||-=|.|.| .++..++++|+ .+...|+++...+...+.....| ++....+|+.+... -
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 56789999999998 46888888887 89999999999988888887766 79999999998641 3
Q ss_pred CCccEEEECccc
Q 019324 229 RQFQLVMDKGTL 240 (343)
Q Consensus 229 ~~fD~V~~~~~l 240 (343)
+..|+++.|..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 689999988754
No 361
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.11 E-value=1.9 Score=44.61 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=62.4
Q ss_pred CCCCeEEEEccCccHHHHHHHh-------c-C-----CCcEEEEeCChHHHHHHHH--------------HHHH-----c
Q 019324 163 LSSWSVLDIGTGNGLLLQELSK-------Q-G-----FSDLTGVDYSEDAINLAQS--------------LANR-----D 210 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~-------~-g-----~~~v~gvD~s~~~i~~a~~--------------~~~~-----~ 210 (343)
.+.-+|||+|-|+|.......+ . . .-+++++|..|-..+..++ .... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3457999999999975444431 1 1 1178999975532222222 1111 1
Q ss_pred CCC---------ceEEEEccCCCCc--cCCCccEEEECccccccccCCCChhhH--HHHHHHHhhccCCCcEEEEEec
Q 019324 211 GFS---------CIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKR--IMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 211 ~~~---------~i~~~~~D~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~--~~~l~~~~~~LkpgG~lii~~~ 275 (343)
|+. ++++..+|+.+.. +...+|+++..+. .|....++ ..+++.+.++++|||++.--+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F------sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF------APAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC------CCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 210 3556777876542 2356899996542 22221222 4688999999999999886443
No 362
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.03 E-value=16 Score=32.38 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+++++|-.|+..| .+...|+++|+ +|+.++.++...+.+.+.+...+ .++.++.+|+.+... .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3568887777443 34555666677 79999999877776666555444 367889999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+|+.+...
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 58988876543
No 363
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.89 E-value=13 Score=35.68 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCCCeEEEEccCccH----HHHHHHhc--CC-C-cEEEEeC----ChHHHHHHHHHHH----HcCCCceEEEEc---cCC
Q 019324 163 LSSWSVLDIGTGNGL----LLQELSKQ--GF-S-DLTGVDY----SEDAINLAQSLAN----RDGFSCIKFLVD---DVL 223 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~----~~~~la~~--g~-~-~v~gvD~----s~~~i~~a~~~~~----~~~~~~i~~~~~---D~~ 223 (343)
.+.-.|+|+|.|.|. +...|+.+ |. . ++||++. +...++.+.+++. ..|+ ..+|... ++.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~v~~~~~e 187 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHPVVVESLE 187 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEecccCchh
Confidence 466799999999994 55666665 22 2 8999999 7788887777654 3454 3444442 333
Q ss_pred CCcc------CCCccEEEECccccccccCCCChhh-HHHHHHHHhhccCCCcEEEE
Q 019324 224 DTKL------ERQFQLVMDKGTLDAIGLHPDGPLK-RIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 224 ~~~~------~~~fD~V~~~~~l~~i~~~~~~~~~-~~~~l~~~~~~LkpgG~lii 272 (343)
+... ++..=+|-+...++++.-++..... +..+|+ ..+.|+|.-.+++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEE
Confidence 3221 2222223344455666422222222 334554 4557799966666
No 364
>PRK05650 short chain dehydrogenase; Provisional
Probab=85.78 E-value=17 Score=32.60 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=48.6
Q ss_pred eEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCcc
Q 019324 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ 232 (343)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~fD 232 (343)
+||-.|+..|. ++..|++.|. +|+.++.+....+.+...+...+ .++.++.+|+.+... -+.+|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 57777765542 4555666676 79999998877666655554444 368889999987531 14689
Q ss_pred EEEECccc
Q 019324 233 LVMDKGTL 240 (343)
Q Consensus 233 ~V~~~~~l 240 (343)
+++.+...
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99987543
No 365
>PRK09242 tropinone reductase; Provisional
Probab=85.75 E-value=16 Score=32.32 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCcc-----------C
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~-----------~ 228 (343)
.++++|-.|++.| .++..+++.|+ +|+.++.++..++...+.+... +-.++.++.+|+.+... -
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678999998655 34556666786 7999999887776666555433 11268888999887421 2
Q ss_pred CCccEEEECccc
Q 019324 229 RQFQLVMDKGTL 240 (343)
Q Consensus 229 ~~fD~V~~~~~l 240 (343)
+.+|+++.+...
T Consensus 87 g~id~li~~ag~ 98 (257)
T PRK09242 87 DGLHILVNNAGG 98 (257)
T ss_pred CCCCEEEECCCC
Confidence 468998876643
No 366
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.65 E-value=6.6 Score=36.37 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=58.6
Q ss_pred cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEc-cCCCC---ccCCCccE
Q 019324 162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVD-DVLDT---KLERQFQL 233 (343)
Q Consensus 162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~-D~~~~---~~~~~fD~ 233 (343)
..++.+||-.|. |.|.++..+++. |. +|++++-++.-.+.+++ .|...+ ..... +..+. ...+.+|+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence 366889998884 577777778776 65 79999999887777754 233211 11110 11110 01246888
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|+.... . ..+....++|+++|+++...
T Consensus 211 v~d~~G-----------~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNVG-----------G---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECCC-----------H---HHHHHHHHHhCcCcEEEEec
Confidence 886311 1 13477889999999999753
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.62 E-value=6.2 Score=36.22 Aligned_cols=108 Identities=13% Similarity=0.172 Sum_probs=62.2
Q ss_pred eEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-------C-C---------CceEEEEccCCCCcc
Q 019324 167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTKL 227 (343)
Q Consensus 167 ~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-------~-~---------~~i~~~~~D~~~~~~ 227 (343)
+|.=||+|. +.++..++..|+ +|+.+|.++..++.+.++.... + + .++.+ ..|..+ .
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--A 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH--h
Confidence 678888874 235556666676 8999999999999887643211 1 0 01221 122211 1
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
-...|+|+..-. +.......++.++.+.++|+.++...+.......+....
T Consensus 79 ~~~aD~Vi~avp--------e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~ 129 (288)
T PRK09260 79 VADADLVIEAVP--------EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFT 129 (288)
T ss_pred hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 235688885311 222233456778888888987766655555555544433
No 368
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.43 E-value=1.8 Score=40.69 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=54.3
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEcc---CCCCccCCCcc-EEE
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD---VLDTKLERQFQ-LVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D---~~~~~~~~~fD-~V~ 235 (343)
.++.+||-.|||. |.++..+++. |...|++++.++.-.+.+++ .|... +.....+ +.+......+| +|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 5678999998743 3344455554 66458999999988877754 23211 1111111 00111123567 665
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
....- ...+....+.|++||.+++..
T Consensus 235 d~~G~-------------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 235 ETAGV-------------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred ECCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 42111 124578889999999998864
No 369
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.36 E-value=1.3 Score=38.94 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=52.0
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~ 226 (343)
..+.-|.+||.|.|.++..+.+.|..++..++.+...+.-.+...+... .+..+..+|+....
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK 111 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence 4567899999999999999999988899999999999888877666444 26778888887653
No 370
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=85.14 E-value=19 Score=31.78 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|++.| .++..|++.|+ +|+.++.++..+....+.....+ .++.++.+|+.+... -+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 4678998887655 34556666676 89999998777666655554433 267788899887531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
.+|+++.+...
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 371
>PRK09072 short chain dehydrogenase; Provisional
Probab=85.06 E-value=17 Score=32.37 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------CCC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ 230 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~~~ 230 (343)
++.++|-.|++.| .++..++++|+ +|++++.++..++...... ..+ .++.++.+|+.+... -+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 3568898888765 35566677786 7999999987776665544 222 378899999987531 146
Q ss_pred ccEEEECccc
Q 019324 231 FQLVMDKGTL 240 (343)
Q Consensus 231 fD~V~~~~~l 240 (343)
.|.++.+...
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999887543
No 372
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.98 E-value=6.9 Score=35.76 Aligned_cols=100 Identities=21% Similarity=0.217 Sum_probs=58.6
Q ss_pred eEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324 167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 167 ~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~ 244 (343)
+|.=||+|. |.++..|.+.|. +|+++|.++..++.+.+. +. +.....+.. .-...|+|+..-..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~~---~~~~aDlVilavp~---- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL--VDEASTDLS---LLKDCDLVILALPI---- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC--cccccCCHh---HhcCCCEEEEcCCH----
Confidence 466788875 456666667775 899999999888777642 21 111111111 12457888864332
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 288 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~ 288 (343)
.....+++++...++++. ++ +.....+....+.+..
T Consensus 68 ------~~~~~~~~~l~~~l~~~~-ii-~d~~Svk~~~~~~~~~ 103 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEA-IV-TDVGSVKAPIVEAWEK 103 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCc-EE-EeCcchHHHHHHHHHH
Confidence 233456688888887774 33 4344455555555543
No 373
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.91 E-value=1.9 Score=40.60 Aligned_cols=96 Identities=24% Similarity=0.296 Sum_probs=62.6
Q ss_pred cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc----cCCCccE
Q 019324 162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----LERQFQL 233 (343)
Q Consensus 162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~----~~~~fD~ 233 (343)
+.++.+||-.|. |.|.++..|++. |+ .++++--++.-.+.+++. |.+ -+.+...|+.+.. ....+|+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 366889999985 567888888887 65 777887777666655543 322 2333344433221 1346999
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~ 276 (343)
|++.-.- ..+.+..+.|+++|.++.....
T Consensus 215 v~D~vG~--------------~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 215 VLDTVGG--------------DTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred EEECCCH--------------HHHHHHHHHhccCCEEEEEecC
Confidence 9974322 2347788999999999886543
No 374
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.87 E-value=5.8 Score=34.93 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=47.2
Q ss_pred CeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------CCCccEE
Q 019324 166 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQLV 234 (343)
Q Consensus 166 ~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------~~~fD~V 234 (343)
++||-.|+..| .++..+++.|+ +|++++.++...+...+.....+..++.++.+|+.+... ...+|++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 36888886544 23445556676 799999998766554444333322478999999987631 2357988
Q ss_pred EECc
Q 019324 235 MDKG 238 (343)
Q Consensus 235 ~~~~ 238 (343)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8754
No 375
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.76 E-value=7.3 Score=36.31 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=56.2
Q ss_pred CeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCCC---ccCCCccEEEE
Q 019324 166 WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDT---KLERQFQLVMD 236 (343)
Q Consensus 166 ~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~~---~~~~~fD~V~~ 236 (343)
.+||-.|+ |.|..+..+++. |..+|++++-++...+.+++.+ |.+. ++.. ++.+. ...+.+|+|+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~--vi~~~~~~~~~~i~~~~~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDA--AINYKTDNVAERLRELCPEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcE--EEECCCCCHHHHHHHHCCCCceEEEE
Confidence 78998886 567777777776 6546999999988777776532 3321 1111 11100 01246888886
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
...- ..+....++|+++|+++...
T Consensus 231 ~~g~--------------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 231 NVGG--------------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred CCCc--------------HHHHHHHHHhccCCEEEEEe
Confidence 3111 12367888999999998743
No 376
>PRK06181 short chain dehydrogenase; Provisional
Probab=84.35 E-value=22 Score=31.54 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=47.1
Q ss_pred CeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCc
Q 019324 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 231 (343)
Q Consensus 166 ~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~f 231 (343)
.+||-.|+..|. ++..+++.|+ +|++++.++...+...+.....+ .++.++.+|+.+... -+..
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 367877764431 3334555676 89999999877666555554444 368889999987531 1368
Q ss_pred cEEEECcc
Q 019324 232 QLVMDKGT 239 (343)
Q Consensus 232 D~V~~~~~ 239 (343)
|+|+.+..
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 99987654
No 377
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.30 E-value=6.4 Score=35.71 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcC------CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g------~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~ 227 (343)
.++..++|+|||.|.++.+++..- ...++.||-...-.+.=+ .+..... +.+.=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccch
Confidence 457799999999999999988752 237899998653332222 2222210 235555666666543
No 378
>PRK12937 short chain dehydrogenase; Provisional
Probab=84.07 E-value=22 Score=31.06 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
++++||-.|++.| .++..|+++|+ +++.+.-+ +...+...+.....+ .++.++..|+.+... -
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678999998544 24555666676 56665543 333333333333333 368899999887531 1
Q ss_pred CCccEEEECcccccc-ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEec
Q 019324 229 RQFQLVMDKGTLDAI-GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i-~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+..|+++.+...... .+......+. ..+++.+.+.++++|.+++.+.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 468998886543211 0011111111 2344566667777888777543
No 379
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.01 E-value=2 Score=40.18 Aligned_cols=96 Identities=23% Similarity=0.304 Sum_probs=56.5
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccC----CCCccCCCccEE
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV----LDTKLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~----~~~~~~~~fD~V 234 (343)
..++.+||..|+| .|..+..+++. |...+++++.++...+.+++. +... +.....+. ......+.+|++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~v 240 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDCV 240 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence 3567889887765 35666666665 544788998888777766642 2111 11111111 111112568988
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+....- ...+....+.|+++|+++...
T Consensus 241 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 241 IEAVGF-------------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEccCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 863211 024578889999999988653
No 380
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.94 E-value=28 Score=31.56 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=61.8
Q ss_pred CCCeEEEEccC----cc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTG----NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG----~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|++ -| .++..+++.|+ +|+.++.+....+.+++.....+. . .++.+|+.+...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 36789999985 23 24555666787 788888885433333333333332 3 567889987631
Q ss_pred CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324 228 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~ 274 (343)
-+.+|+++.+..+..- .+......+. ..+.+.+...++.+|.++..+
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 2578999988654210 0011111111 234466677777778776643
No 381
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=83.92 E-value=7.5 Score=36.56 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=32.8
Q ss_pred cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHH
Q 019324 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (343)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~ 205 (343)
..++.+||-.|||. |..+..+++. |. +|+++|.++.-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 36688999999954 5555666665 66 79999999998887765
No 382
>PRK06128 oxidoreductase; Provisional
Probab=83.63 E-value=21 Score=32.76 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=62.2
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChH--HHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED--AINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~--~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.+++||-.|++.| .++..|++.|+ +|+.+..+.. ..+...+.+...+ .++.++.+|+.+...
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999997555 24555666676 6777665432 2333333333334 367888999987531
Q ss_pred CCCccEEEECccccccc--cCCCChhh-----------HHHHHHHHhhccCCCcEEEEE
Q 019324 228 ERQFQLVMDKGTLDAIG--LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~--~~~~~~~~-----------~~~~l~~~~~~LkpgG~lii~ 273 (343)
-+..|+++.+....... +......+ ...+++.+.+.++++|.+++.
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 14689999876542110 01111111 124556677777888887774
No 383
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.54 E-value=25 Score=31.44 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=44.3
Q ss_pred CCCeEEEEccCc-cH----HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGN-GL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~-G~----~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|+++ +. ++..|++.|+ +|+.++.+....+..++......-.++.++++|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999862 33 3555566686 788776543222222222222211367788999987631
Q ss_pred CCCccEEEECcc
Q 019324 228 ERQFQLVMDKGT 239 (343)
Q Consensus 228 ~~~fD~V~~~~~ 239 (343)
-+.+|+++.+..
T Consensus 85 ~g~ld~lv~nag 96 (257)
T PRK08594 85 VGVIHGVAHCIA 96 (257)
T ss_pred CCCccEEEECcc
Confidence 257899887654
No 384
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.52 E-value=12 Score=34.47 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=60.0
Q ss_pred CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc----------CC----------CceEEEEccCC
Q 019324 166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GF----------SCIKFLVDDVL 223 (343)
Q Consensus 166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~----------~~----------~~i~~~~~D~~ 223 (343)
.+|.-||||.= .++..++..|+ +|+.+|.++..++.+++..... +. .++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 46888999842 35556666776 8999999999998776543321 10 011111 1211
Q ss_pred CCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 224 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 224 ~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
.-...|+|+.. + ++.......+++++.+.++|+.+++..+......++..
T Consensus 82 ---~~~~aDlViea-----v---~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~ 131 (291)
T PRK06035 82 ---SLSDADFIVEA-----V---PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT 131 (291)
T ss_pred ---HhCCCCEEEEc-----C---cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh
Confidence 11346888763 2 12222345677888888888876543333333344444
No 385
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.31 E-value=3 Score=38.99 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=57.7
Q ss_pred ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEcc-------CCCCccCCC
Q 019324 161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDD-------VLDTKLERQ 230 (343)
Q Consensus 161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D-------~~~~~~~~~ 230 (343)
...++.+||-.|+|. |..+..+++. |...|++++-++...+.+++. +...+ .....+ +........
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCC
Confidence 346678888887754 5566666665 653399999888877777542 32111 111111 111111345
Q ss_pred ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+|+|+...... ..+....++|+++|.++...
T Consensus 235 ~d~vld~~g~~-------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 235 PDVVIECTGAE-------------SCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCEEEECCCCH-------------HHHHHHHHHhhcCCEEEEEc
Confidence 89998642211 13478889999999988754
No 386
>PLN02740 Alcohol dehydrogenase-like
Probab=83.31 E-value=6.1 Score=37.77 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=56.6
Q ss_pred ccCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-----CCCC--c-cCCC
Q 019324 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-----VLDT--K-LERQ 230 (343)
Q Consensus 161 ~~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-----~~~~--~-~~~~ 230 (343)
...++.+||-+||| .|.++..+++. |...|+++|.++.-++.+++ .|.+. ++... ..+. . ..+.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHhCCC
Confidence 44678899999875 23344455554 65479999999988888865 23211 22111 1110 0 1226
Q ss_pred ccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEe
Q 019324 231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS 274 (343)
Q Consensus 231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~ 274 (343)
+|+|+....- . ..+....+.+++| |++++..
T Consensus 269 ~dvvid~~G~----------~---~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 269 VDYSFECAGN----------V---EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCEEEECCCC----------h---HHHHHHHHhhhcCCCEEEEEc
Confidence 8988863221 1 2346777888886 8887754
No 387
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.30 E-value=4.2 Score=36.74 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=52.2
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~ 238 (343)
.++....|+|.-.|.++-.|.+++. .|+++|.-+-+-... .. ..++....|..++.+ ....|-.+|..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~-----dt--g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM-----DT--GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh-----cc--cceeeeeccCcccccCCCCCceEEeeh
Confidence 6788999999999999999999976 899999865433222 22 368888888888766 56778777753
No 388
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.07 E-value=25 Score=31.75 Aligned_cols=74 Identities=22% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
+++++|-.|++. | .++..|++.|+ +|+.++.+....+..++.....+ ...++++|+.+...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999865 4 35666777787 78888876544333333333333 23467889987531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+..|+++.+..+
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2578999987654
No 389
>PRK08226 short chain dehydrogenase; Provisional
Probab=83.04 E-value=27 Score=30.93 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=48.3
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|+..| .++..|+++|+ +|+.++.++...+.+++. ...+ .++.++.+|+.+... .+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~-~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADEL-CGRG-HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHH-HHhC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678898887654 24555566676 799999887654444333 2223 367889999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+...
T Consensus 82 ~id~vi~~ag~ 92 (263)
T PRK08226 82 RIDILVNNAGV 92 (263)
T ss_pred CCCEEEECCCc
Confidence 67999987654
No 390
>PRK07904 short chain dehydrogenase; Provisional
Probab=82.97 E-value=6.3 Score=35.25 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHH-HHHHHHHHHHcCCCceEEEEccCCCCcc----------C
Q 019324 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVDDVLDTKL----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~-i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~ 228 (343)
..+.+||-.||+.|. ++..++++|..+|+.++-++.. ++.+.+.+...+..++.++.+|+.+... .
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 456789999996552 3444555642389999888764 5555444444443478999999976531 1
Q ss_pred CCccEEEECc
Q 019324 229 RQFQLVMDKG 238 (343)
Q Consensus 229 ~~fD~V~~~~ 238 (343)
+..|+++.+.
T Consensus 86 g~id~li~~a 95 (253)
T PRK07904 86 GDVDVAIVAF 95 (253)
T ss_pred CCCCEEEEee
Confidence 4789887654
No 391
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.89 E-value=17 Score=33.58 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred CCCeEEEEccCccHHHHHH----HhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc----CCCccEE
Q 019324 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----ERQFQLV 234 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~l----a~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~----~~~fD~V 234 (343)
.+++||-.|+ +|.++..+ ++.|+ +|+++..++.............+. .++.++.+|+.+... -...|+|
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 3568888884 55554444 44576 788877665443333222211121 368899999988642 1357988
Q ss_pred EECccc
Q 019324 235 MDKGTL 240 (343)
Q Consensus 235 ~~~~~l 240 (343)
+.....
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 876543
No 392
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=82.84 E-value=18 Score=31.78 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=48.9
Q ss_pred CCCCeEEEEccCccH--HHHHH--Hhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCC-Cc-cCCCccEE
Q 019324 163 LSSWSVLDIGTGNGL--LLQEL--SKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD-TK-LERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~--~~~~l--a~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~-~~-~~~~fD~V 234 (343)
...+.++++.|+.|. .++.| |.+ -..++++|-.++..+...++.+...++.+ ++|+.++..+ .. .-...|++
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 556789999766542 23333 333 22489999999999888888887777643 6999887533 21 12467777
Q ss_pred EE
Q 019324 235 MD 236 (343)
Q Consensus 235 ~~ 236 (343)
+.
T Consensus 120 vV 121 (218)
T PF07279_consen 120 VV 121 (218)
T ss_pred EE
Confidence 75
No 393
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.80 E-value=18 Score=33.11 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
.++++||-.|++.| .++..+++.|+ +|+.++.++..++...+.+.. + ..+..+.+|+.+... -
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 34678998887665 24556666786 899999998876665544321 2 245566688887521 1
Q ss_pred CCccEEEECccc
Q 019324 229 RQFQLVMDKGTL 240 (343)
Q Consensus 229 ~~fD~V~~~~~l 240 (343)
+..|+++.+..+
T Consensus 84 g~id~vI~nAG~ 95 (296)
T PRK05872 84 GGIDVVVANAGI 95 (296)
T ss_pred CCCCEEEECCCc
Confidence 578999988654
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.65 E-value=25 Score=32.24 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=60.4
Q ss_pred CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-------CC----------CceEEEEccCCCCc
Q 019324 166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF----------SCIKFLVDDVLDTK 226 (343)
Q Consensus 166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-------~~----------~~i~~~~~D~~~~~ 226 (343)
.+|.=||+|+- .++..++..|. +|+.+|.++..++.+.++...+ +. .++.+ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 46888899854 34556666676 8999999999988765433211 21 11222 223221
Q ss_pred cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 282 (343)
Q Consensus 227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~ 282 (343)
-...|+|+.. + +........+++.+...++|+.+++..+.......+
T Consensus 81 -~~~aD~Viea-----v---pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~l 127 (292)
T PRK07530 81 -LADCDLVIEA-----A---TEDETVKRKIFAQLCPVLKPEAILATNTSSISITRL 127 (292)
T ss_pred -hcCCCEEEEc-----C---cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 1356888763 2 122223346678888999998876644333333333
No 395
>PRK07832 short chain dehydrogenase; Provisional
Probab=82.59 E-value=25 Score=31.58 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=45.4
Q ss_pred eEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCcc
Q 019324 167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ 232 (343)
Q Consensus 167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~fD 232 (343)
++|-.|++.| .++..+++.|+ .|+.++.++..++...+.+...+...+.+..+|+.+... -+..|
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 5677776554 24455566676 799999888776666555443332235567888876421 24589
Q ss_pred EEEECcc
Q 019324 233 LVMDKGT 239 (343)
Q Consensus 233 ~V~~~~~ 239 (343)
+++.+..
T Consensus 81 ~lv~~ag 87 (272)
T PRK07832 81 VVMNIAG 87 (272)
T ss_pred EEEECCC
Confidence 9987654
No 396
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.55 E-value=11 Score=33.32 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------------
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------ 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------ 227 (343)
.++++||-.|+..| .++..|++.|+ +|++++.++...+...+.+...+..++.++..|+.....
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 45789999996544 23444555676 899999998777666555544443467788888863211
Q ss_pred -CCCccEEEECcc
Q 019324 228 -ERQFQLVMDKGT 239 (343)
Q Consensus 228 -~~~fD~V~~~~~ 239 (343)
-+..|.|+.+..
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 246899988754
No 397
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.48 E-value=9.6 Score=35.54 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=59.3
Q ss_pred cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEc-cCCCC---ccCCCccE
Q 019324 162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVD-DVLDT---KLERQFQL 233 (343)
Q Consensus 162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~-D~~~~---~~~~~fD~ 233 (343)
..++.+||-.|+ |.|.++..+++. |. +|++++.++.-.+.+++.+ |...+ ..... +..+. ...+.+|+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 367889999986 566777777776 66 7999998888777776532 32211 11111 11110 01246888
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|+.... . ..+....++|+++|.++...
T Consensus 225 v~d~~g-----------~---~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 225 YFDNVG-----------G---KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEECCC-----------H---HHHHHHHHHhccCcEEEEec
Confidence 876311 1 23578889999999998753
No 398
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=81.95 E-value=25 Score=29.85 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=65.3
Q ss_pred eEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cC----------CCceEEEEccCCCCcc
Q 019324 167 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG----------FSCIKFLVDDVLDTKL 227 (343)
Q Consensus 167 ~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~----------~~~i~~~~~D~~~~~~ 227 (343)
+|.-||+|+= .++..++..|+ +|+.+|.++..++.+++.+.. .+ ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 3666888754 34555566676 899999999999988876543 11 11343 33444432
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
...|+|+-. + ++.......+++++-+++.|+-+|...+......++...+
T Consensus 77 -~~adlViEa-----i---~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~ 126 (180)
T PF02737_consen 77 -VDADLVIEA-----I---PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAAL 126 (180)
T ss_dssp -CTESEEEE------S----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS
T ss_pred -hhhheehhh-----c---cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc
Confidence 257888763 2 2333555678899999999999888777777666665544
No 399
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.80 E-value=11 Score=36.33 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCeEEEEccCc-cH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----------C--c--c-
Q 019324 165 SWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----------T--K--L- 227 (343)
Q Consensus 165 ~~~VLDiGcG~-G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----------~--~--~- 227 (343)
..+|--+|-|- |. ++..++..|+ +|+|+|+++..++...+- ...+..-+... + . +
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G-------~~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRG-------ESYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCC-------cceeecCcHHHHHHHHHhcCCceEecChh
Confidence 35777777763 32 2444556677 899999999999877541 11111111110 0 0 0
Q ss_pred -CCCccEEEE-Cc-cccccccCCCChhhHHHHHHHHhhccCCCcEEEEE--ecCCChHHHHHHHH
Q 019324 228 -ERQFQLVMD-KG-TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT--SCNSTKDELVHEVS 287 (343)
Q Consensus 228 -~~~fD~V~~-~~-~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~--~~~~~~~~~~~~~~ 287 (343)
-...|+++. -. .+.. .+.++........+.+.+.|++|-.+++. ++..+.+++...+.
T Consensus 81 ~l~~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll 143 (436)
T COG0677 81 ELKECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL 143 (436)
T ss_pred hcccCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 014555442 22 2221 13333455567778999999999999994 45666777777665
No 400
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=81.60 E-value=9.2 Score=36.87 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=58.2
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCC----CccCCCcc
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLD----TKLERQFQ 232 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~----~~~~~~fD 232 (343)
..++.+||-.|+| .|.++..+++. |...++.+|.++.-++.+++. |. . .+... +..+ ......+|
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga-~-~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC-E-TVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC-e-EEecCCcccHHHHHHHHcCCCCCc
Confidence 4667888887775 33444555554 765577789988878877752 32 1 11111 1111 11124689
Q ss_pred EEEECcccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 233 LVMDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+++.......-.. +.-........++...+++++||.+++...
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 8886322110000 000001111356888999999999998544
No 401
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.41 E-value=9.3 Score=34.33 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=52.6
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------CCC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ 230 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~~~ 230 (343)
+++++|-.|++.| .++..|++.|+ +|+.++.++..++.+.+.+....-.++.++.+|+.+... -+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4678898898766 35667777787 799999998777666655433211368889999987631 146
Q ss_pred ccEEEECcc
Q 019324 231 FQLVMDKGT 239 (343)
Q Consensus 231 fD~V~~~~~ 239 (343)
.|+++.+..
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 898887654
No 402
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.39 E-value=13 Score=34.91 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=57.2
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCC----CCccCCCccEE
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVL----DTKLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~----~~~~~~~fD~V 234 (343)
..++.+||-.|+| .|..+..+++. |...++++|.++...+.+++ .|...+ .....+.. .......+|++
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 3567899998875 34455556655 66569999999887777764 232111 11111110 11112468988
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+....- ...+..+.++|+++|+++...
T Consensus 240 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 240 IIAGGG-------------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEec
Confidence 863210 124578889999999988653
No 403
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.28 E-value=9.2 Score=33.61 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=49.9
Q ss_pred CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++.++|-.|++.|. +...++++|+ .|+.++.++..++.+.+.....+ .++.+++.|+.+... -+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46789988874442 3344555676 79999999877666655554444 368889999876421 14
Q ss_pred CccEEEECcc
Q 019324 230 QFQLVMDKGT 239 (343)
Q Consensus 230 ~fD~V~~~~~ 239 (343)
.+|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 404
>PRK07985 oxidoreductase; Provisional
Probab=81.25 E-value=32 Score=31.41 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=62.6
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCCh--HHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE--DAINLAQSLANRDGFSCIKFLVDDVLDTKL---------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~--~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------- 227 (343)
.+++++|-.|++.| .++..|++.|+ +|+.++.+. ...+...+.....+ .++.++.+|+.+...
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 34678999997655 35666667786 788776543 33444444443334 367888999987531
Q ss_pred -CCCccEEEECcccccc--ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEE
Q 019324 228 -ERQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 228 -~~~fD~V~~~~~l~~i--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~ 273 (343)
-+..|+++.+...... .+......+. ..+++.+.+.++.+|.+++.
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 2467988876543210 0011111111 24556666777778877774
No 405
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.16 E-value=11 Score=33.03 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------------
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------------- 226 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------------- 226 (343)
++++||-.||+.| .++..++++|+ +|++++-++...+...+.+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4578999997554 24455566676 79999999877666655544333235667777775421
Q ss_pred cCCCccEEEECcc
Q 019324 227 LERQFQLVMDKGT 239 (343)
Q Consensus 227 ~~~~fD~V~~~~~ 239 (343)
..+.+|+|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 1146798887654
No 406
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.15 E-value=24 Score=31.80 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------------CC
Q 019324 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------ER 229 (343)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------~~ 229 (343)
+++||-.|++.|. ++..+++.|+ +|++++-++..++..+. ..+.++.+|+.+... .+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~-------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEA-------EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4578888875442 3445556676 89999998876654432 246788889887520 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+..+
T Consensus 76 ~id~li~~Ag~ 86 (277)
T PRK05993 76 RLDALFNNGAY 86 (277)
T ss_pred CccEEEECCCc
Confidence 68999987543
No 407
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.06 E-value=33 Score=30.42 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=46.1
Q ss_pred CCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|.++ | .++..|++.|+ +|+.++.+....+.+++.. + .++.++.+|+.+...
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---D-EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---c-CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899888763 3 34556666786 7888877644333333221 1 357889999987531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+.+|+++.+..+
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 1578999987654
No 408
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.05 E-value=19 Score=32.99 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=60.3
Q ss_pred CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc--------CC----------CceEEEEccCCCC
Q 019324 166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--------GF----------SCIKFLVDDVLDT 225 (343)
Q Consensus 166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~--------~~----------~~i~~~~~D~~~~ 225 (343)
.+|.-||+|.- .++..++..|. .|+.+|.++..++.++++.... .. .++.+ ..|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 36888899853 34555566675 8999999999988887653211 00 12222 2222211
Q ss_pred ccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 226 ~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
-...|+|+..-. ........+++++...++++.++...+......++.+
T Consensus 82 --~~~aDlVieavp--------e~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~ 130 (287)
T PRK08293 82 --VKDADLVIEAVP--------EDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE 130 (287)
T ss_pred --hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh
Confidence 135688876321 1123345677888888887765544333333334443
No 409
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.91 E-value=7.9 Score=35.34 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=62.8
Q ss_pred eEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHH-------HHcCC-C---------ceEEEEccCCCCcc
Q 019324 167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLA-------NRDGF-S---------CIKFLVDDVLDTKL 227 (343)
Q Consensus 167 ~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~-------~~~~~-~---------~i~~~~~D~~~~~~ 227 (343)
+|.=||+|. +.++..++..|. +|+++|.++..++.+++++ ...+. . ++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577888883 455666777776 8999999999987655322 22221 0 2221 223211
Q ss_pred CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
-...|+|+.. + ++.......+++++.+.++|+.++...+.......+...+
T Consensus 80 ~~~aDlVi~a-----v---~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 80 LKDADLVIEA-----A---TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred hccCCeeeec-----c---cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence 2456888763 1 1222333477889999999998774444444444444433
No 410
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=80.87 E-value=20 Score=34.49 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=64.4
Q ss_pred eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCccCCCccEEEECccccccc
Q 019324 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG 244 (343)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~ 244 (343)
+||-++=.-|.++..++..+. +.+-=|--+-...+.|+..++++ .+++. +.... +++.+|+|+..-
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~-~~~~~d~vl~~~------ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKFL--DSTAD-YPQQPGVVLIKV------ 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---CeeehHHHHHHHHHHHHHHcCCCcccceee--ccccc-ccCCCCEEEEEe------
Confidence 799999999999999996543 23322334445566788888874 24343 33332 455699988632
Q ss_pred cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
|.........+..+..+|.||+.++...-..
T Consensus 115 --PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 115 --PKTLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred --CCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 2233455667889999999999987655443
No 411
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.86 E-value=14 Score=34.05 Aligned_cols=108 Identities=16% Similarity=0.248 Sum_probs=65.3
Q ss_pred CeEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cCC----------CceEEEEccCCCCc
Q 019324 166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DGF----------SCIKFLVDDVLDTK 226 (343)
Q Consensus 166 ~~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~~----------~~i~~~~~D~~~~~ 226 (343)
.+|--||+|+ +.++..++..|+ .|+.+|.++..++.+++++.. .|. .+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence 3788899984 345666677786 899999999999987765332 111 0121 1223211
Q ss_pred cCCCccEEEECccccccccCCCChhhHHHHHHHHhhcc-CCCcEEEEEecCCChHHHHHHH
Q 019324 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~L-kpgG~lii~~~~~~~~~~~~~~ 286 (343)
-...|+|+.. + ++.......++..+-+++ +|+.++...+.......+....
T Consensus 82 -~~~~d~ViEa-----v---~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~ 133 (286)
T PRK07819 82 -FADRQLVIEA-----V---VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAAT 133 (286)
T ss_pred -hCCCCEEEEe-----c---ccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence 1456888763 2 233344456778888888 7776666555555555555433
No 412
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.81 E-value=2.8 Score=40.30 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=50.4
Q ss_pred CCCceEEEEccCCCCc---cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 211 GFSCIKFLVDDVLDTK---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 211 ~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
++++++++.+++.+.. .++++|.++....++++. +......++++.+.++|||++++-+...
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~-----~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD-----PEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC-----HHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 4468999999988753 368999999988888773 4777889999999999999999965543
No 413
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.80 E-value=13 Score=33.17 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCccE
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQL 233 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD~ 233 (343)
.++++|-.|++.| .++..+++.|+ +|++++.++...+.+.+.+......++.++..|+.+... -+..|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 4678999997655 23445666787 899999998777666555443322367888999876531 257899
Q ss_pred EEECcc
Q 019324 234 VMDKGT 239 (343)
Q Consensus 234 V~~~~~ 239 (343)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 887654
No 414
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.54 E-value=11 Score=33.22 Aligned_cols=73 Identities=16% Similarity=0.316 Sum_probs=49.3
Q ss_pred CeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEEC
Q 019324 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK 237 (343)
Q Consensus 166 ~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~ 237 (343)
++||-.|++.|. ++..|++.|+ +|++++-++...+..+......+. ++.++.+|+.+.. .....|+|+.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 478888885542 3445556676 899999887766665555444443 6888999988753 13478999987
Q ss_pred ccc
Q 019324 238 GTL 240 (343)
Q Consensus 238 ~~l 240 (343)
...
T Consensus 81 ag~ 83 (257)
T PRK09291 81 AGI 83 (257)
T ss_pred CCc
Confidence 543
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.47 E-value=11 Score=38.60 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=57.5
Q ss_pred CCeEEEEccCccHHHHHHH----hcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEE
Q 019324 165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM 235 (343)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la----~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~ 235 (343)
..+|+=+|+| .++..++ ++|. .++.+|.++..++.+++ .....+.+|..+... -+..|+++
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 400 KPQVIIVGFG--RFGQVIGRLLMANKM-RITVLERDISAVNLMRK-------YGYKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred cCCEEEecCc--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh-------CCCeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 3467766665 4444443 3455 89999999999998875 256789999998642 24677777
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~ 277 (343)
+. + +++.... .+-...|.+.|...++....+.
T Consensus 470 ~~-----~----~d~~~n~-~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 470 IT-----C----NEPEDTM-KIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred EE-----e----CCHHHHH-HHHHHHHHHCCCCeEEEEeCCH
Confidence 52 1 1112222 2234455567887777654443
No 416
>PLN02827 Alcohol dehydrogenase-like
Probab=80.31 E-value=9 Score=36.60 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=56.2
Q ss_pred ccCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEE--ccCCCC-c--cCCCcc
Q 019324 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV--DDVLDT-K--LERQFQ 232 (343)
Q Consensus 161 ~~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~--~D~~~~-~--~~~~fD 232 (343)
...++.+||-.|+| .|.++..+++. |...|+++|.++.-.+.+++ .|.+. +.... .+.... . ..+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 34678899999874 23344445554 76569999999887777754 23321 11110 011000 0 123688
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~ 275 (343)
+|+....- . ..+....+.|++| |++++...
T Consensus 266 ~vid~~G~----------~---~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 266 YSFECVGD----------T---GIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred EEEECCCC----------h---HHHHHHHHhhccCCCEEEEECC
Confidence 88863221 0 1346778889998 99987543
No 417
>PRK06182 short chain dehydrogenase; Validated
Probab=80.18 E-value=22 Score=31.93 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=44.8
Q ss_pred CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324 165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (343)
Q Consensus 165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~ 230 (343)
+++||-.|++.| .++..+++.|+ +|++++-++..++.... .++.++.+|+.+... .+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~-------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS-------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 457888887544 23444455676 89999988766543321 257788899887531 146
Q ss_pred ccEEEECccc
Q 019324 231 FQLVMDKGTL 240 (343)
Q Consensus 231 fD~V~~~~~l 240 (343)
.|+++.+...
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999987654
No 418
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.82 E-value=9.7 Score=33.75 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=54.3
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|++.| .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+... -+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999998766 35666677787 79999999887777766655544 367888999887531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+...
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 78999887543
No 419
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.81 E-value=16 Score=34.29 Aligned_cols=109 Identities=11% Similarity=0.238 Sum_probs=63.9
Q ss_pred CeEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cCC------CceEEEEccCCCCccCCC
Q 019324 166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DGF------SCIKFLVDDVLDTKLERQ 230 (343)
Q Consensus 166 ~~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~~------~~i~~~~~D~~~~~~~~~ 230 (343)
.+|--||+|+ ..++..++..|+ +|+.+|.++..++.++..+.. .+. .++.+. .|+.+ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC
Confidence 5788999984 345666677787 899999999988776654321 111 112221 11111 1145
Q ss_pred ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324 231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286 (343)
Q Consensus 231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~ 286 (343)
.|+|+... ++...-...++.++-+.++|+.+|...+......++...+
T Consensus 84 aDlViEav--------pE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~ 131 (321)
T PRK07066 84 ADFIQESA--------PEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARA 131 (321)
T ss_pred CCEEEECC--------cCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc
Confidence 68887642 1223444567799999999997544444433444454433
No 420
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.65 E-value=33 Score=29.96 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++++||-.|++.| .++..+++.|+ +|++++.++..++...+.. + .++.++.+|+.+... .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---G-ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---C-CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3568888887654 24555666776 7999998876555444322 3 267788888876431 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
.+|+++.+...
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 421
>PRK12744 short chain dehydrogenase; Provisional
Probab=79.53 E-value=42 Score=29.69 Aligned_cols=107 Identities=11% Similarity=0.136 Sum_probs=58.2
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC----hHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS----EDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s----~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------- 227 (343)
.++++|-.|++.| .++..|++.|+ +++.++.+ ....+...+.....+ .++.++..|+.+...
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCHHHHHHHHHHHH
Confidence 4578998887655 24445555676 56666543 233333333333333 268889999987531
Q ss_pred --CCCccEEEECcccccc-ccCCCChhh-----------HHHHHHHHhhccCCCcEEEE
Q 019324 228 --ERQFQLVMDKGTLDAI-GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVI 272 (343)
Q Consensus 228 --~~~fD~V~~~~~l~~i-~~~~~~~~~-----------~~~~l~~~~~~LkpgG~lii 272 (343)
-+..|+++.+...... .+......+ ...+++.+.+.++++|.+++
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 1468999987654211 001111111 12345666777777776554
No 422
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.48 E-value=8.3 Score=35.42 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=66.8
Q ss_pred CeEEEEccC--ccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 166 WSVLDIGTG--NGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 166 ~~VLDiGcG--~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.+|+=+|.| -|.++..+...|.. .++|.|.+...++.+.+. .+.....+-.........|+|+..-.+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-------gv~d~~~~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-------GVIDELTVAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-------CcccccccchhhhhcccCCEEEEeccHH-
Confidence 467788876 34556666666764 579999988887777642 2222111110011234579998754443
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhc
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR 292 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~ 292 (343)
....+++++...|++|.++ +.....+...++.+..+...
T Consensus 76 ---------~~~~~l~~l~~~l~~g~iv--~Dv~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 76 ---------ATEEVLKELAPHLKKGAIV--TDVGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred ---------HHHHHHHHhcccCCCCCEE--EecccccHHHHHHHHHhccC
Confidence 3456778888889998643 45566777777777766533
No 423
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=79.48 E-value=31 Score=31.96 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=54.0
Q ss_pred CeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCChHHHHHHHHH--HHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324 166 WSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSL--ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (343)
Q Consensus 166 ~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~--~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~ 241 (343)
.+|+-+|||. | .++..|++.|. .|+.++-++..++..++. +.....................+.||+|+.. ..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~--vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA--CK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE--CC
Confidence 4799999983 4 45666777675 899999987666655542 1000000001111111111123578988752 11
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
..+....++.+...+.++..+++.
T Consensus 80 --------~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 80 --------AYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred --------HHhHHHHHHHHHhhCCCCCEEEEE
Confidence 123445678888999998876654
No 424
>PRK07890 short chain dehydrogenase; Provisional
Probab=79.32 E-value=12 Score=33.09 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++++||-.|++.| .++..|+++|+ +|++++.++...+...+.....+ .++.++..|+.+... -+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4678998887655 34556667787 89999999877766665554444 368899999986531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999887643
No 425
>PRK12747 short chain dehydrogenase; Provisional
Probab=79.18 E-value=40 Score=29.64 Aligned_cols=107 Identities=7% Similarity=0.062 Sum_probs=59.0
Q ss_pred CCeEEEEccCccH---HHHHHHhcCCCcEEEEe-CChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------------
Q 019324 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVD-YSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------- 227 (343)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD-~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------- 227 (343)
++++|-.|++.|. ++..|++.|+ .|+.++ ..+..++.........+ ..+..+..|+.+...
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcC-CceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 5688888977663 4555666776 677664 44444444433333333 256677788876420
Q ss_pred ----CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEE
Q 019324 228 ----ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 228 ----~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~ 273 (343)
....|+++.+..+.... +........ ..+++.+.+.++.+|.+++.
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~i 143 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINI 143 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEE
Confidence 02689999876542211 111111111 13345566777777877764
No 426
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=78.93 E-value=15 Score=33.83 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=57.5
Q ss_pred cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCC---ccCCCccEE
Q 019324 162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT---KLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~---~~~~~fD~V 234 (343)
..++.+||-.|. |.|..+..+++. |. +|++++-++.-.+.+++ .|...+ .....|+.+. .....+|+|
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 356789998874 566777777776 65 79999999887777765 233211 1111111100 012458888
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
+.... . ..+....++|+++|+++..
T Consensus 216 ld~~g-----------~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 216 FDNVG-----------G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EECCC-----------H---HHHHHHHHhhccCCEEEEE
Confidence 85311 1 2347889999999999864
No 427
>PRK12742 oxidoreductase; Provisional
Probab=78.79 E-value=39 Score=29.31 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCcc
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ 232 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD 232 (343)
++++||-.|++.| .++..|++.|+ +|+.+.. ++...+...+ .. ++.++..|+.+... .+.+|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~---~~---~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQ---ET---GATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHH---Hh---CCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 3678998888554 24455566676 6776654 3333332222 11 35677788876421 24689
Q ss_pred EEEECcccccccc-CCCChhhHH-----------HHHHHHhhccCCCcEEEEE
Q 019324 233 LVMDKGTLDAIGL-HPDGPLKRI-----------MYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 233 ~V~~~~~l~~i~~-~~~~~~~~~-----------~~l~~~~~~LkpgG~lii~ 273 (343)
+++.+........ ......+.. .++..+.+.++++|.+++.
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 130 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIII 130 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9988754422210 011111111 2334566667777777764
No 428
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=78.17 E-value=11 Score=36.94 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=69.6
Q ss_pred CCCCeEEEEccCccHH--HHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc--CC----CCccCCCccE
Q 019324 163 LSSWSVLDIGTGNGLL--LQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD--VL----DTKLERQFQL 233 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~--~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D--~~----~~~~~~~fD~ 233 (343)
..+..++|+|.|.|.- +..+...+ ...++.||-|..|......+... |-.+-..+... .. ..+....||+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccCCCCcccceee
Confidence 4567888888876643 33333333 34899999999999998877654 11111111111 11 1112456999
Q ss_pred EEECccccccccCCCChhhHHHHH-HHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSCNST-KDELVHEVS 287 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l-~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~ 287 (343)
|++...+..+. . ...+.... ....+..++|+.+++...... .-+.+.+-+
T Consensus 278 vi~ah~l~~~~---s-~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR 329 (491)
T KOG2539|consen 278 VICAHKLHELG---S-KFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEAR 329 (491)
T ss_pred EEeeeeeeccC---C-chhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHH
Confidence 99988887663 1 12333333 445666788998888654433 344444433
No 429
>PRK06484 short chain dehydrogenase; Validated
Probab=78.11 E-value=30 Score=34.38 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
..++++|-.|++.| .++..|++.|+ +|+.++-++..++...+.. + .++..+..|+.+... -
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---G-DEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 34678888888766 34556677786 8999999887776655432 2 256678889887531 1
Q ss_pred CCccEEEECccccc-c-ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324 229 RQFQLVMDKGTLDA-I-GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 229 ~~fD~V~~~~~l~~-i-~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~ 274 (343)
+..|+++.+..+.. . .+........ ..+.+.+...++.+|.+++.+
T Consensus 342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 56899998754321 1 1111111111 233455666667778877753
No 430
>PRK05693 short chain dehydrogenase; Provisional
Probab=78.00 E-value=24 Score=31.62 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=42.8
Q ss_pred eEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCcc
Q 019324 167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ 232 (343)
Q Consensus 167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~fD 232 (343)
++|-.||+.| .++..+++.|+ +|++++.++..++.... .++.++.+|+.+... .+..|
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA-------AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 6777786544 23444555676 89999998776554432 246678888876421 14689
Q ss_pred EEEECccc
Q 019324 233 LVMDKGTL 240 (343)
Q Consensus 233 ~V~~~~~l 240 (343)
+|+.+...
T Consensus 75 ~vi~~ag~ 82 (274)
T PRK05693 75 VLINNAGY 82 (274)
T ss_pred EEEECCCC
Confidence 99987654
No 431
>PRK07677 short chain dehydrogenase; Provisional
Probab=77.94 E-value=12 Score=33.13 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=50.2
Q ss_pred CeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCc
Q 019324 166 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 231 (343)
Q Consensus 166 ~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~f 231 (343)
+++|-.|++.| .++..+++.|. +|++++-++...+.+.+.+...+ .++.++.+|+.+... -+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57888888665 24556666787 89999998877766665554443 368899999887521 1468
Q ss_pred cEEEECcc
Q 019324 232 QLVMDKGT 239 (343)
Q Consensus 232 D~V~~~~~ 239 (343)
|+++.+..
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99887653
No 432
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.90 E-value=43 Score=30.80 Aligned_cols=79 Identities=22% Similarity=0.208 Sum_probs=58.6
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCcc-----------
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL----------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~----------- 227 (343)
..++.||-=||-+| .++..++..|. +++-+--..+-++...+.+...+-.. +..+++|+.+...
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 45789999999888 46778888886 67777777777777755555544334 9999999998741
Q ss_pred CCCccEEEECccccc
Q 019324 228 ERQFQLVMDKGTLDA 242 (343)
Q Consensus 228 ~~~fD~V~~~~~l~~ 242 (343)
-+..|+.+.|..+..
T Consensus 89 fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL 103 (282)
T ss_pred cCCCCEEEecCcccc
Confidence 267899999976544
No 433
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.80 E-value=5.1 Score=37.35 Aligned_cols=93 Identities=24% Similarity=0.314 Sum_probs=56.1
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc------CCCCccCCCccEE
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD------VLDTKLERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D------~~~~~~~~~fD~V 234 (343)
.++.+||-.|+|. |..+..+++. |...+++++-++...+.+++ .+.. .++..+ +........+|++
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD--DTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--EEecCccccHHHHHHHhCCCCCCEE
Confidence 5677899998754 5566666665 65349999988887776643 2321 111111 1111112358999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+....- ...+..+.++|+++|.++...
T Consensus 232 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAAGS-------------PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 864110 123478889999999988754
No 434
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.77 E-value=13 Score=32.81 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++++||-.|++.| .++..|++.|+ +|+.++-++..++...+.....+ .++.++.+|+.+... -+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4678999997655 24455666676 79999999877766666555444 368899999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
.+|+|+.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999987643
No 435
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=77.75 E-value=14 Score=32.79 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
.++++||-.|++.| .++..++++|+ +|+.++-++..++...+.+...+ .++.++.+|+.+... -
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45778998887554 23445566686 89999999877766665555444 368899999887531 1
Q ss_pred CCccEEEECcc
Q 019324 229 RQFQLVMDKGT 239 (343)
Q Consensus 229 ~~fD~V~~~~~ 239 (343)
++.|.++.+..
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 46788887654
No 436
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=77.57 E-value=47 Score=30.25 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=59.5
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCc-----------
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTK----------- 226 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~----------- 226 (343)
..++.+|--|...| ..+..|++.|+ +|+.++.++..++...+.....+. .++..+.+|+.+.+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 45778888888777 45778888887 899999999998888876665554 36889999998653
Q ss_pred -cCCCccEEEECccc
Q 019324 227 -LERQFQLVMDKGTL 240 (343)
Q Consensus 227 -~~~~fD~V~~~~~l 240 (343)
+.++.|+++.+...
T Consensus 85 ~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGA 99 (270)
T ss_pred HhCCCCCEEEEcCCc
Confidence 14789999987644
No 437
>PRK12743 oxidoreductase; Provisional
Probab=77.03 E-value=44 Score=29.59 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=46.8
Q ss_pred CCeEEEEccCcc---HHHHHHHhcCCCcEEEEe-CChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVD-YSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD-~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+++||-.|++.| .++..++++|+ +|+.+. -+....+.+.+.....+ .++.++.+|+.+... -+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHG-VRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357888897655 23445556676 677764 34555555555444444 378899999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+...
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 68999887543
No 438
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=76.64 E-value=27 Score=33.74 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=57.2
Q ss_pred eEEEEccC-ccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc---CC------CceEEEE-ccCCCCccCCCccEEE
Q 019324 167 SVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD---GF------SCIKFLV-DDVLDTKLERQFQLVM 235 (343)
Q Consensus 167 ~VLDiGcG-~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~---~~------~~i~~~~-~D~~~~~~~~~fD~V~ 235 (343)
+|--||+| .|.-+..+...|+ +|+++|+++..++.+++..... ++ .+..+.. .|... .....|+|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~--~~~~ad~vi 78 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE--AYRDADYVI 78 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh--hhcCCCEEE
Confidence 45566777 4432223333475 8999999999999887622100 00 0112211 11111 113457776
Q ss_pred ECcccccccc--CCCChhhHHHHHHHHhhccCCCcEEEEE--ecCCChHHHHHHHH
Q 019324 236 DKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVIT--SCNSTKDELVHEVS 287 (343)
Q Consensus 236 ~~~~l~~i~~--~~~~~~~~~~~l~~~~~~LkpgG~lii~--~~~~~~~~~~~~~~ 287 (343)
..-.-. +.. ...........++.+.+ +++|.+++.. .+..+..++.+.+.
T Consensus 79 i~Vpt~-~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~ 132 (388)
T PRK15057 79 IATPTD-YDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYR 132 (388)
T ss_pred EeCCCC-CccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhh
Confidence 531110 100 00112344566677877 6888777663 33445566665554
No 439
>PRK06197 short chain dehydrogenase; Provisional
Probab=76.63 E-value=56 Score=29.90 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=49.4
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCcc-----------
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~----------- 227 (343)
..+++||-.|+..| .++..|+++|+ +|+.++-++...+.+.+.+... +-.++.++.+|+.+...
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 34678888886544 23445556676 7888888876665554443321 11368889999987631
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+.+|+++.+..+
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 1468999987654
No 440
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.56 E-value=15 Score=32.41 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=52.9
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
.++++||-.|++.| .+...|++.|+ +|+.++.++..++...+.....+ .++.++..|+.+... -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34578999998876 35556677786 89999999877766666555444 357788889877531 1
Q ss_pred CCccEEEECcc
Q 019324 229 RQFQLVMDKGT 239 (343)
Q Consensus 229 ~~fD~V~~~~~ 239 (343)
+++|+++.+..
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 46899987654
No 441
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=76.47 E-value=58 Score=33.91 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-cCCCceEEEEccCCCCcc-----------C
Q 019324 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
.+++||-.|++.|. ++..|++.|+ +|+++|.+....+...+.+.. .+..++.++.+|+.+... -
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 46788988876552 3445666676 899999998777665544432 222357788999987531 1
Q ss_pred CCccEEEECccc
Q 019324 229 RQFQLVMDKGTL 240 (343)
Q Consensus 229 ~~fD~V~~~~~l 240 (343)
+.+|+++.+..+
T Consensus 492 g~iDilV~nAG~ 503 (676)
T TIGR02632 492 GGVDIVVNNAGI 503 (676)
T ss_pred CCCcEEEECCCC
Confidence 368998887654
No 442
>PRK06940 short chain dehydrogenase; Provisional
Probab=76.43 E-value=25 Score=31.77 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=45.8
Q ss_pred CeEEEEccCccHHHHHHHh---cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------CCCcc
Q 019324 166 WSVLDIGTGNGLLLQELSK---QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQFQ 232 (343)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~---~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~~~fD 232 (343)
+.+|--|+ |.++..+++ .|. +|+.+|.++..++.+.+.+...+ .++.++.+|+.+... -+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 35666665 345555544 365 89999998876665555444434 268888999987531 14689
Q ss_pred EEEECccc
Q 019324 233 LVMDKGTL 240 (343)
Q Consensus 233 ~V~~~~~l 240 (343)
+++.+..+
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99887653
No 443
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=76.32 E-value=19 Score=32.97 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=54.2
Q ss_pred cCCCCeEEEEccCccHHHHH---HHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEEC
Q 019324 162 YLSSWSVLDIGTGNGLLLQE---LSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 237 (343)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~---la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~ 237 (343)
..++.+||-.|+ |.++.. +++. |. ++++++.++...+.+++ .|...+. +.......+.+|+++..
T Consensus 153 ~~~g~~vlV~g~--g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~vid~ 221 (319)
T cd08242 153 ITPGDKVAVLGD--GKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVVVEA 221 (319)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEEEEC
Confidence 356788988875 444444 3443 66 69999999988888775 2332111 11111223568999863
Q ss_pred ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
..- ...+..+.+.|+++|.+++.
T Consensus 222 ~g~-------------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 222 TGS-------------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CCC-------------hHHHHHHHHHhhcCCEEEEE
Confidence 210 12347778899999999874
No 444
>PRK06101 short chain dehydrogenase; Provisional
Probab=76.29 E-value=46 Score=29.13 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=35.7
Q ss_pred CeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc
Q 019324 166 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226 (343)
Q Consensus 166 ~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~ 226 (343)
+++|-.|+..| .++..|+++|+ +|+.++-++..++...+. + .++.++.+|+.+..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~~ 59 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDHP 59 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCHH
Confidence 35777776444 24455566676 799999987665544321 1 36788899998753
No 445
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=76.22 E-value=12 Score=30.65 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=52.3
Q ss_pred eEEEEccCcc---HHHHHHHhcCCCcEEEEeCC--hHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324 167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (343)
Q Consensus 167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s--~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~ 230 (343)
++|-.|++.| .++..++++|...|+.+.-+ ....+.....+...+ .++.++.+|+.+... .+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 6788888766 35666777766688999988 565665655555555 589999999887531 368
Q ss_pred ccEEEECccc
Q 019324 231 FQLVMDKGTL 240 (343)
Q Consensus 231 fD~V~~~~~l 240 (343)
.|+++.+...
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 9999976543
No 446
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=76.16 E-value=11 Score=36.50 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=58.0
Q ss_pred cCCCCeEEEEcc-C-ccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHc----CCCceEEEEc----cCCC----
Q 019324 162 YLSSWSVLDIGT-G-NGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVD----DVLD---- 224 (343)
Q Consensus 162 ~~~~~~VLDiGc-G-~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~----~~~~i~~~~~----D~~~---- 224 (343)
..++.+||-+|+ | .|.++..+++. |..+|+++|.++.-++.+++..... |. ...++.. ++..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHHHH
Confidence 356789998873 3 67777777775 3347999999999999888742111 21 1111211 1111
Q ss_pred CccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 225 TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 225 ~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
......+|+|+....- ...+....++|+++|.+++.
T Consensus 252 ~t~g~g~D~vid~~g~-------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFVPV-------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcCCC-------------HHHHHHHHHHhccCCeEEEE
Confidence 0112368888863210 12347788899988876553
No 447
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.07 E-value=5.3 Score=37.14 Aligned_cols=95 Identities=25% Similarity=0.326 Sum_probs=57.6
Q ss_pred cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccC----CCCccCCCccEE
Q 019324 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV----LDTKLERQFQLV 234 (343)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~----~~~~~~~~fD~V 234 (343)
+.++.+||-.|+|. |..+..+++. |. +++++.-++...+.+++. +... +.....++ ........+|++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 35678999998763 6667777766 65 799998888877777542 2111 11111111 111113458999
Q ss_pred EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
+....- ...+..+.+.|+++|.++...
T Consensus 232 ld~~g~-------------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATGN-------------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCCC-------------HHHHHHHHHHHhcCCEEEEEc
Confidence 864210 123477888999999988654
No 448
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=76.05 E-value=18 Score=35.25 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred CeEEEEccCccH--HHHHHHhcCCCcEEEEeCChHHHHHHHHHH---------------HHcCCCceEEEEccCCCCccC
Q 019324 166 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLA---------------NRDGFSCIKFLVDDVLDTKLE 228 (343)
Q Consensus 166 ~~VLDiGcG~G~--~~~~la~~g~~~v~gvD~s~~~i~~a~~~~---------------~~~~~~~i~~~~~D~~~~~~~ 228 (343)
.+|.=||.|.-. ++..|++.|+ +|+++|.++..++..+... ...| ++.+. .++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~~------ 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TTP------ 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-ccc------
Confidence 468888888543 4555667786 8999999999888643210 0011 11111 111
Q ss_pred CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec--CCChHHHHHHHH
Q 019324 229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC--NSTKDELVHEVS 287 (343)
Q Consensus 229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~--~~~~~~~~~~~~ 287 (343)
...|+|+..-....-.-...........++.+.+.|++|-++++.+. .....++...+.
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 24677765211100000011113445667888999999887777433 334445544444
No 449
>PRK05866 short chain dehydrogenase; Provisional
Probab=75.93 E-value=19 Score=33.05 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.+++||-.|++.|. ++..|+++|+ +|+.++-++..++...+.....+. ++.++.+|+.+... -+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789988886552 4455666676 899999998777666655544442 57888999987531 14
Q ss_pred CccEEEECcc
Q 019324 230 QFQLVMDKGT 239 (343)
Q Consensus 230 ~fD~V~~~~~ 239 (343)
..|+++.+..
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 7899998754
No 450
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.90 E-value=15 Score=32.60 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=53.1
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH--cCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR--DGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~--~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|++.| .++..|+++|+ +|+.++.++..++...+.+.. .+ .++.++.+|+.+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAG-ARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678999998665 24556667786 799999998877776665544 22 368889999987531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+..|+++.+...
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 1468999887543
No 451
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=75.90 E-value=45 Score=28.87 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCCCeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCC---hHHHH---------------HHHHHHHHcC-CCceEEEEcc
Q 019324 163 LSSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS---EDAIN---------------LAQSLANRDG-FSCIKFLVDD 221 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s---~~~i~---------------~a~~~~~~~~-~~~i~~~~~D 221 (343)
....+|+-+|||. | ..+..|+..|..+++-+|.+ +..+. .+++++...+ .-++..+..+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 4467999999984 3 45667777788789999998 32222 1223333322 1134444444
Q ss_pred CCCCcc---CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCC
Q 019324 222 VLDTKL---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP 266 (343)
Q Consensus 222 ~~~~~~---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp 266 (343)
+..... -..+|+|+.. .+. ......+++.+.+.++.
T Consensus 99 i~~~~~~~~~~~~DlVi~a--~Dn-------~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEA--FDN-------AEAKAMLVNAVLEKYKD 137 (200)
T ss_pred CCHhHHHHHhcCCCEEEEC--CCC-------HHHHHHHHHHHHHHcCC
Confidence 443221 2468999874 222 23444556677776654
No 452
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=75.81 E-value=5 Score=38.03 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=57.1
Q ss_pred cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc---C----CCCccCCCcc
Q 019324 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD---V----LDTKLERQFQ 232 (343)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D---~----~~~~~~~~fD 232 (343)
..++.+||-.|+|. |..+..+++. |...++++|.++...+.+++. +.. .++..+ . .... ...+|
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~--~~i~~~~~~~~~~v~~~~-~~~~d 256 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT--HVINPKEEDLVAAIREIT-GGGVD 256 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc--EEecCCCcCHHHHHHHHh-CCCCc
Confidence 35678899888743 4555556655 765799999998877776542 221 111111 1 0111 34688
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+|+....- . ..+..+.++|+++|.++....
T Consensus 257 ~vld~~g~----------~---~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 257 YALDTTGV----------P---AVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEEECCCC----------c---HHHHHHHHHhccCCEEEEeCc
Confidence 88863210 0 234788899999999887543
No 453
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.79 E-value=9.8 Score=36.63 Aligned_cols=68 Identities=26% Similarity=0.402 Sum_probs=48.3
Q ss_pred CeEEEEccCc-cHH-HHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEEC
Q 019324 166 WSVLDIGTGN-GLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDK 237 (343)
Q Consensus 166 ~~VLDiGcG~-G~~-~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~ 237 (343)
.+||-||||. |.. +..|++++..+|+..|-|...++.+..... .++++.+.|+.+.+ .-..+|+|+.-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4799999952 333 333455664599999999888887776532 37899999998874 12456999864
No 454
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.71 E-value=7.5 Score=37.36 Aligned_cols=45 Identities=18% Similarity=0.025 Sum_probs=36.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~ 208 (343)
.++.+||-|..|..+.+..|... .++|++||+||..+...+-+..
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 67889999988877777776665 4699999999998888776543
No 455
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.61 E-value=16 Score=31.25 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=55.2
Q ss_pred eEEEEccCc-c-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH------------HcC-CCceEEEEccCCCCccCCCc
Q 019324 167 SVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDG-FSCIKFLVDDVLDTKLERQF 231 (343)
Q Consensus 167 ~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~------------~~~-~~~i~~~~~D~~~~~~~~~f 231 (343)
+|--+|.|- | -++..+++.|+ +|+|+|+++.-++...+-.. ... ..++.+. .|.... -...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--i~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--IKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--HHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--hhcc
Confidence 466677763 3 23556667786 89999999998887764110 000 0122222 122110 1235
Q ss_pred cEEEEC-ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE--ecCCChHHHHH
Q 019324 232 QLVMDK-GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT--SCNSTKDELVH 284 (343)
Q Consensus 232 D~V~~~-~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~--~~~~~~~~~~~ 284 (343)
|+++.. ++-..- -...+.......++.+.+.|+++-.+++. .+..+.+++..
T Consensus 78 dv~~I~VpTP~~~-~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~ 132 (185)
T PF03721_consen 78 DVVFICVPTPSDE-DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLK 132 (185)
T ss_dssp SEEEE----EBET-TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHH
T ss_pred ceEEEecCCCccc-cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhh
Confidence 655542 211100 01112244567889999999998888873 33444443443
No 456
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.53 E-value=51 Score=29.41 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=43.4
Q ss_pred CCCeEEEEcc-CccHH----HHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGT-GNGLL----LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGc-G~G~~----~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|+ |++.+ +..+++.|+ +|+.++......+..++.....+ ...++.+|+.+...
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SDLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcC--CcceeeccCCCHHHHHHHHHHHHHH
Confidence 4678999996 34433 445556676 78777654333333333222222 23467889887531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+.+|+++.+..+
T Consensus 82 ~g~iD~lvnnAG~ 94 (260)
T PRK06997 82 WDGLDGLVHSIGF 94 (260)
T ss_pred hCCCcEEEEcccc
Confidence 2579999987654
No 457
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=75.24 E-value=17 Score=32.53 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|++.| .++..|+++|+ +|+.++-++..++.+.+.....+. ++.++.+|+.+... -+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4678999998766 35666777787 799999998877776666655442 68889999987531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
.+|+++.+...
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999987643
No 458
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.92 E-value=38 Score=31.05 Aligned_cols=106 Identities=15% Similarity=0.250 Sum_probs=60.7
Q ss_pred CeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH-------HcCC----------CceEEEEccCCCCc
Q 019324 166 WSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGF----------SCIKFLVDDVLDTK 226 (343)
Q Consensus 166 ~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~-------~~~~----------~~i~~~~~D~~~~~ 226 (343)
.+|.=||+|. | .++..++..|. +|+.+|.++..++.+++++. ..+. .++. ...+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH--
Confidence 4688888883 2 45555666676 89999999999887655432 1111 0111 1122211
Q ss_pred cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284 (343)
Q Consensus 227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~ 284 (343)
-...|+|+.. + ++.+.....++.++...++|+.+++..+.......+.+
T Consensus 81 -~~~aD~Viea-----v---~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~ 129 (295)
T PLN02545 81 -LRDADFIIEA-----I---VESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS 129 (295)
T ss_pred -hCCCCEEEEc-----C---ccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 1346888763 2 22334455677888888888876654344434444443
No 459
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.92 E-value=13 Score=32.35 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=27.0
Q ss_pred CCCCeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCC
Q 019324 163 LSSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 196 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s 196 (343)
..+.+||=+|||. | ..+..|+..|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4578999999984 4 35667777788899999988
No 460
>PRK07791 short chain dehydrogenase; Provisional
Probab=74.69 E-value=22 Score=32.37 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCCh---------HHHHHHHHHHHHcCCCceEEEEccCCCCcc---
Q 019324 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE---------DAINLAQSLANRDGFSCIKFLVDDVLDTKL--- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~---------~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--- 227 (343)
.+++++|-.|++.|. ++..+++.|+ +|+.++.+. ..++.+.+.+...+ .++.++.+|+.+...
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG-GEAVANGDDIADWDGAAN 81 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcC-CceEEEeCCCCCHHHHHH
Confidence 346789999987763 4556677786 788888764 44444444444334 267788899987521
Q ss_pred --------CCCccEEEECccc
Q 019324 228 --------ERQFQLVMDKGTL 240 (343)
Q Consensus 228 --------~~~fD~V~~~~~l 240 (343)
-+..|+++.+..+
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 2578999987654
No 461
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.27 E-value=33 Score=31.75 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCcc-----------
Q 019324 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~----------- 227 (343)
..++++|-.|++.|. ++..|++.|+ +|+.+.-+....+.+.+.+... +-.++.++.+|+.+...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 346788888887663 4556666786 8999988877666555544332 21368899999987531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
.+..|+++.+...
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2468999987644
No 462
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.19 E-value=65 Score=28.89 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|++. | .++..+++.|+ +|+.++.+....+.+++..... ..+.++.+|+.+...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 357899999865 3 25667777787 6888887643333333332222 245678899987531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+.+|+++.+..+
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 2568999988754
No 463
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.19 E-value=67 Score=28.93 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=45.5
Q ss_pred CCCCeEEEEccC-ccH----HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324 163 LSSWSVLDIGTG-NGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------- 227 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~----~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------- 227 (343)
..++++|-.|++ ++. ++..|++.|+ +|+.+.-++...+.+++.....+ ...++++|+.+...
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHH
Confidence 346789999985 233 3555666687 78777655433344443333333 34568889877531
Q ss_pred -CCCccEEEECccc
Q 019324 228 -ERQFQLVMDKGTL 240 (343)
Q Consensus 228 -~~~fD~V~~~~~l 240 (343)
-+..|+++.+..+
T Consensus 85 ~~g~iD~lv~nAG~ 98 (272)
T PRK08159 85 KWGKLDFVVHAIGF 98 (272)
T ss_pred hcCCCcEEEECCcc
Confidence 2568999988643
No 464
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.77 E-value=18 Score=31.83 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=53.7
Q ss_pred CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|++.|. ++..+++.|+ +|+.++.++..++.+.+.....+. .+..+..|+.+... -+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 36789999998884 6667777887 799999999888777666655443 56677788776431 14
Q ss_pred -CccEEEECc
Q 019324 230 -QFQLVMDKG 238 (343)
Q Consensus 230 -~fD~V~~~~ 238 (343)
..|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789999875
No 465
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=73.59 E-value=3.7 Score=36.78 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH
Q 019324 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~ 208 (343)
+..+++|+.||+|.++..+...+ ..|+.-|+++..+...+..+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc-cceeeeechHHHHHHHHHHHh
Confidence 57899999999999999987764 489999999998888875443
No 466
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.56 E-value=20 Score=31.66 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=53.1
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+++++|-.|++.| .++..|++.|+ +|+.++-++..++.+.+.+...+ .++.++.+|+.+... -+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3568888888655 34556667787 79999999887777666655544 368889999887531 14
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 78999887643
No 467
>PRK08177 short chain dehydrogenase; Provisional
Probab=73.56 E-value=34 Score=29.59 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=43.6
Q ss_pred CeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCccE
Q 019324 166 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQFQL 233 (343)
Q Consensus 166 ~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~fD~ 233 (343)
++||-.|+..| .++..|++.|+ +|++++.++.-.+.++. . .++.+..+|+.+... .+.+|+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~----~--~~~~~~~~D~~d~~~~~~~~~~~~~~~id~ 74 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQA----L--PGVHIEKLDMNDPASLDQLLQRLQGQRFDL 74 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHh----c--cccceEEcCCCCHHHHHHHHHHhhcCCCCE
Confidence 36777777544 24556666776 89999988765543322 1 256778888876531 246899
Q ss_pred EEECcc
Q 019324 234 VMDKGT 239 (343)
Q Consensus 234 V~~~~~ 239 (343)
|+.+..
T Consensus 75 vi~~ag 80 (225)
T PRK08177 75 LFVNAG 80 (225)
T ss_pred EEEcCc
Confidence 987753
No 468
>PRK06484 short chain dehydrogenase; Validated
Probab=73.52 E-value=37 Score=33.75 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+++++|-.|++.| .++..|+++|+ +|+.++.++..++.+.+.. + .++.++..|+.+... -+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---G-PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4678898898877 35666677786 8999998877665544432 3 267788899887531 15
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+++.+..+
T Consensus 79 ~iD~li~nag~ 89 (520)
T PRK06484 79 RIDVLVNNAGV 89 (520)
T ss_pred CCCEEEECCCc
Confidence 78999987543
No 469
>PRK07454 short chain dehydrogenase; Provisional
Probab=73.49 E-value=21 Score=31.18 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCCeEEEEccCccHH----HHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 164 SSWSVLDIGTGNGLL----LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 164 ~~~~VLDiGcG~G~~----~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
..+++|-.|+ +|.+ +..++++|. +|++++.++...+...+.....+ .++.++.+|+.+... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888886 4444 445555676 89999999877666555544433 368899999987531 1
Q ss_pred CCccEEEECccc
Q 019324 229 RQFQLVMDKGTL 240 (343)
Q Consensus 229 ~~fD~V~~~~~l 240 (343)
+..|+++.+...
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 358999876543
No 470
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=73.38 E-value=9.2 Score=34.97 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=42.5
Q ss_pred CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~ 210 (343)
.++..|||.-+|+|..+......|- ..+|+|+++..++.+.++....
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 7889999999999999999988864 8999999999999999988754
No 471
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.29 E-value=20 Score=33.79 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=54.3
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-------CccCCCccE
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-------TKLERQFQL 233 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-------~~~~~~fD~ 233 (343)
.++.+||-.|+| .|..+..+++. |...+++++-++...+.+++ .+.. .++..+-.. ......+|+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~--~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT--HTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc--eEecCCcccHHHHHHHHhCCCCCCE
Confidence 456788877654 44555555555 65349999998887777654 2221 111111111 111356898
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
|+....- . ..+..+.++|+++|.++...
T Consensus 260 vld~vg~----------~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEALGK----------P---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEeCCC----------H---HHHHHHHHHHhcCCEEEEEc
Confidence 8863110 0 13477889999999988764
No 472
>PRK06953 short chain dehydrogenase; Provisional
Probab=73.05 E-value=60 Score=27.92 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=42.8
Q ss_pred eEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCccEE
Q 019324 167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQFQLV 234 (343)
Q Consensus 167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~fD~V 234 (343)
++|=.||+.| .++..|++.|+ +|+.++.++..++..+. .+++++.+|+.+... ...+|+|
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v 74 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQA-------LGAEALALDVADPASVAGLAWKLDGEALDAA 74 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHh-------ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence 5777777544 24555666676 79999998765554332 135678888887531 2368999
Q ss_pred EECccc
Q 019324 235 MDKGTL 240 (343)
Q Consensus 235 ~~~~~l 240 (343)
+.+...
T Consensus 75 i~~ag~ 80 (222)
T PRK06953 75 VYVAGV 80 (222)
T ss_pred EECCCc
Confidence 986543
No 473
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=73.04 E-value=9.1 Score=36.68 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=51.8
Q ss_pred CCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECccc
Q 019324 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTL 240 (343)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l 240 (343)
++.+|+-+|+| .|..+...+.. |. +|+.+|.++..++.+.... +. .+.....+...+. .-..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---GG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---Cc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 46779999997 44444444443 76 7999999987766554432 11 1211111111110 12468999964211
Q ss_pred cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~ 274 (343)
..- ..+. .+-++..+.++||++++-..
T Consensus 241 ~g~----~~p~---lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGA----KAPK---LVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCC----CCCc---CcCHHHHhcCCCCCEEEEEe
Confidence 000 0010 11255567789998777644
No 474
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.65 E-value=38 Score=35.51 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=70.8
Q ss_pred CCeEEEEccCcc--HHHHHHH-hcCCCcEEEEeCChHHHHHHHHHHHHc-------C----------CCceEEEEccCCC
Q 019324 165 SWSVLDIGTGNG--LLLQELS-KQGFSDLTGVDYSEDAINLAQSLANRD-------G----------FSCIKFLVDDVLD 224 (343)
Q Consensus 165 ~~~VLDiGcG~G--~~~~~la-~~g~~~v~gvD~s~~~i~~a~~~~~~~-------~----------~~~i~~~~~D~~~ 224 (343)
-.+|.-||+|+= .++..++ ..|+ .|+.+|.++..++.++.++... + ..++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 468999999983 4555556 5576 8999999999998876654321 1 0123332 12211
Q ss_pred CccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 225 TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 225 ~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
-...|+|+-. +. +.......++.++-++++|+.+|.-.+..-...++...+.
T Consensus 387 ---~~~aDlViEa-v~-------E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~ 438 (708)
T PRK11154 387 ---FKHADVVIEA-VF-------EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAA 438 (708)
T ss_pred ---hccCCEEeec-cc-------ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcC
Confidence 1357777753 22 2234556788999999999988876666666666666543
No 475
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.49 E-value=24 Score=35.71 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=43.0
Q ss_pred CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEE
Q 019324 166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD 236 (343)
Q Consensus 166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~ 236 (343)
.+|+=+|||.= .++..|.++|. .++.+|.++..++.+++ .....+.+|..+... -+..|.++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~-------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE-------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 56777777642 22333334454 89999999999888875 257899999998641 246786654
No 476
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=39 Score=31.68 Aligned_cols=77 Identities=25% Similarity=0.367 Sum_probs=46.2
Q ss_pred CCeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHH-------------------HHHHHH-HHcCCCceEEEEccC
Q 019324 165 SWSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAIN-------------------LAQSLA-NRDGFSCIKFLVDDV 222 (343)
Q Consensus 165 ~~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~-------------------~a~~~~-~~~~~~~i~~~~~D~ 222 (343)
+.+||-||+|.= .++..|+-.|+.++..+|.+.--+. .|.+-. .+.+-..+.++..++
T Consensus 40 ~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kI 119 (422)
T KOG2015|consen 40 DCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKI 119 (422)
T ss_pred hCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecch
Confidence 468999998642 3455555568888887776532221 111111 111112467788888
Q ss_pred CCCcc--CCCccEEEECcccccc
Q 019324 223 LDTKL--ERQFQLVMDKGTLDAI 243 (343)
Q Consensus 223 ~~~~~--~~~fD~V~~~~~l~~i 243 (343)
.+.+. -..||+|+| .++.|
T Consensus 120 qd~~~~FYk~F~~iic--GLDsI 140 (422)
T KOG2015|consen 120 QDKPISFYKRFDLIIC--GLDSI 140 (422)
T ss_pred hcCCHHHHhhhceEEe--cccch
Confidence 88764 378999998 46655
No 477
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.33 E-value=58 Score=28.94 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=60.3
Q ss_pred CCCeEEEEccC-ccHH----HHHHHhcCCCcEEEEeCCh--HHHHHHHHHHHHcCCCceEEEEccCCCCcc---------
Q 019324 164 SSWSVLDIGTG-NGLL----LQELSKQGFSDLTGVDYSE--DAINLAQSLANRDGFSCIKFLVDDVLDTKL--------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG-~G~~----~~~la~~g~~~v~gvD~s~--~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------- 227 (343)
.++++|-.|+| ++.+ +..|++.|+ +|+.++.+. ..++...+. .+ .++.++.+|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~---~~-~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKR---LP-EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHh---cC-CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999984 3444 444555676 788888763 333333322 22 256788899987531
Q ss_pred --CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324 228 --ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS 274 (343)
Q Consensus 228 --~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~ 274 (343)
-+.+|+++.+..+... .+......+. ..+.+.+...|+++|.++..+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 2579999987654211 0111111111 134456677778888776643
No 478
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=72.25 E-value=75 Score=29.19 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChH---HHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccE
Q 019324 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQL 233 (343)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~---~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~ 233 (343)
+++++|-+|+| |. .+..|+..|+.+|+.++.++. ..+...+.+...+ ..+.+...|+.+.. .-..+|+
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV-PECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC-CCceeEEechhhhhHHHhhhccCCE
Confidence 46789999997 53 233455668767999999852 2222222222221 23445556655321 1135799
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 288 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~ 288 (343)
|+..-++.. ++...... +.. ...|.++..++=..+++....+++..+.
T Consensus 203 lINaTp~Gm---~~~~~~~~---~~~-~~~l~~~~~v~D~vY~P~~T~ll~~A~~ 250 (289)
T PRK12548 203 LVNATLVGM---KPNDGETN---IKD-TSVFRKDLVVADTVYNPKKTKLLEDAEA 250 (289)
T ss_pred EEEeCCCCC---CCCCCCCC---CCc-HHhcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 887554432 12111100 000 1345666654445566666677766654
No 479
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.11 E-value=67 Score=28.04 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=57.4
Q ss_pred CCeEEEEccCcc---HHHHHHHhcCCCcEEEEe-CChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVD-YSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD-~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+.+||-.|++.| .++..++++|+ +++.+. .++.......+.....+ .++.++.+|+.+... -+
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENG-GEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcC-CeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 568998886544 23444555676 565543 34333333323333333 256778888876531 14
Q ss_pred CccEEEECccccccc-cCCCChhh-----------HHHHHHHHhhccCCCcEEEEEec
Q 019324 230 QFQLVMDKGTLDAIG-LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 230 ~fD~V~~~~~l~~i~-~~~~~~~~-----------~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
..|.|+.+....... ........ ...+.+.+.+.++++|.+++.+.
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 679998876432110 00011111 23445666777777788777533
No 480
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.06 E-value=11 Score=35.10 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=54.0
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccC---CCCccCCCccEEEE
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV---LDTKLERQFQLVMD 236 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~---~~~~~~~~fD~V~~ 236 (343)
.++.+||-.|||. |..+..+++. |...|++++-++.-.+.+++. +... +.....+. .+....+.+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 4567888877643 4455556655 544688888777666665542 2211 11111111 11112356899986
Q ss_pred CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
...- . ..+..+.++|+++|.++....
T Consensus 238 ~~g~----------~---~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 238 MSGN----------P---KAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCC----------H---HHHHHHHHHhccCCEEEEEcc
Confidence 4211 1 134677889999999887543
No 481
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=72.00 E-value=9.5 Score=36.03 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=56.5
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc---C----CCCccCCCcc
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD---V----LDTKLERQFQ 232 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D---~----~~~~~~~~fD 232 (343)
..++.+||-.|+| .|..+..+++. |...|++++-++...+.+++ .+.. .++..+ . ........+|
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~--~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT--HTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe--EEeCCCCccHHHHHHHHcCCCCCC
Confidence 3567889888874 45555666655 66459999988887776643 2221 111111 1 1111135689
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+++....- ...+..+.+.|+++|+++....
T Consensus 254 ~vld~~~~-------------~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 254 YAFEAVGR-------------AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EEEEcCCC-------------hHHHHHHHHHhhcCCeEEEEec
Confidence 88853210 1234788899999999887543
No 482
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.99 E-value=68 Score=28.02 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCeEEEEccCcc---HHHHHHHhcCCCcEEE-EeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 165 SWSVLDIGTGNG---LLLQELSKQGFSDLTG-VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~g-vD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
++++|-.|++.| .++..++++|+ +|+. .+-++...+.+.+.....+ .++.++.+|+.+... -+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467888887544 24455556676 6665 3445555544444444334 368889999887531 13
Q ss_pred CccEEEECcc
Q 019324 230 QFQLVMDKGT 239 (343)
Q Consensus 230 ~fD~V~~~~~ 239 (343)
..|+++.+..
T Consensus 82 ~id~vi~~ag 91 (250)
T PRK08063 82 RLDVFVNNAA 91 (250)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 483
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.96 E-value=25 Score=36.27 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=45.3
Q ss_pred CCeEEEEccCc-cHH-HHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEE
Q 019324 165 SWSVLDIGTGN-GLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD 236 (343)
Q Consensus 165 ~~~VLDiGcG~-G~~-~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~ 236 (343)
..+|+=+|||. |.. +..|.+.|. .++.+|.++..++.+++ .....+.+|.++... -+..|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK-------FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh-------cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 46788888874 332 333444465 89999999999998876 256789999998742 246777775
No 484
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=71.94 E-value=9.7 Score=36.05 Aligned_cols=97 Identities=21% Similarity=0.152 Sum_probs=55.5
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEcc--CCC-C--ccCCCccE
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDD--VLD-T--KLERQFQL 233 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D--~~~-~--~~~~~fD~ 233 (343)
..++.+||-+|+| .|.++..+++. |...|+++|.++.-.+.+++ .|...+ .....+ +.+ . .....+|+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~ 257 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDY 257 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCE
Confidence 4678899998874 23344445554 65579999999888887764 232111 111100 000 0 01245888
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 275 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~ 275 (343)
|+....- . ..+....+.|+++ |.+++...
T Consensus 258 vid~~g~----------~---~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 258 SFECTGN----------A---DLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEECCCC----------h---HHHHHHHHhcccCCCEEEEEcC
Confidence 8853210 0 2347788889885 98887543
No 485
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.63 E-value=20 Score=33.18 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=57.3
Q ss_pred CeEEEEccCc--cHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324 166 WSVLDIGTGN--GLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (343)
Q Consensus 166 ~~VLDiGcG~--G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~ 242 (343)
.+|.=||+|. +.++..+...|. ..|+++|.++..++.+++ .+. ... ...+..+ .-...|+|+..-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~-~~~-~~~~~~~--~~~~aDvViiavp~~- 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL-GDR-VTTSAAE--AVKGADLVILCVPVG- 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC-Cce-ecCCHHH--HhcCCCEEEECCCHH-
Confidence 4789999886 234555555564 379999999987776653 232 111 1112111 124578888643322
Q ss_pred cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
....+++.+...+++|.+++.. ...+....+.+.
T Consensus 78 ---------~~~~v~~~l~~~l~~~~iv~dv--gs~k~~~~~~~~ 111 (307)
T PRK07502 78 ---------ASGAVAAEIAPHLKPGAIVTDV--GSVKASVIAAMA 111 (307)
T ss_pred ---------HHHHHHHHHHhhCCCCCEEEeC--ccchHHHHHHHH
Confidence 2234567777788888755432 333444444443
No 486
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.57 E-value=35 Score=31.97 Aligned_cols=96 Identities=20% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccC-------CCCccCCCcc
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDV-------LDTKLERQFQ 232 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~-------~~~~~~~~fD 232 (343)
.++.+||-.|+| .|..+..+++. |..+|++++.++.-.+.+++ .|...+ .....+. ........+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 367788888764 23334445554 65479999988877666643 233211 1111011 0111124689
Q ss_pred EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
+|+....- ...+....++|+++|+++....
T Consensus 252 ~vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASGH-------------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCCC-------------hHHHHHHHHHhccCCEEEEEcC
Confidence 88863211 0234677889999999987643
No 487
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=71.57 E-value=20 Score=33.27 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=54.9
Q ss_pred CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccC----CCCccCCCccEEE
Q 019324 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDV----LDTKLERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~----~~~~~~~~fD~V~ 235 (343)
.++.+||-.|+|. |..+..+++. |...|++++-++...+.+++. |...+ .....+. ........+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 3567888777653 4555556655 654688888888777666542 32111 0011111 0111134688888
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
....- ...+..+.++|+++|.++....
T Consensus 238 d~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 238 EMSGA-------------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 62211 1234778889999999988654
No 488
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=71.56 E-value=12 Score=34.86 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=63.7
Q ss_pred CCCeEEEEccCc-cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324 164 SSWSVLDIGTGN-GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (343)
Q Consensus 164 ~~~~VLDiGcG~-G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~ 241 (343)
++.+|.-||.|. |..+..++-..-..|+-+|+|..-+......+. .++.........+.. -.+.|++|.--.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~----~rv~~~~st~~~iee~v~~aDlvIgaVLI- 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG----GRVHTLYSTPSNIEEAVKKADLVIGAVLI- 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----ceeEEEEcCHHHHHHHhhhccEEEEEEEe-
Confidence 456777888874 556666665523489999999887777665442 256666665544432 3578998863211
Q ss_pred ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324 242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273 (343)
Q Consensus 242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~ 273 (343)
.+...+....+++.+.+|||+.++=.
T Consensus 242 ------pgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 242 ------PGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ------cCCCCceehhHHHHHhcCCCcEEEEE
Confidence 11233334568999999999987643
No 489
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=71.49 E-value=24 Score=33.46 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=56.4
Q ss_pred cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEc--cCCCC---ccCCCccE
Q 019324 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD--DVLDT---KLERQFQL 233 (343)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~--D~~~~---~~~~~fD~ 233 (343)
..++.+||-.|+| .|.++..+++. |...|+++|.++.-.+.+++ .|... +..... ++.+. ...+.+|+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCcE
Confidence 4678899999874 23444555554 65479999999998887764 23321 111110 01110 01236888
Q ss_pred EEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324 234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 275 (343)
Q Consensus 234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~ 275 (343)
|+..-.- ...+....+.|+++ |++++...
T Consensus 260 vid~~g~-------------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 260 TFECIGN-------------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEECCCC-------------hHHHHHHHHhhccCCCeEEEEcc
Confidence 8863110 12347778899887 98887543
No 490
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.40 E-value=75 Score=28.29 Aligned_cols=74 Identities=23% Similarity=0.143 Sum_probs=45.3
Q ss_pred CCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324 164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (343)
Q Consensus 164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------- 227 (343)
.++++|-.|++. | .++..|++.|+ +|+.++.++...+.+++.....+ ...++.+|+.+...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g--~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIG--CNFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcC--CceEEEccCCCHHHHHHHHHHHHHH
Confidence 467889999965 3 24556677787 78888876543333333333223 22356789887531
Q ss_pred CCCccEEEECccc
Q 019324 228 ERQFQLVMDKGTL 240 (343)
Q Consensus 228 ~~~fD~V~~~~~l 240 (343)
-+..|+++.+...
T Consensus 84 ~g~iDilVnnag~ 96 (260)
T PRK06603 84 WGSFDFLLHGMAF 96 (260)
T ss_pred cCCccEEEEcccc
Confidence 2578998886543
No 491
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.36 E-value=15 Score=32.46 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=46.0
Q ss_pred CCCCeEEEEccCccHHHHHHHh----cCCCcEEEEeCC-hHHHHHHHHHHHHcCCCceEEEEccCCCCc-----------
Q 019324 163 LSSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTK----------- 226 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~----~g~~~v~gvD~s-~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----------- 226 (343)
..++.||-.||..|.++..|+. .|+ .|+++--+ +.|-+.+.+ .++.....|+.+..
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~-------~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQ-------FGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHh-------hCCeeEEeccCChHHHHHHHHHHhh
Confidence 4577999999999988777665 476 78888665 333333332 24566777776652
Q ss_pred -cCCCccEEEECc
Q 019324 227 -LERQFQLVMDKG 238 (343)
Q Consensus 227 -~~~~fD~V~~~~ 238 (343)
.+++.|+.+-|.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 257888888764
No 492
>PRK07814 short chain dehydrogenase; Provisional
Probab=71.23 E-value=24 Score=31.46 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=50.4
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
+++++|-.|++.| .++..|+++|+ +|++++.++..++...+.....+ .++.++.+|+.+... -+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678998886543 23445566687 89999999877666555544433 368888999887531 14
Q ss_pred CccEEEECcc
Q 019324 230 QFQLVMDKGT 239 (343)
Q Consensus 230 ~fD~V~~~~~ 239 (343)
.+|+|+.+..
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899987653
No 493
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.20 E-value=7.8 Score=36.94 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=60.4
Q ss_pred CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC---CCccEEEEC
Q 019324 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---RQFQLVMDK 237 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~---~~fD~V~~~ 237 (343)
.++.+|+|++|-.|+-+.+++.- ...+++|+|.+..-.+..++.+...|+..++...+|+.....+ .....|++.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~iL~D 291 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYILVD 291 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEEEeC
Confidence 56799999999999988887764 2348999999999999999999888987888889998885322 234455554
Q ss_pred ccc
Q 019324 238 GTL 240 (343)
Q Consensus 238 ~~l 240 (343)
...
T Consensus 292 psc 294 (413)
T KOG2360|consen 292 PSC 294 (413)
T ss_pred CCC
Confidence 433
No 494
>PRK07774 short chain dehydrogenase; Provisional
Probab=71.20 E-value=29 Score=30.43 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (343)
Q Consensus 164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~ 229 (343)
.++++|-.|+..| .++..+++.|+ +|+.++-++...+...+.....+ .++.++..|+.+... -+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3568888885433 23444555676 89999998776655555443333 257788899987631 13
Q ss_pred CccEEEECccc
Q 019324 230 QFQLVMDKGTL 240 (343)
Q Consensus 230 ~fD~V~~~~~l 240 (343)
..|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999987653
No 495
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=71.11 E-value=24 Score=31.21 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324 163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (343)
Q Consensus 163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~ 228 (343)
..+++||-.|++.| .+...|+++|+ +++.++.+...++.+.......+ .++.++.+|+.+... -
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 34789999997766 24555666776 78889988777766655444434 267888999887531 1
Q ss_pred CCccEEEECcc
Q 019324 229 RQFQLVMDKGT 239 (343)
Q Consensus 229 ~~fD~V~~~~~ 239 (343)
+.+|+++.+..
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 46898987654
No 496
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=70.98 E-value=43 Score=31.06 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=54.4
Q ss_pred CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCC----CCccCCCccEEE
Q 019324 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL----DTKLERQFQLVM 235 (343)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~----~~~~~~~fD~V~ 235 (343)
.++.+||-.|+| .|..+..+++. |...|++++-++...+.+++. +... +.....++. .......+|+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 457788777664 34455555555 653488998888777766542 2211 111111110 111134689998
Q ss_pred ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275 (343)
Q Consensus 236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~ 275 (343)
....- . ..+..+.+.|+++|.++....
T Consensus 236 d~~g~----------~---~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 236 EMSGA----------P---KALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ECCCC----------H---HHHHHHHHhhcCCCEEEEEcc
Confidence 64111 1 234778899999999887643
No 497
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.88 E-value=32 Score=31.80 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=30.2
Q ss_pred CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHH
Q 019324 166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (343)
Q Consensus 166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~ 206 (343)
.+|.=||+|.- .++..++..|+ +|+++|.++..++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 46888899853 34555666676 899999999998888764
No 498
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.76 E-value=43 Score=35.14 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=70.4
Q ss_pred CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cC----------CCceEEEEccCCCCc
Q 019324 166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG----------FSCIKFLVDDVLDTK 226 (343)
Q Consensus 166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~----------~~~i~~~~~D~~~~~ 226 (343)
.+|.-||+|+= .++..++..|+ .|+.+|.++..++.++.++.. .| ..++++. .|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 57999999983 45566677787 899999999999887665432 11 0123322 22211
Q ss_pred cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287 (343)
Q Consensus 227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~ 287 (343)
-...|+|+-. + ++.......++.++-++++|+.+|...+......++...+.
T Consensus 390 -~~~aDlViEa-----v---~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~ 441 (715)
T PRK11730 390 -FERVDVVVEA-----V---VENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALK 441 (715)
T ss_pred -hcCCCEEEec-----c---cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC
Confidence 1456777753 3 12334556788999999999987766666666666666543
No 499
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=70.68 E-value=64 Score=30.21 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=45.2
Q ss_pred CCCCeEEEEccCccHHHHHHH----hcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEE
Q 019324 163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV 234 (343)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la----~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V 234 (343)
..+.+||-.|. +|.++..++ +.|+ +|++++-++............ + .++.++.+|+.+... -..+|.|
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKE-G-DRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhcc-C-CeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 45778998884 565555444 4576 799988775433332222211 2 368899999987531 2357888
Q ss_pred EECccc
Q 019324 235 MDKGTL 240 (343)
Q Consensus 235 ~~~~~l 240 (343)
+-....
T Consensus 84 ih~A~~ 89 (353)
T PLN02896 84 FHVAAS 89 (353)
T ss_pred EECCcc
Confidence 866543
No 500
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.61 E-value=45 Score=29.15 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=26.7
Q ss_pred CCCCeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCC
Q 019324 163 LSSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 196 (343)
Q Consensus 163 ~~~~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s 196 (343)
....+|+-+|||. | .++..|+..|..+++-+|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4467999999983 4 45667777788889999998
Done!