BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019326
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 29/207 (14%)
Query: 101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL- 159
R + + S+D V ++D + +L ++ H + V L + + + +T +D +A+ ++
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMA 241
Query: 160 ----VRGRRSFYHKIGKEASL--IKFDGSGEKFFMVT--EEKVGIHQAEDAKLLCELDGK 211
+ RR +G A++ + FD +K+ + + + + + + L+G
Sbjct: 242 SPTDITLRRVL---VGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295
Query: 212 KRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA 271
KR + + ++ +G D +I WD G +E H V+ I K
Sbjct: 296 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKR------ 348
Query: 272 ENPYLVASASSDGVICVWDVRMAIKEK 298
+ S + DG I VWD+ A+ +
Sbjct: 349 -----IVSGAYDGKIKVWDLVAALDPR 370
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 214 ILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN 273
+LC E V+ TG D ++ WD N+G++ + H + ++ L N+G
Sbjct: 176 VLCLQYDER-VIITGSSDSTVRVWDVNTGEMLNTL--IHHC--EAVLHLRFNNG------ 224
Query: 274 PYLVASASSDGVICVWDV 291
++ + S D I VWD+
Sbjct: 225 --MMVTCSKDRSIAVWDM 240
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 28/223 (12%)
Query: 98 SVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV 157
S P + S S D V+IF+ PF ++ H K V+ + + G L + G D + +
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 158 NLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLL-----CELDGK 211
N V G ++ + ++ SL SG F + + + I A K + L +
Sbjct: 218 NGVDGTKT---GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274
Query: 212 KRILCAAPGEN---GVLFTGGEDRSITAWDTNSGKVAYC------IEDAHSARVKGIVVL 262
K I E+ G+++T SI+A +G + + I+ K I L
Sbjct: 275 KTIPVGTRIEDQQLGIIWTKQALVSISA----NGFINFVNPELGSIDQVRYGHNKAITAL 330
Query: 263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA 305
+ + G T + SA ++G I WD+ I + P A
Sbjct: 331 SSSADGKT------LFSADAEGHINSWDISTGISNRVFPDVHA 367
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 222 NGVLF--TGGEDRSITAWDTNSGKVAYCIED------AHSARVKGIVVLTKNDGGSTAEN 273
+G LF TGG D +I ++ G ED AHS V G LT + G+
Sbjct: 201 DGSLFASTGG-DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG---LTWSPDGTK--- 253
Query: 274 PYLVASASSDGVICVWDVRMAIKEKPLP---------LAEAKTNSRLTCLAGSSTKSFKR 324
+ASAS+D I +W+V EK +P L T L ++ + +F
Sbjct: 254 ---IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310
Query: 325 PQIG--DSAPKGEEKA 338
P++G D G KA
Sbjct: 311 PELGSIDQVRYGHNKA 326
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA------HSARVKGIVVLTKNDGG 268
L P NG L + +D +I WD N+ + + DA H+A V+ + ++
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES- 245
Query: 269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
L S + D + +WD R KP +A T + + CL+ + F
Sbjct: 246 -------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNPYSEF 291
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE----- 272
+P +L + G DR + WD + EDA + + + GG TA+
Sbjct: 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI----HGGHTAKISDFS 385
Query: 273 ----NPYLVASASSDGVICVWDVRMAI---KEKPLPLAEAKTNS 309
P+++ S S D ++ VW + + +E +P +E +TN+
Sbjct: 386 WNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNT 429
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA------HSARVKGIVVLTKNDGG 268
L P NG L + +D +I WD N+ + + DA H+A V+ + ++
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES- 249
Query: 269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
L S + D + +WD R KP +A T + + CL+ + F
Sbjct: 250 -------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNPYSEF 295
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE----- 272
+P +L + G DR + WD + EDA + + + GG TA+
Sbjct: 334 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI----HGGHTAKISDFS 389
Query: 273 ----NPYLVASASSDGVICVWDV 291
P+++ S S D ++ VW +
Sbjct: 390 WNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA------HSARVKGIVVLTKNDGG 268
L P NG L + +D +I WD N+ + + DA H+A V+ + ++
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES- 247
Query: 269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
L S + D + +WD R KP +A T + + CL+ + F
Sbjct: 248 -------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNPYSEF 293
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE----- 272
+P +L + G DR + WD + EDA + + + GG TA+
Sbjct: 332 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI----HGGHTAKISDFS 387
Query: 273 ----NPYLVASASSDGVICVWDVRMAI---KEKPLPLAEAKTNS 309
P+++ S S D ++ VW + + +E +P +E +TN+
Sbjct: 388 WNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNT 431
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 219 PGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA 278
P + V+ TGG+D ++ WD G + + AH A + + NP +
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF--------HPSNPEHLF 297
Query: 279 SASSDGVICVWDVRMAIKEK 298
+ S DG + WD + EK
Sbjct: 298 TCSEDGSLWHWDASTDVPEK 317
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDA------HSARVKGIVVLTKNDGGSTAENPYL 276
G L + +D ++ WD N+G I DA HSA V+ + ++ L
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES--------L 244
Query: 277 VASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
S + D + +WD R KP L +A T + + CL+ + F
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHT-AEVNCLSFNPYSEF 289
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE----- 272
+P +L + G DR + WD + EDA + + + GG TA+
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI----HGGHTAKISDFS 383
Query: 273 ----NPYLVASASSDGVICVWDVRMAI 295
P+++ S S D ++ +W + I
Sbjct: 384 WNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP 274
L P +L TG D+++ WD + K+ ++H + + + N
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV--------HWSPHNE 332
Query: 275 YLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK 320
++AS+ +D + VWD+ +E+ AE L G + K
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAK 378
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDA------HSARVKGIVVLTKNDGGSTAENPYL 276
G L + +D ++ WD N+G I DA HSA V+ + ++ L
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES--------L 244
Query: 277 VASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
S + D + +WD R KP L +A T + + CL+ + F
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHT-AEVNCLSFNPYSEF 289
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE----- 272
+P +L + G DR + WD + EDA + + + GG TA+
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI----HGGHTAKISDFS 383
Query: 273 ----NPYLVASASSDGVICVW 289
P+++ S S D + +W
Sbjct: 384 WNPNEPWVICSVSEDNIXQIW 404
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP 274
L P +L TG D+++ WD + K+ ++H + + + N
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV--------HWSPHNE 332
Query: 275 YLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK 320
++AS+ +D + VWD+ +E+ AE L G + K
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAK 378
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 134
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ + K LP
Sbjct: 135 RIWDVKTGMCLKTLP 149
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 52/190 (27%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 101 K-----------CLKTLKGHSNYVF---------------------------CCNFNPQS 122
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASA 280
++ +G D S+ WD +G C++ AHS V + N GS L+ S+
Sbjct: 123 NLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHF---NRDGS------LIVSS 170
Query: 281 SSDGVICVWD 290
S DG+ +WD
Sbjct: 171 SYDGLCRIWD 180
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 134
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ + K LP
Sbjct: 135 RIWDVKTGMCLKTLP 149
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 52/190 (27%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 101 K-----------CLKTLKGHSNYVF---------------------------CCNFNPQS 122
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASA 280
++ +G D S+ WD +G C++ AHS V + N GS L+ S+
Sbjct: 123 NLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHF---NRDGS------LIVSS 170
Query: 281 SSDGVICVWD 290
S DG+ +WD
Sbjct: 171 SYDGLCRIWD 180
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 90/225 (40%), Gaps = 38/225 (16%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIF----DADPF-VLLTSVKVHKKGVNDLAVHH 140
VTSLA Q P L S S D + + D F V + S K H V D +
Sbjct: 14 VTSLATSAGQ----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 141 SGKLALTVGRDDCLAMVNLVRG---RRSFYHK-------IGKEASLIKFDGSGEKFFMVT 190
G AL+ D L + ++ G +R HK I K+AS+I GS +K V
Sbjct: 70 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW 128
Query: 191 EEKVGIHQAEDAKLLCELDGKKRILCA----APGENGVLFTGGEDRSITAWDTNSGKVAY 246
I A LL D ++ A ++ + + G D+ + AW+ N +
Sbjct: 129 T----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----F 180
Query: 247 CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
IE I LT + G+ L+ASA DG I +W++
Sbjct: 181 QIEADFIGHNSNINTLTASPDGT------LIASAGKDGEIMLWNL 219
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIF----DADPF-VLLTSVKVHKKGVNDLAVHH 140
VTSLA Q P L S S D + + D F V + S K H V D +
Sbjct: 20 VTSLATSAGQ----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 141 SGKLALTVGRDDCLAMVNLVRG---RRSFYHK-------IGKEASLIKFDGSGEKFFMVT 190
G AL+ D L + ++ G +R HK I K+AS+I GS +K V
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW 134
Query: 191 EEKVGIHQAEDAKLLCELDGKKRILCAAPGENG-----VLFTGGEDRSITAWDTNSGKVA 245
I A LL D ++ P E + + G D+ + AW+ N
Sbjct: 135 T----IKGQCLATLLGHNDWVSQVRVV-PNEKADDDSVTIISAGNDKMVKAWNLNQ---- 185
Query: 246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+ IE I LT + G+ L+ASA DG I +W++
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGT------LIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIF----DADPF-VLLTSVKVHKKGVNDLAVHH 140
VTSLA Q P L S S D + + D F V + S K H V D +
Sbjct: 20 VTSLATSAGQ----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 141 SGKLALTVGRDDCLAMVNLVRG---RRSFYHK-------IGKEASLIKFDGSGEKFFMVT 190
G AL+ D L + ++ G +R HK I K+AS+I GS +K V
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW 134
Query: 191 EEKVGIHQAEDAKLLCELDGKKRILCAAPGENG-----VLFTGGEDRSITAWDTNSGKVA 245
I A LL D ++ P E + + G D+ + AW+ N
Sbjct: 135 T----IKGQCLATLLGHNDWVSQVRVV-PNEKADDDSVTIISAGNDKMVKAWNLNQ---- 185
Query: 246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+ IE I LT + G+ L+ASA DG I +W++
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGT------LIASAGKDGEIMLWNL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIF----DADPF-VLLTSVKVHKKGVNDLAVHH 140
VTSLA Q P L S S D + + D F V + S K H V D +
Sbjct: 20 VTSLATSAGQ----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 141 SGKLALTVGRDDCLAMVNLVRG---RRSFYHK-------IGKEASLIKFDGSGEKFFMVT 190
G AL+ D L + ++ G +R HK I K+AS+I GS +K V
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW 134
Query: 191 EEKVGIHQAEDAKLLCELDGKKRILCAAPGENG-----VLFTGGEDRSITAWDTNSGKVA 245
I A LL D ++ P E + + G D+ + AW+ N
Sbjct: 135 T----IKGQCLATLLGHNDWVSQVRVV-PNEKADDDSVTIISAGNDKMVKAWNLNQ---- 185
Query: 246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+ IE I LT + G+ L+ASA DG I +W++
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGT------LIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIF----DADPF-VLLTSVKVHKKGVNDLAVHH 140
VTSLA Q P L S S D + + D F V + S K H V D +
Sbjct: 20 VTSLATSAGQ----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 141 SGKLALTVGRDDCLAMVNLVRG---RRSFYHK-------IGKEASLIKFDGSGEKFFMVT 190
G AL+ D L + ++ G +R HK I K+AS+I GS +K V
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW 134
Query: 191 EEKVGIHQAEDAKLLCELDGKKRILCAAPGENG-----VLFTGGEDRSITAWDTNSGKVA 245
I A LL D ++ P E + + G D+ + AW+ N
Sbjct: 135 T----IKGQCLATLLGHNDWVSQVRVV-PNEKADDDSVTIISAGNDKMVKAWNLNQ---- 185
Query: 246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+ IE I LT + G+ L+ASA DG I +W++
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGT------LIASAGKDGEIMLWNL 225
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 172 KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED 231
K +LI G F ++ K G ++ L+C + P + V+ +G ED
Sbjct: 45 KFMALICEASGGGAFLVLPLGKTG-RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED 103
Query: 232 RSITAWDTNSGKVAYCIE------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV 285
++ W+ G + + + H+ RV GIV TA+N ++ SA D V
Sbjct: 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWH-----PTAQN--VLLSAGCDNV 155
Query: 286 ICVWDV 291
I VWDV
Sbjct: 156 ILVWDV 161
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 148
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 149 RIWDVKTGKCLKTLP 163
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 115 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 136
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 186
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 187 DGLCRIWD 194
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 127
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 128 RIWDVKTGKCLKTLP 142
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 94 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 115
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 165
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 166 DGLCRIWD 173
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 137
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 138 RIWDVKTGKCLKTLP 152
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 104 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 125
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 175
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 176 DGLCRIWD 183
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 132
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 133 RIWDVKTGKCLKTLP 147
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 99 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 120
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 170
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 171 DGLCRIWD 178
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV 288
+D+++ WD +SGK ++ HS V +++ L+ S S D + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSN---------LIVSGSFDESVRI 139
Query: 289 WDVRMAIKEKPLP 301
WDV+ K LP
Sbjct: 140 WDVKTGKCLKTLP 152
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 104 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 125
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 175
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 176 DGLCRIWD 183
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 130
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 131 RIWDVKTGKCLKTLP 145
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 97 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 118
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 168
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 169 DGLCRIWD 176
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 131
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 132 RIWDVKTGKCLKTLP 146
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 98 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 119
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 169
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 170 DGLCRIWD 177
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 137
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 138 RIWDVKTGKCLKTLP 152
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 104 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 125
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 175
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 176 DGLCRIWD 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 131
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 132 RIWDVKTGKCLKTLP 146
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 98 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 119
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 169
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 170 DGLCRIWD 177
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 134
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 135 RIWDVKTGKCLKTLP 149
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 52/190 (27%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L ++SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 101 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 122
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASA 280
++ +G D S+ WD +GK C++ AHS V + N GS L+ S+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHF---NRDGS------LIVSS 170
Query: 281 SSDGVICVWD 290
S DG+ +WD
Sbjct: 171 SYDGLCRIWD 180
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 136
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 137 RIWDVKTGKCLKTLP 151
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 103 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 124
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 174
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 175 DGLCRIWD 182
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 191 EEKVGIHQAEDAKLLCEL---DGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC 247
++ + ++ + + K L +L DG L A G G+L +G DR++ WD G +
Sbjct: 141 DKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHV 198
Query: 248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLP 301
E H++ V+ + ++ +N + + S D + VW + KE +P
Sbjct: 199 FE-GHNSTVRCLDIV-------EYKNIKYIVTGSRDNTLHVWKLP---KESSVP 241
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV 288
+D+++ WD +SGK ++ HS V +++ L+ S S D + +
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSN---------LIVSGSFDESVRI 155
Query: 289 WDVRMAIKEKPLP 301
WDV+ K LP
Sbjct: 156 WDVKTGKCLKTLP 168
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 48/189 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 120 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 141
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 191
Query: 283 DGVICVWDV 291
DG+ +WD
Sbjct: 192 DGLCRIWDT 200
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 134
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 135 RIWDVKTGKCLKTLP 149
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 52/190 (27%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 101 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 122
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASA 280
++ +G D S+ WD +GK C++ AHS V + N GS L+ S+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHF---NRDGS------LIVSS 170
Query: 281 SSDGVICVWD 290
S DG+ +WD
Sbjct: 171 SYDGLCRIWD 180
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 191 EEKVGIHQAEDAKLLCEL---DGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC 247
++ + ++ + + K L +L DG L A G G+L +G DR++ WD G +
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHV 198
Query: 248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLP 301
E H++ V+ + ++ +N + + S D + VW + KE +P
Sbjct: 199 FE-GHNSTVRCLDIV-------EYKNIKYIVTGSRDNTLHVWKLP---KESSVP 241
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVI 286
+D+++ WD +SGK ++ HS V NP L+ S S D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLK-GHSNYV-----------FCCNFNPQSNLIVSGSFDESV 134
Query: 287 CVWDVRMAIKEKPLP 301
+WDV+ K LP
Sbjct: 135 RIWDVKTGKCLKTLP 149
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 101 K-----------CLKTLKGHSNYVFC---------------------------CNFNPQS 122
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 172
Query: 283 DGVICVWD 290
DG+ +WD
Sbjct: 173 DGLCRIWD 180
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 172 KEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRIL--CAAPGENGVLFTG 228
K S +KF +GE + +K + I A D K + G K + A ++ +L +
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV 288
+D+++ WD +SGK ++ HS V +++ L+ S S D + +
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSN---------LIVSGSFDESVRI 157
Query: 289 WDVRMAIKEKPLP 301
WDV+ K LP
Sbjct: 158 WDVKTGKCLKTLP 170
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 48/189 (25%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG 162
L S+SAD + I+ A ++ HK G++D+A L ++ D L + ++ G
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN 222
+ L G F C ++
Sbjct: 122 K-----------CLKTLKGHSNYVF---------------------------CCNFNPQS 143
Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
++ +G D S+ WD +GK + AHS V + N GS L+ S+S
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF---NRDGS------LIVSSSY 193
Query: 283 DGVICVWDV 291
DG+ +WD
Sbjct: 194 DGLCRIWDT 202
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 219 PGENGVLFTGGEDRSITAWDTNSGKVAYCIE------DAHSARVKGIVVLTKNDGGSTAE 272
P + V+ +G ED ++ W+ G + + + H+ RV GIV TA+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWH-----PTAQ 144
Query: 273 NPYLVASASSDGVICVWDV 291
N ++ SA D VI VWDV
Sbjct: 145 N--VLLSAGXDNVILVWDV 161
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 88/226 (38%), Gaps = 40/226 (17%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIF----DADPF-VLLTSVKVHKKGVNDLAVHH 140
VTSLA Q P L S S D + + D F V + S K H V D +
Sbjct: 20 VTSLATSAGQ----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 141 SGKLALTVGRDDCLAMVNLVRG---RRSFYHK-------IGKEASLIKFDGSGEKFFMVT 190
G AL+ D L + ++ G +R HK I K+AS I GS +K V
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI-ISGSRDKTIKVW 134
Query: 191 EEKVGIHQAEDAKLLCELDGKKRILCAAPGENG-----VLFTGGEDRSITAWDTNSGKVA 245
I A LL D ++ P E + + G D+ + AW+ N
Sbjct: 135 T----IKGQCLATLLGHNDWVSQVRVV-PNEKADDDSVTIISAGNDKXVKAWNLNQ---- 185
Query: 246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+ IE I LT + G+ L+ASA DG I +W++
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGT------LIASAGKDGEIXLWNL 225
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 30/223 (13%)
Query: 86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---------FVLLTSVKVHKKGVNDL 136
VTSLA PQ + STS D + + +P + ++ H V+D+
Sbjct: 16 VTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDV 73
Query: 137 AVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGI 196
A+ ++G A++ D L + NL G+ Y +G ++ S + +V+ +
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQ-YKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 197 HQAEDAKLLC--------ELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCI 248
+ + K C D + + + V+ +GG D + WD +G++ +
Sbjct: 133 LRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
Query: 249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+ H+ V + V DG L AS+ DGV +WD+
Sbjct: 193 K-GHTNYVTSVTV--SPDGS-------LCASSDKDGVARLWDL 225
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV 277
+P + T G DR I+ +D SG+ IED GI L+ D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-------F 267
Query: 278 ASASSDGVICVWDV 291
A+ +D I VWDV
Sbjct: 268 ATVGADATIRVWDV 281
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 18/70 (25%)
Query: 229 GEDRSITAWDT---NSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY---LVASASS 282
+D+ + WDT N+ K ++ + DAH+A V + NPY ++A+ S+
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSV-DAHTAEVNCLSF-----------NPYSEFILATGSA 294
Query: 283 DGVICVWDVR 292
D + +WD+R
Sbjct: 295 DKTVALWDLR 304
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE----- 272
+P +L + G DR + WD + EDA + + + GG TA+
Sbjct: 326 SPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFI----HGGHTAKISDFS 381
Query: 273 ----NPYLVASASSDGVICVWDVRMAI 295
P+++ S S D ++ VW + I
Sbjct: 382 WNPNEPWVICSVSEDNIMQVWQMAENI 408
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNS----GKV--AYCIEDAHSARVKGIVVLTKNDGG 268
L P +G L + +D +I WD ++ GKV A I H+A V+ + ++
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES- 241
Query: 269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
L S + D + +WD R KP +A T + + CL+ + F
Sbjct: 242 -------LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT-AEVNCLSFNPYSEF 287
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV 277
+P + T G DR I+ +D SG+ IED GI L+ D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-------F 267
Query: 278 ASASSDGVICVWDV 291
A+ +D I VWDV
Sbjct: 268 ATVGADATIRVWDV 281
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 45/156 (28%)
Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDT 239
D + + F T EK+ +A + ++LC CA ++ + T D+ + WD+
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLC---------CAFSSDDSYIATCSADKKVKIWDS 686
Query: 240 NSGKVAYCIEDAHSARVKGIVVLTKNDGG--STAENPY---------------------- 275
+GK+ + D HS +V K++ +T N +
Sbjct: 687 ATGKLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745
Query: 276 -----------LVASASSDGVICVWDVRMAIKEKPL 300
L+AS S+DG + +WDVR A + K +
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 45/156 (28%)
Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDT 239
D + + F T EK+ +A + ++LC CA ++ + T D+ + WD+
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLC---------CAFSSDDSYIATCSADKKVKIWDS 693
Query: 240 NSGKVAYCIEDAHSARVKGIVVLTKNDGG--STAENPY---------------------- 275
+GK+ + D HS +V K++ +T N +
Sbjct: 694 ATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 752
Query: 276 -----------LVASASSDGVICVWDVRMAIKEKPL 300
L+AS S+DG + +WDVR A + K +
Sbjct: 753 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 788
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 205 LCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTK 264
L L G + +C+ ++GV+ +G D++ W G + Y ++ AH+A V V+
Sbjct: 97 LYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW--KEGSLVYNLQ-AHNASVWDAKVV-- 151
Query: 265 NDGGSTAENPYLVASASSDGVICVWDVRMAIK 296
S +EN +L ASA D I +W IK
Sbjct: 152 ----SFSENKFLTASA--DKTIKLWQNDKVIK 177
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK-EASLIKFD 180
L S++ H+ GV + + H+ +A + D + + +L G++ G +A + F
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAF- 130
Query: 181 GSGEKFFMVTEEKVG---IHQAEDAKLLCELDGK-KRILCAAPGENG-VLFTGGEDRSIT 235
S + ++ T VG I E K LD + K IL A +G L +G D I
Sbjct: 131 -SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA 294
+D +GK+ + +E H+ ++ + + + L+ +AS DG I ++DV+ A
Sbjct: 190 IFDIATGKLLHTLE-GHAMPIRSLTF---------SPDSQLLVTASDDGYIKIYDVQHA 238
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 80/207 (38%), Gaps = 22/207 (10%)
Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL--- 159
+ S S D + ++D + ++K H V D++ HSGKL + D + + +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 160 --VRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDG-KKRIL 215
+R H + S + +G+ + +K + + + + + G ++ +
Sbjct: 183 ECIRTMHGHDHNV----SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 216 CAAPGENGVLFTG-GEDRSITAWDTNSGK----------VAYCIEDAHSARVKGIVVLTK 264
P ++G L D+++ W + + V CI A + I T
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 265 NDGGSTAENPYLVASASSDGVICVWDV 291
++ + + + S S D I +WDV
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDV 325
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 39/186 (20%)
Query: 146 LTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD----------GSGEKFFMVTEEKVG 195
L G +D L + + R+ G E + D GSG++ + + + G
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197
Query: 196 IHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR 255
L ++ + +PG+ + G DR++ WD+ +G + +E S
Sbjct: 198 -----QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSEN 249
Query: 256 VKGI--------VVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKT 307
G VV T+ DG S V S S D + +W+++ A + +++KT
Sbjct: 250 ESGTGHKDSVYSVVFTR-DGQS-------VVSGSLDRSVKLWNLQNANNK-----SDSKT 296
Query: 308 NSRLTC 313
+ TC
Sbjct: 297 PNSGTC 302
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 105 STSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLA---MVNLVR 161
S DG + +++ + F + + K H+ VN L++ +GK T G+D L ++NL
Sbjct: 189 SVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247
Query: 162 GRRSF 166
+R F
Sbjct: 248 PQREF 252
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 24/137 (17%)
Query: 194 VGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE--DA 251
+ + E + L G + + ++ +L +G D ++ WD +G+ ++ +
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 252 HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA------ 305
H + V + N V ++S DG + +WD++ + L E+
Sbjct: 361 HQSAVTCLQF-----------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Query: 306 -----KTNSRLTCLAGS 317
+N++L C GS
Sbjct: 410 VWRIRASNTKLVCAVGS 426
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 104 FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR 163
FS +DG ++++D L+ + H G + + + + G T G D+ + +L GR
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 164 RSFYHKIGKEASLIKFDGSGE 184
+ H + + + +GE
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGE 237
>pdb|2GP4|A Chain A, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
pdb|2GP4|B Chain B, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
Length = 628
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD 290
V GIV L GGST ++VA+A + G+I WD
Sbjct: 308 VNGIVALLAT-GGSTNLTXHIVAAARAAGIIVNWD 341
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDT 239
D + + F T EK+ +A + ++LC CA ++ + T D+ + W++
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLC---------CAFSTDDRFIATCSVDKKVKIWNS 692
Query: 240 NSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
+G++ + D HS +V + + + L+A+ SSD + +WD+
Sbjct: 693 MTGELVHTY-DEHSEQVNCC-------HFTNSSHHLLLATGSSDCFLKLWDL 736
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 214 ILCA--APGENGVLF-TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGST 270
+LC AP E G F +GG D+ WD SG+ E H + V + D
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDA--- 254
Query: 271 AENPYLVASASSDGVICVWDVR 292
AS S D ++D+R
Sbjct: 255 ------FASGSDDATCRLYDLR 270
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 227 TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI 286
+GG+D S+ WD S K +AHS+ V + D + S DG I
Sbjct: 156 SGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVAACPGKD--------TIFLSCGEDGRI 206
Query: 287 CVWDVRMAIKEKPLP 301
+WD R KP P
Sbjct: 207 LLWDTR-----KPKP 216
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVA----YCIED 250
+ A PG++ + + GED I WDT K A +C D
Sbjct: 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASD 226
>pdb|2QJ6|A Chain A, Crystal Structure Analysis Of A 14 Repeat C-Terminal
Fragment Of Toxin Tcda In Clostridium Difficile
pdb|2QJ6|B Chain B, Crystal Structure Analysis Of A 14 Repeat C-Terminal
Fragment Of Toxin Tcda In Clostridium Difficile
Length = 332
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 224 VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIV 260
+ + G +++T W T +GKV Y + D A G+
Sbjct: 279 IYYFGNNSKAVTGWQTINGKVYYFMPDTAMAAAGGLF 315
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 219 PGENGVLFTGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV 277
P + L TG D++ WD +G +++ + S ++ L+ N + N +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN-----SLNANMF 221
Query: 278 ASASSDGVICVWDVRM 293
S S D + +WD+R+
Sbjct: 222 ISGSCDTTVRLWDLRI 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,809,927
Number of Sequences: 62578
Number of extensions: 379708
Number of successful extensions: 1274
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 143
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)