Your job contains 1 sequence.
>019327
MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW
GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD
DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG
QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP
TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ
PGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019327
(342 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 1085 7.8e-110 1
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 925 7.0e-93 1
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi... 410 4.8e-52 2
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 387 4.0e-35 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 370 4.6e-34 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 370 4.6e-34 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 371 6.3e-34 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 372 7.6e-34 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 372 7.9e-34 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 367 9.5e-34 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 372 1.1e-33 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 372 1.1e-33 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 372 1.1e-33 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 372 1.1e-33 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 372 1.1e-33 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 371 1.3e-33 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 371 1.3e-33 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 371 1.4e-33 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 370 1.6e-33 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 370 1.7e-33 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 369 2.8e-33 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 362 6.7e-33 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 358 5.3e-32 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 329 5.0e-29 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 322 5.6e-29 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 327 8.8e-29 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 322 2.0e-28 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 322 2.6e-28 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 315 3.1e-28 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 315 3.7e-28 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 318 7.1e-28 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 318 7.1e-28 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 313 7.2e-28 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 317 9.2e-28 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 317 9.2e-28 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 317 9.5e-28 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 313 1.3e-27 1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 310 1.5e-27 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 310 2.0e-27 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 310 2.0e-27 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 265 2.4e-27 2
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 313 2.6e-27 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 312 3.2e-27 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 310 3.5e-27 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 310 3.5e-27 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 310 3.5e-27 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 310 3.5e-27 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 310 3.5e-27 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 311 4.1e-27 1
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 311 4.4e-27 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 310 5.4e-27 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 310 5.4e-27 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 308 5.9e-27 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 308 6.2e-27 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 308 6.5e-27 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 308 9.0e-27 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 306 1.4e-26 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 306 1.5e-26 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 305 1.9e-26 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 304 2.4e-26 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 302 3.9e-26 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 266 7.3e-25 2
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 275 7.0e-23 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 217 7.5e-17 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 206 4.2e-15 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 165 4.9e-15 2
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 189 7.9e-15 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 206 2.2e-14 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 204 4.2e-14 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 204 4.2e-14 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 204 4.2e-14 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 202 8.1e-14 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 201 1.1e-13 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 176 2.8e-13 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 190 4.3e-13 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 191 5.1e-13 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 191 7.7e-13 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 192 1.3e-12 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 191 1.6e-12 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 190 2.1e-12 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 190 2.2e-12 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 190 2.2e-12 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 190 2.2e-12 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 185 2.3e-12 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 189 3.4e-12 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 189 3.4e-12 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 189 3.4e-12 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 188 4.0e-12 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 187 5.2e-12 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 187 5.3e-12 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 187 5.3e-12 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 187 5.4e-12 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 186 6.4e-12 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 164 6.7e-12 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 186 7.0e-12 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 186 7.4e-12 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 185 8.8e-12 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 185 9.2e-12 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 185 9.5e-12 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 185 9.5e-12 1
WARNING: Descriptions of 633 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 208/349 (59%), Positives = 253/349 (72%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ KDSG+ KGYAFVTFR+K+LA++AI+ LN+ + +GK+IKCS QAKHRLF+GNVPRNW
Sbjct: 124 MREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNW 183
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E D++KA +IGPGV +EL K+PQN +NRGFAFIEYYNHACAEYS+QKMSNP FKLD
Sbjct: 184 MESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLD 243
Query: 121 DNAPTVSWADPRNAES--SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
DNAPTVSWA+ R+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAK
Sbjct: 244 DNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAK 303
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKS 236
PG+E SRYGFVH+AER+S M+ALKNTE+YEIDG +LDC+LAKPQADQKT+ + N QKS
Sbjct: 304 PGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKS 363
Query: 237 ALNPTYPPHXXXXXXXXXXXXXXXXXXXXXFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
L P YPP ++QP+++ G A GGM+M+P++LPDGRIGY
Sbjct: 364 QLQPNYPP-LLSYGMAPSPFGALGGFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGY 422
Query: 297 VLQQPGVQ-QHNPPPQ--PXXXXXXXXXXXXXXXXXXXXXXXXXXYNPY 342
VLQQPG+ PPP+ P YNPY
Sbjct: 423 VLQQPGLAAMPQPPPRHSPPYRGGSGSSSSSGSKRSSDNGRGRSRYNPY 471
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 174/315 (55%), Positives = 232/315 (73%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +DSG++KGYAFV F+TK++A +AIEEL+S E KGK I+CS ++ K+RLFIGN+P+NW
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNW 207
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YSRQKM + FKL+
Sbjct: 208 TEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLE 267
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG++TK+V PP K
Sbjct: 268 GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK 327
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G+ +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K S S +A
Sbjct: 328 GGKRD--FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAP 385
Query: 239 NPT--YPPHXXXXXXXXXXXXXXXXXXXXXFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
P P F+QPM+YGRGA P GM M+PMLLPDGR+GY
Sbjct: 386 TPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 445
Query: 297 VLQQPGVQQHNPPPQ 311
VLQQPG+ PPQ
Sbjct: 446 VLQQPGMPMAAAPPQ 460
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 41/192 (21%), Positives = 94/192 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ GE+D+R +IG + + L+KD +++ ++G+AF+ + A+ + +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGE-IFEVRLMKD-RDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
++ + +FK T+ S + L++ N+PK+ T+D +++ G +
Sbjct: 176 ELHSKEFK----GKTI--------RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 170 TKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQADQK 226
+ + R+R + FV + + A + + ++++G + A P++ +
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 227 TSGGSNSQKSAL 238
S + +Q AL
Sbjct: 284 HSAAA-AQVKAL 294
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 410 (149.4 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 78/101 (77%), Positives = 89/101 (88%)
Query: 112 MSNPKFKLDDNAPTVSWADPRNAES--SAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
MSNP FKLDDNAPTVSWA+ R+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
KVVIPPAKPG+E SRYGFVH+AER+S M+ALKNTE+YEID
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID 101
Score = 147 (56.8 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 267 FAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ-QHNPPPQP 312
++QP+++ G A GGM+M+P++LPDGRI YVLQQPG+ PPP+P
Sbjct: 105 YSQPLMHAGGHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRP 151
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 387 (141.3 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 77/223 (34%), Positives = 135/223 (60%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 201 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 109 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 169 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 228
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 229 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 280
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 339
Query: 243 ------PPH 245
PPH
Sbjct: 340 DYYYYGPPH 348
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 109 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 169 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 228
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 229 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 280
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 339
Query: 243 ------PPH 245
PPH
Sbjct: 340 DYYYYGPPH 348
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 371 (135.7 bits), Expect = 6.3e-34, P = 6.3e-34
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPH 245
PPH
Sbjct: 430 DYYYYGPPH 438
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 372 (136.0 bits), Expect = 7.6e-34, P = 7.6e-34
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 164 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 223
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 224 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 283
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 284 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 335
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 336 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 393
Score = 134 (52.2 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
NRG+AFI + C + + Q+ KL D+ + S A+ L+V ++
Sbjct: 167 NRGYAFITF----CGKEAAQEA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSI 215
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEK 206
PK+ T++ + E F+ + VI +P ++ GF + + + SA +A + + K
Sbjct: 216 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 275
Query: 207 YEIDGQVLDCSLAKP 221
++ G V+ A P
Sbjct: 276 VKVWGNVVTVEWADP 290
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 372 (136.0 bits), Expect = 7.9e-34, P = 7.9e-34
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 220
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 221 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 74/218 (33%), Positives = 133/218 (61%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 171 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 230
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 231 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 290
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 291 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 342
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R +A+KA+ EI+G+ ++ LAKP
Sbjct: 343 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 380
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 136 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 189
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 190 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 242
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 243 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 297
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 220
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 221 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
Score = 115 (45.5 bits), Expect = 0.00095, P = 0.00095
Identities = 45/175 (25%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 167 VFVGKIPRDLYEDELVPLFEEAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 220
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 221 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 220
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 221 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 220
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 221 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 77/239 (32%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C + + Q
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CGKEAAQ 220
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL D+ + S A+ L+V ++PK+ T++ + E F+ +
Sbjct: 221 EA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 371 (135.7 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPH 245
PPH
Sbjct: 430 DYYYYGPPH 438
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 371 (135.7 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 203 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 262
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 263 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 322
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 323 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 374
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 375 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 433
Query: 243 ------PPH 245
PPH
Sbjct: 434 DYYYYGPPH 442
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 371 (135.7 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 214 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 273
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 274 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 333
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 334 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 385
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 386 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 444
Query: 243 ------PPH 245
PPH
Sbjct: 445 DYYYYGPPH 453
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 370 (135.3 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 198 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 257
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 258 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 317
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 318 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 369
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 370 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 428
Query: 243 ------PPH 245
PPH
Sbjct: 429 DYYYYGPPH 437
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 41/179 (22%), Positives = 89/179 (49%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 163 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 220
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 221 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 268
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 269 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 327
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 370 (135.3 bits), Expect = 1.7e-33, P = 1.7e-33
Identities = 81/249 (32%), Positives = 143/249 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPH 245
PPH
Sbjct: 430 DYYYYGPPH 438
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 369 (135.0 bits), Expect = 2.8e-33, P = 2.8e-33
Identities = 75/239 (31%), Positives = 143/239 (59%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF +K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +++
Sbjct: 230 SGQNRGYAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 289
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 290 ILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 349
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 350 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 401
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 402 KDYAFVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 459
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 47/178 (26%), Positives = 88/178 (49%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C++ + Q
Sbjct: 195 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----CSKDAAQ 248
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL DN + S A+ L+V ++PK+ T++ + E F K+T
Sbjct: 249 EA----VKLCDNYE-IRPGKHLGVCISVANN--RLFVGSIPKNKTKENILEEF---NKVT 298
Query: 171 KVVIPPA---KPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
+ ++ +P ++ GF + + + SA +A + + K ++ G V+ A P
Sbjct: 299 EGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 356
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 362 (132.5 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 82/249 (32%), Positives = 138/249 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ +D
Sbjct: 200 SGLNRGYAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQ 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+ Y +H A +R+++ + K K+ N
Sbjct: 260 IVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVV 319
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 320 TVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKL 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KAL +++G+ ++ AKP DQK +++A Y
Sbjct: 372 KDYAFIHFEERDGAVKALAELHGKDLEGEPIEIVFAKPP-DQKRKERKAQRQAAKTQMYD 430
Query: 243 ------PPH 245
PPH
Sbjct: 431 EYYYYGPPH 439
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 47/178 (26%), Positives = 85/178 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + C + + Q
Sbjct: 165 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTF----CTKEAAQ 218
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
K KL +N + S A+ L+V ++PK T+D++ E FA +
Sbjct: 219 KA----VKLCNNNE-IRPGKHIGVCISVANN--RLFVGSIPKSKTKDQIVEEFAKVTEGL 271
Query: 171 KVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ GF + + + +A +A + + K ++ G V+ A P D
Sbjct: 272 NDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 329
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 358 (131.1 bits), Expect = 5.3e-32, P = 5.3e-32
Identities = 78/239 (32%), Positives = 136/239 (56%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+TF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 263 SGLNRGYAFLTFCTKEAAQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 322
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 323 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLV 382
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F G + +V ++
Sbjct: 383 TVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFGQFGNLERV--------KKL 434
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y FVHF +R A+KAL E++G+ ++ AKP DQK +++A Y
Sbjct: 435 KDYAFVHFNDRDGAVKALTEMNGKELEGEHIEIVFAKPP-DQKRKERKAQRQAAKTQMY 492
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 329 (120.9 bits), Expect = 5.0e-29, P = 5.0e-29
Identities = 70/224 (31%), Positives = 128/224 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG ++GYAFVT+ KE A+ A + + E+ GK +K + + A RLFIGN+P+ +D+
Sbjct: 237 SGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDE 296
Query: 65 MRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + + GV+ + + P N +NRGF F+++ +H A ++K++ K + +
Sbjct: 297 ILEELKTHAEGVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD 356
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+ + + S+VK LY++N+ + +T+++L ELF + + +V ++
Sbjct: 357 VYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLNELFKEYASLDRV--------KK 408
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER +KA++ E++G V++ SLAKP ++K
Sbjct: 409 VKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLAKPPQEKK 452
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 76/244 (31%), Positives = 131/244 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL 238
Y FVHF R A+ A+ N E++G L+ +LAKP Q QK + G + ++A
Sbjct: 283 -YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQ 341
Query: 239 NPTY 242
P+Y
Sbjct: 342 QPSY 345
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 327 (120.2 bits), Expect = 8.8e-29, P = 8.8e-29
Identities = 67/198 (33%), Positives = 119/198 (60%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKAL 201
Y F+HF ER A+K +
Sbjct: 371 KDYAFIHFDERDGAVKVI 388
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 322 (118.4 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 76/244 (31%), Positives = 131/244 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 70 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 129
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 130 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 189
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 190 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 244
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL 238
Y FVHF R A+ A+ N E++G L+ +LAKP Q QK + G + ++A
Sbjct: 245 -YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQ 303
Query: 239 NPTY 242
P+Y
Sbjct: 304 QPSY 307
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 322 (118.4 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 76/244 (31%), Positives = 131/244 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL 238
Y FVHF R A+ A+ N E++G L+ +LAKP Q QK + G + ++A
Sbjct: 283 -YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQ 341
Query: 239 NPTY 242
P+Y
Sbjct: 342 QPSY 345
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 78/224 (34%), Positives = 122/224 (54%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +G+AFV + TKE A AI+ LN+ E++ G+ I + RLFIG +PR +++
Sbjct: 26 SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEE 85
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K + +I GV+ + + D + +NRGFAF+EY +H A +R+++ F+L A
Sbjct: 86 ILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAV 145
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA P + ++ +VK LYV+NL T+D +K A K V+ K ++
Sbjct: 146 QVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD- 201
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 202 --YAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLAKPVNKEST 243
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 315 (115.9 bits), Expect = 3.7e-28, P = 3.7e-28
Identities = 78/224 (34%), Positives = 122/224 (54%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +G+AFV + TKE A AI+ LN+ E++ G+ I + RLFIG +PR +++
Sbjct: 97 SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K + +I GV+ + + D + +NRGFAF+EY +H A +R+++ F+L A
Sbjct: 157 ILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAV 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA P + ++ +VK LYV+NL T+D +K A K V+ K ++
Sbjct: 217 QVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLAKPVNKEST 314
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 318 (117.0 bits), Expect = 7.1e-28, P = 7.1e-28
Identities = 77/246 (31%), Positives = 133/246 (54%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL 238
Y FVHFA R A+ A+ N E++G L+ +LAKP Q QK + G + ++A+
Sbjct: 283 -YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAV 341
Query: 239 --NPTY 242
P+Y
Sbjct: 342 VQQPSY 347
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 318 (117.0 bits), Expect = 7.1e-28, P = 7.1e-28
Identities = 77/246 (31%), Positives = 133/246 (54%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL 238
Y FVHFA R A+ A+ N E++G L+ +LAKP Q QK + G + ++A+
Sbjct: 283 -YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAV 341
Query: 239 --NPTY 242
P+Y
Sbjct: 342 VQQPSY 347
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 313 (115.2 bits), Expect = 7.2e-28, P = 7.2e-28
Identities = 66/216 (30%), Positives = 126/216 (58%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNG 236
Query: 207 YEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 237 KEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 271
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 317 (116.6 bits), Expect = 9.2e-28, P = 9.2e-28
Identities = 76/245 (31%), Positives = 132/245 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 110 GKNRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 169
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 170 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 229
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 230 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 284
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSA 237
Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S GG ++ +A
Sbjct: 285 -YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAA 343
Query: 238 LNPTY 242
P Y
Sbjct: 344 PQPGY 348
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 317 (116.6 bits), Expect = 9.2e-28, P = 9.2e-28
Identities = 76/245 (31%), Positives = 132/245 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 110 GKNRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 169
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 170 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 229
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++
Sbjct: 230 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD-- 284
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSA 237
Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S GG ++ +A
Sbjct: 285 -YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAA 343
Query: 238 LNPTY 242
P Y
Sbjct: 344 PQPGY 348
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 317 (116.6 bits), Expect = 9.5e-28, P = 9.5e-28
Identities = 69/217 (31%), Positives = 120/217 (55%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T+D +K++F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF R A+ A+ N E++G L+ +LAKP
Sbjct: 283 -YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 313 (115.2 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 71/220 (32%), Positives = 127/220 (57%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + T+E A +AI+ L++ E++ GK I + RLFIG++P++ +++
Sbjct: 81 SGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEE 140
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 141 IQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTI 200
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQ 181
V WA+P + + +V+ LYV+NL T++ L+ F+ G + +V +
Sbjct: 201 QVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------K 252
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + Y F+HF R A+ AL++ IDG ++ +LAKP
Sbjct: 253 KLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 292
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 310 (114.2 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 310 (114.2 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 310 (114.2 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 265 (98.3 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 56/165 (33%), Positives = 93/165 (56%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K +GE+KG+ FV F + + I++LN +KGK I+ ++ K +LFIGN+P++
Sbjct: 126 MKDKLTGESKGFGFVLFNDRSMCRNVIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDL 185
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
++ + G+ SI+ + P N+NRGFAFIEY +H A+ +R+ ++ KL
Sbjct: 186 SKEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLG 245
Query: 121 D--NAPTVSWADPRNAESSAAS------QVKALYVKNLPKDITQD 157
D TV+W+DP + ++KA+Y++NLP + D
Sbjct: 246 DYITTLTVNWSDPDPTTLDPQNDPLENKEIKAIYIRNLPLNHRND 290
Score = 89 (36.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 33/158 (20%), Positives = 74/158 (46%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPG-VISIELVKDPQNANQNRGFAFIE 98
I S A + +F G V + E+++ + + V+ I L+KD + +++GF F+
Sbjct: 83 ISKSQRNANNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKD-KLTGESKGFGFV- 140
Query: 99 YYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+N R N KL+ + + + +E+ + L++ NLPKD+++++
Sbjct: 141 LFN------DRSMCRNVIDKLNGKSIKGKIIEVKQSENK-----RKLFIGNLPKDLSKEQ 189
Query: 159 LKELFAHHGK-ITKV--VIPPAKPGQERSRYGFVHFAE 193
+F + I + ++ P +P + R + F+ + +
Sbjct: 190 FISIFNEKTEGIESIDFLMSPDQPNKNRG-FAFIEYQD 226
Score = 71 (30.1 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 186 YGFVHFAERSSAMKALK-NTEK-YEIDGQVLDCSLAKP-----QADQ---KTSGGSNSQK 235
Y FVH R A + L+ + EK I+G+VL S AKP ++D+ K SN+QK
Sbjct: 361 YAFVHLKTRELAEEILRIHEEKPININGKVLSLSFAKPIDKKLRSDKIQRKLQRISNNQK 420
Query: 236 SALN 239
+ LN
Sbjct: 421 NNLN 424
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 313 (115.2 bits), Expect = 2.6e-27, P = 2.6e-27
Identities = 70/219 (31%), Positives = 121/219 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F + + P A ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKK 264
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 265 IRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 312 (114.9 bits), Expect = 3.2e-27, P = 3.2e-27
Identities = 74/246 (30%), Positives = 131/246 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T++ +K+ F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKS 236
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 283 -YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAV 341
Query: 237 ALNPTY 242
A P+Y
Sbjct: 342 AQQPSY 347
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 310 (114.2 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 310 (114.2 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 310 (114.2 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 310 (114.2 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 76/224 (33%), Positives = 119/224 (53%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K F+ K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFS---KFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 310 (114.2 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 311 (114.5 bits), Expect = 4.1e-27, P = 4.1e-27
Identities = 74/246 (30%), Positives = 130/246 (52%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + T++ +K F G+ + K ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSF---GQFNPGCVERVKKIRD-- 282
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKS 236
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 283 -YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAV 341
Query: 237 ALNPTY 242
A P+Y
Sbjct: 342 AQQPSY 347
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 311 (114.5 bits), Expect = 4.4e-27, P = 4.4e-27
Identities = 74/238 (31%), Positives = 130/238 (54%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + ++ RLFIG +P+ +++
Sbjct: 119 GKNRGYAFVMYTQKHEAKRAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEI 178
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V+K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 179 LEEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 238
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL + +++ L++ F G+ + K ++
Sbjct: 239 VDWAEPEIDVDEDVMETVKILYVRNLMIETSEEILRQTF---GQFNPGCVERVKKIRD-- 293
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQKTSGGSNSQKSALNPT 241
Y FVHFA R A+ A+ N EI+G ++ +LAKP +Q T S+ +A T
Sbjct: 294 -YAFVHFASRDDAVVAMDNLNGTEIEGSRIEVTLAKPVDKEQYTRYQKASKGTAAATT 350
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 310 (114.2 bits), Expect = 5.4e-27, P = 5.4e-27
Identities = 73/244 (29%), Positives = 131/244 (53%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F I + K ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF---NSIKPGAVERVKKIRD- 267
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQ--KTSGGSNSQKSALNP 240
Y FVHF+ R A++A+K +DG ++ +LAKP D + + G+ + + L
Sbjct: 268 --YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQE 325
Query: 241 -TYP 243
TYP
Sbjct: 326 YTYP 329
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 310 (114.2 bits), Expect = 5.4e-27, P = 5.4e-27
Identities = 73/244 (29%), Positives = 131/244 (53%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F I + K ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF---NSIKPGAVERVKKIRD- 267
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQ--KTSGGSNSQKSALNP 240
Y FVHF+ R A++A+K +DG ++ +LAKP D + + G+ + + L
Sbjct: 268 --YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQE 325
Query: 241 -TYP 243
TYP
Sbjct: 326 YTYP 329
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 308 (113.5 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K + K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK---AEFNKFKPGSVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 308 (113.5 bits), Expect = 6.2e-27, P = 6.2e-27
Identities = 69/218 (31%), Positives = 120/218 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEARNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL T++ +++ F I + + K ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEF---NNIKQGAVERVKKIRD- 267
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R A+ A+K +DG ++ +LAKP
Sbjct: 268 --YAFVHFNKREDAVHAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 308 (113.5 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 69/219 (31%), Positives = 121/219 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F + + P A ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKK 264
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 265 IRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 308 (113.5 bits), Expect = 9.0e-27, P = 9.0e-27
Identities = 74/246 (30%), Positives = 130/246 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F I + K ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF---NSIKPGAVERVKKIRD- 267
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQ-----KTSGGSNSQKSA 237
Y FVHF+ R A++A+K +DG ++ +LAKP D + +GG N+
Sbjct: 268 --YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQG 325
Query: 238 LNPTYP 243
TYP
Sbjct: 326 -EYTYP 330
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 306 (112.8 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 69/219 (31%), Positives = 121/219 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 85 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 144
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 145 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 204
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F + + P A ++
Sbjct: 205 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKK 257
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 258 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 296
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 306 (112.8 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 69/219 (31%), Positives = 121/219 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F + + P A ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKK 264
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 265 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 305 (112.4 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 73/243 (30%), Positives = 131/243 (53%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNRQEAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTEGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F + + P A ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKK 264
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQ--KTSGGSNSQKSALN 239
R Y FVHF+ R A++A+K +DG ++ +LAKP D + + G+ + S L
Sbjct: 265 IRDYAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGSMLQ 324
Query: 240 PTY 242
Y
Sbjct: 325 GEY 327
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 304 (112.1 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 69/219 (31%), Positives = 121/219 (55%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ +++ F + + P A ++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKK 264
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 265 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 302 (111.4 bits), Expect = 3.9e-26, P = 3.9e-26
Identities = 68/218 (31%), Positives = 119/218 (54%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TK+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSTKQEAKNAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + + VK LYV+NL T++ +++ F I + K ++
Sbjct: 212 AVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEF---NSIKPGAVERVKKIRD- 267
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF++R A+ A+ IDG ++ +LAKP
Sbjct: 268 --YAFVHFSQREDAINAMNALNGKVIDGSPIEVTLAKP 303
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 266 (98.7 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 66/222 (29%), Positives = 119/222 (53%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMR 66
G+ +GYAF+TF KE A ++ +SCE++ K+ + F+G P+N +++
Sbjct: 31 GQNRGYAFITFCGKEAAQGLVKPCDSCEIRPGKVLGVCFSVANNTFVGFTPKNKTKENFE 90
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
+ +K+ G++ I L P + +N GF F+EY +H A +R + + K + N TV
Sbjct: 91 E-FSKVTEGLVGIILDHQPDDKKKNWGFCFLEYEDHKSAAQARLWLMSGKV-VWGNVVTV 148
Query: 127 SWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
ADP + ++VK L+V+NL +T++ L++ F+ G++ +V ++ +
Sbjct: 149 ERADPVEEPDPEGMAKVKVLFVRNLATTVTEEILEKSFSQFGELERV--------KKLTD 200
Query: 186 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK-PQADQK 226
Y FVHF +R A+KA+ EI+G+ ++ LA P +K
Sbjct: 201 YAFVHFEDRE-AVKAVDEMNGKEIEGEEIEIVLAMLPDRKRK 241
Score = 39 (18.8 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 222 QADQKTSGGSNSQKSALNPTYPP 244
Q D K +N Q LNP P
Sbjct: 388 QPDSKRRQTNNQQNWVLNPRQQP 410
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 275 (101.9 bits), Expect = 7.0e-23, P = 7.0e-23
Identities = 71/243 (29%), Positives = 125/243 (51%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K + ++KG AF+ F T E A +A++EL S + GKK +A+Q LF+GN+ + W
Sbjct: 246 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIW 305
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ +R+ + G + I LV+D N N NRG+AF+E+ + + A + +++
Sbjct: 306 TPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMF 365
Query: 120 DDNAPT-VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
P VS+ D + E +QVK +++ L ++R+++L +GK+ KV +
Sbjct: 366 GVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARN 425
Query: 178 KPGQERSRYGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKPQADQKTSGGSNS 233
P R +GFV F +A+ K + N+E E + + + L++P QK G S
Sbjct: 426 MPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPL--QKAGKGRQS 483
Query: 234 QKS 236
+S
Sbjct: 484 SRS 486
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 38/162 (23%), Positives = 79/162 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G++ + E+D++K +G V + ++K+PQ +++G AF+ + A E +++
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGE-VTEVRILKNPQT-KKSKGSAFLRF---ATVEQAKR 270
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--K 168
+ K +P ++ + +A+ L+V N+ K T + L+E H+G
Sbjct: 271 AVKELK------SPMING---KKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVEN 321
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
+ + + +R Y F+ F+ RS AM A K K ++
Sbjct: 322 MDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV 363
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 217 (81.4 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 65/228 (28%), Positives = 118/228 (51%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMR 66
GY +V F + A++AI+ELN L GK I+ + + R GN+ +N E
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDH 137
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++ D ++ Q++G+ F++Y N A+ + +K++ L+D
Sbjct: 138 KALHDTFSSFG-NIVSCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDK 192
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V R S A++ K +YVKNL + T D LK F +GKIT V+ K G
Sbjct: 193 QVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDG 250
Query: 181 QERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ +S+ +GFV+F A +A+++ ++ D + A+ +++++T
Sbjct: 251 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 137 (53.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 50/211 (23%), Positives = 100/211 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +DD++ A + G + S ++KD + +++GF F+ + N A + +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGEG--KSKGFGFVNFENADDAARAVE 273
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESS------------AASQVKA--LYVKNLPKDITQ 156
++ KF DD V A ++ + AA + ++ LYVKNL I+
Sbjct: 274 SLNGHKF--DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISD 331
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++LKE+F+ G +T + G + GFV FA A +A+ I+ + L
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Query: 217 SLAKPQADQKT---SGGSNSQKSALNPTYPP 244
++A+ + D++ + S + A+ P+ P
Sbjct: 391 AIAQRKEDRRVRLQAQFSQVRPVAMQPSVGP 421
Score = 126 (49.4 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 41/157 (26%), Positives = 79/157 (50%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFI 53
SG++KGY FV + +E A +AIE+LN L K++ +A + K +++
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYV 219
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +DD++ A + G + S ++KD + +++GF F+ + N A + + ++
Sbjct: 220 KNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGEG--KSKGFGFVNFENADDAARAVESLN 276
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
KF DD V A + S ++++ Y +NL
Sbjct: 277 GHKF--DDKEWYVGRAQKK---SERETELRVRYEQNL 308
Score = 101 (40.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 46/194 (23%), Positives = 78/194 (40%)
Query: 135 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 194
E++ Q LYVKNL I+ ++LKE+F+ G +T + G + GFV FA
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATP 368
Query: 195 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPT-------YPP 244
A +A+ I+ + L ++A+ + D++ + S + A+ P+ YPP
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPP 428
Query: 245 HXXXXXXXXXXXXXXXXXX----XXXFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVL 298
+ Q +V G G P +PM+ P +
Sbjct: 429 GGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGG 488
Query: 299 QQPGVQQHNPPPQP 312
++PG QH+ P
Sbjct: 489 RRPGGIQHSQQQNP 502
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 206 (77.6 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 61/234 (26%), Positives = 114/234 (48%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + +EE E+ G+ I + + +++ F G W
Sbjct: 78 KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 136
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 137 GESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 193
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L ++ T++ LKE F G I
Sbjct: 194 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESF--DGSIR 251
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 252 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 304
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 39/151 (25%), Positives = 67/151 (44%)
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 151
R F ++++ + AE + + K+ N + P+ +S + L KNLP
Sbjct: 1 RKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLP 55
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
+TQD LKE+F +I V +K G+ + ++ F + A K L+ + EIDG
Sbjct: 56 YKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEIDG 110
Query: 212 QVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
+ + + +Q GG NS S + T
Sbjct: 111 RSISLYYTGEKGQNQDFRGGKNSTWSGESKT 141
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 165 (63.1 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 43/145 (29%), Positives = 77/145 (53%)
Query: 82 VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAA 139
+K PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 137 IKVPQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 193
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
K L+VK L +D T++ LKE F G + ++ + G + +GFV F A
Sbjct: 194 QPSKTLFVKGLSEDTTEETLKESF--DGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKA 250
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQAD 224
A + E EIDG + AKP+ +
Sbjct: 251 AKEAMEDGEIDGNKVTLDWAKPKGE 275
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 32/137 (23%), Positives = 72/137 (52%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 144 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 203
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 204 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 258
Query: 116 KFKLDDNAPTVSWADPR 132
+ +D N T+ WA P+
Sbjct: 259 E--IDGNKVTLDWAKPK 273
Score = 103 (41.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
K L + NL T++ L+E+F K T + +P + G+ + Y F+ FA A +AL
Sbjct: 111 KTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKG-YAFIEFASFEDAKEALN 166
Query: 203 NTEKYEIDGQVLDCSLAKPQ 222
+ K EI+G+ + L P+
Sbjct: 167 SCNKREIEGRAIRLELQGPR 186
Score = 80 (33.2 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W
Sbjct: 25 KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWS 83
Query: 62 EDDMRK 67
DD RK
Sbjct: 84 -DDSRK 88
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 189 (71.6 bits), Expect = 7.9e-15, P = 7.9e-15
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKL 199
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 206 (77.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 61/234 (26%), Positives = 114/234 (48%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + +EE E+ G+ I + + +++ F G W
Sbjct: 437 KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 495
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 496 GESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 552
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L ++ T++ LKE F G I
Sbjct: 553 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESF--DGSIR 610
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 611 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 663
Score = 143 (55.4 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 52/225 (23%), Positives = 96/225 (42%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ + +++ ++ +
Sbjct: 293 RKKEMAKQKAAP----EAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDV---FA 345
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 346 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 400
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 401 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 455
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
K L+ + EIDG+ + + +Q GG NS S + T
Sbjct: 456 EKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKT 500
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 204 (76.9 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 60/234 (25%), Positives = 113/234 (48%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W
Sbjct: 424 KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWS 482
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 539
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G +
Sbjct: 540 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVR 597
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 598 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 650
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 280 RKKEMAKQKAAP----EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV---FA 332
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L R F ++++ + AE + + K+ N + P+ +S
Sbjct: 333 KNDLAVVDVRIGMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 387
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 388 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADA 442
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
K + + EIDG+ + + +Q GG NS S + T
Sbjct: 443 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 487
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 204 (76.9 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 60/234 (25%), Positives = 113/234 (48%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W
Sbjct: 425 KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWS 483
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 484 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 540
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G +
Sbjct: 541 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVR 598
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 599 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 651
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 281 RKKEMAKQKAAP----EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV---FA 333
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L R F ++++ + AE + + K+ N + P+ +S
Sbjct: 334 KNDLAVVDVRIGMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 388
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 389 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADA 443
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
K + + EIDG+ + + +Q GG NS S + T
Sbjct: 444 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 488
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 204 (76.9 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 60/234 (25%), Positives = 113/234 (48%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W
Sbjct: 426 KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWS 484
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 485 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 541
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G +
Sbjct: 542 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVR 599
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 600 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 652
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 282 RKKEMAKQKAAP----EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV---FA 334
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L R F ++++ + AE + + K+ N + P+ +S
Sbjct: 335 KNDLAVVDVRIGMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 389
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 390 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADA 444
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
K + + EIDG+ + + +Q GG NS S + T
Sbjct: 445 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 489
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 202 (76.2 bits), Expect = 8.1e-14, P = 8.1e-14
Identities = 60/234 (25%), Positives = 112/234 (47%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + EE E+ G+ I + + + + + G W
Sbjct: 429 KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWS 487
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 488 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 544
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G +
Sbjct: 545 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVR 602
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 603 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 655
Score = 136 (52.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 51/225 (22%), Positives = 94/225 (41%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ + +++ ++ +
Sbjct: 285 RKKEMAKQKAAP----EAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDL---FA 337
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 338 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 392
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 393 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 447
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQAD-QKTSGGSNSQKSALNPT 241
K + + EIDG+ + + Q GG NS S + T
Sbjct: 448 EKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKT 492
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 201 (75.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 61/234 (26%), Positives = 112/234 (47%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + +EE E+ G+ I + + + + G W
Sbjct: 434 KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWS 492
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 493 GESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 549
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G I
Sbjct: 550 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSIR 607
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 608 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 660
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/225 (23%), Positives = 95/225 (42%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 290 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 342
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 343 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 397
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 398 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 452
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQAD-QKTSGGSNSQKSALNPT 241
K L+ + EIDG+ + + Q GG NS S + T
Sbjct: 453 EKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKT 497
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 176 (67.0 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 35/107 (32%), Positives = 64/107 (59%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 190 (71.9 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 62/224 (27%), Positives = 108/224 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-R 66
GYA++ F+ A +A++ +N LKG+ I+ +Q L +GN+ ED +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
KA+ +I K + + +RGF F+ + H A+ + M+ L+D V
Sbjct: 113 KALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFV 170
Query: 127 SWADPRN---AESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
R AE A A + +YVKNLP D+ + L++LF+ GK+ V + G
Sbjct: 171 GHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS 230
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 231 RC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 191 (72.3 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 57/226 (25%), Positives = 112/226 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDD 121
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M+ K
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 167
Query: 122 NAPTVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
R AE S AS+ +Y+KN D+ +RLK++F+ +GK V + G
Sbjct: 168 FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 227
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 228 KSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 37/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHRL--FIG 54
D G +KGYAFV F+ + A +AIEE+N LKG K+ K A+ + + F
Sbjct: 133 DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 191
Query: 55 NVPRNWG---EDDMRKAV-TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G +D+ K V +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMS 113
+M+
Sbjct: 249 EMN 251
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 45/201 (22%), Positives = 95/201 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWG---EDDMRKAV-TKIGPGVISIELVKDPQNANQN 91
K +K + + ++K F +N+G +D+ K V +K G +S++++ D ++ ++
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKS 229
Query: 92 RGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ + +H A+ + ++M+ N + K++ A + E
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRG 289
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L+ F+ G I++V + + GQ + +G + F+ A K
Sbjct: 290 CQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKG-FGLICFSSPEDATK 347
Query: 200 ALKNTEKYEIDGQVLDCSLAK 220
A+ + + L +LA+
Sbjct: 348 AMTEMNGRILGSKPLSIALAQ 368
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 191 (72.3 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 57/226 (25%), Positives = 112/226 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 169
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDD 121
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M+ K
Sbjct: 170 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 122 NAPTVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
R AE S AS+ +Y+KN D+ +RLK++F+ +GK V + G
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 286 KSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 140 (54.3 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 47/179 (26%), Positives = 91/179 (50%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
K K++ +A L++G++ + ED + + + +GP V+SI + +D Q ++ G+A
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGP-VLSIRICRD-QVTRRSLGYA 112
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 155
++ + A A+ + M+ K + + W+ R+A S + +++KNL K I
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIK--GKSIRLMWSQ-RDAYLRR-SGIGNVFIKNLDKSID 168
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L E F+ GKI + G + Y FVHF +S+A +A++ E++G++L
Sbjct: 169 NKTLYEHFSAFGKILSSKVMSDDQGSKG--YAFVHFQNQSAADRAIE-----EMNGKLL 220
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 37/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHRL--FIG 54
D G +KGYAFV F+ + A +AIEE+N LKG K+ K A+ + + F
Sbjct: 191 DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 249
Query: 55 NVPRNWG---EDDMRKAV-TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G +D+ K V +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 111 KMS 113
+M+
Sbjct: 307 EMN 309
Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
Identities = 45/201 (22%), Positives = 95/201 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWG---EDDMRKAV-TKIGPGVISIELVKDPQNANQN 91
K +K + + ++K F +N+G +D+ K V +K G +S++++ D ++ ++
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKS 287
Query: 92 RGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ + +H A+ + ++M+ N + K++ A + E
Sbjct: 288 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRG 347
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L+ F+ G I++V + + GQ + +G + F+ A K
Sbjct: 348 CQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKG-FGLICFSSPEDATK 405
Query: 200 ALKNTEKYEIDGQVLDCSLAK 220
A+ + + L +LA+
Sbjct: 406 AMTEMNGRILGSKPLSIALAQ 426
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 192 (72.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 63/228 (27%), Positives = 115/228 (50%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 TGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 49/207 (23%), Positives = 98/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+G+D D +++ +K G +S++++ DP ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGK-TLSVKVMTDP--TGKS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ + H A + ++M+ N K K++ A + E +
Sbjct: 231 KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D D +++ +K G +S++++ DP +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGK-TLSVKVMTDP--TGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 62/228 (27%), Positives = 112/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-R 66
GYA++ F+ A +A++ +N +KG+ I+ +Q L +GN+ ED +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDR 166
Query: 123 APTVS-WADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + R E + A + +YVKNL D+ + RL++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ N E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 190 (71.9 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 62/224 (27%), Positives = 108/224 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-R 66
GYA++ F+ A +A++ +N LKG+ I+ +Q L +GN+ ED +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
KA+ +I K + + +RGF F+ + H A+ + M+ L+D V
Sbjct: 113 KALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFV 170
Query: 127 SWADPRN---AESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
R AE A A + +YVKNLP D+ + L++LF+ GK+ V + G
Sbjct: 171 GHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS 230
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 231 RC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 190 (71.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 63/234 (26%), Positives = 110/234 (47%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELK--GKKIKCSAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + +EE E+ G+K HR G W
Sbjct: 346 KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEK----GQSQDHR---GGKNSTWS 397
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 398 GESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 454
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G I
Sbjct: 455 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSIR 512
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 513 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 565
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 55/224 (24%), Positives = 96/224 (42%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 202 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 254
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 255 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 309
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 310 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 364
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ EK G +D + K Q+ Q GG NS S + T
Sbjct: 365 EKTLE--EK---QGTEIDYTGEKGQS-QDHRGGKNSTWSGESKT 402
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 190 (71.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 63/234 (26%), Positives = 110/234 (47%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELK--GKKIKCSAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + +EE E+ G+K HR G W
Sbjct: 351 KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEK----GQSQDHR---GGKNSTWS 402
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 403 GESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 459
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G I
Sbjct: 460 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSIR 517
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 518 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 570
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 55/224 (24%), Positives = 96/224 (42%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 207 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 259
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 260 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 314
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 315 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 369
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ EK G +D + K Q+ Q GG NS S + T
Sbjct: 370 EKTLE--EK---QGTEIDYTGEKGQS-QDHRGGKNSTWSGESKT 407
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 190 (71.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 63/234 (26%), Positives = 110/234 (47%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELK--GKKIKCSAAQAKHRLFIGNVPRNWG 61
KD G++KG A++ F+T+ A + +EE E+ G+K HR G W
Sbjct: 351 KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEK----GQSQDHR---GGKNSTWS 402
Query: 62 EDDMRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQK 111
+ ++ + L +K PQN N +++G+AFIE+ A E +++
Sbjct: 403 GESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 459
Query: 112 MSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++ K +++ A + PR + ++ + K L+VK L +D T++ LKE F G I
Sbjct: 460 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSIR 517
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 518 ARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 570
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 55/224 (24%), Positives = 96/224 (42%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 207 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 259
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 260 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 314
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 315 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 369
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ EK G +D + K Q+ Q GG NS S + T
Sbjct: 370 EKTLE--EK---QGTEIDYTGEKGQS-QDHRGGKNSTWSGESKT 407
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 185 (70.2 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 62/234 (26%), Positives = 112/234 (47%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWG 61
SG + YA+V F+ + A A++ +N +KGK ++ +Q L +GN+ +N
Sbjct: 49 SGSSN-YAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLD 107
Query: 62 EDDMRKA----VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ KA V+ G ++S +V D N ++G+ F+ + H AE + +KM+
Sbjct: 108 KSINNKALYDTVSAFG-NILSCNVVCDE---NGSKGYGFVHFETHEAAERAIKKMNG--M 161
Query: 118 KLDDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+ V R AE A A + +Y+KN +D+ +RLK+LF G V
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ + G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 222 VMTDESGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T E A +AI+++N L G+K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D + + +A++ + + AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V ++VKNL K I L + + G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF +A +A+K ++G+ + K + +++
Sbjct: 126 LSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 189 (71.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 66/246 (26%), Positives = 113/246 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KG A++ F+T+ A +A+EE E+ G+ + K + L
Sbjct: 403 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 462
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACAEYSRQ 110
+ N+ E+ +++ K SI++ PQN NQ R G+AF+E+ A+ +
Sbjct: 463 VNNLSYAASEETLQELFKK----ATSIKM---PQN-NQGRPKGYAFVEFPTAEDAKEALN 514
Query: 111 KMSNPKF-----KLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFA 164
+N + +L+ ++P SW NA Q K L+V+ L +D T++ L+E F
Sbjct: 515 SCNNTEIEGRAIRLEFSSP--SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF- 571
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I+ ++ G + +GFV F+ A A + E EIDG + AKP+ +
Sbjct: 572 -EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 629
Query: 225 QKTSGG 230
+ GG
Sbjct: 630 FQRGGG 635
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 52/225 (23%), Positives = 106/225 (47%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+A+++ E K KK + A + LF+ N+ +++R A+ + G
Sbjct: 253 RKKEMANKSAPEA-----KKKKTEIKAPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKK 306
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--E 135
+++ V + + + R F ++++ + + + N K KL + A + + E
Sbjct: 307 NLQ-VSEVRIGSSKR-FGYVDFLS--AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKE 361
Query: 136 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 195
+ + L+VKNLP +T+D +K +F + ++ V+ K G + ++ F +
Sbjct: 362 NKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGM-AYIEFKTEA 417
Query: 196 SAMKALKNTEKYEIDGQ--VLDCSLAKPQADQKTSGGSNSQKSAL 238
A KAL+ + E+DG+ V+D + K Q + + GG K+ +
Sbjct: 418 EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 462
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 37/146 (25%), Positives = 70/146 (47%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M + G KGYAFV F T E A +A+ N+ E++G+ I+ + + GN+
Sbjct: 487 MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQK--GNMNARG 544
Query: 61 G--------------EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
G ED + + + G IS +V D ++ ++GF F+++ + A+
Sbjct: 545 GFNQQSKTLFVRGLSEDTTEETLRESFEGSISARIVTD-RDTGSSKGFGFVDFSSPEDAK 603
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPR 132
+++ M + + +D N T+ +A P+
Sbjct: 604 AAKEAMEDGE--IDGNKVTLDFAKPK 627
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 189 (71.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 66/246 (26%), Positives = 113/246 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KG A++ F+T+ A +A+EE E+ G+ + K + L
Sbjct: 405 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 464
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACAEYSRQ 110
+ N+ E+ +++ K SI++ PQN NQ R G+AF+E+ A+ +
Sbjct: 465 VNNLSYAASEETLQELFKK----ATSIKM---PQN-NQGRPKGYAFVEFPTAEDAKEALN 516
Query: 111 KMSNPKF-----KLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFA 164
+N + +L+ ++P SW NA Q K L+V+ L +D T++ L+E F
Sbjct: 517 SCNNTEIEGRAIRLEFSSP--SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF- 573
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I+ ++ G + +GFV F+ A A + E EIDG + AKP+ +
Sbjct: 574 -EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Query: 225 QKTSGG 230
+ GG
Sbjct: 632 FQRGGG 637
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 50/224 (22%), Positives = 103/224 (45%)
Query: 20 KELASQAIEEL-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 78
KE + +E+ N + KK K + LF+ N+ +++R A+ + G +
Sbjct: 251 KEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKKN 309
Query: 79 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ES 136
++ V + + + R F ++++ + + + N K KL + A + + E+
Sbjct: 310 LQ-VSEVRIGSSKR-FGYVDFLS--AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKEN 364
Query: 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196
+ L+VKNLP +T+D +K +F + ++ V+ K G + ++ F +
Sbjct: 365 KKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGM-AYIEFKTEAE 420
Query: 197 AMKALKNTEKYEIDGQ--VLDCSLAKPQADQKTSGGSNSQKSAL 238
A KAL+ + E+DG+ V+D + K Q + + GG K+ +
Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 464
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 37/146 (25%), Positives = 70/146 (47%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M + G KGYAFV F T E A +A+ N+ E++G+ I+ + + GN+
Sbjct: 489 MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQK--GNMNARG 546
Query: 61 G--------------EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
G ED + + + G IS +V D ++ ++GF F+++ + A+
Sbjct: 547 GFNQQSKTLFVRGLSEDTTEETLRESFEGSISARIVTD-RDTGSSKGFGFVDFSSPEDAK 605
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPR 132
+++ M + + +D N T+ +A P+
Sbjct: 606 AAKEAMEDGE--IDGNKVTLDFAKPK 629
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 189 (71.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 66/246 (26%), Positives = 113/246 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KG A++ F+T+ A +A+EE E+ G+ + K + L
Sbjct: 405 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 464
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACAEYSRQ 110
+ N+ E+ +++ K SI++ PQN NQ R G+AF+E+ A+ +
Sbjct: 465 VNNLSYAASEETLQELFKK----ATSIKM---PQN-NQGRPKGYAFVEFPTAEDAKEALN 516
Query: 111 KMSNPKF-----KLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFA 164
+N + +L+ ++P SW NA Q K L+V+ L +D T++ L+E F
Sbjct: 517 SCNNTEIEGRAIRLEFSSP--SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF- 573
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I+ ++ G + +GFV F+ A A + E EIDG + AKP+ +
Sbjct: 574 -EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Query: 225 QKTSGG 230
+ GG
Sbjct: 632 FQRGGG 637
Score = 135 (52.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 50/224 (22%), Positives = 103/224 (45%)
Query: 20 KELASQAIEEL-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 78
KE + +E+ N + KK K + LF+ N+ +++R A+ + G +
Sbjct: 251 KEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKKN 309
Query: 79 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ES 136
++ V + + + R F ++++ + + + N K KL + A + + E+
Sbjct: 310 LQ-VSEVRIGSSKR-FGYVDFLS--AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKEN 364
Query: 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196
+ L+VKNLP +T+D +K +F + ++ V+ K G + ++ F +
Sbjct: 365 KKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGM-AYIEFKTEAE 420
Query: 197 AMKALKNTEKYEIDGQ--VLDCSLAKPQADQKTSGGSNSQKSAL 238
A KAL+ + E+DG+ V+D + K Q + + GG K+ +
Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 464
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 37/146 (25%), Positives = 70/146 (47%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M + G KGYAFV F T E A +A+ N+ E++G+ I+ + + GN+
Sbjct: 489 MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQK--GNMNARG 546
Query: 61 G--------------EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
G ED + + + G IS +V D ++ ++GF F+++ + A+
Sbjct: 547 GFNQQSKTLFVRGLSEDTTEETLRESFEGSISARIVTD-RDTGSSKGFGFVDFSSPEDAK 605
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPR 132
+++ M + + +D N T+ +A P+
Sbjct: 606 AAKEAMEDGE--IDGNKVTLDFAKPK 629
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 188 (71.2 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 62/228 (27%), Positives = 113/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 133 (51.9 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00073, P = 0.00073
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 187 (70.9 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 62/228 (27%), Positives = 113/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 133 (51.9 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00073, P = 0.00073
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 187 (70.9 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 61/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 36/123 (29%), Positives = 66/123 (53%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 187 (70.9 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 61/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 36/123 (29%), Positives = 66/123 (53%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 187 (70.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/228 (27%), Positives = 113/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 133 (51.9 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 131 (51.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00075, P = 0.00075
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 186 (70.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 62/224 (27%), Positives = 105/224 (46%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK---HRLFIGNV-PRNWGEDDMR 66
GYA++ F+ A +A++ +N +KG+ I+ + R +GN+ +N
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDN 112
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
KA+ SI K N + +RGF F+ + H A+ + M+ L+D V
Sbjct: 113 KALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFV 170
Query: 127 SW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
R AE A A +YVKNL D+ + L++LF+ GK V + GQ
Sbjct: 171 GHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQS 230
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
R +GF++F + A KA+ + E+ GQ+L A+ +A+++
Sbjct: 231 RG-FGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQ 273
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 46/188 (24%), Positives = 84/188 (44%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E ++ ++ G S+++++D Q+RGF FI + H A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGK-TQSVKVMRDSNG--QSRGFGFINFEKHEEAQKAVD 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L A+ +N Q+K LYVKNL I DR
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+F+ +G IT + +GFV F+ A KA+ + + L +L
Sbjct: 310 LKEVFSTYGVITSAKV--MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 47/157 (29%), Positives = 83/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 186 (70.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 63/228 (27%), Positives = 112/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 54 GYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 113
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 114 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 167
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ RLKELF +GK V +
Sbjct: 168 KVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP 227
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV + + A KA++ E++G+ + A+ + +++
Sbjct: 228 TGKSRG-FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQ 274
Score = 131 (51.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 53/207 (25%), Positives = 97/207 (46%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGED--DMR--KAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+G+D D R + K G +S++++ DP ++
Sbjct: 175 KSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGK-TLSVKVMTDP--TGKS 231
Query: 92 RGFAFIEYYNHACAEYSRQKMS----NPK--F------KLDDNAPTVSWADPRNAESSAA 139
RGF F+ Y H A + ++M+ N K F K++ A + E +
Sbjct: 232 RGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISR 291
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 292 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEEGRSKG-FGFVCFSSPEEATK 349
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 350 AVTEMNGRIVGSKPLYVALAQRKEERK 376
Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 39/123 (31%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ K A+ AK + F
Sbjct: 134 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTN 193
Query: 55 NVPRNWGED--DMR--KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D D R + K G +S++++ DP ++RGF F+ Y H A + +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGK-TLSVKVMTDP--TGKSRGFGFVSYEKHEDANKAVE 250
Query: 111 KMS 113
+M+
Sbjct: 251 EMN 253
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 186 (70.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 59/211 (27%), Positives = 109/211 (51%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGE 62
GY +V + + A +A+++LN L GK I+ S+ + R LF+ N+ ++
Sbjct: 88 GYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDN 147
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ +A + G ++S ++ D + Q+RG+ F+++ A+ + +K+ N K L+D
Sbjct: 148 KTLHEAFSGCGT-IVSCKVATD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDK 202
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + SAA ++K +YVKNL + T D LK F +G I+ V+ + G
Sbjct: 203 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDG 260
Query: 181 QERSR-YGFVHFAERSSAMKALK--NTEKYE 208
+SR +GFV+F A +A++ N +K++
Sbjct: 261 DGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Score = 142 (55.0 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + T++ V+S+ + +D N + G+ ++ Y N AE + Q
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQ-VVSVRVCRDAAT-NTSLGYGYVNYSNTDDAEKAMQ 105
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
K+ N + L+ ++++ R++ S+ S V L+VKNL K + L E F+ G I
Sbjct: 106 KL-NYSY-LNGKMIRITYSS-RDS-SARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
+ GQ R YGFV F SA A+ EK ++G+VL+
Sbjct: 162 SCKVATDHMGQSRG-YGFVQFDTEDSAKNAI---EK--LNGKVLN 200
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 67/297 (22%), Positives = 121/297 (40%)
Query: 35 LKGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 93
L+ ++ + +A + K +++ N+ +D+++ + G + S +++D ++R
Sbjct: 210 LRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG-SISSAVVMRDGDG--KSRC 266
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN------------AESSAASQ 141
F F+ + N A + + ++ KF DD V A ++ S ++
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNK 324
Query: 142 VKAL--YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
L YVKNL +T ++L+ELFA G IT + G + GFV F+ S A +
Sbjct: 325 FDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASR 383
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHXXXXXXXXXXXXXX 259
L + G+ L +LA+ + +++ +Q S + P + P
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQRKEERRAK--LQAQFSQMRPAFIP-------GVGPRMPI 434
Query: 260 XXXXXXXFAQPMVYGRGAAP-----GGMAMLPMLLPDGR---IGYVLQQPGVQQHNP 308
Q + YG+G P G P L+P R G + QPG Q P
Sbjct: 435 FTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRP 491
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 185 (70.2 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 61/228 (26%), Positives = 113/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/123 (30%), Positives = 68/123 (55%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 130 (50.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 48/207 (23%), Positives = 98/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 185 (70.2 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 62/234 (26%), Positives = 112/234 (47%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWG 61
SG + YA+V F+ + A A++ +N +KGK ++ +Q L +GN+ +N
Sbjct: 49 SGSSN-YAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLD 107
Query: 62 EDDMRKA----VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ KA V+ G ++S +V D N ++G+ F+ + H AE + +KM+
Sbjct: 108 KSINNKALYDTVSAFG-NILSCNVVCDE---NGSKGYGFVHFETHEAAERAIKKMNG--M 161
Query: 118 KLDDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+ V R AE A A + +Y+KN +D+ +RLK+LF G V
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ + G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 222 VMTDESGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 47/209 (22%), Positives = 96/209 (45%)
Query: 34 ELKGKKIKCSAAQAKHRLFIGNVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNAN 89
+ K +K + + A+ + F +N+GED D ++ K GP +S++++ D +
Sbjct: 172 QFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESG 228
Query: 90 QNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESS 137
+++GF F+ + H A+ + +M+ + K++ + +
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
QV LYVKNL I +RL++ F+ G IT + + G+ + +GFV F+ A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-MEGGRSKG-FGFVCFSSPEEA 346
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQK 226
KA+ + + L +LA+ + +++
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T E A +AI+++N L G+K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D + + +A++ + + AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V ++VKNL K I L + + G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF +A +A+K ++G+ + K + +++
Sbjct: 126 LSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 185 (70.2 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 62/230 (26%), Positives = 113/230 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA V F+ E A +A++ +N +KGK ++ +Q L F+ N+ R+
Sbjct: 53 GYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDS 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM N F L+D
Sbjct: 113 KTLYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEEAERAIEKM-NGMF-LNDR 166
Query: 123 APTV----SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
V S D R AE A A + +Y+KNL +D+ +RL++LF+ G V +
Sbjct: 167 KVFVGRFKSRRD-RQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD 225
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F A KA+ +++G+ + A+ + +++T
Sbjct: 226 ESGKSKG-FGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 185 (70.2 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 61/228 (26%), Positives = 113/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/123 (30%), Positives = 68/123 (55%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 48/207 (23%), Positives = 98/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00075, P = 0.00075
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 184 (69.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 67
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 68 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 121
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 182 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 88 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 147
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 204
Query: 111 KMS 113
+M+
Sbjct: 205 EMN 207
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 184 (69.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 184 (69.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 64/228 (28%), Positives = 112/228 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-R 66
GYA++ F+ A +A++ +N +KG+ I+ +Q L +GNV ED +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D + RGF F+ + H A+ + + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDDHGS---RGFGFVHFETHEAAQNAIRTMNG--MLLNDR 166
Query: 123 APTVSWADPRN---AESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNL D+ + L++LF+ GKI V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQ 273
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 57/229 (24%), Positives = 114/229 (49%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KG+ ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ D+LK++F+ +G + + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ R +GFV F A +A+ E++G+++ A+ + +++T
Sbjct: 227 NGKSRG-FGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 39/123 (31%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED---DMRKAV-TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D K + +K G +SI ++ D +N ++RGF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYG-NAMSIRVMTD-ENG-KSRGFGFVSFERHEDAQRAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 116 (45.9 bits), Expect = 0.00074, P = 0.00074
Identities = 40/186 (21%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ ++ E + + + G ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAG-AILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGRPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 183 (69.5 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 60/229 (26%), Positives = 110/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIDKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKE F +G V +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ R +GFV F A KA+ + +++G+ + A+ + +++T
Sbjct: 227 HGKSRG-FGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 178 (67.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 43 SAAQAKH--RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100
S + +H +LFIG + +++++ K G ++ + ++KDP+ ++RGF FI Y
Sbjct: 23 SITEPEHMRKLFIGGLDYRTTDENLKAHFEKWG-NIVDVVVMKDPRT-KRSRGFGFITY- 79
Query: 101 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAES-SAASQVKALYVKNLPKDITQDR 158
+H+ QK S P K+D A PR + +S +A + VK L+V L D +
Sbjct: 80 SHSSMIDEAQK-SRPH-KIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQS 137
Query: 159 LKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
+++ F H G I + ++ + G++R + FV F + K + ++++++G+++D
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRG-FAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVK 195
Query: 218 LAKP-QADQKTSGG 230
A P Q DQ+ GG
Sbjct: 196 KALPKQNDQQGGGG 209
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 182 (69.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 57/229 (24%), Positives = 112/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KG+ ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + H AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETHEAAERAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ ++LKE+F +G + +
Sbjct: 167 KVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A +A+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT 274
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMMT-RRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGRPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 37/123 (30%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D +++ K GP +SI ++ D ++ +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPA-LSIRVMTD--DSGKSKGFGFVSFERHEDAQRAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 180 (68.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 49/180 (27%), Positives = 94/180 (52%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LF+G +P+++ E++++ T I + S+ L+K+ + N+ +G AF+ + A+ +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADRAI 61
Query: 110 QKMSNPK-FKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+++ N K F+ N V +AD + + AS+ L+V LP+ +++++ELF HG
Sbjct: 62 EQLHNSKKFQGVLNNLQVKYAD--SEQEKLASK---LFVGMLPRSYEEEQIRELFEPHGV 116
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV--LDCSLAKPQADQK 226
+ + I P E GF+ F R SA+ A+ ++DG L A + D+K
Sbjct: 117 VEDICILRG-PNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKK 175
Score = 121 (47.7 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 41/149 (27%), Positives = 76/149 (51%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGK----KIK-CSAAQAK--HRLF 52
+K K + E +G AFV+ ++E A +AIE+L NS + +G ++K + Q K +LF
Sbjct: 35 IKNKTTNEPQGCAFVSVPSREEADRAIEQLHNSKKFQGVLNNLQVKYADSEQEKLASKLF 94
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+G +PR++ E+ +R+ G V I +++ P + +++G FI++ N A + +
Sbjct: 95 VGMLPRSYEEEQIRELFEPHGV-VEDICILRGPNS--ESKGCGFIKFDNRESALSAIATL 151
Query: 113 SNPKFKLDDNAPTVSWADPRNAESSAASQ 141
+ K N V +AD + Q
Sbjct: 152 NGMKLDGSPNPLVVKFADTEKDKKKKQKQ 180
Score = 71 (30.1 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196
S Q L+V N+P + + L LF +G + + K +GFV + +S
Sbjct: 397 SVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPAS 456
Query: 197 AMKALKNTEKYEIDGQVLDCSL 218
A A+ N + G+ L SL
Sbjct: 457 ANLAISNLHGQMMAGKKLKVSL 478
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 181 (68.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 60/229 (26%), Positives = 112/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-R 66
GYA++ F+ A +A++ +N +KG+ I+ +Q L +GN+ ED +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDDHGS---RGFGFVHFETHEAAQQAITTMNG--MLLNDR 166
Query: 123 APTVS-WADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + R E + A + +YVKNL D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G R +GFV+F + A KA+ + E+ G++L A+ + ++++
Sbjct: 227 SGHSRG-FGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 158 (60.7 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 45/185 (24%), Positives = 85/185 (45%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G + + + D++ TK G V + DP N ++RGF FI + E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGE-VTDCTIKMDP-NTGRSRGFGFILFKEPGSVE--- 55
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + +LD DP+ A + VK ++V L + T+++++E F G+I
Sbjct: 56 KVLEQKEHRLDGRL-----IDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 110
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QADQ 225
+ +P +R + F+ F E K L+ + + + G + +A+P Q Q
Sbjct: 111 EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKCEIKVAQPKEVYQQQQ 169
Query: 226 KTSGG 230
+SGG
Sbjct: 170 FSSGG 174
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 181 (68.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 55/230 (23%), Positives = 105/230 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDM 65
G +KG A++ F+++ A + +EE E+ G+ + K R W +
Sbjct: 430 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 489
Query: 66 RKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN- 114
++ + L +K PQN + +++G+AFIE+ A E +++ +++
Sbjct: 490 TLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEALNSC 546
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
K +++ + PR + ++ + K L+VK L +D T++ LKE F G + ++
Sbjct: 547 NKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIV 604
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 605 TDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 653
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 55/232 (23%), Positives = 107/232 (46%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKHRLFIGNVP 57
+G + + +V F + E +A+E L ++ G +IK +A L N+
Sbjct: 347 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLS 405
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
N ED++++ + + I LV +++G A+IE+ + A AE + ++ +
Sbjct: 406 FNITEDELKE----VFEDAVEIRLVSQD---GRSKGIAYIEFKSEADAEKNLEEKQGAE- 457
Query: 118 KLDDNAPTVSWA------DPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+D + ++ + R ++S S + K L + NL T++ L+E+F K T
Sbjct: 458 -IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 513
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
+ +P G+ + Y F+ FA A +AL + K EI+G+ + L P+
Sbjct: 514 FIKVPQNPHGKSKG-YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 564
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 53/224 (23%), Positives = 97/224 (43%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+ Q + E K +KI+ S LFIGN+ N +++ A++++
Sbjct: 284 RKKEMTKQK----EAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FA 336
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L NR F ++++ + AE + + K+ N + P+ +S
Sbjct: 337 KNDLAAVDVRTGTNRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSK 391
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNL +IT+D LKE+F +I V ++ G+ + ++ F + A
Sbjct: 392 KVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKG-IAYIEFKSEADA 446
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ + EIDG+ + + ++ G NS S + T
Sbjct: 447 EKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKT 490
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 181 (68.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 55/230 (23%), Positives = 105/230 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDM 65
G +KG A++ F+++ A + +EE E+ G+ + K R W +
Sbjct: 431 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 490
Query: 66 RKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN- 114
++ + L +K PQN + +++G+AFIE+ A E +++ +++
Sbjct: 491 TLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEALNSC 547
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
K +++ + PR + ++ + K L+VK L +D T++ LKE F G + ++
Sbjct: 548 NKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIV 605
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 606 TDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 654
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 55/232 (23%), Positives = 107/232 (46%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKHRLFIGNVP 57
+G + + +V F + E +A+E L ++ G +IK +A L N+
Sbjct: 348 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLS 406
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
N ED++++ + + I LV +++G A+IE+ + A AE + ++ +
Sbjct: 407 FNITEDELKE----VFEDAVEIRLVSQD---GRSKGIAYIEFKSEADAEKNLEEKQGAE- 458
Query: 118 KLDDNAPTVSWA------DPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+D + ++ + R ++S S + K L + NL T++ L+E+F K T
Sbjct: 459 -IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 514
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
+ +P G+ + Y F+ FA A +AL + K EI+G+ + L P+
Sbjct: 515 FIKVPQNPHGKSKG-YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 565
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 53/224 (23%), Positives = 97/224 (43%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+ Q + E K +KI+ S LFIGN+ N +++ A++++
Sbjct: 285 RKKEMTKQK----EAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FA 337
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L NR F ++++ + AE + + K+ N + P+ +S
Sbjct: 338 KNDLAAVDVRTGTNRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSK 392
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNL +IT+D LKE+F +I V ++ G+ + ++ F + A
Sbjct: 393 KVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKG-IAYIEFKSEADA 447
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ + EIDG+ + + ++ G NS S + T
Sbjct: 448 EKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKT 491
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 181 (68.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 55/230 (23%), Positives = 105/230 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDM 65
G++KG A++ F+++ A + +EE E+ G+ + K R W +
Sbjct: 427 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 486
Query: 66 RKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN- 114
++ + L +K PQN +++G+AFIE+ A E +++ +++
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEF---ASFEDAKEALNSC 543
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
K +++ + PR + ++ + K L+VK L +D T++ LKE F G + ++
Sbjct: 544 NKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIV 601
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 602 TDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 650
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 55/224 (24%), Positives = 102/224 (45%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+ Q +E+ E K +K++ S + LFIGN+ N +++ A+++ P
Sbjct: 281 RKKEMTKQ--KEVP--EAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISE--PFAK 334
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+ V D + NR F ++++ + AE + + K+ N + P+ +S
Sbjct: 335 NDLAVVDVRTGT-NRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSK 388
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNL +IT+D LKE+F +I V ++ G+ + ++ F + A
Sbjct: 389 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKG-IAYIEFKSEADA 443
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ + EIDG+ + + ++ G NS S + T
Sbjct: 444 EKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKT 487
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 55/228 (24%), Positives = 104/228 (45%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDM 65
G +KG A++ F+++ A + +EE E+ G+ + K R W +
Sbjct: 284 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 343
Query: 66 RKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN- 114
++ + L +K PQN + +++G+AFIE+ A E +++ +++
Sbjct: 344 TLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEALNSC 400
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
K +++ + PR + ++ + K L+VK L +D T++ LKE F G + ++
Sbjct: 401 NKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIV 458
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
+ G + +GFV F A A + E EIDG + AKP+
Sbjct: 459 TDRETGSSKG-FGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPK 505
Score = 144 (55.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 55/232 (23%), Positives = 107/232 (46%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKHRLFIGNVP 57
+G + + +V F + E +A+E L ++ G +IK +A L N+
Sbjct: 201 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLS 259
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
N ED++++ + + I LV +++G A+IE+ + A AE + ++ +
Sbjct: 260 FNITEDELKE----VFEDAVEIRLVSQD---GRSKGIAYIEFKSEADAEKNLEEKQGAE- 311
Query: 118 KLDDNAPTVSWA------DPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+D + ++ + R ++S S + K L + NL T++ L+E+F K T
Sbjct: 312 -IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 367
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
+ +P G+ + Y F+ FA A +AL + K EI+G+ + L P+
Sbjct: 368 FIKVPQNPHGKSKG-YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 418
Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 49/208 (23%), Positives = 91/208 (43%)
Query: 34 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 93
E K +KI+ S LFIGN+ ++ E ++ A++ + +L NR
Sbjct: 152 EAKKQKIEGSEPTTPFNLFIGNLNKSVAE--LKVAISDL---FAKNDLAAVDVRTGTNRK 206
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKD 153
F ++++ + AE + + K+ N + P+ +S + L KNL +
Sbjct: 207 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSKKVRAARTLLAKNLSFN 261
Query: 154 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
IT+D LKE+F +I V ++ G+ + ++ F + A K L+ + EIDG+
Sbjct: 262 ITEDELKEVFEDAVEIRLV----SQDGRSKG-IAYIEFKSEADAEKNLEEKQGAEIDGRS 316
Query: 214 LDCSLAKPQADQKTSGGSNSQKSALNPT 241
+ + ++ G NS S + T
Sbjct: 317 VSLYYTGEKGQRQERTGKNSTWSGESKT 344
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 176 (67.0 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 60/201 (29%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 86 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 143
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 144 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 197
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K N +K + + A
Sbjct: 198 GRIITSRILVDQVTGGSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFAN-NP 255
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKTS SQ + N YP
Sbjct: 256 SQKTSQALLSQLYQSPNRRYP 276
Score = 105 (42.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 37/145 (25%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 120 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 179
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 180 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + ++S A
Sbjct: 238 QKPSGAAEPITVKFANNPSQKTSQA 262
Score = 61 (26.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 387 NGYRLGDRVLQVS 399
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 179 (68.1 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 57/232 (24%), Positives = 113/232 (48%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ----AKH----RLFIGNVP 57
S ++ GYA+V + E +AIEELN ++G+ + +Q A+ +FI N+
Sbjct: 89 SKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLH 148
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + G ++S ++ D Q++ F F+ Y AE + + ++
Sbjct: 149 PAIDNKALHDTFSAFGK-ILSCKVATD--EFGQSKCFGFVHYETAEAAEAAIENVNG--M 203
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+D V + S ++KA +YVKN+ + +++ ++LF+ GKIT +
Sbjct: 204 LLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIY 263
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
+ + G+ + +GFV+F + SA+KA++ EI+GQ + A+ + ++
Sbjct: 264 LEKDQDGKSKG-FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRER 314
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 49/198 (24%), Positives = 87/198 (43%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
K ++ K +A +++ N+ N+ E+ K + G + SI L KD +++GF
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-ITSIYLEKDQDG--KSKGF 275
Query: 95 AFIEYYNHACA-----EYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQV 142
F+ + +H A E + ++++ K K + + E A Q
Sbjct: 276 GFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQG 335
Query: 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
L+VKNL I ++L+E F G IT + + G+ + +GFV F A KA+
Sbjct: 336 VNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKG-FGFVCFTTPEEATKAIT 394
Query: 203 NTEKYEIDGQVLDCSLAK 220
I+G+ L +LA+
Sbjct: 395 EMNTRMINGKPLYVALAQ 412
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 168 (64.2 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 58/208 (27%), Positives = 99/208 (47%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWG 61
SG + YA+V F+ + A A++ +N +KGK ++ +Q L +GN+ +N
Sbjct: 49 SGSSN-YAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLD 107
Query: 62 EDDMRKA----VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ KA V+ G ++S +V D N ++G+ F+ + H AE + +KM+
Sbjct: 108 KSINNKALYDTVSAFG-NILSCNVVCDE---NGSKGYGFVHFETHEAAERAIKKMNG--M 161
Query: 118 KLDDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+ V R AE A A + +Y+KN +D+ +RLK+LF G V
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKAL 201
+ + G+ + +GFV F A KA+
Sbjct: 222 VMTDESGKSKG-FGFVSFERHEDAQKAV 248
Score = 118 (46.6 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T E A +AI+++N L G+K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 118 (46.6 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D + + +A++ + + AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V ++VKNL K I L + + G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + YGFVHF +A +A+K ++G+ + K + +++
Sbjct: 126 LSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GARAKE 189
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 175 (66.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 61/226 (26%), Positives = 104/226 (46%)
Query: 20 KELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDD--MRKAVTKIGPGVI 77
K+ S+ EE E KK K + +F+G + +W DD ++K IG GVI
Sbjct: 139 KKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRL--SWSIDDEWLKKEFEHIG-GVI 195
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT---VSWADPRNA 134
++ + + +++RG+ ++++ N + AE + Q+M + D P +S + P
Sbjct: 196 GARVIYE-RGTDRSRGYGYVDFENKSYAEKAIQEMQGKEI---DGRPINCDMSTSKPAGN 251
Query: 135 ESSA-------ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
A + L++ NL + +D + ELFA HG++ V IP ++ +G
Sbjct: 252 NDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFG 311
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQV--LDCSLAKPQADQKTSGGS 231
+V F+ A KAL + ID + LD S +P D GGS
Sbjct: 312 YVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGR-GGS 356
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 174 (66.3 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 59/201 (29%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKTS SQ + N YP
Sbjct: 219 SQKTSQALLSQLYQSPNRRYP 239
Score = 106 (42.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 37/145 (25%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 143 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + ++S A
Sbjct: 201 QKPSGATEPITVKFANNPSQKTSQA 225
Score = 61 (26.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 350 NGYRLGDRVLQVS 362
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 170 (64.9 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 47/176 (26%), Positives = 88/176 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LF+GN+P + D A+ G + I V ++ +Q+RGF F+ AE +
Sbjct: 114 KLFVGNLP--YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK----ALYVKNLPKDITQDRLKELFAH 165
+K ++ F+++ TV+ A PR + +V +YV NLP D+ RL+ LF+
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 166 HGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
HGK+ V+ + G+ R +GFV + + A+ + ++G+ + ++A+
Sbjct: 230 HGKVVDARVVSDRETGRSRG-FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA--------------QAKH 49
+D+ +++G+ FVT T E A +A+E+ NS E+ G+++ + A A
Sbjct: 148 RDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF 207
Query: 50 RLFIGNVPRNWGEDDMR--KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 101
R+++GN+P W D R + ++ G V+ +V D + ++RGF F++ N
Sbjct: 208 RIYVGNLP--WDVDSGRLERLFSEHGK-VVDARVVSD-RETGRSRGFGFVQMSN 257
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 177 (67.4 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 56/228 (24%), Positives = 110/228 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGE 62
GY +V + T + AS+A+ ELN L G+ I+ S R +FI N+ ++
Sbjct: 87 GYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDH 146
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + GP ++S ++ DP + Q++G+ F++Y A+ + K++ L+D
Sbjct: 147 KALHETFSAFGP-ILSCKVAVDP--SGQSKGYGFVQYDTDEAAQGAIDKLNG--MLLNDK 201
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + + +VK +YVKNL + ++ + L ++F G T VI + G
Sbjct: 202 QVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDG 259
Query: 181 QERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ +S+ +GFV+F A +A+ D + A+ +++++T
Sbjct: 260 EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 52/209 (24%), Positives = 93/209 (44%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + ++++ K + G S +++D + +++GF F+ + N A +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVD 282
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
++ F DD V A ++ E++ SQ LYVKNL + +T
Sbjct: 283 ALNGKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTD 340
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
D+L+E FA G IT + G R GFV F+ A +A+ I + L
Sbjct: 341 DKLREHFAPFGTITSCKVMRDPSGVSRGS-GFVAFSTPEEATRAITEMNGKMIVTKPLYV 399
Query: 217 SLAKPQADQKTSGGSNSQKSALNPT-YPP 244
+LA+ + D+K +Q S + P PP
Sbjct: 400 ALAQRKEDRKAR--LQAQFSQMRPVNMPP 426
Score = 112 (44.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 52/185 (28%), Positives = 71/185 (38%)
Query: 135 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 194
E++ SQ LYVKNL + +T D+L+E FA G IT + G R GFV F+
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS-GFVAFSTP 377
Query: 195 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN-SQKSALN--PT-------YPP 244
A +A+ I + L +LA+ + D+K + SQ +N P YPP
Sbjct: 378 EEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPP 437
Query: 245 HXXXXXXXXXXXXXXXXXXXX-XFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGV 303
F G PGG M +P + G QQ
Sbjct: 438 GGPPMGQQLFYGQGPPAMIPQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQ 497
Query: 304 QQHNP 308
QQ P
Sbjct: 498 QQQRP 502
Score = 98 (39.6 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 34/148 (22%), Positives = 67/148 (45%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKH-RLFI 53
SG++KGY FV + T E A AI++LN L K++ S + K +++
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ++++ K + G S +++D + +++GF F+ + N A + ++
Sbjct: 229 KNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVDALN 285
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQ 141
F DD V A ++ + Q
Sbjct: 286 GKTF--DDKEWFVGKAQKKSERETELKQ 311
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 176 (67.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 59/228 (25%), Positives = 109/228 (47%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA++ F+ A A++ +N +KG+ I+ +Q L +GN+ +N E
Sbjct: 53 GYAYINFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + A + + M+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAANRAIETMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +DI ++LK +F GK V + +
Sbjct: 167 KVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV+F A +A+ E++G+VL A+ + +++
Sbjct: 227 RGRSRG-FGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQ 273
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 57/209 (27%), Positives = 93/209 (44%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGED-DMRKA---VTKIGPGVISIELVKDPQNANQN 91
K +K + + AK F +N+GED D K T+ G +S+ ++ D + ++
Sbjct: 174 KSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGK-TLSVCVMTDERG--RS 230
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS----QVKA--- 144
RGF F+ + NH A + +M N K +L+ V A R Q+K
Sbjct: 231 RGFGFVNFVNHGDARRAVTEM-NGK-ELNGRVLYVGRAQKRLERQGELKRKFEQIKQERI 288
Query: 145 -------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
LYVKNL I ++L++ FA +G IT + G R +GFV F+ A
Sbjct: 289 QRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM-TDGGHSRG-FGFVCFSSPEEA 346
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQK 226
KA+ + + L +LA+ + ++K
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRKEERK 375
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 177 (67.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 60/228 (26%), Positives = 110/228 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMR 66
GYA+V + T +A+EELN +KG+ + +Q A + GNV +N
Sbjct: 103 GYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 162
Query: 67 KAV--TKIGPG-VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
KA+ T G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 163 KALHDTFAAFGNILSCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEKK 218
Query: 124 PTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAK 178
V P+ S ++KA +YVKN+ ++T D + LF +G +T + +
Sbjct: 219 VYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQE 278
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV+F A KA++ + E GQ L A+ + +++
Sbjct: 279 TGKSRG-FGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHERE 325
Score = 129 (50.5 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 37/127 (29%), Positives = 62/127 (48%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 184 ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTN 243
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +D+ R K G V S L +D Q ++RGF F+ + +H A + Q
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARD-QETGKSRGFGFVNFTSHEDASKAVQ 301
Query: 111 KMSNPKF 117
+++ +F
Sbjct: 302 ELNEKEF 308
Score = 123 (48.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 52/188 (27%), Positives = 87/188 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
K ++ K +A +++ N+ +D+ R K G V S L +D Q ++RGF
Sbjct: 228 KDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARD-QETGKSRGF 285
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDD----NAPTVSWADPRNAES-SAASQVKA----- 144
F+ + +H A + Q+++ +F + A + +S AA Q KA
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQG 345
Query: 145 --LYVKNLPKDITQDRLKELFAHHGKIT--KVVIPP-AKPGQE-RSRYGFVHFAERSSAM 198
LY+KNL ++ ++L++LF+ G IT KV+ +PG+E S+ G E S
Sbjct: 346 VNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEG-----EESEKN 400
Query: 199 KALKNTEK 206
K K EK
Sbjct: 401 KENKPEEK 408
Score = 48 (22.0 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
+K G+ + +GFV FA A KA+ + ++ + L +LA+
Sbjct: 427 SKLGKSKG-FGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQ 469
Score = 39 (18.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 270 PMVYGRGAAPGGM 282
P+ YG G+ PG M
Sbjct: 507 PVFYGPGSQPGFM 519
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 175 (66.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 58/229 (25%), Positives = 109/229 (47%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KG+ ++ +Q L +GN+ +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+ F+ + AE + KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIDKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKE+F +G V +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ +++G+ + A+ + +++T
Sbjct: 227 NGKSKG-FGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 177 (67.4 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 56/217 (25%), Positives = 101/217 (46%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-AKHRLFIGNVPRNWGEDDM 65
G K +A V +A E+LN+ +LK + + A LF+GN+ + G++ +
Sbjct: 360 GSKKDFAIVQMENHTIAK---EKLNNSKLKNCTLSITDIPLADSLLFVGNLGNDVGKEQL 416
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+K K G + I L+K+ + +N+G+AFI+Y A ++ + + F +
Sbjct: 417 KKMFEKHGT-IDRIILIKN-RRTGENKGYAFIDYRTKLQASTAKSSLGSIVF--NRRTLR 472
Query: 126 VSWADPRNAESSAASQVKALYVKNLPKDITQ-DRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+ N S S K ++V LP+ L+++F+ GKI + P GQ R
Sbjct: 473 VDWAENCNTMESMHS--KTIFVDRLPRSFADVPILRKVFSPFGKIKDCNVVPNYYGQPRG 530
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ F+ + A KA + + ++ G + + A P
Sbjct: 531 -FAFIDYNNVEDAEKAQRMMNEKDLKGYKIRVNFANP 566
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 45/140 (32%), Positives = 72/140 (51%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK------CSAAQAKHR--LF 52
+K + +GE KGYAF+ +RTK AS A L S + ++ C+ ++ H +F
Sbjct: 432 IKNRRTGENKGYAFIDYRTKLQASTAKSSLGSIVFNRRTLRVDWAENCNTMESMHSKTIF 491
Query: 53 IGNVPRNWGEDD-MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
+ +PR++ + +RK + G + +V P Q RGFAFI+Y N AE + Q+
Sbjct: 492 VDRLPRSFADVPILRKVFSPFGK-IKDCNVV--PNYYGQPRGFAFIDYNNVEDAEKA-QR 547
Query: 112 MSNPKFKLDDNAPTVSWADP 131
M N K L V++A+P
Sbjct: 548 MMNEK-DLKGYKIRVNFANP 566
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 170 (64.9 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 42 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 99
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 100 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 153
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 154 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 211
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 212 SQKSSQALLSQLYQSPNRRYP 232
Score = 109 (43.4 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 76 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 135
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 136 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 194 QKPSGATEPITVKFANNPSQKSSQA 218
Score = 62 (26.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 330 NGYRLGDRVLQVSFKTNKA 348
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 47/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D Q+ G+ F+ Y + AE
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRDKITEGQSLGYGFVNYIDPKDAE 122
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 123 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 177 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 212
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 111 KMSN-PKFKLDDNAP-TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
++SN P N P T++ + P + ++ S+ L V LP+++TQ+ LK LF G+
Sbjct: 33 QLSNGPTCNNTANCPNTINCSSPVESNNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGE 91
Query: 169 IT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223
I K+V GQ YGFV++ + A KA+ + + + S A+P +
Sbjct: 92 IESCKLVRDKITEGQSLG-YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
Score = 96 (38.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIGNVPRNW 60
G++ GY FV + + A +AI LN L+ K IK S A+ A R L++ +P+
Sbjct: 105 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 164
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++ K
Sbjct: 165 TQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 65 (27.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 368 NGYRLGDRVLQVS 380
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 167 (63.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 52/216 (24%), Positives = 98/216 (45%)
Query: 24 SQAIEELNSCELKGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 82
S A + N +G +I S + ++F+G + + + D++ TK G V+ +
Sbjct: 44 SAAPQAGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIK 102
Query: 83 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 142
DP N ++RGF FI + + E + + + +LD DP+ A + V
Sbjct: 103 MDP-NTGRSRGFGFILFKDATSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPV 153
Query: 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
K ++V L + T+++++E F G+I + +P +R + F+ F E K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 203 NTEKYEIDGQVLDCSLAKP----QADQKTSGGSNSQ 234
+ + I G + +A+P Q Q SGG ++
Sbjct: 214 K-KFHTISGSKCEIKVAQPKEVYQQQQYGSGGRGNR 248
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 170 (64.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 109 (43.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 138 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 170 (64.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 109 (43.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 138 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 174 (66.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 60/234 (25%), Positives = 114/234 (48%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWG 61
S + GYA++ F+ A +A++ +N +KG+ ++ +Q L +GNV +N
Sbjct: 48 SRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLD 107
Query: 62 EDDMRKAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ KA+ + G ++S ++V D N +RG F+ + A + Q M+
Sbjct: 108 DSIDNKALYDTFSAFG-NILSCKVVCDE---NGSRGHGFVHFETQEAATRAIQTMNG--M 161
Query: 118 KLDDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+D V R AE A A + +Y+KN D+ +RL+E+F+ GK V
Sbjct: 162 LLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVK 221
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV+F + A KA+ + EI+G+++ A+ + ++++
Sbjct: 222 VMMDHTGRSKG-FGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQS 274
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 170 (64.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYP 239
Score = 109 (43.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 143 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 201 QKPSGATEPITVKFANNPSQKSSQA 225
Score = 62 (26.9 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 350 NGYRLGDRVLQVSFKTNKA 368
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 170 (64.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 207 SQKSSQALLSQLYQSPNRRYP 227
Score = 109 (43.4 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 189 QKPSGATEPITVKFANNPSQKSSQA 213
Score = 62 (26.9 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 170 (64.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 207 SQKSSQALLSQLYQSPNRRYP 227
Score = 109 (43.4 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 189 QKPSGATEPITVKFANNPSQKSSQA 213
Score = 62 (26.9 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 170 (64.9 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 109 (43.4 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 138 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 170 (64.9 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 109 (43.4 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 138 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 196 QKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 170 (64.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 60 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 117
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 118 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 171
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 172 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 229
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 230 SQKSSQALLSQLYQSPNRRYP 250
Score = 109 (43.4 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 94 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 153
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 154 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 212 QKPSGATEPITVKFANNPSQKSSQA 236
Score = 62 (26.9 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 361 NGYRLGDRVLQVSFKTNKA 379
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 170 (64.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 48 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 105
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 106 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 159
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 160 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 217
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 218 SQKSSQALLSQLYQSPNRRYP 238
Score = 109 (43.4 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 82 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 141
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 142 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 200 QKPSGATEPITVKFANNPSQKSSQA 224
Score = 62 (26.9 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 363 NGYRLGDRVLQVSFKTNKA 381
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 170 (64.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYP 239
Score = 109 (43.4 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 143 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 201 QKPSGATEPITVKFANNPSQKSSQA 225
Score = 62 (26.9 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 170 (64.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QK+S SQ + N YP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYP 239
Score = 109 (43.4 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 143 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 201 QKPSGATEPITVKFANNPSQKSSQA 225
Score = 62 (26.9 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 205 EKYEIDGQVLDCSLAKPQA 223
Y + +VL S +A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 135 (52.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 37/177 (20%), Positives = 84/177 (47%)
Query: 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107
+ +L + +P + D ++ ++K G I ++KD ++ ++RGF ++ + A AE
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCI-VMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
++ + F L + V A P+ A +V ++V +P +++ + F +G
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+IT + +P ++ GF+ F+ S +++T +++ G + A P+ D
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKED 170
Score = 112 (44.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIP--PAKPGQERSRYGFVHFAERSSAMKALK 202
++V LP++ + D L++ F G I IP P + G +GFV FAE A + +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG--FGFVTFAENGVADRVAR 299
Query: 203 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
+ +EI GQ + A P + S G++S S+ P Y
Sbjct: 300 RS--HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEY 337
Score = 103 (41.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 32/107 (29%), Positives = 54/107 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEE---LNS--CELKGKKIKCSAAQ-AKH--RLF 52
MK + +G ++G+ +VTF + E A A++ L + E+K K Q AK R+F
Sbjct: 35 MKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVTRIF 94
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+ +P + E D R + G + + + KD N+ Q+RG FI +
Sbjct: 95 VARIPSSVSESDFRSHFERYGE-ITDLYMPKD-YNSKQHRGIGFITF 139
Score = 42 (19.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
K +S + +G F+TF + + +E+ + +L G + A K
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDLMEDTH--DLGGTTVAVDRATPK 168
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 168 (64.2 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 41/172 (23%), Positives = 82/172 (47%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA--SQVKALYVKNLPKDITQDRLKELFA 164
K TV +A+ + +++ A SQ+ + P + Q + F+
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFS 240
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 325 NGYRLGDRVLQVS 337
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 165 (63.1 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 49/204 (24%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 113
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 114 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 225 EIKVAQPKEVYQQQQYGSGGRGNR 248
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 167 (63.8 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 50/216 (23%), Positives = 103/216 (47%)
Query: 8 EAKGYAFVTFRTKELASQAI----EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGED 63
+AK YA L Q I ++L + ++ ++ + A R+++G++ GED
Sbjct: 68 KAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMC--RVYVGSIYYELGED 125
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF---KLD 120
+R+A GP + SI++ D +++GFAF+EY A+ + ++M++ +
Sbjct: 126 TIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 183
Query: 121 DNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P+ + A P + + A +YV ++ +D++ D +K +F GKI +
Sbjct: 184 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 243
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ YGF+ + + S+ A+ + +++ GQ L
Sbjct: 244 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 279
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 165 (63.1 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 49/204 (24%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 113
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 114 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 225 EIKVAQPKEVYQQQQYGSGGRGNR 248
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 168 (64.2 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 101 (40.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQA 213
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 338 NGYRLGDRVLQVS 350
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 168 (64.2 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 101 (40.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQA 213
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 339 NGYRLGDRVLQVS 351
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 172 (65.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 59/228 (25%), Positives = 111/228 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAANKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + L+ELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ E+ G+ + A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQ 273
Score = 127 (49.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A++AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +R+ ++ G +S+++++D + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 127 (49.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 50/207 (24%), Positives = 98/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +R+ ++ G +S+++++D + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRDC--SGKS 230
Query: 92 RGFAFIEYYNH-----ACAEYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A E + ++MS K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 172 (65.6 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 59/228 (25%), Positives = 111/228 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F+ A +A++ +N +KGK I+ +Q L +GNV +N +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D N ++G+AF+ + A + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDE---NGSKGYAFVHFETQEAANKAIEKMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + L+ELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ E+ G+ + A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQ 273
Score = 127 (49.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A++AIE++N L +K+ K A+ AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +R+ ++ G +S+++++D + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMS 113
+M+
Sbjct: 250 EMN 252
Score = 127 (49.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 50/207 (24%), Positives = 98/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +R+ ++ G +S+++++D + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRDC--SGKS 230
Query: 92 RGFAFIEYYNH-----ACAEYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A E + ++MS K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 230 GSNSQK 235
G+ +++
Sbjct: 184 GAKAKE 189
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 167 (63.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 47/159 (29%), Positives = 85/159 (53%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y N AE
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLNPNDAE 89
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SS + + LY+ LPK +TQ ++E+F +
Sbjct: 90 RAISTLNG--LRLQSKTIKVSYARP----SSDSIKDANLYISGLPKTMTQKDVEEMFGRY 143
Query: 167 GKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203
G+I ++V++ A G R F+ F +R+ A A+K+
Sbjct: 144 GRIINSRVLVDQAS-GLSRG-VAFIRFDKRAEAEDAIKD 180
Score = 113 (44.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 34/122 (27%), Positives = 60/122 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------RLFIG 54
++ K +G + GY FV + A +AI LN L+ K IK S A+ L+I
Sbjct: 66 IRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYIS 125
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + D+ + + G +I+ ++ D Q + +RG AFI + A AE + + ++
Sbjct: 126 GLPKTMTQKDVEEMFGRYGR-IINSRVLVD-QASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Query: 115 PK 116
K
Sbjct: 184 QK 185
Score = 63 (27.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ NL +D + L ++F G +T V + + +GFV A A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 205 EKYEIDGQVLDCS 217
Y + ++L S
Sbjct: 320 NGYRLGDKILQVS 332
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 168 (64.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 122
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 123 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 177 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 234
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 235 SQKTNQAILSQLYQSPNRRYP 255
Score = 101 (40.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 99 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 159 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 217 QKPPGATEPITVKFANNPSQKTNQA 241
Score = 65 (27.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 366 NGYRLGDRVLQVS 378
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 168 (64.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 57/201 (28%), Positives = 99/201 (49%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P++ +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVDPKDAE 122
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 123 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K N +K + + A
Sbjct: 177 GRIITSRILVDQVTGMSRG-VGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFAN-NP 234
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 235 SQKTNQAILSQLYHSPNRRYP 255
Score = 107 (42.7 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 99 VRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 159 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 217 QKPPAATEPITVKFANNPSQKTNQA 241
Score = 65 (27.9 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 168 (64.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 123
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 124 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 178 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 235
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 236 SQKTNQAILSQLYQSPNRRYP 256
Score = 101 (40.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 100 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 160 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 218 QKPPGATEPITVKFANNPSQKTNQA 242
Score = 65 (27.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 168 (64.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 123
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 124 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 178 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 235
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 236 SQKTNQAILSQLYQSPNRRYP 256
Score = 101 (40.6 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 100 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 160 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 218 QKPPGATEPITVKFANNPSQKTNQA 242
Score = 62 (26.9 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 205 EKYEIDGQVL 214
Y + +VL
Sbjct: 368 NGYRLGDRVL 377
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 172 (65.6 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 56/242 (23%), Positives = 117/242 (48%)
Query: 4 KDSGEAK--GYAFVTFRTKELASQAIEELNSCELKGK--KIKCSAAQAKHR------LFI 53
+DS K GYA+V + A +A++ LN +KG+ ++ S R +F+
Sbjct: 49 RDSVTRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFV 108
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ ++ + + G ++S ++ D +++ + F+ Y + A+ + +K++
Sbjct: 109 KNLDKSIDNKALFDTFSMFG-NILSCKVATD--EFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
+L V ++ ++ ++ LYVKN P +T+ L++LF +G+IT ++
Sbjct: 166 G--VQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMI 223
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--DGQVLDC-SLAKPQADQKTSGG 230
+ K + ++ F+++A+ SA A+ N +I DGQ+ + K +A TSG
Sbjct: 224 V---KMDNKNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGA 280
Query: 231 SN 232
+N
Sbjct: 281 AN 282
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 172 (65.6 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 56/242 (23%), Positives = 117/242 (48%)
Query: 4 KDSGEAK--GYAFVTFRTKELASQAIEELNSCELKGK--KIKCSAAQAKHR------LFI 53
+DS K GYA+V + A +A++ LN +KG+ ++ S R +F+
Sbjct: 49 RDSVTRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFV 108
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ ++ + + G ++S ++ D +++ + F+ Y + A+ + +K++
Sbjct: 109 KNLDKSIDNKALFDTFSMFG-NILSCKVATD--EFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
+L V ++ ++ ++ LYVKN P +T+ L++LF +G+IT ++
Sbjct: 166 G--VQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMI 223
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--DGQVLDC-SLAKPQADQKTSGG 230
+ K + ++ F+++A+ SA A+ N +I DGQ+ + K +A TSG
Sbjct: 224 V---KMDNKNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGA 280
Query: 231 SN 232
+N
Sbjct: 281 AN 282
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 165 (63.1 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 49/204 (24%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 113
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 114 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 225 EIKVAQPKEVYQQQQYGSGGRGNR 248
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 162 (62.1 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 118
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 119 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 170
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 230 EIKVAQPKEVYQQQQYGSGGRGNR 253
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 162 (62.1 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 118
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 119 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 170
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 230 EIKVAQPKEVYQQQQYGSGGRGNR 253
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 169 (64.5 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 58/239 (24%), Positives = 102/239 (42%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------KC-----SAAQAKHRLF 52
++G ++G A++ F+T+ +A +A+EE +++G+ I K A A L
Sbjct: 412 NTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLV 471
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + ED ++ K +SI + PQN + +G+AF+E+ N ++ + +
Sbjct: 472 VNNLAFSASEDSLQSVFEK----AVSIRI---PQNNGRPKGYAFVEFENVEDSKEALENC 524
Query: 113 SNPKFKLDDNAPTVSWADPRNAESSAASQ--VKALYVKNLPKDITQDRLKELFAHHGKIT 170
+N + S D + K L+VK L D T LK+ F G I
Sbjct: 525 NNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSF--DGAIA 582
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+ G + +GFV F A + + EIDG + AKP+ + G
Sbjct: 583 ARIATDRDTGSSKG-FGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAKPKGEGGRGG 640
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 59/236 (25%), Positives = 105/236 (44%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFIG 54
G K + +V F ++E +A+E LN +L G+ +K A++K LF+
Sbjct: 327 GGTKKFGYVDFASEEELQKALE-LNGKKLLGQPVKLDKARSKENSQENKKERDARTLFVK 385
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+P + +DD+R+ + ++++ N +RG A+IE+ A AE + ++
Sbjct: 386 NLPYSITQDDLREIFDQ------AVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQG 439
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
+ + R A S K L V NL ++D L+ +F K + I
Sbjct: 440 SDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFE---KAVSIRI 496
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
P G+ + Y FV F + +AL+N +I+G+ + L Q D++ GG
Sbjct: 497 PQNN-GRPKG-YAFVEFENVEDSKEALENCNNTDIEGRSI--RLEYSQNDRERGGG 548
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 42/189 (22%), Positives = 86/189 (45%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA----CAE 106
LF+GN+ N D+++ A++K +E ++D + + F ++++ + E
Sbjct: 292 LFLGNLNNNKDFDELKSAISKFFSKE-GLE-IQDVRLGGTKK-FGYVDFASEEELQKALE 348
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ +K+ KLD + + + E+ + L+VKNLP ITQD L+E+F
Sbjct: 349 LNGKKLLGQPVKLDK-----ARSKENSQENKKERDARTLFVKNLPYSITQDDLREIF--- 400
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +P G R ++ F + A KAL+ + ++ G+ + ++ Q
Sbjct: 401 DQAVDIRVPMGNTGTSRG-IAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQG 459
Query: 227 TSGGSNSQK 235
G ++ K
Sbjct: 460 GRGAPSASK 468
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 162 (62.1 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 74 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 131
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 132 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 183
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 184 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 242
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 243 EIKVAQPKEVYQQQQYGSGGRGNR 266
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 168 (64.2 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 56/228 (24%), Positives = 109/228 (47%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRK 67
YA++ F+ A +A++ +N +KG+ I+ +Q L +GNV +N E K
Sbjct: 54 YAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNK 113
Query: 68 AV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
A+ + G ++S ++V D + RG+ F+ + H A + Q M+ L+D
Sbjct: 114 ALYDTFSAFG-NILSCKVVCDEHGS---RGYGFVHFETHEAANRAIQTMNG--MLLNDRK 167
Query: 124 PTVS-WADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V + R E ++V +Y+KN +D+ RL+E+F+ G V +
Sbjct: 168 VFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS 227
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ R +GFV++ A KA+ E++G+++ A+ + ++++
Sbjct: 228 GRSRG-FGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQS 274
Score = 127 (49.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 52/187 (27%), Positives = 90/187 (48%)
Query: 58 RNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
+N+GED D +R+ + G +S++++ D ++ ++RGF F+ Y NH A+ + +M
Sbjct: 196 KNFGEDMDDKRLREIFSAFG-NTLSVKVMMD--DSGRSRGFGFVNYGNHEEAQKAVSEM- 251
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAAS----QVKA----------LYVKNLPKDITQDRL 159
N K +++ V A R S Q+K LYVKNL I DRL
Sbjct: 252 NGK-EVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
++ F +G IT + + G + +GFV F+ A KA+ + + L +LA
Sbjct: 311 RKEFLPYGTITSAKVM-TEGGHSKG-FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 220 KPQADQK 226
+ + ++K
Sbjct: 369 QRKEERK 375
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 167 (63.8 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 50/216 (23%), Positives = 103/216 (47%)
Query: 8 EAKGYAFVTFRTKELASQAI----EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGED 63
+AK YA L Q I ++L + ++ ++ + A R+++G++ GED
Sbjct: 70 KAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMC--RVYVGSIYYELGED 127
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF---KLD 120
+R+A GP + SI++ D +++GFAF+EY A+ + ++M++ +
Sbjct: 128 TIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 185
Query: 121 DNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P+ + A P + + A +YV ++ +D++ D +K +F GKI +
Sbjct: 186 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 245
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ YGF+ + + S+ A+ + +++ GQ L
Sbjct: 246 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 281
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 163 (62.4 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 50/205 (24%), Positives = 96/205 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 55 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 112
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL-PKD 153
FI + + A E + + + +LD DP+ A + VK ++V L P+
Sbjct: 113 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPES 164
Query: 154 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 165 PTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSK 223
Query: 214 LDCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 224 CEIKVAQPKEVYQQQQYGSGGRGNR 248
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 164 (62.8 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 53/231 (22%), Positives = 111/231 (48%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK---HRLFIGNV-PRNWG 61
S + GY +V F A +A+E +N +KGK I+ +Q + IGNV +N
Sbjct: 47 SHRSLGYGYVNFLQVGDAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLD 106
Query: 62 ED-DMRKAVTKIGP-G-VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+ D + P G ++S +++ D + + +G+ F+ Y + A+ + ++M N K
Sbjct: 107 KSIDNKTLYEHFSPFGKIMSSKVMTDEEGS---KGYGFVHYQDQRAADRAIEEM-NGKLL 162
Query: 119 LDDNAPTVSWADPRNAESSAA---SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
D + ++ E+ ++ +Y+KN D+ + L+ +F+ +G+ V +
Sbjct: 163 RDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVM 222
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + R+GFV F +A A+++ +I+GQ + A+ + +++
Sbjct: 223 KDASGKSK-RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQ 272
Score = 112 (44.5 bits), Expect = 0.00093, P = 0.00093
Identities = 44/195 (22%), Positives = 89/195 (45%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + + K F +N+G+D +R +K G +S++++KD + ++
Sbjct: 173 KSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQ-TLSVKVMKDA--SGKS 229
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+ F F+ + +H A+ + + M+ K++ A + E A
Sbjct: 230 KRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRA 289
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I + L++ F+ G I +V + + GQ + +G + F +A K
Sbjct: 290 RQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ-EAGQSKG-FGLICFFSPEAAAK 347
Query: 200 ALKNTEKYEIDGQVL 214
A+ E++G++L
Sbjct: 348 AMA-----EMNGRIL 357
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRTMAQTAIK 166
Score = 87 (35.7 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 35/152 (23%), Positives = 72/152 (47%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A+ + +
Sbjct: 111 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRTMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 69 (29.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRTMAQTAIK 166
Score = 87 (35.7 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 35/152 (23%), Positives = 72/152 (47%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A+ + +
Sbjct: 111 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRTMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 69 (29.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 464 NGFQIGMKRLKVQLKRSKNDSK 485
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRTMAQTAIK 166
Score = 87 (35.7 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 35/152 (23%), Positives = 72/152 (47%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A+ + +
Sbjct: 111 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRTMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 69 (29.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 464 NGFQIGMKRLKVQLKRSKNDSK 485
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 60 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 117
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 118 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 169
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 170 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 228
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 229 EIKVAQPKEVYQQQQYGSGGRGNR 252
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 118
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 119 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 170
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 215 DCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 230 EIKVAQPKEVYQQQQYGSGGRGNR 253
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRAMAQTAIK 166
Score = 91 (37.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A A+ + +
Sbjct: 111 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 69 (29.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRAMAQTAIK 166
Score = 91 (37.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A A+ + +
Sbjct: 111 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 69 (29.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 53/213 (24%), Positives = 101/213 (47%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA+V F E +AIE+LN +KG+ + +Q L GN+ +N D
Sbjct: 80 GYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDN 139
Query: 67 KAVT---KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN- 122
KA+ + ++S ++ D +N +++GF F+ + A+ + ++ +
Sbjct: 140 KALYDTFSVFGDILSSKIATD-ENG-KSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIY 197
Query: 123 -APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
AP +S + + + LYVKN+ + T ++ +ELFA G I + G+
Sbjct: 198 VAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGK 257
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV++ + A+KA++ E++G+ L
Sbjct: 258 LKG-FGFVNYEKHEDAVKAVEALNDSELNGEKL 289
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/184 (24%), Positives = 84/184 (45%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ N+ ++ ++ K GP ++S L KD + +GF F+ Y H A + +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGP-IVSASLEKDADG--KLKGFGFVNYEKHEDAVKAVE 277
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
+++ + L+ V A +N E A Q L+VKNL +
Sbjct: 278 ALNDSE--LNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++L+E FA +G IT + + G+ + +GFV F+ A KA+ + + G+ L
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 217 SLAK 220
++A+
Sbjct: 395 AIAQ 398
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 165 (63.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 103 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 160
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 161 IEECRILRGPDGLSRG-CAFVTFTTRAMAQTAIK 193
Score = 91 (37.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 78 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 137
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A A+ + +
Sbjct: 138 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKA 194
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 69 (29.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 490 NGFQIGMKRLKVQLKRSKNDSK 511
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 165 (63.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 103 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 160
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 161 IEECRILRGPDGLSRG-CAFVTFTTRAMAQTAIK 193
Score = 91 (37.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 78 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKL 137
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A A+ + +
Sbjct: 138 FIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKA 194
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 69 (29.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 431 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 490
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 491 NGFQIGMKRLKVQLKRSKNDSK 512
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 158 (60.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 45/185 (24%), Positives = 85/185 (45%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G + + + D++ TK G V + DP N ++RGF FI + E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGE-VTDCTIKMDP-NTGRSRGFGFILFKEPGSVE--- 55
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + +LD DP+ A + VK ++V L + T+++++E F G+I
Sbjct: 56 KVLEQKEHRLDGRL-----IDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 110
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QADQ 225
+ +P +R + F+ F E K L+ + + + G + +A+P Q Q
Sbjct: 111 EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKCEIKVAQPKEVYQQQQ 169
Query: 226 KTSGG 230
+SGG
Sbjct: 170 FSSGG 174
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 162 (62.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 57/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 101 (40.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQA 213
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 338 NGYRLGDRVLQVS 350
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 162 (62.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 57/201 (28%), Positives = 97/201 (48%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 223
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 224 DQKTSGGSNSQK-SALNPTYP 243
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 101 (40.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 36/145 (24%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +++ A
Sbjct: 189 QKPPGATEPITVKFANNPSQKTNQA 213
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 338 NGYRLGDRVLQVS 350
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 165 (63.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 42/155 (27%), Positives = 76/155 (49%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G +PR W ED +R+ G V I +++D QN Q++G F+ YY A +
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYG-AVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEA 113
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L+V + K ++ ++ +F+ +G+
Sbjct: 114 QNALHNMKILPGMHHPIQM--KPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQ 171
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203
I + I G R FV F R A A+K+
Sbjct: 172 IEECRILRGPDGLSRG-CAFVTFTARQMAQSAIKS 205
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 164 (62.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 47/198 (23%), Positives = 92/198 (46%)
Query: 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107
K L++G + ED +++ G VIS++++ D ++ + F+E+ + AE
Sbjct: 89 KRALYVGGLDPRVTEDILKQIFETTGH-VISVKIIPDKNFNSKGANYGFVEFDDPGAAER 147
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ Q ++ + + + V+WA N A S ++V +L ++ + L + F+
Sbjct: 148 AMQTLNGRR--IHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAF 205
Query: 167 GKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
G +++ V+ K G+ R YGFV F ER+ A KAL + + + + + C+ A +
Sbjct: 206 GSVSEARVMWDMKTGRSRG-YGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQP 264
Query: 226 KTSGGSNSQKSALNPTYP 243
S + PT P
Sbjct: 265 SISQQQAMAAMGMTPTTP 282
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 165 (63.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 56/235 (23%), Positives = 104/235 (44%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----KCSAAQAKH------RLFI 53
D +KG+ FV + T+E A +AI ++N + G+K+ K S + + +F
Sbjct: 133 DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFF 192
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + G D +++ + + G + +I ++ D + ++ GFA N AE ++ +
Sbjct: 193 KNLSEDVGPDQLKELLQQYGE-ITNITIMADDKGKSKGFGFA-----NFESAEAAKNVVE 246
Query: 114 NPKFKLDDNAPTVSWADP----RNAESSAASQVKA----LYVKNLPKDITQDRLKELFAH 165
N K+ P + R AE + K LY+KN+ I D+L+E+F+
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQ 306
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
G IT ++ +GFV + A +A+ I + L +LA+
Sbjct: 307 FGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQ 361
Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 56/226 (24%), Positives = 108/226 (47%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRK 67
YA+V + A +A++ LN+ ++GK + +Q L +GNV +N + K
Sbjct: 53 YAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHK 112
Query: 68 AV--TKIGPG-VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
A+ T G ++S ++V D + N ++GF F+ Y A+ + K++ N
Sbjct: 113 ALYDTFSAFGNILSCKVVTD--DGNSSKGFGFVHYETQESADKAIAKVNGMMI----NGQ 166
Query: 125 TVSWADP--RNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + P + E ++VK ++ KNL +D+ D+LKEL +G+IT + I G
Sbjct: 167 KV-FVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKG 225
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GF +F +A ++N G+ + A+ + +++
Sbjct: 226 KSKG-FGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIERE 270
Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 43/162 (26%), Positives = 77/162 (47%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ E + + ++G V +I + +D N ++ +A++ YYN A AE +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGL-VSNIRVCRDT-NTRRSLSYAYVNYYNGADAERALD 69
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++N + A + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 70 TLNNTPIR--GKACRIMWSQ-RDP-SLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNIL 125
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
+ G +GFVH+ + SA KA+ I+GQ
Sbjct: 126 SCKVV-TDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQ 166
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 57/230 (24%), Positives = 108/230 (46%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNW-GED 63
G++KG A++ F+++ A + +EE E+ G+ + + + + + G W GE
Sbjct: 428 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTS-TWSGES 486
Query: 64 ------DMRKAVTK--IGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN 114
++ + TK + +K PQN + + +G+AFIE+ A E +++ +++
Sbjct: 487 KTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHGKPKGYAFIEF---ASFEDAKEALNS 543
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
K++ T+ +S + K L+VK L +D T++ LKE F G + ++
Sbjct: 544 CN-KMEIEGRTIRLE--LQGSNSRSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIV 598
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 599 TDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 647
Score = 135 (52.6 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 54/228 (23%), Positives = 105/228 (46%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKHRLFIGNVP 57
+G + + +V F + E +A+E L ++ G +IK +A L N+
Sbjct: 345 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLS 403
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
N ED++++ + + I LV +++G A+IE+ + A AE + ++ +
Sbjct: 404 FNITEDELKE----VFEDAMEIRLVSQD---GKSKGIAYIEFKSEADAEKNLEEKQGAE- 455
Query: 118 KLDDNAPTVSWA------DPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+D + ++ + R ++S S + K L + NL T++ L+E+F K T
Sbjct: 456 -IDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFE---KAT 511
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
+ +P G+ + Y F+ FA A +AL + K EI+G+ + L
Sbjct: 512 FIKVPQNPHGKPKG-YAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 558
Score = 135 (52.6 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 51/224 (22%), Positives = 97/224 (43%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
R KE+ Q + E K +K++ S LFIGN+ N ++++ A++++
Sbjct: 282 RKKEMTKQK----EAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISEL---FA 334
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
+L NR F ++++ + AE + + K+ N + P+ +S
Sbjct: 335 KNDLAVVDVRTGTNRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSK 389
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+ L KNL +IT+D LKE+F +I V ++ G+ + ++ F + A
Sbjct: 390 KVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKG-IAYIEFKSEADA 444
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
K L+ + EIDG+ + + ++ G S S + T
Sbjct: 445 EKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKT 488
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 169 (64.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 60/188 (31%), Positives = 92/188 (48%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LFIG+VPR EDD+R + G V+ + L+KD + Q +G F++Y AE +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGD-VVEVALIKDRKTGEQ-QGCCFVKYATSEEAERAI 180
Query: 110 QKMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N P V +AD E A + K L+V +L K T ++E+FA +G
Sbjct: 181 RALHNQYTLPGAMGPIQVRYADGER-ERHGAIEHK-LFVASLNKQATAKEIEEIFAPYGH 238
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE-KYEIDG--QVLDCSLAKPQAD 224
+ V I K G +SR GFV F+ R A+ A+ Y + G Q L A P+
Sbjct: 239 VEDVYI--MKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRP 296
Query: 225 Q--KTSGG 230
+ ++ GG
Sbjct: 297 RPGESRGG 304
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 279 PGGMAMLPMLLPDGRIGYVLQQPGVQ 304
PG P+ L + ++G LQ P Q
Sbjct: 426 PGLPQNFPVQLQNNQLGQPLQGPAQQ 451
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 169 (64.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 60/188 (31%), Positives = 92/188 (48%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LFIG+VPR EDD+R + G V+ + L+KD + Q +G F++Y AE +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGD-VVEVALIKDRKTGEQ-QGCCFVKYATSEEAERAI 180
Query: 110 QKMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N P V +AD E A + K L+V +L K T ++E+FA +G
Sbjct: 181 RALHNQYTLPGAMGPIQVRYADGER-ERHGAIEHK-LFVASLNKQATAKEIEEIFAPYGH 238
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE-KYEIDG--QVLDCSLAKPQAD 224
+ V I K G +SR GFV F+ R A+ A+ Y + G Q L A P+
Sbjct: 239 VEDVYI--MKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRP 296
Query: 225 Q--KTSGG 230
+ ++ GG
Sbjct: 297 RPGESRGG 304
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 279 PGGMAMLPMLLPDGRIGYVLQQPGVQ 304
PG P+ L + ++G LQ P Q
Sbjct: 426 PGLPQNFPVQLQNNQLGQPLQGPAQQ 451
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 165 (63.1 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 56/228 (24%), Positives = 108/228 (47%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA++ F+ A +A++ +N +KG+ I+ +Q L +GNV +N E
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDN 112
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
KA+ + G ++S ++V D + RG+ F+ + A + Q M+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDEHGS---RGYGFVHFETQEAANRAIQTMNG--MLLNDR 166
Query: 123 APTVS-WADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + R E ++V +Y+KN +D+ RL+E+F+ G V +
Sbjct: 167 KVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV++ A KA+ E++G+++ A+ + +++
Sbjct: 227 TGRSRG-FGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273
Score = 124 (48.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 51/187 (27%), Positives = 89/187 (47%)
Query: 58 RNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
+N+GED D +R+ + G +S++++ D + ++RGF F+ Y NH A+ + +M
Sbjct: 196 KNFGEDMDDKRLREIFSAFG-NTLSVKVMMD--DTGRSRGFGFVNYGNHEEAQKAVSEM- 251
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAAS----QVKA----------LYVKNLPKDITQDRL 159
N K +++ V A R Q+K LYVKNL I DRL
Sbjct: 252 NGK-EVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
++ F+ +G IT + + G + +GFV F+ A KA+ + + L +LA
Sbjct: 311 RKEFSPYGTITSAKVM-TEGGHSKG-FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 220 KPQADQK 226
+ + ++K
Sbjct: 369 QRKEERK 375
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 160 (61.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 44/158 (27%), Positives = 85/158 (53%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVDPNDAD 93
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 94 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKDMEQLFSQY 147
Query: 167 GKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I +++++ G R GF+ F +R+ A +A+K
Sbjct: 148 GRIITSRILVDQVTAGISRG-VGFIRFDKRNEAEEAIK 184
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 70 VRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 129
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + DM + ++ G +I+ ++ D A +RG FI + AE + + ++
Sbjct: 130 GLPKTMSQKDMEQLFSQYGR-IITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 159 (61.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 45/182 (24%), Positives = 95/182 (52%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LF+GN+ + + + G I+ E++ + + +Q+RGF F+ + AE +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIA-EVIYN-RETDQSRGFGFVTMSSVDEAETAV 208
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAH 165
+K + ++ L+ TV+ A PR + A +V +YV NLP D+ RL++LF+
Sbjct: 209 EKFN--RYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 166 HGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
HGK+ + V+ + G+ R +GFV ++ +A+ + ++G+ + ++A+ +
Sbjct: 267 HGKVVEARVVYDRETGRSRG-FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
Query: 225 QK 226
++
Sbjct: 326 RR 327
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 163 (62.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 56/217 (25%), Positives = 104/217 (47%)
Query: 23 ASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV----TKIGP 74
A +A++ +N +KGK ++ +Q L +GN+ +N + KA+ + G
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG- 59
Query: 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADP 131
++S ++V D N ++G+ F+ + AE + +KM+ L+D V
Sbjct: 60 NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKE 114
Query: 132 RNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
R AE A A + +Y+KN +D+ +RLKELF G V + + G+ + +GFV
Sbjct: 115 REAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVS 173
Query: 191 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
F A KA+ E++G+ + A+ + +++T
Sbjct: 174 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 36/123 (29%), Positives = 66/123 (53%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 69 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 128
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 185
Query: 111 KMS 113
+M+
Sbjct: 186 EMN 188
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 160 (61.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 57/224 (25%), Positives = 105/224 (46%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GY +V FR A A+ +N + GK + +Q RL IGN+ +N +
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDN 119
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
+A+ + SI K + N ++G+A++ + + A A + M+ +L++ V
Sbjct: 120 RALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG--VRLNNRQVYV 177
Query: 127 S-WADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
+ P + ++ KA ++VKN D+ D+LKELF+ +G V + G+
Sbjct: 178 GRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGK 237
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
+ +GFV + +A KA+ + IDG+VL A+ + ++
Sbjct: 238 SKG-FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 126 (49.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 37/171 (21%), Positives = 83/171 (48%)
Query: 31 NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
N+ + K+++ Q +F+ ++P + ++D+ +K G V+S +++ DP+
Sbjct: 93 NNNSVNNKELELERDQTN--VFVKHLPYEFNDEDLENLFSKYGK-VLSSKVMIDPKG--N 147
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
+ G+ F+ + + + + +++ +++ N + ++ L++K L
Sbjct: 148 SYGYGFVRFSSPQESAAAIEELDGYQYQ---NKKLLCRLSNLYTNLNSKYPSNNLFIKPL 204
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
P D+T D+L++LF GKI + + GQ + GFV F+ A KA+
Sbjct: 205 PYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFA-GFVRFSSELDASKAI 254
Score = 108 (43.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 37/155 (23%), Positives = 73/155 (47%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------AKH---RLFIGNVP 57
G + GY FV F + + ++ AIEEL+ + + KK+ C + +K+ LFI +P
Sbjct: 146 GNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLP 205
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ +D +RK G +I +++ D N Q++ F+ + + A + M+ +
Sbjct: 206 YDVTDDQLRKLFEPFGK-IIECKVMLD-HNG-QSKFAGFVRFSSELDASKAIDAMNGVRI 262
Query: 118 KLDDNAP-TVSWADPRNAESSAASQ-VKALYVKNL 150
D P V +AD + S + ++ +Y + +
Sbjct: 263 NKDSGYPLVVKYADTEQQKISRKQRKMQTIYQEKI 297
Score = 106 (42.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 29/95 (30%), Positives = 43/95 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L+V +LP + L +LF+ GK+ V + K E YGFV F + A+K K
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 205 EKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
+ I + L L K + + SG S+ Q N
Sbjct: 831 NGFRIGSKFLKVKL-KNEKESMNSGKSHHQHQNQN 864
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 160 (61.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 47/157 (29%), Positives = 80/157 (50%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y AE
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYMEPKDAE 123
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+
Sbjct: 124 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQF 177
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F R A +A+K
Sbjct: 178 GRIITSRILVDQVTGVSRG-VGFIRFDRRVEAEEAIK 213
Score = 112 (44.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + + A +AI LN L+ K IK S A+ A R L++
Sbjct: 100 VRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + ++ + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 160 GLPKTMTQKELEQLFSQFGR-IITSRILVD-QVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A+ + +SS A
Sbjct: 218 QKPPGATEPITVKFANNPSQKSSQA 242
Score = 65 (27.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL D ++ L ++F G +T V + + +GFV A A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 367 NGYRLGDRVLQVS 379
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 159 (61.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 44/204 (21%), Positives = 97/204 (47%)
Query: 34 ELKGKKIKCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G + S++ + H ++FIG + ++ ++ K G S+ +++DP +
Sbjct: 2 ESEGSQSNLSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESM-VMRDPVT-KR 59
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
+RGF F+ + + A + + ++ + +LD A PR A+ ++ K ++V L
Sbjct: 60 SRGFGFVTFVDQAGVD---KVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGL 116
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
+ T + +K+ F GK+ ++ K +GFV F E ++ + +EI+
Sbjct: 117 SVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEIN 175
Query: 211 GQVLDCSLAKPQADQKTSGGSNSQ 234
++++C A+P+ +G S +
Sbjct: 176 NKMVECKKAQPKEVMSPTGSSRGR 199
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 163 (62.4 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 57/227 (25%), Positives = 108/227 (47%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GYA++ F+ A +A++ +N +KG+ I+ +Q L +GNV +N +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDN 112
Query: 67 KAV--TKIGPG-VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
KA+ T G ++S ++V D + RG+ F+ + A + Q M+ L+D
Sbjct: 113 KALYDTFSAFGDILSCKVVCDEYGS---RGYGFVHFETQEAANRAIQTMNG--MLLNDRK 167
Query: 124 PTVS-WADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V + R E ++V +Y+KN +D+ RLKE+F+ G V +
Sbjct: 168 VFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS 227
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV++ A KA+ E++G+++ A+ + +++
Sbjct: 228 GRSRG-FGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQ 273
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 52/186 (27%), Positives = 88/186 (47%)
Query: 58 RNWGED--DMR-KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+N+GED D R K + +S++++ D N+ ++RGF F+ Y NH A+ + +M N
Sbjct: 196 KNFGEDMDDKRLKEIFSAFGNTLSVKVMMD--NSGRSRGFGFVNYGNHEEAQKAVTEM-N 252
Query: 115 PKFKLDDNAPTVSWADPRNAESSAAS----QVKA----------LYVKNLPKDITQDRLK 160
K +++ V A R Q+K LYVKNL I DRL+
Sbjct: 253 GK-EVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
+ F+ +G IT + + G + +GFV F+ A KA+ + + L +LA+
Sbjct: 312 KEFSPYGTITSTKVM-TEGGHSKG-FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 221 PQADQK 226
+ ++K
Sbjct: 370 RKEERK 375
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 37/122 (30%), Positives = 65/122 (53%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--AAQAKHRLFIG-------N 55
D ++GY FV F T+E A++AI+ +N L +K+ ++ + L G N
Sbjct: 133 DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN 192
Query: 56 VP-RNWGED--DMR-KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
V +N+GED D R K + +S++++ D N+ ++RGF F+ Y NH A+ + +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD--NSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 112 MS 113
M+
Sbjct: 251 MN 252
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 162 (62.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 54/211 (25%), Positives = 103/211 (48%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR--------LFIG 54
+G++ YA++ F + AS A+ LN +LKGK ++ +Q A R L++
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVK 117
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + + + G ++S ++V++ N Q++GF F+++ A +R +
Sbjct: 118 NLDSSITSSCLERMFCPFG-SILSCKVVEE--NG-QSKGFGFVQFDTEQSAVSARSALHG 173
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVV 173
+ + + A +Q +YVKNL + +T D L LF+ +G ++ VV
Sbjct: 174 -SMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVV 232
Query: 174 IPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+ + G RSR +GFV+F +A KA+++
Sbjct: 233 V--MRDGMGRSRGFGFVNFCNPENAKKAMES 261
Score = 116 (45.9 bits), Expect = 0.00059, P = 0.00059
Identities = 41/201 (20%), Positives = 92/201 (45%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
K ++ + Q +++ N+ +D + ++ G V S+ +++D ++RGF
Sbjct: 189 KDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT-VSSVVVMRD--GMGRSRGFG 245
Query: 96 FIEYYNHACAEYSRQKM------SNPKF-----KLDDNAPTVSWADPRNAESSAASQVKA 144
F+ + N A+ + + + S F K D+ + N + +
Sbjct: 246 FVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSN 305
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
LYVKNL + + + RL+E+F +G+I + + G+ + +GFV F+ + +A +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKG-FGFVCFSNCEESKQAKRYL 364
Query: 205 EKYEIDGQVLDCSLAKPQADQ 225
+ +DG+ + +A+ + D+
Sbjct: 365 NGFLVDGKPIVVRVAERKEDR 385
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 158 (60.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 42/183 (22%), Positives = 86/183 (46%)
Query: 43 SAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
SA ++H ++FIG + D +R +K G + +++DP ++RGF F+ +
Sbjct: 12 SANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGE-IRECMVMRDP-TTKRSRGFGFVTF 69
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ A + + + P +LD A PR A+ ++ K ++V L + + +
Sbjct: 70 ADPASVD---KVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDV 126
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
K+ F GK+ ++ K +GFV F E ++ + +EI+ ++++C A
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNKMVECKKA 185
Query: 220 KPQ 222
+P+
Sbjct: 186 QPK 188
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 50/205 (24%), Positives = 97/205 (47%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV-ISIELVKDPQNANQNRG 93
+G +I S + ++F+G + + + D++ TK G V +I++V P N +++G
Sbjct: 50 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMV--P-NTGRSKG 106
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKD 153
F FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 107 FGFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPE 158
Query: 154 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
T+++++E F G+I + +P +R + F+ F E K L+ + + I G
Sbjct: 159 ATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK-KFHTISGSK 217
Query: 214 LDCSLAKP----QADQKTSGGSNSQ 234
+ +A+P Q Q SGG ++
Sbjct: 218 CEIKVAQPKEVYQQQQYGSGGRGNR 242
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILLDQATGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 111 (44.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + +M + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMSQKEMEQLFSQYGR-IITSRILLD-QATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 198 MKALKNTEKYEIDGQVLDCS 217
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILLDQATGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 111 (44.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + +M + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMSQKEMEQLFSQYGR-IITSRILLD-QATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 198 MKALKNTEKYEIDGQVLDCS 217
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 110 (43.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + +M + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 198 MKALKNTEKYEIDGQVLDCS 217
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 110 (43.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + +M + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 198 MKALKNTEKYEIDGQVLDCS 217
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 110 (43.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + +M + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 63 (27.2 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V NL + + L +LF G +T V + + +GFV A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 205 EKYEIDGQVLDCS 217
Y + +VL S
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 159 (61.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 167 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 110 (43.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIG 54
++ K +G++ GY FV + A +AI LN +L+ K IK S A+ A R L++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P+ + +M + ++ G +I+ ++ D Q +RG FI + AE + + ++
Sbjct: 131 GLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 115 PKFKLDDNAP-TVSWADPRNAESSAA 139
K L P TV +A+ + ++ A
Sbjct: 189 QK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 280 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 339
Query: 198 MKALKNTEKYEIDGQVLDCS 217
A+ + Y + +VL S
Sbjct: 340 AMAIASLNGYRLGERVLQVS 359
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 158 (60.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 185
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 186 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 245
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 246 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 295
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 163 (62.4 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 57/216 (26%), Positives = 106/216 (49%)
Query: 23 ASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV----TKIGP 74
A +A++ +N +KGK I+ +Q L +GNV +N + KA+ + G
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG- 163
Query: 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADP 131
++S ++V D N ++G+AF+ + A+ + +KM+ L+D V
Sbjct: 164 NILSCKVVCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKE 218
Query: 132 RNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
R AE A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV
Sbjct: 219 REAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVS 277
Query: 191 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + A KA++ EI G+V+ A+ + +++
Sbjct: 278 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 313
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/123 (30%), Positives = 69/123 (56%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 173 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 232
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 289
Query: 111 KMS 113
+M+
Sbjct: 290 EMN 292
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 214 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKS 270
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 139
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 271 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 330
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 331 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 388
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+ + + L +LA+ + ++K
Sbjct: 389 AVTEMNGRIVGSKPLYVALAQRKEERK 415
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 158 (60.7 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 42/183 (22%), Positives = 86/183 (46%)
Query: 43 SAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
SA ++H ++FIG + D +R +K G + +++DP ++RGF F+ +
Sbjct: 12 SANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGE-IRECMVMRDP-TTKRSRGFGFVTF 69
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ A + + + P +LD A PR A+ ++ K ++V L + + +
Sbjct: 70 ADPASVD---KVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDV 126
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
K+ F GK+ ++ K +GFV F E ++ + +EI+ ++++C A
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNKMVECKKA 185
Query: 220 KPQ 222
+P+
Sbjct: 186 QPK 188
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 158 (60.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 144
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 145 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 204
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 205 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 254
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 156 (60.0 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 44/178 (24%), Positives = 91/178 (51%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+++I N+ R+ + + G +++ + KD ++ N +RG+ F+ + + A +
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFG-NILNCNVAKD-EDGN-SRGYGFVHFDSEEAARAAI 170
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+K+ N + V + R+ E A+ K LYVKNL ++ T+ L+E+F +G+I
Sbjct: 171 EKV-NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRI 229
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKPQADQK 226
T + + G+ R R+GFV + SA+ A+ ++ D + L + A +A+++
Sbjct: 230 TSHKLMLDEEGRSR-RFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQ 286
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 155 (59.6 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 49/189 (25%), Positives = 91/189 (48%)
Query: 36 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+G KI S Q ++FIG + + + D+ +++ G V+ + DP ++RGF
Sbjct: 16 EGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGE-VLDCTIKTDPLTG-RSRGF 73
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV-KALYVKNLPKD 153
F+ + + AE + + + KLD DP+ A++ + K ++V L D
Sbjct: 74 GFVLFKD---AESVDRVLELTEHKLDGKL-----IDPKRAKAIKGKEPPKKVFVGGLSPD 125
Query: 154 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
IT+++L+E F +G+I + +P ER + FV FA K L+N ++I
Sbjct: 126 ITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN-RYHQIGSGK 184
Query: 214 LDCSLAKPQ 222
+ +A+P+
Sbjct: 185 CEIKVAQPK 193
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 158 (60.7 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 79
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 80 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 139
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 140 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 189
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 160 (61.4 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 54/229 (23%), Positives = 111/229 (48%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGE 62
GYA+V F+ A +A++ +N + G+ ++ +Q A R +FI N+ R
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDN 158
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + ++G+ F+ + A+ + +K++ L D
Sbjct: 159 KSVYDTFSLFG-NILSCKVATDDEG--NSKGYGFVHFETEHSAQTAIEKVNG--MLLSDK 213
Query: 123 APTVSWADPR--NAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR + S +K ++VKN + + Q++L +F+ G+IT V+
Sbjct: 214 KVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDA 273
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV FA++ +A +A++ ++G DC L+ +A +K+
Sbjct: 274 QGKPKG-FGFVAFADQDAAGQAVEKLNDSILEGT--DCKLSVCRAQKKS 319
Score = 124 (48.7 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 43/194 (22%), Positives = 87/194 (44%)
Query: 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 102
+A + L+IG++ + E + + + GP V+SI + +D + + G+A++ +
Sbjct: 51 NATYSMASLYIGDLHPDVSEAMLFEKFSMAGP-VLSIRVCRD-NTSRLSLGYAYVNFQQP 108
Query: 103 ACAEYSRQKMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
A AE + M+ F++ P + W+ R+ + A +++KNL + I + +
Sbjct: 109 ADAERALDTMN---FEVIHGRPMRIMWSQ-RDPAARRAGNGN-IFIKNLDRVIDNKSVYD 163
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
F+ G I + G + YGFVHF SA A++ + + + +P
Sbjct: 164 TFSLFGNILSCKVATDDEGNSKG-YGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQP 222
Query: 222 QADQKTSGGSNSQK 235
+A + G + K
Sbjct: 223 RAQRMKELGESGLK 236
Score = 42 (19.8 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 276 GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQP 312
G G+ + L G+ GY + P Q P QP
Sbjct: 442 GQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQP 478
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 161 (61.7 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 54/192 (28%), Positives = 93/192 (48%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P+ GED++RK K G VIS +V Q+ N +R F F+ + A + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG--VISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVE 287
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQ 156
KM+ L D+ V A ++ SQ LY+KNL +
Sbjct: 288 KMNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDD 345
Query: 157 DRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++LKE+F+ +G +T KV++ P G R +GFV ++ A++AL I + L
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQ--GMSRG-FGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 215 DCSLAKPQADQK 226
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
Score = 153 (58.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 51/228 (22%), Positives = 104/228 (45%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA++ F A +A+E LN L + I+ + K +FI N+ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ ++D
Sbjct: 150 KALFETFSSFGT-ILSCKVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDK 204
Query: 123 APTVSWADPRNA----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R E++ + +YVKNLPK+I +D L++ F G I+ V+ +
Sbjct: 205 QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F +A A++ + VL A+ +++++
Sbjct: 265 SGNSRC-FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS---AAQAKHR-----------L 51
+G +KGY FV F +E A AI++LN + K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+P+ GED++RK K G VIS +V Q+ N +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFG--VISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 112 MSNPKFKLDDNAPTVSWADPRN 133
M+ L D+ V A ++
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKS 308
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 157 (60.3 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 47/168 (27%), Positives = 88/168 (52%)
Query: 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ---NANQ----NRGFAFI 97
+ AK L I +P+N ++++R + IG V S +L++D +A+ + G+ F+
Sbjct: 52 SDAKTNLIINYLPQNMSQEELRSLFSSIGE-VESAKLIRDKMAGMSAHHTLGHSLGYGFV 110
Query: 98 EYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
Y N + AE + ++ +L VS+A P SS + LY+ LPK +TQ
Sbjct: 111 NYVNPSDAERAINTLNG--LRLQSKTIKVSYARP----SSDGIKDANLYISGLPKTMTQK 164
Query: 158 RLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203
++++F +G+I +++++ A G R F+ F +RS A +A+K+
Sbjct: 165 NVEDMFTQYGRIINSRILVDQAS-GLSRG-VAFIRFDKRSEAEEAIKD 210
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 158 (60.7 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 44/193 (22%), Positives = 93/193 (48%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LF+G + ++++ + + G +I ++K+ ++ ++RGF F+ + + +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGD-IIDCVVMKNNESG-RSRGFGFVTFADPTNVNHVL 65
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
Q N LD +PR + +++ LP ++T+ L+ F +GK+
Sbjct: 66 Q---NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKV 122
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
T+VVI + ++ +GF+ F E SS ++ + N ++G+ ++ A+P+ SG
Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSFEEESS-VEHVTNERYINLNGKQVEIKKAEPRDG---SG 178
Query: 230 GSNSQKSALNPTY 242
G NS S + Y
Sbjct: 179 GQNSNNSTVGGAY 191
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 39/162 (24%), Positives = 75/162 (46%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK---CSAAQAK-------HR 50
MK +SG ++G+ FVTF + ++ L G+ I C+ + ++
Sbjct: 39 MKNNESGRSRGFGFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPRTLQKPKKGGGYK 97
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +P N E D+R + G V + ++ D Q ++RGF F+ + + E+
Sbjct: 98 VFLGGLPSNVTETDLRTFFNRYGK-VTEVVIMYD-QEKKKSRGFGFLSFEEESSVEH--- 152
Query: 111 KMSNPKF-KLDDNAPTVSWADPRNA---ESSAASQVKALYVK 148
++N ++ L+ + A+PR+ ++S S V Y K
Sbjct: 153 -VTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGK 193
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 158 (60.7 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 41/154 (26%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR+W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K ++ ++ +F+ G+
Sbjct: 76 QNALHNMKILPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRAMAQTAIK 166
Score = 92 (37.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A A+ + +
Sbjct: 111 FIGMISKKCNENDIRVMFSPFGQ-IEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPIVVKFADTQKDKEQKRIAQ 199
Score = 69 (29.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 402 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 461
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 462 NGFQIGMKRLKVQLKRSKNDSK 483
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 158 (60.7 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 41/154 (26%), Positives = 77/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR+W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K ++ ++ +F+ G+
Sbjct: 76 QNALHNMKILPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRAMAQTAIK 166
Score = 92 (37.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKK--IKCSAAQAK-------HRL 51
+ ++ ++KG FVTF T++ A +A L++ + L G I+ A ++ +L
Sbjct: 51 RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKL 110
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FIG + + E+D+R + G + +++ P + RG AF+ + A A+ + +
Sbjct: 111 FIGMISKKCNENDIRVMFSPFGQ-IEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKA 167
Query: 112 MSNPKFKLDDNAP-TVSWADP-RNAESSAASQ 141
M + ++P V +AD ++ E +Q
Sbjct: 168 MHQAQTMEGCSSPIVVKFADTQKDKEQKRIAQ 199
Score = 69 (29.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
L++ +LP++ L ++F G + + K +GFV + SA A+++
Sbjct: 406 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 465
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
++I + L L + + D K
Sbjct: 466 NGFQIGMKRLKVQLKRSKNDSK 487
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 155 (59.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 53/203 (26%), Positives = 94/203 (46%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G + N +D MR+ ++ G + I +++DP ++RGF F+ + E
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGE-ITDIIVMRDP-TTKRSRGFGFVTFSGKT--EVDA 79
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQV--KALYVKNLPKDITQDRLKELFAHHG 167
P +D A PR+ ++ + S V K LYV + +D T+D L E F +G
Sbjct: 80 AMKQRPHI-IDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 138
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC-------SLAK 220
+TK I K Q+ +GFV F + S + + + + ++G D ++K
Sbjct: 139 TVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ-KSHMVNGHRCDVRKGLSKDEMSK 197
Query: 221 PQA--DQKTSGGSN--SQKSALN 239
Q D++T GG + Q+ N
Sbjct: 198 AQMNRDRETRGGRSRDGQRGGYN 220
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKA 200
++ ++V L + T D ++E ++ G+IT +++ P +RSR +GFV F+ ++ A
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVM-RDPTTKRSRGFGFVTFSGKTEVDAA 80
Query: 201 LKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 235
+K + IDG+ +D A P+ D+ S + S K
Sbjct: 81 MKQ-RPHIIDGKTVDPKRAVPRDDKNRSESNVSTK 114
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 158 (60.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 150
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 151 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 210
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 211 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 260
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 158
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 159 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 218
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 219 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 158
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 159 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 218
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 219 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 156 (60.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 39/173 (22%), Positives = 82/173 (47%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++FIG + D +R +K G + +++DP ++RGF F+ + + A +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGE-IRECMVMRDP-TTKRSRGFGFVTFADAASVD--- 76
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ ++ P +LD A PR A+ ++ K ++V L + + +K+ F GK+
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 136
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
++ K +GFV F E ++ + +EI+ ++++C A+P+
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNKMVECKKAQPK 188
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 187
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 188 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 247
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 248 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 188
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 189 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 248
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 249 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 298
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 192
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 193 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 252
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 253 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 192
Query: 110 QKMSNPKF---KLDDNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P+ + A P + + A +YV ++ +D++ D +K +F
Sbjct: 193 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 252
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI + + YGF+ + + S+ A+ + +++ GQ L
Sbjct: 253 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 48/173 (27%), Positives = 91/173 (52%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------LFIG 54
K + +G+ +GY FV F ++E A AI+ +N +L GK I+ + A A ++ +FIG
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIG 62
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ E + + G + + ++++DP N ++G+AFI + + ++ + + M N
Sbjct: 63 NLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN-SKGYAFINFASFDASDAAIEAM-N 120
Query: 115 PKFKLDDNAP-TVSWADPRNAESSA-ASQVKALYVKNLPKDITQ-DRLKELFA 164
++ N P TVS+A ++++ S + L P ++Q DR +LFA
Sbjct: 121 GQYLC--NRPITVSYAFKKDSKGERHGSAAERLLAAQNP--LSQADRPHQLFA 169
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 151 (58.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 38/153 (24%), Positives = 73/153 (47%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G + + + D++ TK G V+ + DP N ++RGF FI + + A E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGFGFILFKDAASVE--- 55
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + +LD DP+ A + VK ++V L + T+++++E F G+I
Sbjct: 56 KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 110
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
+ +P +R + F+ F E K L+
Sbjct: 111 EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 39/154 (25%), Positives = 78/154 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G +PR+W E ++++ G V I +++D QN Q++G F+ +Y A +
Sbjct: 116 KMFVGQIPRSWSEKELKELFEPYG-AVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEA 174
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E S A + + L++ + K ++ ++ +F+ +G+
Sbjct: 175 QNALHNIKTLTGMHHPIQM--KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYGQ 232
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F+ R+ A A+K
Sbjct: 233 IEECRILRGPDGLSRG-CAFVTFSTRAMAQNAIK 265
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LFIG + E +R G + +V +PQ ++R F F+ Y N E +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGT-LTDCVVVVNPQT-KRSRCFGFVTYSN---VEEAD 67
Query: 110 QKMSNPKFKLDDNAPTVSWADPR--NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ +D N + A R +A A ++VK L+V L D+ + L E F+ G
Sbjct: 68 AAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFG 127
Query: 168 KITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ K +I + G++R +GFV+F +A KA + + I G ++ A P+ D
Sbjct: 128 TVEKAEIIADKQSGKKRG-FGFVYFQNHDAADKAAV-VKFHPIQGHRVEVKKAVPKEDIH 185
Query: 227 TSGGSNSQKSA 237
+ GG +S+
Sbjct: 186 SGGGGGGSRSS 196
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LFIG + E +R G + +V +PQ ++R F F+ Y N E +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGT-LTDCVVVVNPQT-KRSRCFGFVTYSN---VEEAD 62
Query: 110 QKMSNPKFKLDDNAPTVSWADPR--NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ +D N + A R +A A ++VK L+V L D+ + L E F+ G
Sbjct: 63 AAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFG 122
Query: 168 KITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ K +I + G++R +GFV+F +A KA + + I G ++ A P+ D
Sbjct: 123 TVEKAEIIADKQSGKKRG-FGFVYFQNHDAADKAAV-VKFHPIQGHRVEVKKAVPKEDIH 180
Query: 227 TSGGSNSQKSA 237
+ GG +S+
Sbjct: 181 SGGGGGGSRSS 191
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 103 QNALHNMKVLPGMHHPIQM--KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 160
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R V F R+ A A+K
Sbjct: 161 IEECRILWGPDGLSRG-CALVTFTTRAMAQTAIK 193
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LFIG + E +R G + +V +PQ ++R F F+ Y N E +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGT-LTDCVVVVNPQT-KRSRCFGFVTYSN---VEEAD 67
Query: 110 QKMSNPKFKLDDNAPTVSWADPR--NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ +D N + A R +A A ++VK L+V L D+ + L E F+ G
Sbjct: 68 AAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFG 127
Query: 168 KITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ K +I + G++R +GFV+F +A KA + + I G ++ A P+ D
Sbjct: 128 TVEKAEIIADKQSGKKRG-FGFVYFQNHDAADKAAV-VKFHPIQGHRVEVKKAVPKEDIH 185
Query: 227 TSGGSNSQKSA 237
+ GG +S+
Sbjct: 186 SGGGGGGSRSS 196
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/170 (23%), Positives = 86/170 (50%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
R+++G++ GED +R+A GP + SI++ D +++GFAF+EY A+ +
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLAL 144
Query: 110 QKMSNPKF---KLDDNAP-TVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFA 164
++M++ + P ++ A P + + A +YV ++ D++ D +K +F
Sbjct: 145 EQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFE 204
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
GKI ++ + +GF+ + + S++ A+ + +++ GQ L
Sbjct: 205 AFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 39/172 (22%), Positives = 80/172 (46%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG + D +R +K G + +++DP ++RGF F+ + + A + +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGE-IRECMVMRDP-TTKRSRGFGFVTFADPASVD---K 55
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ P +LD A PR A+ ++ K ++V L + + +K+ F GK+
Sbjct: 56 VLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 115
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
++ K +GFV F E ++ + +EI+ ++++C A+P+
Sbjct: 116 DAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNKMVECKKAQPK 166
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 140 (54.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 38/143 (26%), Positives = 69/143 (48%)
Query: 89 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA-ASQVKA 144
N ++G+ F+ + AE + +KM+ L+D V R AE A A +
Sbjct: 103 NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGARAKEFTN 160
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A KA+
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKAVDEM 219
Query: 205 EKYEIDGQVLDCSLAKPQADQKT 227
E++G+ + A+ + +++T
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQT 242
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 101 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 160
Query: 55 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 217
Query: 111 KMS 113
+M+
Sbjct: 218 EMN 220
Score = 111 (44.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 53/209 (25%), Positives = 98/209 (46%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQN 91
K +K + + A+ + F +N+GED D ++ K GP +S++++ D + ++
Sbjct: 142 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKS 198
Query: 92 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---RNAESSAA-SQVKA--- 144
+GF F+ + H A+ + +M N K +L+ V A R E Q+K
Sbjct: 199 KGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 256
Query: 145 -------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
LYVKNL I +RL++ F+ G IT + + G+ + +GFV F+ A
Sbjct: 257 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKG-FGFVCFSSPEEA 314
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQK 226
KA+ + + L +LA+ + +++
Sbjct: 315 TKAVTEMNGRIVATKPLYVALAQRKEERQ 343
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 46
GYA+V F+ A +A++ +N +KGK ++ +Q
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 152 (58.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LFIG + E +R G + +V +PQ ++R F F+ Y N E +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGT-LTDCVVVVNPQT-KRSRCFGFVTYSN---VEEAD 62
Query: 110 QKMSNPKFKLDDNAPTVSWADPR--NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ +D N + A R +A A ++VK L+V L D+ + L E F+ G
Sbjct: 63 AAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFG 122
Query: 168 KITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ K +I + G++R +GFV+F +A KA + + I G ++ A P+ D
Sbjct: 123 TVEKAEIIADKQSGKKRG-FGFVYFQNHDAADKAAV-VKFHPIQGHRVEVKKAVPKEDIY 180
Query: 227 TSGGSNSQKSA 237
+ GG +S+
Sbjct: 181 SGGGGGGSRSS 191
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 157 (60.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 56/234 (23%), Positives = 105/234 (44%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS----AAQAKHR----LFI 53
K SG + Y + F +++ A+ AIE+ N+ L GK I+ A A+ +F+
Sbjct: 57 KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFV 116
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+P + ++ K G ++S ++ ++RG+ F+++ A + Q ++
Sbjct: 117 KNLPESVTNAVLQDMFKKFG-NIVSCKVAT--LEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
+ + D V + + LY+KNL D+++D L+E FA GKI +
Sbjct: 174 STI--VADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 174 IPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
I AK R Y FV+F A +A + + + L A+ +A+++
Sbjct: 232 I--AKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 135 (52.6 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 51/217 (23%), Positives = 101/217 (46%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ N+ + ED +R+ + G ++S+ + KD +N RG+AF+ + N A + +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGK-IVSLAIAKD-EN-RLCRGYAFVNFDNPEDARRAAE 259
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++ KF K + ++ E ++V +YVKN+ +T++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ G IT + + G+ + +GFV F+ A+ A+K G+ L ++
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKG-FGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 219 AKPQADQKTS-----GG-----SNSQKSALNP-TYPP 244
A+ + D+K G +S +++NP TY P
Sbjct: 379 AQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAP 415
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 149 (57.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 49/185 (26%), Positives = 94/185 (50%)
Query: 44 AAQAKHR-LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 102
AAQA R LF+G + + ++ +R ++ G V+ ++KD + NQ+RGF F+++ +
Sbjct: 49 AAQAALRKLFVGGLDWSTTQETLRSYFSQYGE-VVDCVIMKD-KTTNQSRGFGFVKFKDP 106
Query: 103 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
C S P LD PR+ ++S ++++ +V +P + + L+E
Sbjct: 107 NCV--GTVLASRPH-TLDGRNIDPKQKGPRS-DNSKSNKI---FVGGIPHNCGETELREY 159
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F G +T+VV+ Q +GF+ F + S +A+ N ++I G+ ++ A+P+
Sbjct: 160 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 218
Query: 223 ADQKT 227
D K+
Sbjct: 219 -DSKS 222
Score = 119 (46.9 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 40/148 (27%), Positives = 73/148 (49%)
Query: 1 MKGKDSGEAKGYAFVTFRTKE-----LASQAIEELNSCELKGKKIKCSAAQAK-HRLFIG 54
MK K + +++G+ FV F+ LAS+ L+ + K+ + +K +++F+G
Sbjct: 87 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRP-HTLDGRNIDPKQKGPRSDNSKSNKIFVG 145
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P N GE ++R+ K G V + ++ D + + RGF FI + + E S + N
Sbjct: 146 GIPHNCGETELREYFKKFGV-VTEVVMIYDAEK-QRPRGFGFITFED----EQSVDQAVN 199
Query: 115 PKFK-LDDNAPTVSWADPRNAESSAASQ 141
F + V A+PR+++S A Q
Sbjct: 200 MHFHDIMGKKVEVKRAEPRDSKSQAPGQ 227
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 153 (58.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 56/228 (24%), Positives = 109/228 (47%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 66
GY +V FR A A+ +N + GK + +Q RL +GN+ +N +
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDN 119
Query: 67 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+A+ + G ++S ++V D N ++G+A++ + + A A + M+ +L++
Sbjct: 120 RALFYLFSAFG-NILSCKVVCDD---NGSKGYAYVHFDSLAAANRAIWHMNG--VRLNNR 173
Query: 123 APTVS-WADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
V + P + ++ +A ++VKN+ DI ++LKELF +G V +
Sbjct: 174 QVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD 233
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
G+ + +GFV + +A KA+ + IDG+VL A+ + ++
Sbjct: 234 ASGKSKG-FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 152 (58.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LF+G + E ++R K G + SI + DPQ ++RGFAFI + N +
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGE-IESINVKTDPQTG-RSRGFAFIVFTNTEAID--- 111
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
K+S D++ DP+ A++ ++V L +I+ + +K F G I
Sbjct: 112 -KVS----AADEHIINSKKVDPKKAKARHGK----IFVGGLTTEISDEEIKTYFGQFGNI 162
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
+V +P K +R + F+ F LK T K +I G+ +D A P+ + + G
Sbjct: 163 VEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK-TPKQKIAGKEVDVKRATPKPENQMMG 221
Query: 230 G 230
G
Sbjct: 222 G 222
Score = 114 (45.2 bits), Expect = 0.00049, P = 0.00049
Identities = 29/128 (22%), Positives = 62/128 (48%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-RLFIGNVPRNWGEDD 64
+G ++G+AF+ F E A + + + KK+ A+A+H ++F+G + +++
Sbjct: 93 TGRSRGFAFIVFTNTE-AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
++ + G ++ +E+ D Q + Q +GF FI + + + + PK K+
Sbjct: 152 IKTYFGQFG-NIVEVEMPFDKQKS-QRKGFCFITFDSE---QVVTDLLKTPKQKIAGKEV 206
Query: 125 TVSWADPR 132
V A P+
Sbjct: 207 DVKRATPK 214
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 152 (58.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 72/298 (24%), Positives = 127/298 (42%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY-- 107
+LF+G + + ++ +R ++ G V+ ++KD + NQ+RGF F+++ + C
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGE-VVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVL 68
Query: 108 -SRQ-----KMSNPK------FKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKD 153
SR + +PK + + + P W +PR E+S ++++ +V +P +
Sbjct: 69 ASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRT-ENSRSNKI---FVGGIPHN 124
Query: 154 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
+ LKE F G +T+VV+ Q +GF+ F + S +A+ N ++I G+
Sbjct: 125 CGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKK 183
Query: 214 LDCSLAKPQ-ADQKTSG--GSNS------QKSALNPTYPPHXXXXXXXXXXXXXXXXXXX 264
++ A+P+ + +T G GSN Q +A T P
Sbjct: 184 VEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTI 243
Query: 265 XXFAQPMVYGRGAAPGGMAMLPMLL---------PDG-RIGYVLQQPGVQQHNPPPQP 312
+ QP GRG P + P L+ P G GY P + PPP P
Sbjct: 244 GGYGQPA--GRGGPPPPPSFAPFLVSTTPGPFPPPQGFPPGYATPPPFGYGYGPPPPP 299
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 132 (51.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 136 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 195
+ ++ LYV + D+T D L+ F G I V++P Q+ +GF+ F
Sbjct: 8 TKGVNKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPE 67
Query: 196 SAMKALKNTEKYEIDGQVLDCSLAKP 221
A AL N + EI G+V+ CS+AKP
Sbjct: 68 DAADALDNMHESEIFGRVIKCSIAKP 93
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 154 (59.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 58/228 (25%), Positives = 107/228 (46%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMR 66
GYA+V F E +A++ELN +KG+ + +Q + ++ GNV +N
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 67 KAV--TKIGPG-VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
KA+ T G ++S ++ D + N +G+ F+ + + A + + ++ L+D
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNA-KGYGFVHFDSVESANAAIEHVNG--MLLNDKK 237
Query: 124 PTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V R S +KA +Y+KNL +IT+ +LF G+IT + + K
Sbjct: 238 VYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKD 295
Query: 180 GQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
++ R +GFV++A A KA+ E G+ L A+ + +++
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHERE 343
Score = 141 (54.7 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 38 KKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 96
++ K A +A ++I N+ E + + G + S+ LVKD QN ++ RGF F
Sbjct: 249 RQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGF 305
Query: 97 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA-------- 144
+ Y NH CA+ + ++++ ++K V A ++ Q+K
Sbjct: 306 VNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQG 363
Query: 145 --LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
L++KNL ++ +RLK F+ G IT I + G+ + +GFV + A KA+
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVT 422
Query: 203 NTEKYEIDGQVLDCSLAK 220
+ + G+ L +LA+
Sbjct: 423 EMNQRMLAGKPLYVALAQ 440
Score = 139 (54.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 41/126 (32%), Positives = 64/126 (50%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G AKGY FV F + E A+ AIE +N L KK+ K A +A ++
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVY 264
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ E + + G + S+ LVKD QN ++ RGF F+ Y NH CA+ + ++
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDEL 321
Query: 113 SNPKFK 118
++ ++K
Sbjct: 322 NDKEYK 327
Score = 42 (19.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 270 PMVYGRGAAPGGMAM----LPMLLPDGRIGYVLQQPGVQQHNPPPQP 312
P++YG G P A+ +PM+ P G G + PG+ P P
Sbjct: 481 PLIYGPGGYPIPAAVNGRGMPMV-P-GHNGPMPMYPGMPTQFPAGGP 525
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 150 (57.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 45/171 (26%), Positives = 82/171 (47%)
Query: 42 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 101
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 102 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRSMTQKDVED 124
Query: 162 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
+F+ G+I V+ G R F+ F +RS A +A+ N ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITNFNGHKPPG 174
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 40/145 (27%), Positives = 67/145 (46%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------LFIG 54
++ K +G + GY FV + T + A +AI LN L+ K IK S A+ L+I
Sbjct: 52 IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 111
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+PR+ + D+ ++ G +I+ ++ D Q +RG AFI + + AE + +
Sbjct: 112 GLPRSMTQKDVEDMFSRFGR-IINSRVLVD-QTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA 139
K TV +A N + A
Sbjct: 170 HKPPGSSEPITVKFAANPNQNKNVA 194
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 139 (54.0 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 37/142 (26%), Positives = 71/142 (50%)
Query: 89 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA-ASQVKA 144
N ++G+AF+ + A+ + +KM+ L+D V R AE A A +
Sbjct: 48 NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 105
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+KN +++ + LKELF+ GK V + G+ + +GFV + + A KA++
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG-FGFVSYEKHEDANKAVEEM 164
Query: 205 EKYEIDGQVLDCSLAKPQADQK 226
EI G+++ A+ + +++
Sbjct: 165 NGKEISGKIIFVGRAQKKVERQ 186
Score = 132 (51.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 38/123 (30%), Positives = 68/123 (55%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ K A+ AK + F
Sbjct: 46 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 105
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVE 162
Query: 111 KMS 113
+M+
Sbjct: 163 EMN 165
WARNING: HSPs involving 483 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 342 295 0.00092 115 3 11 23 0.44 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 733
No. of states in DFA: 604 (64 KB)
Total size of DFA: 210 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.69u 0.10s 25.79t Elapsed: 00:00:01
Total cpu time: 25.75u 0.10s 25.85t Elapsed: 00:00:01
Start: Sat May 11 09:57:49 2013 End: Sat May 11 09:57:50 2013
WARNINGS ISSUED: 2