BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019327
(342 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/342 (77%), Positives = 304/342 (88%), Gaps = 2/342 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGK S + KGYAFVTFR+KELAS+AIE+LN+ E KG+KIKCS +QA HRLF+GNVPR+W
Sbjct: 142 MKGKASSDTKGYAFVTFRSKELASKAIEQLNNTEFKGRKIKCSTSQANHRLFLGNVPRDW 201
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E DM + V KIGPGVIS+EL+KDPQN+++NRGFAFIEYYNHACA+YSR+KMSNP+FKLD
Sbjct: 202 EEKDMMQVVMKIGPGVISVELLKDPQNSSRNRGFAFIEYYNHACADYSRKKMSNPQFKLD 261
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAPTVSWADP+NA SSAASQVKA+YVKNLP DITQDRL++LF HGK+TKVV+PPAK G
Sbjct: 262 DNAPTVSWADPKNAGSSAASQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAG 321
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
ERSR+ FVHFAERSSAMKALKNTEKYEIDGQVL+CSLAKPQADQK+SGGSN QKS L+P
Sbjct: 322 HERSRFAFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSSGGSNLQKSVLHP 381
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
T+PP LGYG+VGG YGALGAGY A FAQPM+YGRG P G++M+PMLLPDGRIGYV+QQ
Sbjct: 382 TFPPRLGYGLVGGTYGALGAGY-GASFAQPMIYGRGPTPAGISMMPMLLPDGRIGYVMQQ 440
Query: 301 PGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
PG+Q PP QPR+GRGG+ SSSGGRRS +N RGR RYNPY
Sbjct: 441 PGMQPQTPPSQPRAGRGGSAGSSSGGRRSNENNRGR-RYNPY 481
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +P D ++ L+ G++T+V I K + Y FV F + A KA++
Sbjct: 112 VYLGGIPIDASEQDLRHFCESIGEVTEVRIMKGKASSDTKGYAFVTFRSKELASKAIEQL 171
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS ++
Sbjct: 172 NNTEFKGRKIKCSTSQ 187
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/313 (76%), Positives = 280/313 (89%), Gaps = 1/313 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ K+S E KG+AFVTFR+ ELAS+AI+ELN+ E KGKKIKCS++QAKHRLFIGNVPR+W
Sbjct: 427 MRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSW 486
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+D++K VT+IGPGV ++ELVKD +N + NRGFAFI+YYNHACAEYSRQKM NPKFKLD
Sbjct: 487 GEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLD 546
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAPTVSWADP+NA+SSAASQVKA+YVKNLPK++TQ++LK+LF HHGKITKVV+PPAK G
Sbjct: 547 DNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSG 606
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHF+ERSSAMKALKNTEKYE+DGQVL+CSLAKPQADQK SGGSNSQKS L P
Sbjct: 607 QEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQK-SGGSNSQKSGLLP 665
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
YPP +GYG VGGAYGA+ AGY +GF QP++YGRG P GMAM+PMLLPDGRIGYVLQQ
Sbjct: 666 NYPPRVGYGFVGGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQ 725
Query: 301 PGVQQHNPPPQPR 313
PG Q PPP PR
Sbjct: 726 PGSQMLTPPPHPR 738
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G +P++ EDD+R+ IG V + +++ + +N+N+GFAF+ + + A +
Sbjct: 397 VYVGGIPQDSSEDDLRRFCESIGE-VTEVRVMRS-KESNENKGFAFVTFRSVELASKAID 454
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N +FK + + S++ L++ N+P+ ++ LK++ G +
Sbjct: 455 ELNNTEFK------------GKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVTEIGPGV 502
Query: 170 TKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
T V ++ K + F+ + + A + + K+++D S A P+
Sbjct: 503 TAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPK 558
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/313 (76%), Positives = 280/313 (89%), Gaps = 1/313 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ K+S E KG+AFVTFR+ ELAS+AI+ELN+ E KGKKIKCS++QAKHRLFIGNVPR+W
Sbjct: 471 MRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSW 530
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+D++K VT+IGPGV ++ELVKD +N + NRGFAFI+YYNHACAEYSRQKM NPKFKLD
Sbjct: 531 GEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLD 590
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAPTVSWADP+NA+SSAASQVKA+YVKNLPK++TQ++LK+LF HHGKITKVV+PPAK G
Sbjct: 591 DNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSG 650
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHF+ERSSAMKALKNTEKYE+DGQVL+CSLAKPQADQK SGGSNSQKS L P
Sbjct: 651 QEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQK-SGGSNSQKSGLLP 709
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
YPP +GYG VGGAYGA+ AGY +GF QP++YGRG P GMAM+PMLLPDGRIGYVLQQ
Sbjct: 710 NYPPRVGYGFVGGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQ 769
Query: 301 PGVQQHNPPPQPR 313
PG Q PPP PR
Sbjct: 770 PGSQMLTPPPHPR 782
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G +P++ EDD+R+ IG V + +++ + +N+N+GFAF+ + + A +
Sbjct: 441 VYVGGIPQDSSEDDLRRFCESIGE-VTEVRVMRS-KESNENKGFAFVTFRSVELASKAID 498
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N +FK + + S++ L++ N+P+ ++ LK++ G +
Sbjct: 499 ELNNTEFK------------GKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVTEIGPGV 546
Query: 170 TKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
T V ++ K + F+ + + A + + K+++D S A P+
Sbjct: 547 TAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPK 602
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/312 (78%), Positives = 285/312 (91%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS E+KGYAFVTFRTKELAS+AIEELN+ E KGKK+KCS +QA HRLFIGNVPRNW
Sbjct: 100 MKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNW 159
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+DM+KAV K GPGV S+EL+KDPQN ++NRGFAFIEYYNHACAEYSR+ MS+P+FKLD
Sbjct: 160 GEEDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKMMSSPEFKLD 219
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAPTVSWADP+NA SSAASQVKA+YVKNLP+DI QDRL++LF HHGK+TKVV+PPAKPG
Sbjct: 220 DNAPTVSWADPKNAGSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVLPPAKPG 279
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
E+SR+GFVHFAERSSAMKALKNTEKY+IDGQVLDCSLAKPQAD K+SGG NSQKS+ +
Sbjct: 280 HEKSRFGFVHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLKSSGGPNSQKSSPHS 339
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
++PP +GY +VG +YGALGAG+ AGFAQP++YGRG P GM+M+PMLLPDGRIGYVLQQ
Sbjct: 340 SFPPRVGYSLVGSSYGALGAGFGAAGFAQPVIYGRGPTPAGMSMMPMLLPDGRIGYVLQQ 399
Query: 301 PGVQQHNPPPQP 312
PG+Q H+PPPQP
Sbjct: 400 PGMQMHSPPPQP 411
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 88/178 (49%), Gaps = 20/178 (11%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+++G +P + E+D+++ IG V I ++K +++++++G+AF+ + A +
Sbjct: 69 EVYLGGIPPDASEEDLKEFCESIG-EVTEIRIMKG-KDSSESKGYAFVTFRTKELASKAI 126
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-- 167
++++N +FK + S A+ R L++ N+P++ ++ +K+ G
Sbjct: 127 EELNNTEFKGKKVKCSTSQANHR------------LFIGNVPRNWGEEDMKKAVKKTGPG 174
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSA--MKALKNTEKYEIDGQVLDCSLAKPQ 222
+++ P P + R + F+ + + A + + ++ ++++D S A P+
Sbjct: 175 VNSVELLKDPQNPSRNRG-FAFIEYYNHACAEYSRKMMSSPEFKLDDNAPTVSWADPK 231
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 122 NAPTVSWADPRNAESSAASQVKAL-------YVKNLPKDITQDRLKELFAHHGKITKVVI 174
++P S D E S++ AL Y+ +P D +++ LKE G++T++ I
Sbjct: 40 DSPKGSDGDEEEDEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFCESIGEVTEIRI 99
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
K E Y FV F + A KA++ E G+ + CS ++
Sbjct: 100 MKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQ 145
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/349 (75%), Positives = 297/349 (85%), Gaps = 8/349 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDSGE KG+AFVTFR ELAS+AIEELN+ E KG+KIKCS +QAKHRLFIGNVPR+W
Sbjct: 87 MKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSW 146
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+D++K VT+IGPGV ++ELVKD +N++ NRGFAFI+YYNHACAEYSRQKM NPKFKLD
Sbjct: 147 GEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLD 206
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NAPTVSWADP+NA+SS ASQVKA+YVKNLPK+ITQD+LK+LF HHGKITKVV+PPAK G
Sbjct: 207 NNAPTVSWADPKNADSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSG 266
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE+SR GFVHFAERSSAMKALKNTEKYEIDGQVL+CSLAKPQADQK+ GGSNSQKS L
Sbjct: 267 QEKSRIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLS 326
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
+YPP +GYG VGGAYGALGAGY AGFAQP++YGRG P GMAM+PMLLPDGRIGYVLQQ
Sbjct: 327 SYPPRVGYGFVGGAYGALGAGYGTAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQ 386
Query: 301 PGVQQHNPPPQ-------PRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
PG Q H PP +G SSS GR + D G GR RY+PY
Sbjct: 387 PGAQPHTPPSHQRSSGRGGSGSGSKSGGSSSRGRHNNDGGHGR-RYHPY 434
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+YV + +D +++ LK G++T+V I K E + FV F A KA++
Sbjct: 57 VYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEEL 116
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS ++
Sbjct: 117 NNTEFKGRKIKCSTSQ 132
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/349 (75%), Positives = 297/349 (85%), Gaps = 8/349 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDSGE KG+AFVTFR ELAS+AIEELN+ E KG+KIKCS +QAKHRLFIGNVPR+W
Sbjct: 156 MKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSW 215
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+D++K VT+IGPGV ++ELVKD +N++ NRGFAFI+YYNHACAEYSRQKM NPKFKLD
Sbjct: 216 GEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLD 275
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NAPTVSWADP+NA+SS ASQVKA+YVKNLPK+ITQD+LK+LF HHGKITKVV+PPAK G
Sbjct: 276 NNAPTVSWADPKNADSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSG 335
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE+SR GFVHFAERSSAMKALKNTEKYEIDGQVL+CSLAKPQADQK+ GGSNSQKS L
Sbjct: 336 QEKSRIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLS 395
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
+YPP +GYG VGGAYGALGAGY AGFAQP++YGRG P GMAM+PMLLPDGRIGYVLQQ
Sbjct: 396 SYPPRVGYGFVGGAYGALGAGYGTAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQ 455
Query: 301 PGVQQHNPPPQ-------PRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
PG Q H PP +G SSS GR + D G GR RY+PY
Sbjct: 456 PGAQPHTPPSHQRSSGRGGSGSGSKSGGSSSRGRHNNDGGHGR-RYHPY 503
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+YV + +D +++ LK G++T+V I K E + FV F A KA++
Sbjct: 126 VYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEEL 185
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS ++
Sbjct: 186 NNTEFKGRKIKCSTSQ 201
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/351 (67%), Positives = 291/351 (82%), Gaps = 11/351 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ KDS E +G+AFVTFR+ +LAS AI ELN+ E KGKKIKCS +QAKHRLF+ N+PR+W
Sbjct: 141 MREKDSSENRGFAFVTFRSVDLASTAIGELNNTEFKGKKIKCSTSQAKHRLFLSNIPRSW 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GED +RK V ++GPGV +++LVK+ ++N NRG+AFIEYYN+ACAEYSRQKM +PKFKL
Sbjct: 201 GEDGLRKIVAEVGPGVTNVQLVKEKSSSN-NRGYAFIEYYNNACAEYSRQKMMDPKFKLG 259
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAP VSWADP+NA+SSA+SQVKALYVKNLPK +TQD+LK+LF HGKITKVV+PPAK G
Sbjct: 260 DNAPAVSWADPKNADSSASSQVKALYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSG 319
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHFAERSSAMKALK+TEKYE+DGQ+++C+LAKPQ++QK +GGSN Q + L P
Sbjct: 320 QEKNRIGFVHFAERSSAMKALKDTEKYELDGQLVECALAKPQSEQKAAGGSNLQNTGLLP 379
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFA-QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQ 299
YPP +GYGM+G AYGALGAGYV AGFA QP++YG G +P GMAM+PMLLPDG+ GYVLQ
Sbjct: 380 GYPPGVGYGMMGNAYGALGAGYVTAGFAQQPLIYGSGPSPAGMAMMPMLLPDGQFGYVLQ 439
Query: 300 QPGVQQHNPPP----QPRSGRGGAGS----SSSGGRRSTDNGRGRSRYNPY 342
QPGVQ H+P RSG GG G+ SS+ GR S D+G G+ R+ PY
Sbjct: 440 QPGVQLHSPTSYQRNDSRSGSGGRGNKMGGSSNRGRHSNDSGHGQ-RFRPY 489
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++IG +P + E+D+R +G V + ++++ +++++NRGFAF+ + + A +
Sbjct: 110 EVYIGGIPNDASEEDLRDFCESVGE-VTEVRIMRE-KDSSENRGFAFVTFRSVDLASTAI 167
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+++N +FK + S A R L++ N+P+ +D L+++ A G
Sbjct: 168 GELNNTEFKGKKIKCSTSQAKHR------------LFLSNIPRSWGEDGLRKIVAEVGPG 215
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSA 197
+T V + K Y F+ + + A
Sbjct: 216 VTNVQLVKEKSSSNNRGYAFIEYYNNACA 244
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +P D +++ L++ G++T+V I K E + FV F A A+
Sbjct: 111 VYIGGIPNDASEEDLRDFCESVGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGEL 170
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS ++
Sbjct: 171 NNTEFKGKKIKCSTSQ 186
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/342 (73%), Positives = 288/342 (84%), Gaps = 4/342 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+KGKDS E KGYAFVTFRTKELAS+A+EELN+ E+KG+KIKCSA+Q KHRLFI NVPR W
Sbjct: 124 LKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTW 183
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E+DM+K VT+IGPGV ++L KDPQN+++NRGFAFIEYYNHACAEYSR+KMSNPKFKLD
Sbjct: 184 EEEDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLD 243
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NA TVSWADP+N ESSAASQVKA+Y+KNLPK +TQD+L+ELF HGKITKVVIPPAK G
Sbjct: 244 NNASTVSWADPKNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAG 303
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE R+GFVHFAERSSAMKALKNTEKYEIDG +L CSLAKPQAD+K SGGSNSQKSAL P
Sbjct: 304 QENCRFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLP 363
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
+YPP +GYG++GGA GA AGF QP+ YGRG G AM+PMLLPDGRIGYVLQQ
Sbjct: 364 SYPPWVGYGLLGGAPGAGYGA---AGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQ 420
Query: 301 PGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
PG+Q + PP QPRS G S+SGGR S D G GR YNPY
Sbjct: 421 PGMQPYTPPSQPRSD-RSGGGSTSGGRHSGDRGYGRRWYNPY 461
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G +P N E+D+R +G V + ++K +A + +G+AF+ + A + +
Sbjct: 94 VYLGGIPNNASEEDLRGFCEPVGE-VTEVRILKGKDSA-ETKGYAFVTFRTKELASKAME 151
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + K R + SA+ L++ N+P+ ++ +K++ G
Sbjct: 152 ELNNAEIK------------GRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIGPGV 199
Query: 171 KVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
+V P Q SR + F+ + + A + K K+++D S A P+
Sbjct: 200 NLVDLWKDP-QNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADPK 255
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 288/349 (82%), Gaps = 8/349 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS + KG+AFVTFR+ +LA++AI ELN+ E KGK+IKCS +QAKHRLF+ N+PR+W
Sbjct: 72 MKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCSTSQAKHRLFLSNIPRSW 131
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+D+ K V ++GPG +++LVK ++++ NRG+AF+EYYN+ACAEYSRQKM +PKFKL
Sbjct: 132 GEEDLSKFVAEVGPGTTNVQLVKVSESSSNNRGYAFVEYYNNACAEYSRQKMIDPKFKLG 191
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAP+VSWADP+NA+SS +SQVKA+YVKNLPK +TQD+LK+LF HGKITKVV+PPAK G
Sbjct: 192 DNAPSVSWADPKNADSSTSSQVKAIYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSG 251
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHFAERSSAMKALK+TEKYE++GQ ++C+LAKPQ++QK +GGSN Q++ L P
Sbjct: 252 QEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSEQKPAGGSNLQRAGLLP 311
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
YPP +GYGM+G AYGALGAGYV GF QP++YG G AP GMAM+PMLLPDG+ GYVLQQ
Sbjct: 312 AYPPGVGYGMMGSAYGALGAGYVATGFTQPLIYGSGPAPAGMAMMPMLLPDGQFGYVLQQ 371
Query: 301 PGVQQHNPPPQPRS-GRGGAG------SSSSGGRRSTDNGRGRSRYNPY 342
PGVQ H+P R+ R G+G SSS GR+ +D GR R+ PY
Sbjct: 372 PGVQLHSPTSYQRNDSRSGSGRGNKMVGSSSRGRQRSDASHGR-RFRPY 419
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 19/183 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++IG VP + E+D++ +G V + ++K ++++ N+GFAF+ + + A +
Sbjct: 42 VYIGGVPNDASEEDLKDFCESVGE-VTEVRMMKG-KDSSDNKGFAFVTFRSVDLATKAIG 99
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N +FK + S A R L++ N+P+ ++ L + A G
Sbjct: 100 ELNNTEFKGKRIKCSTSQAKHR------------LFLSNIPRSWGEEDLSKFVAEVGPGT 147
Query: 170 TKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQ-ADQ 225
T V + +R Y FV + + A + + K+++ S A P+ AD
Sbjct: 148 TNVQLVKVSESSSNNRGYAFVEYYNNACAEYSRQKMIDPKFKLGDNAPSVSWADPKNADS 207
Query: 226 KTS 228
TS
Sbjct: 208 STS 210
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/342 (73%), Positives = 288/342 (84%), Gaps = 4/342 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+KGKDS E KGYAFVTFRTKELAS+A+EELN+ E+KG+KIKCSA+Q KHRLFI NVPR W
Sbjct: 153 LKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTW 212
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E+DM+K VT+IGPGV ++L KDPQN+++NRGFAFIEYYNHACAEYSR+KMSNPKFKLD
Sbjct: 213 EEEDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLD 272
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NA TVSWADP+N ESSAASQVKA+Y+KNLPK +TQD+L+ELF HGKITKVVIPPAK G
Sbjct: 273 NNASTVSWADPKNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAG 332
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE R+GFVHFAERSSAMKALKNTEKYEIDG +L CSLAKPQAD+K SGGSNSQKSAL P
Sbjct: 333 QENCRFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLP 392
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
+YPP +GYG++GGA GA AGF QP+ YGRG G AM+PMLLPDGRIGYVLQQ
Sbjct: 393 SYPPWVGYGLLGGAPGAGYGA---AGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQ 449
Query: 301 PGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
PG+Q + PP QPRS G S+SGGR S D G GR YNPY
Sbjct: 450 PGMQPYTPPSQPRS-DRSGGGSTSGGRHSGDRGYGRRWYNPY 490
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G +P N E+D+R +G V + ++K +A + +G+AF+ + A + +
Sbjct: 123 VYLGGIPNNASEEDLRGFCEPVG-EVTEVRILKGKDSA-ETKGYAFVTFRTKELASKAME 180
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + K R + SA+ L++ N+P+ ++ +K++ G
Sbjct: 181 ELNNAEIK------------GRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIGPGV 228
Query: 171 KVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
+V P Q SR + F+ + + A + K K+++D S A P+
Sbjct: 229 NLVDLWKDP-QNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADPK 284
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/352 (69%), Positives = 284/352 (80%), Gaps = 12/352 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS E KG+ FVTF + ELAS+AIEELN+ E GKKIKCS +QAKHRLFIGNVPR+W
Sbjct: 160 MKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSW 219
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
G +D++K VT+IGPGV +ELVKD +N N NRGFAFI+YYNHACAEYSRQKM +P FKL
Sbjct: 220 GVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLG 279
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NAPTVSWADP+NAESSAASQVKA+YVKNLPK++TQ++LK+LF HGKITKVV+PPAK G
Sbjct: 280 ENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSG 339
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK--SAL 238
QE++R GFVHFAERS+AMKALKNTE+YE++GQ+L+CSLAKPQADQK SGGSN+QK L
Sbjct: 340 QEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQK-SGGSNTQKPGPGL 398
Query: 239 NPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVL 298
P+YPPH+GYG+VGGAYGALGAGY G AQP++YG G P GMAM+PMLL DGRIGYVL
Sbjct: 399 LPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVL 458
Query: 299 QQPGVQQHNPP--------PQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
QQPG+Q PP SSS GR + D G GR RY PY
Sbjct: 459 QQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGR-RYRPY 509
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/307 (75%), Positives = 264/307 (85%), Gaps = 9/307 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS E+KGYAFV+FRTKELAS+AIEELN+ E KGKK+KCS +QA HRLFIGNVPRNW
Sbjct: 121 MKGKDSSESKGYAFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNW 180
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE++M+KAV KIGPGV S+EL+KDPQN ++NRGFAFIEYYNHACAEYSR+KMSNP+FKLD
Sbjct: 181 GEENMKKAVKKIGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLD 240
Query: 121 DNAPTVSWADPRNAESSAASQ----VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
DNAPTVSWADP+NA SSAASQ VKA+YVKNLP+DITQD L++LF HHGK+TKVV+PP
Sbjct: 241 DNAPTVSWADPKNAGSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPP 300
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
AKPG E+SR+GFVHFAERSSAMKALKNTEKYEIDG VLDCSLAKP DQK SGG NSQ S
Sbjct: 301 AKPGHEKSRFGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPSGGPNSQNS 360
Query: 237 ALNPTYPPHLGYGM-----VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPD 291
+L +PP LGYG+ G G GAG+ AGF QP++YGRG P GMAM+PMLLPD
Sbjct: 361 SLYSNFPPQLGYGLAGGTYGGFGAGFGGAGFGAAGFTQPVIYGRGPTPAGMAMMPMLLPD 420
Query: 292 GRIGYVL 298
GRIGYVL
Sbjct: 421 GRIGYVL 427
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +P D ++ LKE G++T+V I K E Y FV F + A KA++
Sbjct: 91 VYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGYAFVSFRTKELASKAIEEL 150
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS ++
Sbjct: 151 NNTEFKGKKVKCSTSQ 166
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 251/352 (71%), Positives = 290/352 (82%), Gaps = 12/352 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS E KG+ FVTFR+ ELAS+AIEELN+ E GKKIKCS +QAKHRLFIGNVPR+W
Sbjct: 156 MKGKDSSENKGFGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSW 215
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
G +D++K VT+IGPGV +ELVKD +N N NRGFAFI+YYNHACAEYSRQKM +P FKL
Sbjct: 216 GVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLG 275
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NAPTVSWADP+NAESSAASQVKA+YVKNLPK++TQ++LK+LF HGKITKVV+PPAK G
Sbjct: 276 ENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSG 335
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK--SAL 238
QE++R GFVHFAERS+AMKALKNTE+YE++GQ+L CSLAKPQADQK SGGSN+QK L
Sbjct: 336 QEKNRIGFVHFAERSNAMKALKNTERYELEGQLLQCSLAKPQADQK-SGGSNTQKPGPGL 394
Query: 239 NPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVL 298
P+YPPH+GYG+VGGAYG LGAGY G AQPM+YG G P GMA++PMLL DGRIGYVL
Sbjct: 395 LPSYPPHVGYGLVGGAYGGLGAGYAAPGLAQPMLYGGGQTPSGMAIMPMLLADGRIGYVL 454
Query: 299 QQPGVQQHNPPPQPRSGRGGAGS--------SSSGGRRSTDNGRGRSRYNPY 342
QQPG+Q PP R GRGG GS SSS GR + D G GR RY PY
Sbjct: 455 QQPGMQPQAPPSHHRGGRGGGGSGSGNRNVGSSSKGRHNNDGGHGR-RYRPY 505
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 291/349 (83%), Gaps = 11/349 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGK EAKGYAFVTF+TKELAS+A++ELN+ E KG+KIKCS +Q KHRLFIG+VP+ W
Sbjct: 133 MKGK---EAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEW 189
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DM+K V K+GPGVIS+EL+KDPQ++++NRGFAFIEY+NHACAEYSRQKMSN FKLD
Sbjct: 190 TVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLD 249
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+N VSWADPRN+ESS++SQVKA+YVKNLP++ITQ+RLKELF HHGKITKV +PPAK G
Sbjct: 250 NNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAG 309
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE+SRYGFVHFA+RSSAMKALKNTEKYEI+GQ L+CSLAKPQADQK+SG SNS SA+ P
Sbjct: 310 QEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLP 369
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
YPP LGYGMVGG YGA+GAGY AGFA P++YG GA P GM M+PMLLPDGRI YVLQQ
Sbjct: 370 AYPPPLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQ 429
Query: 301 PGV-----QQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGR--SRYNPY 342
PG+ QQH P P R +G SSSG +RS DN R R RYNPY
Sbjct: 430 PGLQQPSFQQHAPSPVSRH-GRSSGVSSSGEKRSNDNSRNRGHCRYNPY 477
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/352 (67%), Positives = 278/352 (78%), Gaps = 20/352 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS E KG+ FVTF + ELAS+AIEELN+ E GKKIKCS +QAKHRLFIGNVPR+W
Sbjct: 160 MKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSW 219
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
G +D++K VT+IGPG D +N N NRGFAFI+YYNHACAEYSRQKM +P FKL
Sbjct: 220 GVEDLKKIVTEIGPG--------DMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLG 271
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+NAPTVSWADP+NAESSAASQVKA+YVKNLPK++TQ++LK+LF HGKITKVV+PPAK G
Sbjct: 272 ENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSG 331
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK--SAL 238
QE++R GFVHFAERS+AMKALKNTE+YE++GQ+L+CSLAKPQADQK SGGSN+QK L
Sbjct: 332 QEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQK-SGGSNTQKPGPGL 390
Query: 239 NPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVL 298
P+YPPH+GYG+VGGAYGALGAGY G AQP++YG G P GMAM+PMLL DGRIGYVL
Sbjct: 391 LPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVL 450
Query: 299 QQPGVQQHNPP--------PQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
QQPG+Q PP SSS GR + D G GR RY PY
Sbjct: 451 QQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGR-RYRPY 501
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/349 (66%), Positives = 279/349 (79%), Gaps = 8/349 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ KDSG+ KGYAFVTFR+K+LA++AI+ LN+ + +GK+IKCS QAKHRLF+GNVPRNW
Sbjct: 124 MREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNW 183
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E D++KA +IGPGV +EL K+PQN +NRGFAFIEYYNHACAEYS+QKMSNP FKLD
Sbjct: 184 MESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLD 243
Query: 121 DNAPTVSWAD--PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
DNAPTVSWA+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAK
Sbjct: 244 DNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAK 303
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKS 236
PG+E SRYGFVH+AER+S M+ALKNTE+YEIDG +LDC+LAKPQADQKT+ + N QKS
Sbjct: 304 PGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKS 363
Query: 237 ALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
L P YPP L YGM +GALG G+ + ++QP+++ G A GGM+M+P++LPDGRIGY
Sbjct: 364 QLQPNYPPLLSYGMAPSPFGALG-GFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGY 422
Query: 297 VLQQPGV---QQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
VLQQPG+ Q P P G SSSSG +RS+DNGRGRSRYNPY
Sbjct: 423 VLQQPGLAAMPQPPPRHSPPYRGGSGSSSSSGSKRSSDNGRGRSRYNPY 471
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/349 (66%), Positives = 277/349 (79%), Gaps = 8/349 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ K+SG+ KGYAFVTFR K+LAS+AI+ LNS E +GK+IKCS QAKHRLF+GNVPRNW
Sbjct: 123 MREKESGDGKGYAFVTFRNKDLASKAIDTLNSTEFRGKRIKCSTTQAKHRLFLGNVPRNW 182
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E D++KA +IGPGV +EL K+PQN +NRGFAFIEY+NHACAEYS+QKMSNP FKLD
Sbjct: 183 TESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPSFKLD 242
Query: 121 DNAPTVSWAD--PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
DNAPTVSWA+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAK
Sbjct: 243 DNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAK 302
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKS 236
PG+E SRYGFVH+AER+S M+ALKNTE+YEIDG +LDC+LAKPQADQK + + N QKS
Sbjct: 303 PGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKANANTVQNVQKS 362
Query: 237 ALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
L P YPP L YGM +GALG G+ + ++QP+++ G A GGM+M+P++LPDGRIGY
Sbjct: 363 QLQPNYPPLLSYGMAPSPFGALG-GFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGY 421
Query: 297 VLQQPGV---QQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
VLQQPG+ Q P P P G SSSS +RS+DNGRGRSRYNPY
Sbjct: 422 VLQQPGLAAMPQPPPRPSPPYRGGSGSSSSSSSKRSSDNGRGRSRYNPY 470
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +P D T+ LK G++T+V I K + Y FV F + A KA+
Sbjct: 93 VYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASKAIDTL 152
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS +
Sbjct: 153 NSTEFRGKRIKCSTTQ 168
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/314 (71%), Positives = 272/314 (86%), Gaps = 3/314 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKDS E K +AFVTFR+ +LAS+AI+ELN+ E KGK+IKCS AQAK+RLF+GN+PR+W
Sbjct: 145 MKGKDSNENKRFAFVTFRSVDLASKAIDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSW 204
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E+D+RK V ++GPGV +++LVKD + +N N+GFAFI+YYN ACAEYSRQKM NP FKL
Sbjct: 205 KEEDLRKVVAEVGPGVTAVQLVKDMKTSN-NKGFAFIDYYNTACAEYSRQKMVNPDFKLG 263
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DNAPTVSWA+P+NA+SSA+SQVKA+YVKNLPK++TQD+LK+LF HHGKITKVV+PPAKPG
Sbjct: 264 DNAPTVSWAEPKNADSSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPG 323
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHFAERSSAMKALKNTE+YE+DGQV++CSLAKPQADQK+ G SN Q L P
Sbjct: 324 QEKNRIGFVHFAERSSAMKALKNTERYELDGQVVECSLAKPQADQKSVGVSNLQNPGLLP 383
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
+YPP GYG++GGA+GALGAGY AQP++YGRG P GMAM+PMLLPDGRIGYVLQQ
Sbjct: 384 SYPPGGGYGLIGGAFGALGAGY--GAVAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQ 441
Query: 301 PGVQQHNPPPQPRS 314
PGVQ H PP R+
Sbjct: 442 PGVQPHTPPSHHRN 455
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++IG +P + E+D+R +G V + L+K +++N+N+ FAF+ + + A +
Sbjct: 115 VYIGGIPHDASEEDLRGFCESVG-EVTEVRLMKG-KDSNENKRFAFVTFRSVDLASKAID 172
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
+++N +FK + + S A L++ N+P+ ++ L+++ A G
Sbjct: 173 ELNNTEFK------------GKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEVG 217
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +P D +++ L+ G++T+V + K E R+ FV F A KA+
Sbjct: 115 VYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRFAFVTFRSVDLASKAIDEL 174
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS A+
Sbjct: 175 NNTEFKGKRIKCSTAQ 190
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/343 (72%), Positives = 281/343 (81%), Gaps = 14/343 (4%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGK+SGEAKGYAFVTF TKELAS+AIEELN+ E KGK+IKCS +Q KH+LFIGNVP+ W
Sbjct: 135 MKGKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPKYW 194
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E DM+K V +IGPGVI +EL+KDPQN+++NRG+AFIEYYNHACAEYSRQKMSN FKL
Sbjct: 195 TEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAEYSRQKMSNSNFKLG 254
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADPRN+ESSA S VK++YVKNLP++ITQDRLKELF HHGKITKVV+P AK G
Sbjct: 255 SNAPTVSWADPRNSESSAISLVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSG 314
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE+SR+GFVHFAERSSAMKALKNTEKYEIDGQ+L+CSLAKPQA NSQK AL P
Sbjct: 315 QEKSRFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQA--------NSQKPALLP 366
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
TYPPHLGYGMVGGA GA AGFAQP++YG G PGGMAM+PM+L DGRI Y++QQ
Sbjct: 367 TYPPHLGYGMVGGAIGAGYGA---AGFAQPLMYGPGPTPGGMAMMPMMLSDGRIAYIVQQ 423
Query: 301 PGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDN-GRGRSRYNPY 342
PG QQ P P R GR G SSS G + DN RG RY+PY
Sbjct: 424 PGFQQ--PAPVSRHGRSGGSSSSGGKCSNDDNRNRGHGRYHPY 464
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++IG +P+N E+D+R +G V + ++K + + + +G+AF+ + A +
Sbjct: 104 EVYIGGIPQNVSEEDLRVFCQSVGE-VSEVRIMKG-KESGEAKGYAFVTFMTKELASKAI 161
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK-ALYVKNLPKDITQDRLKELFAHHGK 168
++++N +FK + SQVK L++ N+PK T+ +K++ A G
Sbjct: 162 EELNNSEFK-------------GKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIGP 208
Query: 169 ITKVVIPPAKPGQERSR---YGFVHFAERSSA 197
+ + K Q SR Y F+ + + A
Sbjct: 209 GV-ICVELLKDPQNSSRNRGYAFIEYYNHACA 239
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +P++++++ L+ G++++V I K E Y FV F + A KA++
Sbjct: 105 VYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEEL 164
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CS ++
Sbjct: 165 NNSEFKGKRIKCSTSQ 180
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 250/306 (81%), Gaps = 1/306 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
KGKD+ E +G+AFVT+R+ ELAS+AI+ELN+ E K KIKCS +QAK RLFIGN+PR+W
Sbjct: 379 FKGKDASENRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSW 438
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE D++K V+ IGPGV ++EL+KD +N + NRG+AFI+Y+N+ CAEYSRQKM++P FKL
Sbjct: 439 GEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLG 498
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DN PTV+WA+P+NA+SSA+SQVK +YVKNLPK++T+++LK+LF HHGKITKVV+PP KPG
Sbjct: 499 DNFPTVNWAEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPG 558
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHFAERS+AMKALKNTEKY +DGQ+L+CSLAK QAD K + SN Q P
Sbjct: 559 QEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPK-AVVSNIQTQGSLP 617
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
YPPH+GYG+ G YG LGAGY G AQP YG G PGG+AM+P LL D RI YVLQQ
Sbjct: 618 RYPPHVGYGLDGNPYGVLGAGYGAPGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQ 677
Query: 301 PGVQQH 306
PG+Q H
Sbjct: 678 PGLQPH 683
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 250/306 (81%), Gaps = 1/306 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
KGKD+ E +G+AFVT+R+ ELAS+AI+ELN+ E K KIKCS +QAK RLFIGN+PR+W
Sbjct: 414 FKGKDASENRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSW 473
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE D++K V+ IGPGV ++EL+KD +N + NRG+AFI+Y+N+ CAEYSRQKM++P FKL
Sbjct: 474 GEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLG 533
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
DN PTV+WA+P+NA+SSA+SQVK +YVKNLPK++T+++LK+LF HHGKITKVV+PP KPG
Sbjct: 534 DNFPTVNWAEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPG 593
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
QE++R GFVHFAERS+AMKALKNTEKY +DGQ+L+CSLAK QAD K + SN Q P
Sbjct: 594 QEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPK-AVVSNIQTQGSLP 652
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
YPPH+GYG+ G YG LGAGY G AQP YG G PGG+AM+P LL D RI YVLQQ
Sbjct: 653 RYPPHVGYGLDGNPYGVLGAGYGAPGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQ 712
Query: 301 PGVQQH 306
PG+Q H
Sbjct: 713 PGLQPH 718
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/350 (59%), Positives = 265/350 (75%), Gaps = 12/350 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +D+GE KGYAFV F+TKE+A +AIEE++S E KGK ++CS ++ KHRLFIGNVP+ W
Sbjct: 138 MKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTW 197
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
EDD RK V +GPGV +IEL+KDPQN ++NRGFAF+ YYN+ACA+YSRQKM++ FKLD
Sbjct: 198 TEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLD 257
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T ++LKELF HG++TKVV+PP K
Sbjct: 258 GNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKA 317
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G +R +GF+H+AERSSA+KA+K+TEKYEIDGQ+L+ LAKPQAD+K GG + L+
Sbjct: 318 GGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGY-AYNPGLH 375
Query: 240 PTYPPHLGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 297
P + PH YG G YG+LGAGY V AG+ QPM+YGRG P GM M+PM+LPDGRIGYV
Sbjct: 376 PNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMMLPDGRIGYV 435
Query: 298 LQQPGVQQHNPPPQPR-----SGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
LQQPGVQ PP +PR +G G GG D G RY PY
Sbjct: 436 LQQPGVQV--PPARPRRNDRSNGPSGQPGRGGGGASGNDEGNRSRRYRPY 483
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ EDD+R+ +G ++ + L+KD ++ +++G+AF+ + A+ + +
Sbjct: 108 VFIGGLPRDVCEDDLRELCEPMG-DILEVRLMKD-RDTGEHKGYAFVAFKTKEVAQKAIE 165
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ + +FK + S + L++ N+PK T+D +++ G
Sbjct: 166 EIHSKEFK------------GKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGV 213
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQADQ 225
+ +++ P P + R + FV + + A + + + +++DG + A P+
Sbjct: 214 ETIELIKDPQNPSRNRG-FAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSP 272
Query: 226 KTSGGSNSQKSAL 238
S ++SQ AL
Sbjct: 273 DHS--ASSQVKAL 283
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/347 (59%), Positives = 264/347 (76%), Gaps = 8/347 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +DSGE+KGYAF++F+TKE+A +AIEEL+S E KG+ I+CS +++KHRLFIGNVP++W
Sbjct: 133 MKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSLSESKHRLFIGNVPKSW 192
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+D+ RK + IGPG +IEL+KDPQN ++NRGFAF+EYYN+ACA+Y RQKMS+ FKLD
Sbjct: 193 TDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNNACADYGRQKMSSSNFKLD 252
Query: 121 DNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
N PTVSWADP++ ++ SAA+QVKALYVKN+P++ T ++LKELF HG++TKVV+PPAK
Sbjct: 253 GNTPTVSWADPKSTSDHSAAAQVKALYVKNIPENTTTEQLKELFQRHGEVTKVVMPPAKS 312
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
GQ + +GF+HFAERSSA+KA+K+TEK+EIDGQ LD SLAKPQ+D+K G S+ +
Sbjct: 313 GQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQSDKKFEG--VHPYSSGH 370
Query: 240 PTYPPHLGYGMVGG-AYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 297
P + PH GYG GG YG+LG GY V A F QP++YGRG P GM M+PM+LPDGRIGYV
Sbjct: 371 PNFLPHPGYGGFGGNPYGSLGPGYGVSAPFQQPVIYGRGPMPAGMHMVPMVLPDGRIGYV 430
Query: 298 LQQPGVQQ--HNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
LQQPGVQ P RS G S D+ R R RY PY
Sbjct: 431 LQQPGVQMPPPRPRRNERSNGSSGQQGRGGSSGSGDDNRSR-RYRPY 476
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+FIG +PR E+D+R IG + + L+K+ +++ +++G+AFI + A+ +
Sbjct: 102 EIFIGGLPREALEEDLRDLCEPIGEA-LEVRLMKN-RDSGESKGYAFISFKTKEIAQKAI 159
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-- 167
+++ + +FK R S + L++ N+PK T D +++ G
Sbjct: 160 EELHSKEFK------------GRTIRCSLSESKHRLFIGNVPKSWTDDEFRKVIEDIGPG 207
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAM--KALKNTEKYEIDGQVLDCSLAKPQA 223
+ +++ P P + R + FV + + A + ++ +++DG S A P++
Sbjct: 208 AENIELIKDPQNPSRNRG-FAFVEYYNNACADYGRQKMSSSNFKLDGNTPTVSWADPKS 265
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 106 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKAL-------YVKNLPKDITQDR 158
E +++N K D+ PT S + E +Q+ AL ++ LP++ ++
Sbjct: 61 EVDESRIANEPLK-DEENPTASVDE---DEKEKHAQLLALPPHGSEIFIGGLPREALEED 116
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++L G+ +V + + E Y F+ F + A KA++ E G+ + CSL
Sbjct: 117 LRDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSL 176
Query: 219 AK 220
++
Sbjct: 177 SE 178
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/350 (59%), Positives = 264/350 (75%), Gaps = 12/350 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +D+GE KGYAFV F+TKE+A +AIEE++S E KGK ++CS ++ KHRLFIGNVP+ W
Sbjct: 138 MKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTW 197
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
EDD RK V +GPGV +IEL+KDPQN ++NRGFAF+ YYN+ACA+YSRQKM++ FKLD
Sbjct: 198 TEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLD 257
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T ++LKELF HG++TKVV+PP K
Sbjct: 258 GNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKA 317
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G +R +GF+H+AERSSA+KA+K+TEKYEIDGQ+L+ LAKPQAD+K GG + L+
Sbjct: 318 GGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGY-AYNPGLH 375
Query: 240 PTYPPHLGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 297
P + PH YG G YG+LGAGY V AG+ QPM+YGRG P GM M+PM+LPDGRIGYV
Sbjct: 376 PNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYV 435
Query: 298 LQQPGVQQHNPPPQPR-----SGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
LQQPGVQ P +PR +G G GG D G RY PY
Sbjct: 436 LQQPGVQV--PATRPRRIDRSNGPSGQPGRGGGGGSGNDEGNRSRRYRPY 483
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+FIG +PR+ EDD+R+ +G ++ + L+KD ++ +N+G+AF+ + A+ +
Sbjct: 107 EVFIGGLPRDVCEDDLRELCEPMG-DILEVRLMKD-RDTGENKGYAFVAFKTKEVAQKAI 164
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-- 167
+++ + +FK + S + L++ N+PK T+D +++ G
Sbjct: 165 EEIHSKEFK------------GKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPG 212
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ +++ P P + R + FV + + A + + + +++DG + A P+
Sbjct: 213 VETIELIKDPQNPSRNRG-FAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNS 271
Query: 225 QKTSGGSNSQKSAL 238
S ++SQ AL
Sbjct: 272 PDHS--ASSQVKAL 283
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/304 (62%), Positives = 243/304 (79%), Gaps = 5/304 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +D+GE KGYAFV F+ KE+A +AIEE++S E KGK ++CS ++ KHRLFIGNVP+ W
Sbjct: 138 MKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTW 197
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
EDD RK V +GPGV +IEL+KDPQN ++NRGFAF+ YYN+ACA+YSRQKM++ FKLD
Sbjct: 198 TEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLD 257
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T ++LKELF HG++TKVV+PP K
Sbjct: 258 GNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKA 317
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G +R +GF+H+AERSSA+KA+K+TEKYEIDGQ+L+ LAKPQAD+K GG + L+
Sbjct: 318 GGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGY-AYNPGLH 375
Query: 240 PTYPPHLGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 297
P + PH YG G YG+LGAGY V AG+ QPM+YGRG P GM M+PM+LPDGRIGYV
Sbjct: 376 PNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMMLPDGRIGYV 435
Query: 298 LQQP 301
L P
Sbjct: 436 LNNP 439
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+FIG +PR+ EDD+R+ +G ++ + L+KD ++ +++G+AF+ + A+ +
Sbjct: 107 EVFIGGLPRDVCEDDLRELCEPMG-DILEVRLMKD-RDTGEHKGYAFVAFKAKEVAQKAI 164
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-- 167
+++ + +FK + S + L++ N+PK T+D +++ G
Sbjct: 165 EEIHSKEFK------------GKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPG 212
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ +++ P P + R + FV + + A + + + +++DG + A P+
Sbjct: 213 VETIELIKDPQNPSRNRG-FAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNS 271
Query: 225 QKTSGGSNSQKSAL 238
S ++SQ AL
Sbjct: 272 PDHS--ASSQVKAL 283
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 260/350 (74%), Gaps = 10/350 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +DSG++KGYAFV F+TK++A +AIEEL+S E KGK I+CS ++ K+RLFIGN+P+NW
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNW 207
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YSRQKM + FKL+
Sbjct: 208 TEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLE 267
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG++TK+V PP K
Sbjct: 268 GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK 327
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G + +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K S S +A
Sbjct: 328 GG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAP 385
Query: 239 NPTYPPHLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
P H +G A YGA+GAG AG F+QPM+YGRGA P GM M+PMLLPDGR+GY
Sbjct: 386 TPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 445
Query: 297 VLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGRRST---DNGRGRSRYNPY 342
VLQQPG+ PPQ PR GSS GR ++ D RG RY PY
Sbjct: 446 VLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ GE+D+R +IG + + L+KD +++ ++G+AF+ + A+ + +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGE-IFEVRLMKD-RDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
++ + +FK + S + L++ N+PK+ T+D +++ G
Sbjct: 176 ELHSKEFK------------GKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG 220
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ ++ L++L G+I +V + + + Y FV F + A KA++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ + CSL++
Sbjct: 178 HSKEFKGKTIRCSLSE 193
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 256/350 (73%), Gaps = 10/350 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +DSG++KGYAFV F+TK++A +AIE+L+S E KGK I+CS ++ K+RLFIGN+P+NW
Sbjct: 147 MKDRDSGDSKGYAFVAFKTKDVAQKAIEDLHSKEFKGKTIRCSLSETKNRLFIGNIPKNW 206
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YSRQKM + FKL+
Sbjct: 207 TEDEFRKVIENVGPGVENIELIKDPANTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLE 266
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG++TK+V PP K
Sbjct: 267 GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK 326
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G + +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K S S +A
Sbjct: 327 GG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAP 384
Query: 239 NPTYPPHLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
NP H +G A YGA+GAG AG F+QPM+YGRGA P GM M+PMLLPDGR+GY
Sbjct: 385 NPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 444
Query: 297 VLQQPGVQQHNPPPQPRS----GRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
VLQQPG+Q PP G +G S D RG RY PY
Sbjct: 445 VLQQPGMQMAAAPPARPRRVDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 494
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ GE+D+R +IG + + L+KD +++ ++G+AF+ + A+ + +
Sbjct: 117 VFIGGLPRDVGEEDLRDLCEEIGE-IFEVRLMKD-RDSGDSKGYAFVAFKTKDVAQKAIE 174
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
+ + +FK + S + L++ N+PK+ T+D +++ + G
Sbjct: 175 DLHSKEFK------------GKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVGPGV 222
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQADQ 225
+ +++ PA + R + FV + + A + + ++++G + A P++
Sbjct: 223 ENIELIKDPANTTRNRG-FAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSP 281
Query: 226 KTSGGSNSQKS 236
+ S + K+
Sbjct: 282 EHSAAAAQVKA 292
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/362 (54%), Positives = 260/362 (71%), Gaps = 22/362 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK------------GKKIKCSAAQAK 48
MK +DSG++KGYAFV F+TK++A +AIEEL+S E K GK I+CS ++ K
Sbjct: 162 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETK 221
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
+RLFIGN+P+NW ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YS
Sbjct: 222 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 281
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
RQKM + FKL+ NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF H
Sbjct: 282 RQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 341
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G++TK+V PP K G + +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K
Sbjct: 342 GEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 399
Query: 227 TSGGSNSQKSALNPTYPPHLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRGAAPGGMAM 284
S S +A P H +G A YGA+GAG AG F+QPM+YGRGA P GM M
Sbjct: 400 HDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQM 459
Query: 285 LPMLLPDGRIGYVLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGRRST---DNGRGRSRYN 340
+PMLLPDGR+GYVLQQPG+ PPQ PR GSS GR ++ D RG RY
Sbjct: 460 VPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYR 519
Query: 341 PY 342
PY
Sbjct: 520 PY 521
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGP-------------GVISIELVKDPQNANQNRGFAFI 97
+FIG +PR+ GE+D+R +IG ++ + L+KD +++ ++G+AF+
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKD-RDSGDSKGYAFV 176
Query: 98 EYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
+ A+ + +++ + +FK A + S + L++ N+PK+ T+D
Sbjct: 177 AFKTKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTED 236
Query: 158 RLKELFAHHG---KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQ 212
+++ G + +++ P + R + FV + + A + + ++++G
Sbjct: 237 EFRKVIEDVGPGVENIELIKDPTNTTRNRG-FAFVLYYNNACADYSRQKMIDSNFKLEGN 295
Query: 213 VLDCSLAKPQADQKTSGGSNSQKS 236
+ A P++ + S + K+
Sbjct: 296 APTVTWADPKSSPEHSAAAAQVKA 319
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/349 (56%), Positives = 253/349 (72%), Gaps = 13/349 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK KDSGE+KG+AFV F++KE+A +AIEEL+S + KGK ++CS ++ K+RLFIGNVP+N
Sbjct: 138 MKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRCSISETKNRLFIGNVPKNL 197
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + ++GPGV IEL+KDPQ +NRGFAFI YYN+ACA+YSRQKM N FKLD
Sbjct: 198 TEDEFRKIIEEVGPGVEVIELIKDPQTPTRNRGFAFILYYNNACADYSRQKMLNANFKLD 257
Query: 121 DNAPTVSWADPRNA---ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ PTVSWADP+ S+A+SQVKALYVKN+P++ + ++LK LF HG +TKVV+PP
Sbjct: 258 GHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQLKGLFQRHGDVTKVVMPPG 317
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSA 237
K G + +GF+H+AERSSA+KA+++ EKYEIDGQVL+ LAKPQAD+K + +
Sbjct: 318 KAG--KRDFGFIHYAERSSALKAVRDAEKYEIDGQVLEVVLAKPQADKKPD-AAYPYNAG 374
Query: 238 LNPTYPPHLGY-GMVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
++P P Y G G YG+LG G+ V + F QP++YGRG P GM M+PM+LPDGRIG
Sbjct: 375 VHPNPVPLPAYSGFAGNPYGSLGTGFGVASSFQQPVIYGRGPMPAGMHMVPMVLPDGRIG 434
Query: 296 YVLQQPGVQQHNPPPQPRSGRGGAGSSSSG--GRRSTDNGRGRSRYNPY 342
YVLQQPGVQ P P+PR G S G G S D RGR RY PY
Sbjct: 435 YVLQQPGVQM--PQPRPRRVDRNNGPSGPGRAGNSSDDGNRGR-RYRPY 480
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++R IG + I L+KD +++ +++GFAF+ + + A + +
Sbjct: 108 VFIGGLPRDVIEDELRDLCEPIG-EIFEIRLMKD-KDSGESKGFAFVAFKSKEVARKAIE 165
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ + +K + S + L++ N+PK++T+D +++ G
Sbjct: 166 ELHSKDYK------------GKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIEEVGPGV 213
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQADQ 225
++ +++ P P + R + F+ + + A + + +++DG S A P+
Sbjct: 214 EVIELIKDPQTPTRNRG-FAFILYYNNACADYSRQKMLNANFKLDGHTPTVSWADPKGTP 272
Query: 226 KTSGGSNSQKSAL 238
++SQ AL
Sbjct: 273 PDHSAASSQVKAL 285
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 120 DDNAPTVSWADPRNAESSAASQVKAL-------YVKNLPKDITQDRLKELFAHHGKITKV 172
D+ PT S + E +Q+ AL ++ LP+D+ +D L++L G+I ++
Sbjct: 79 DEQKPTASVNE---EEKEKHAQLLALPPHGSEVFIGGLPRDVIEDELRDLCEPIGEIFEI 135
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
+ K E + FV F + A KA++ + G+ L CS+++
Sbjct: 136 RLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRCSISE 183
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/308 (59%), Positives = 243/308 (78%), Gaps = 9/308 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K KDSGE+KGYAF+ F+TKE A +AIE+L+ E+KGK I+CS + +KHRLFIGNVP++W
Sbjct: 137 IKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNVPKSW 196
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+D+ R+ + +GPGV +IEL+KDPQN N+NRGFAF+ YYN+ACA+YSRQKMS+ FKLD
Sbjct: 197 TDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNACADYSRQKMSSANFKLD 256
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
N+PTVSWADP++ ++SAA+QVKALYVKN+P++ T ++LKELF HG++TKV +PP K
Sbjct: 257 GNSPTVSWADPKSMPDNSAAAQVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKA 316
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G + + F+H+AERSSA+KA+K TEKYEI+GQ+L+ LAKPQ+D+K+ G S ++
Sbjct: 317 GSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAY----SHIS 372
Query: 240 PTYPPHLGY----GMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
+YP HL + G G YG+LG V AGF QPM+YGRG P GM M+PM+LPDGRIG
Sbjct: 373 GSYPNHLLHGGYGGYGGNPYGSLGGYGVTAGFHQPMIYGRGPMPAGMQMVPMVLPDGRIG 432
Query: 296 YVLQQPGV 303
YVLQQPGV
Sbjct: 433 YVLQQPGV 440
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ L +D+ ++ L+++ G+I ++ I K E Y F+ F + +A KA+++
Sbjct: 107 VFIGGLSRDVLEEDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDL 166
Query: 205 EKYEIDGQVLDCSLA 219
E+ G+ + CSL+
Sbjct: 167 HGKEVKGKTIRCSLS 181
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 252/350 (72%), Gaps = 10/350 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +DSG++KGYAFV F+TK++A +AIEEL+S E K + +RLFIGN+P+NW
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSNRLFIGNIPKNW 207
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YSRQKM + FKL+
Sbjct: 208 TEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLE 267
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG++TK+V PP K
Sbjct: 268 GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK 327
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G + +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K S S +A
Sbjct: 328 GG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAP 385
Query: 239 NPTYPPHLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
P H +G A YGA+GAG AG F+QPM+YGRGA P GM M+PMLLPDGR+GY
Sbjct: 386 TPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 445
Query: 297 VLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGRRST---DNGRGRSRYNPY 342
VLQQPG+ PPQ PR GSS GR ++ D RG RY PY
Sbjct: 446 VLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 495
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ GE+D+R +IG + + L+KD +++ ++G+AF+ + A+ + +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGE-IFEVRLMKD-RDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ + +FK A + + S L++ N+PK+ T+D +++ G
Sbjct: 176 ELHSKEFKASSTA------------NCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQADQ 225
+ +++ P + R + FV + + A + + ++++G + A P++
Sbjct: 224 ENIELIKDPTNTTRNRG-FAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSP 282
Query: 226 KTSGGSNSQKS 236
+ S + K+
Sbjct: 283 EHSAAAAQVKA 293
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 253/350 (72%), Gaps = 18/350 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +DSG++KGYAFV F+TK++A +AIEEL+S E KGK I+CS ++ K+RLFIGN+P+NW
Sbjct: 128 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNW 187
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + +GPG DP N +NRGFAF+ YYN+ACA+YSRQKM + FKL+
Sbjct: 188 TEDEFRKVIEDVGPG--------DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLE 239
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG++TK+V PP K
Sbjct: 240 GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK 299
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G + +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K S S +A
Sbjct: 300 GG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAP 357
Query: 239 NPTYPPHLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
P H +G A YGA+GAG AG F+QPM+YGRGA P GM M+PMLLPDGR+GY
Sbjct: 358 TPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 417
Query: 297 VLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGRRST---DNGRGRSRYNPY 342
VLQQPG+ PPQ PR GSS GR ++ D RG RY PY
Sbjct: 418 VLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 467
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ GE+D+R +IG + + L+KD +++ ++G+AF+ + A+ + +
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGE-IFEVRLMKD-RDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + +FK + S + L++ N+PK+ T+D + K+
Sbjct: 156 ELHSKEFK------------GKTIRCSLSETKNRLFIGNIPKNWTEDEFR-------KVI 196
Query: 171 KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQADQKT 227
+ V P R+R + FV + + A + + ++++G + A P++ +
Sbjct: 197 EDVGPGDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEH 256
Query: 228 SGGSNSQKS 236
S + K+
Sbjct: 257 SAAAAQVKA 265
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 248/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 143 MRGKD--DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RK V ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 201 TDDDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 259
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 260 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 319
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 320 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 378
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 379 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 431
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 432 YVVQQPGGQLPLASPPPQ 449
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A + +
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKAVK 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D +++ G +
Sbjct: 169 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGV 216
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 217 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSA 276
Query: 228 S 228
S
Sbjct: 277 S 277
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 248/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 143 MRGKD--DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RK V ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 201 TDDDFRKVVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 259
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 260 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 319
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 320 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 378
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 379 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 431
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 432 YVVQQPGGQLPLASPPPQ 449
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A + +
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKAVK 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D +++ G +
Sbjct: 169 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGV 216
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 217 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSA 276
Query: 228 S 228
S
Sbjct: 277 S 277
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 248/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 143 MRGKD--DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RK V ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 201 TDDDFRKVVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 259
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 260 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 319
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 320 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 378
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 379 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 431
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 432 YVVQQPGGQLPLASPPPQ 449
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A + +
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKAVK 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D +++ G +
Sbjct: 169 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGV 216
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 217 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSA 276
Query: 228 S 228
S
Sbjct: 277 S 277
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/314 (59%), Positives = 245/314 (78%), Gaps = 15/314 (4%)
Query: 8 EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK 67
E+KGYAF+TF+TK+LA +AIE+L++ KGKKI+ S++QAK++LF+GNVP +W DD++K
Sbjct: 219 ESKGYAFITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKK 278
Query: 68 AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127
AV ++GPGV+ I+L+KDP+ ++NRG+ F+EYYN+ACAEYSRQKMS P FKLD NAPTVS
Sbjct: 279 AVEEVGPGVLKIDLIKDPR-TDRNRGYGFVEYYNNACAEYSRQKMSTPNFKLDTNAPTVS 337
Query: 128 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
WADP+N +S++ SQVK++YVKNLPK++TQ +LK+LF HHG+ITK+V+PP+K G + +RYG
Sbjct: 338 WADPKNGDSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHD-NRYG 396
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN----PTYP 243
FVHF +R AMKALKNTEKYE+DGQ+LDCSLAKP AD+K S S + P
Sbjct: 397 FVHFKDRHMAMKALKNTEKYELDGQLLDCSLAKPPADKKDDTVSVSSSHKSSAKGGPLLH 456
Query: 244 PHLGYGMV--GGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQP 301
LGYG++ AYGA + G AQPM+Y GA PG AM+PMLLPDGR+ YV+QQP
Sbjct: 457 APLGYGIMPRPDAYGAPPS----YGAAQPMLYAPGAPPGA-AMVPMLLPDGRLVYVVQQP 511
Query: 302 GVQQH--NPPPQPR 313
QQH +PPPQ R
Sbjct: 512 APQQHFASPPPQAR 525
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/319 (59%), Positives = 247/319 (77%), Gaps = 20/319 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKD +++GYAFVTFRTK+LA +A+ ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 151 MKGKD--DSRGYAFVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 208
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K + N+NRG+ F+EYYNHACAEY+RQKMS P FKLD
Sbjct: 209 TQDDFRKAVEEVGPGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLD 267
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HG+ITKVV+PP++ G
Sbjct: 268 TNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGG 327
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA----DQKTSGGSNSQKS 236
+ +RYGFVHF +RS AM+AL+NTE+YE+ GQVLDCSLAKP A D++ S S S +
Sbjct: 328 HD-NRYGFVHFKDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPS-SNGA 385
Query: 237 ALNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI 294
L P+YPP LGYG+ V AYG PA QPM+Y A PG AM+PM+LPDGR+
Sbjct: 386 PLLPSYPP-LGYGIMSVPSAYGV-----APASITQPMLYAPRAPPGP-AMVPMMLPDGRL 438
Query: 295 GYVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 439 VYVVQQPGGQLPLSSPPPQ 457
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++ G + + +D++K +G V+ + ++K + +RG+AF+ + A + +
Sbjct: 121 VYFGGISSDISSEDLKKLCEPVG-EVVEVRMMK---GKDDSRGYAFVTFRTKDLALEAVR 176
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P TQD ++ G +
Sbjct: 177 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVGPGV 224
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + +T +++D S A P+ +
Sbjct: 225 LKADLMKVSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKNNDSA 284
Query: 228 S 228
S
Sbjct: 285 S 285
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 248/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 143 MRGKD--DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RK V ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 201 TDDDFRKVVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 259
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 260 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 319
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 320 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 378
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 379 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 431
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 432 YVVQQPGGQLPLASPPPQ 449
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A + +
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKAVK 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D +++ G +
Sbjct: 169 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGV 216
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 217 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSA 276
Query: 228 S 228
S
Sbjct: 277 S 277
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 248/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 156 MRGKD--DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 213
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RK V ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 214 TDDDFRKVVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 272
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 273 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 332
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 333 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 391
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 392 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 444
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 445 YVVQQPGGQLPLASPPPQ 462
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A + +
Sbjct: 126 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKAVK 181
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D +++ G +
Sbjct: 182 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGV 229
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 230 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSA 289
Query: 228 S 228
S
Sbjct: 290 S 290
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 247/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 521 MRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 578
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 579 TDDDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 637
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S + SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 638 SNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 697
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 698 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 756
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 757 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 809
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 810 YVVQQPGGQLPLASPPPQ 827
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 248/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 155 MRGKD--DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 212
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RK V ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 213 TDDDFRKVVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 271
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 272 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 331
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 332 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 390
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 391 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 443
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 444 YVVQQPGGQLPLASPPPQ 461
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A + +
Sbjct: 125 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKAVK 180
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D +++ G +
Sbjct: 181 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGV 228
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 229 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSA 288
Query: 228 S 228
S
Sbjct: 289 S 289
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 247/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 142 MRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 199
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 200 TDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 258
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S + SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 259 SNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 318
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 319 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 377
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 378 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 430
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 431 YVVQQPGGQLPLASPPPQ 448
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + +D+++ +G V+ + +++ + +RG+AF+ + A +
Sbjct: 112 VYVGGISSDVSSEDLKRLCEPVG-EVVEVRMMR---GKDDSRGYAFVNFRTKGLALKVVK 167
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P T D ++ G +
Sbjct: 168 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGV 215
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + ++ +++D S A P+ +
Sbjct: 216 LKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSV 275
Query: 228 S 228
S
Sbjct: 276 S 276
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 247/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 2 MRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 59
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 60 TDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 118
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S + SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 119 SNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 178
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 179 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 237
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 238 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLV 290
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 291 YVVQQPGGQLPLASPPPQ 308
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/318 (59%), Positives = 247/318 (77%), Gaps = 18/318 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 552 MRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 609
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 610 TDDDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 668
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G
Sbjct: 669 SNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 728
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSA 237
+ +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 729 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 787
Query: 238 LNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDG +
Sbjct: 788 LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGHLV 840
Query: 296 YVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 841 YVVQQPGGQLPLASPPPQ 858
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/319 (58%), Positives = 250/319 (78%), Gaps = 10/319 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K +++GE+KGYAFV ++TKE+A +AI+++++ E KGK ++C ++ KHRLFIGN+P+ W
Sbjct: 136 IKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTW 195
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RKAV +GPGV SI+L+KDPQN ++NRGFAF+ YYN+ACA++SRQKMS+ FKLD
Sbjct: 196 TEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLD 255
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
PTV+WADP+ + +S+AASQVKALYVKN+P+++T ++LKELF HG++TKVV+PP K
Sbjct: 256 GITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGK 315
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
+R +GF+H+AERSSA+KA+K TEKYEIDGQ L+ +AKPQA++K GG + L
Sbjct: 316 ASGKRD-FGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGY-AYNPGL 373
Query: 239 NPTYPPHLGYG-MVGGAYGALGAGYVPAGFA---QPMVYGRGAAPGGMAMLPMLLPDGRI 294
+P + PH GYG G YG++GAGY A A QPM+YGRG P GM M+PM+LPDGRI
Sbjct: 374 HPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRI 433
Query: 295 GYVLQQPGVQQHNPPPQPR 313
GYVLQQPGVQ P P+PR
Sbjct: 434 GYVLQQPGVQV--PGPRPR 450
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+FIG +PR+ +DD+R+ +G ++ I+L+KD + +++G+AF+ Y A+ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMG-DIVEIKLIKD-RETGESKGYAFVGYKTKEVAQKAI 162
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ N +FK +S R L++ N+PK T+D ++ G
Sbjct: 163 DDIHNKEFKGKTLRCLLSETKHR------------LFIGNIPKTWTEDEFRKAVEGVGPG 210
Query: 170 TKVVIPPAKP-GQERSR-YGFVHFAERSSA--MKALKNTEKYEIDGQVLDCSLAKPQADQ 225
+ + P Q R+R + FV + + A + ++ +++DG + A P+
Sbjct: 211 VESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSP 270
Query: 226 KTSGGSNSQKSAL 238
S + SQ AL
Sbjct: 271 DQSAAA-SQVKAL 282
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/333 (57%), Positives = 248/333 (74%), Gaps = 28/333 (8%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GK G+ K YAF+ FRTKE+A +AI +L + +LKGKKIK S++QAK+RLFIGNVPR+W
Sbjct: 135 MRGK--GDNKAYAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNVPRDW 192
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
DD + AV ++GPGV+ ++L+K P + +N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 193 TPDDFKTAVEEVGPGVLQVDLMKAP-GSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 251
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWADP+NA E+++ +QVK+LYVKN+PK +TQ++LK+LF H G+ITKVVIPPAK
Sbjct: 252 TNAPTVSWADPKNANEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKS 311
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK--TSGGSNSQKSA 237
G E +RYGFVHF ERS AMKALKNTE+YE+DGQ+LDCSLAKP AD+K T ++ +
Sbjct: 312 GHE-NRYGFVHFKERSMAMKALKNTERYELDGQLLDCSLAKPPADKKDDTVSAPTAKGAP 370
Query: 238 LNPTYPPHLGYGMVG----------GAYGALGAGY------VPAGFAQPMVYGRGAAPGG 281
L P+Y P LGYG+VG GAY LG+G + A AQPM+Y GA PG
Sbjct: 371 LLPSYAP-LGYGLVGAYNPLGNGLAGAYNPLGSGLAGAYGVLSARAAQPMLYAPGAPPGS 429
Query: 282 MAMLPMLLPDGRIGYVLQQPG---VQQHNPPPQ 311
M+PM+LPDGR+ YV Q G V +PPPQ
Sbjct: 430 -TMIPMVLPDGRLVYVPQTAGQQPVHVTSPPPQ 461
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 166/325 (51%), Positives = 240/325 (73%), Gaps = 6/325 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K KD+G+ KGYAFVTF +E A +AIE LN E+KG+K++ S +Q+KHRLF+GN+P+ W
Sbjct: 157 LKDKDTGQNKGYAFVTFLNEECAEKAIETLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTW 216
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
++++ +++ GPG+ S+EL+KDP+ +NRGF F+EYYNHACAE++R++MS F+L
Sbjct: 217 EKEELESVLSEQGPGIQSVELLKDPKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLG 276
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPT+SWADPR+ + SA SQVK +YV+NLP +T+++L++LF HG+I KVV+P KP
Sbjct: 277 TNAPTISWADPRSGPDVSAMSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKP 336
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNS---QKS 236
GQ + +GFVHF++R+ A+KA++ TE YE++G++L+ SLAKP A+++ +GG + Q++
Sbjct: 337 GQAKRDFGFVHFSDRAQALKAIEKTEVYELEGRILETSLAKPPAEKRAAGGEPAYPPQRA 396
Query: 237 ALNPTYPPHLGYGMVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
L P + GYG G Y ++G Y P G+ QP++YGRG AP GM M+PM+LPDGR+G
Sbjct: 397 GLLPQHQNRSGYGYGGDVYNSVGGAYGQPRGYNQPIIYGRGLAPAGMTMVPMMLPDGRVG 456
Query: 296 YVLQQPGVQQHNPPPQPRSGRGGAG 320
YVLQQP Q P P R GRG G
Sbjct: 457 YVLQQPSGGQGGPAPY-RGGRGSHG 480
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + R+ E+D+R + G V + L+KD ++ QN+G+AF+ + N CAE + +
Sbjct: 127 IFVGGITRDTTEEDLRTLCSSCG-DVYEVRLLKD-KDTGQNKGYAFVTFLNEECAEKAIE 184
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
+++ + K R S + L+V N+PK ++ L+ + + G
Sbjct: 185 TLNDSEVK------------GRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQGPGI 232
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206
+ +++ P PG+ R +GFV + + A A + K
Sbjct: 233 QSVELLKDPKTPGRNRG-FGFVEYYNHACAEHARREMSK 270
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 187/319 (58%), Positives = 245/319 (76%), Gaps = 20/319 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GKD +++GYAFV FRTK LA + ++ELN+ +LK I+ S++QAK++LFIGNVP +W
Sbjct: 199 MRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLK-VWIRVSSSQAKNKLFIGNVPHSW 255
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD
Sbjct: 256 TDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 314
Query: 121 DNAPTVSWADPRNAESSAASQ-VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWADP+N +S++ SQ VK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++
Sbjct: 315 SNAPTVSWADPKNNDSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG 374
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKS 236
G + +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 375 GHD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGA 433
Query: 237 ALNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI 294
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 434 PLLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRL 486
Query: 295 GYVLQQPGVQ--QHNPPPQ 311
YV+QQPG Q +PPPQ
Sbjct: 487 VYVVQQPGGQLPLASPPPQ 505
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 180/303 (59%), Positives = 235/303 (77%), Gaps = 21/303 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MKGKD +++GYAFVTFRTK+LA +A+ ELN+ +LKGK+I+ S++QAK++LFIGNVP +W
Sbjct: 123 MKGKD--DSRGYAFVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSW 180
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+DD RKAV ++GPGV+ +L+K + N+NRG+ F+EYYNHACAEY+RQKMS P FKLD
Sbjct: 181 TQDDFRKAVEEVGPGVLKADLMK-VSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLD 239
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ LK+LF HHG ITKVV+PP++ G
Sbjct: 240 TNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGG 299
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA----DQKTSGGSNSQKS 236
+ +RYGFVHF +RS AM+AL+NTE+YE+ GQVLDCSLAKP A D++ S S S +
Sbjct: 300 HD-NRYGFVHFKDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPS-SNGA 357
Query: 237 ALNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI 294
L P+YPP LGYG+ V AYG A+PM+Y A PG AM+PM+LPDGR+
Sbjct: 358 PLLPSYPP-LGYGIMSVPSAYG--------VAPARPMLYAPRAPPGP-AMVPMMLPDGRL 407
Query: 295 GYV 297
YV
Sbjct: 408 VYV 410
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 19/181 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + + D++K +G V+ + ++K + +RG+AF+ + A + +
Sbjct: 93 VYVGGISSDISSQDLKKLCEPVG-EVVEVRMMK---GKDDSRGYAFVTFRTKDLALEAVR 148
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+++N K K + S++ L++ N+P TQD ++ G +
Sbjct: 149 ELNNAKLK------------GKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVGPGV 196
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
K + YGFV + + A A + +T +++D S A P+ +
Sbjct: 197 LKADLMKVSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKNNDSA 256
Query: 228 S 228
S
Sbjct: 257 S 257
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 190/339 (56%), Positives = 241/339 (71%), Gaps = 39/339 (11%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GK G+ + YAF+ FRTK +A +AI+ L++ +LKGKKIK S +QAK+RLFIGNVP +W
Sbjct: 135 MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDW 192
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
DD + AV ++GPGV+ +EL+K P ++N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 193 THDDFKTAVEEVGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 251
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWADP+NA E+++ +QVK+LYVKNLPK +TQ++LK+LF H G+ITKVV+PPAK
Sbjct: 252 TNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKS 311
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKSA 237
G E +RYGFVHF ER AMKALKNTE+YE+DGQ+LDCSLAKP AD+K S S ++
Sbjct: 312 GHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGGP 370
Query: 238 LNPTYPPHLGYGMVG----------------------GAYGALGAGYVPAGFAQPMVYGR 275
L P+Y P LGYG+VG GAYG L A AQPMVY
Sbjct: 371 LLPSYAP-LGYGLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLS-----ARAAQPMVYAP 424
Query: 276 GAAPGGMAMLPMLLPDGRIGYVLQQPG---VQQHNPPPQ 311
GA PG M+PM+LPDGR+ YV Q G V +P PQ
Sbjct: 425 GAPPGS-TMIPMVLPDGRLVYVPQAAGQQPVHATSPLPQ 462
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+YV + D++ + LK+LF G++ +V + G R+ Y F++F ++ A+KA++N
Sbjct: 106 VYVGGISSDVSSEDLKQLFESVGEVVEVRM--RGKGDNRT-YAFINFRTKAMALKAIQNL 162
Query: 205 EKYEIDGQVLDCS 217
++ G+ + S
Sbjct: 163 SNKDLKGKKIKVS 175
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/323 (58%), Positives = 242/323 (74%), Gaps = 25/323 (7%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GK G+ K YAF+ FRTKE+A +AI++L++ +LKGKKIK S++QAK+RLFIGNVP +W
Sbjct: 134 MRGK--GDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDW 191
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
DD + AV ++GPGV+ ++L+K P + +N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 192 TPDDFKTAVEEVGPGVLKVDLMKAP-GSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 250
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWAD +NA E+++ SQVK+LYVKNLPK +TQ++LK+LF H G+ITKVVIPPAK
Sbjct: 251 TNAPTVSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKS 310
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN--SQKSA 237
G E +RYGFVHF ERS MKALKNTE+YE+DGQ+LDCS AKP AD+K GS+ ++
Sbjct: 311 GHE-NRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRP 369
Query: 238 LNPTYPPHLGYGMVG----------GAY-----GALGA-GYVPAGFAQPMVYGRGAAPGG 281
L P+Y P LGYG+ G GAY G GA G + A AQPM+Y GA+PG
Sbjct: 370 LPPSYAP-LGYGLAGAYNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLYAPGASPGS 428
Query: 282 MAMLPMLLPDGRIGYVLQQPGVQ 304
M+PM+LPDGR+ YV Q G Q
Sbjct: 429 -TMIPMVLPDGRLVYVPQTAGQQ 450
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/323 (57%), Positives = 241/323 (74%), Gaps = 25/323 (7%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GK G+ K YAF+ FRTKE+A +AI++L++ +LKGKKIK S++QAK+RLFIGNVP +W
Sbjct: 144 MRGK--GDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDW 201
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
DD + AV ++GPGV+ ++L+K P + +N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 202 TPDDFKTAVEEVGPGVLKVDLMKAP-GSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 260
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWAD +NA E+++ SQVK+LYVKNLPK +TQ++LK+LF H G+ITKVVIPPAK
Sbjct: 261 TNAPTVSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKS 320
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN--SQKSA 237
G E +RYGFVHF ERS MKALKNTE+YE+DGQ+LDCS AKP AD+K GS+ ++
Sbjct: 321 GHE-NRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRP 379
Query: 238 LNPTYPPHLGYGMVG----------GAYGALGAGY------VPAGFAQPMVYGRGAAPGG 281
L P+Y P LGYG+ G GAY + G G + A AQPM+Y GA+PG
Sbjct: 380 LPPSYAP-LGYGLAGAYNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLYAPGASPGS 438
Query: 282 MAMLPMLLPDGRIGYVLQQPGVQ 304
M+PM+LPDGR+ YV Q G Q
Sbjct: 439 -TMIPMVLPDGRLVYVPQTAGQQ 460
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 187/329 (56%), Positives = 237/329 (72%), Gaps = 36/329 (10%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GK G+ + YAF+ FRTK +A +AI+ L++ +LKGKKIK S +QAK+RLFIGNVP +W
Sbjct: 134 MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDW 191
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
DD + AV ++GPGV+ +EL+K P ++N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 192 THDDFKTAVEEVGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 250
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWADP+NA E+++ +QVK+LYVKNLPK +TQ++LK+LF H G+ITKVV+PPAK
Sbjct: 251 TNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKS 310
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKSA 237
G E +RYGFVHF ER AMKALKNTE+YE+DGQ+LDCSLAKP AD+K S S ++
Sbjct: 311 GHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGGP 369
Query: 238 LNPTYPPHLGYGMVG----------------------GAYGALGAGYVPAGFAQPMVYGR 275
L P+Y P LGYG+VG GAYG L A AQPMVY
Sbjct: 370 LLPSYAP-LGYGLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARA-----AQPMVYAP 423
Query: 276 GAAPGGMAMLPMLLPDGRIGYVLQQPGVQ 304
GA PG M+PM+LPDGR+ YV Q G Q
Sbjct: 424 GAPPGS-TMIPMVLPDGRLVYVPQAAGQQ 451
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+YV + D++ + LK+LF G++ +V + G R+ Y F++F ++ A+KA++N
Sbjct: 105 VYVGGISSDVSSEDLKQLFESVGEVVEVRM--RGKGDNRT-YAFINFRTKAMALKAIQNL 161
Query: 205 EKYEIDGQVLDCS 217
++ G+ + S
Sbjct: 162 SNKDLKGKKIKVS 174
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 184/322 (57%), Positives = 234/322 (72%), Gaps = 36/322 (11%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+GK G+ + YAF+ FRTK +A +AI+ L++ +LKGKKIK S +QAK+RLFIGNVP +W
Sbjct: 135 MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDW 192
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
DD + AV ++GPGV+ +EL+K P ++N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 193 THDDFKTAVEEVGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 251
Query: 121 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
NAPTVSWADP+NA E+++ +QVK+LYVKNLPK +TQ++LK+LF H G+ITKVV+PPAK
Sbjct: 252 TNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKS 311
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKSA 237
G E +RYGFVHF ER AMKALKNTE+YE+DGQ+LDCSLAKP AD+K S S ++
Sbjct: 312 GHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGGP 370
Query: 238 LNPTYPPHLGYGMVG----------------------GAYGALGAGYVPAGFAQPMVYGR 275
L P+Y P LGYG+VG GAYG L A AQPMVY
Sbjct: 371 LLPSYAP-LGYGLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLS-----ARAAQPMVYAP 424
Query: 276 GAAPGGMAMLPMLLPDGRIGYV 297
GA PG M+PM+LPDGR+ YV
Sbjct: 425 GAPPGS-TMIPMVLPDGRLVYV 445
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+YV + D++ + LK+LF G++ +V + G R+ Y F++F ++ A+KA++N
Sbjct: 106 VYVGGISSDVSSEDLKQLFESVGEVVEVRM--RGKGDNRT-YAFINFRTKAMALKAIQNL 162
Query: 205 EKYEIDGQVLDCS 217
++ G+ + S
Sbjct: 163 SNKDLKGKKIKVS 175
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/331 (55%), Positives = 235/331 (70%), Gaps = 32/331 (9%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
K YAFV FRTKELA +AI++LN+ +LKGKKI+ S++QAK+RLFIGN+P W ED ++AV
Sbjct: 134 KLYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAV 193
Query: 70 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129
++GPGV+ + LVK P+ ++ N+G+ FIEYYN ACAEY+++KMS P+FKLD NAP VSWA
Sbjct: 194 EEVGPGVVKVNLVKAPR-SDTNKGYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSWA 252
Query: 130 DPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 188
D +N ES++ SQVK+LY+KNLPK +TQ++LK LF H G++TKVVIPPAK G E +RYGF
Sbjct: 253 DTKNGGESASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHE-NRYGF 311
Query: 189 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY 248
VHF ERS AMKALK+TE+YE+DG +LDCSLAKP A++K S + L P+Y P LGY
Sbjct: 312 VHFKERSMAMKALKDTERYELDGHLLDCSLAKPLAEKKDDTTSVPKGGPLLPSYTP-LGY 370
Query: 249 GMVG---------------------GAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPM 287
G++G GAYG LG A AQPM+Y G AP G M+PM
Sbjct: 371 GLMGAYNPLGNGLAGAYNPHGNGVAGAYGVLG-----AQAAQPMLYVPG-APLGSTMIPM 424
Query: 288 LLPDGRIGYVLQQPGVQQHNPPPQPRSGRGG 318
+LPDGR+ Y L QP QQ P P +GG
Sbjct: 425 VLPDGRLVY-LPQPAGQQTVPMTSPPPQKGG 454
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 25/187 (13%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+++G + + DD+RK IG E+V+ + +AF+ + A +
Sbjct: 98 EVYVGGISSDVSSDDLRKLCESIG------EVVEVRMPGKSGKLYAFVNFRTKELAVKAI 151
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
QK++N K + S++ L++ N+P T+D KE G
Sbjct: 152 QKLNNKDLK------------GKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAVEEVGPG 199
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQK 226
+ KV + A YGF+ + ++ A A K +T ++++D + S AD K
Sbjct: 200 VVKVNLVKAPRSDTNKGYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSW----ADTK 255
Query: 227 TSGGSNS 233
G S S
Sbjct: 256 NGGESAS 262
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 105 AEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKAL-------YVKNLPKDITQD 157
AE++RQ + K+ D AD E + +++ +L YV + D++ D
Sbjct: 59 AEFARQVDAKHDSKMVD-------ADRDEDEKESHAELLSLPPHGSEVYVGGISSDVSSD 111
Query: 158 RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
L++L G++ +V +P G+ Y FV+F + A+KA++ ++ G+ + S
Sbjct: 112 DLRKLCESIGEVVEVRMP----GKSGKLYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVS 167
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 175/338 (51%), Positives = 232/338 (68%), Gaps = 40/338 (11%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK KD+GE+KG+AFV FR+KE+A +AIEE++S E KGK ++CS ++ K+RLF+GNVP+NW
Sbjct: 141 MKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTLRCSLSETKNRLFVGNVPKNW 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK V ++GPGV IEL++DPQN ++NRGFAF+ YYN+ACA+YSRQKM N FKL+
Sbjct: 201 TEDEFRKVVEEVGPGVDIIELIRDPQNPSRNRGFAFVLYYNNACADYSRQKMLNANFKLE 260
Query: 121 DNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
N PTVSWADP+ +S+AA+QVKALYVKN+P++ + ++LKELF HG
Sbjct: 261 GNTPTVSWADPKGTPDQSAAAAQVKALYVKNIPENTSTEQLKELFQRHG----------- 309
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
+A+++ EKY+IDGQVL+ LAKPQ D+K G +AL
Sbjct: 310 --------------------EAVRDNEKYQIDGQVLEVVLAKPQTDKKPD-GVYPYPAAL 348
Query: 239 NPTYPPHLGY-GMVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
+P++ H Y G G Y +LG G+ V + F QP++YGRG P GM M+PM+LPDGRIGY
Sbjct: 349 HPSHVTHPAYGGFAGNPYSSLGGGFGVASSFQQPVIYGRGPMPAGMHMVPMVLPDGRIGY 408
Query: 297 VLQQPGVQQHNPPPQPRSGRGGAGSSSSG--GRRSTDN 332
VLQQPGVQ P P+PR GSS G G+ STD+
Sbjct: 409 VLQQPGVQM--PQPRPRRVERSNGSSGPGRAGKTSTDH 444
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 20/178 (11%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+FIG +P++ EDD+R IG + I L+KD ++ +++GFAF+ + + A+ +
Sbjct: 110 EVFIGGLPKDALEDDLRDLCEPIG-DIFEIRLMKD-KDTGESKGFAFVAFRSKEVAQKAI 167
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-- 167
+++ + +FK + S + L+V N+PK+ T+D +++ G
Sbjct: 168 EEIHSKEFK------------GKTLRCSLSETKNRLFVGNVPKNWTEDEFRKVVEEVGPG 215
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQ 222
I +++ P P + R + FV + + A + + ++++G S A P+
Sbjct: 216 VDIIELIRDPQNPSRNRG-FAFVLYYNNACADYSRQKMLNANFKLEGNTPTVSWADPK 272
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKAL-------YVKNLPKDITQDRLKEL 162
+K +N + DD PT S + E +Q+ +L ++ LPKD +D L++L
Sbjct: 72 RKCTNSEPLEDDEKPTASVNE---EEKEKHAQLLSLPPHGSEVFIGGLPKDALEDDLRDL 128
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
G I ++ + K E + FV F + A KA++ E G+ L CSL++
Sbjct: 129 CEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTLRCSLSE 186
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/313 (56%), Positives = 231/313 (73%), Gaps = 26/313 (8%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 71
YAFV FRTKELAS+AI++LN+ +LKGKKI+ S++QAK+RLFIGN+P NW E++ +KA +
Sbjct: 135 YAFVNFRTKELASKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFKKAAEE 194
Query: 72 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131
+GPGV+ + LVK P +++ N+G+ FIEYYN ACAEY+++ MS P+FKLD NAP VSWAD
Sbjct: 195 VGPGVLKVNLVKAP-HSDTNKGYGFIEYYNQACAEYAKKMMSTPEFKLDKNAPNVSWADT 253
Query: 132 RN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
+N ES++ +QVK+LYVKNLPK +TQ++LK+LF H G++TKVVIPPAK G E +RYGFVH
Sbjct: 254 KNGGESASTAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHE-NRYGFVH 312
Query: 191 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 250
F ERS AMKAL++TE++E+DGQ+LDCSLAKP AD+K S + L P+Y P +GYG+
Sbjct: 313 FKERSMAMKALEDTERFELDGQLLDCSLAKPLADKKDD-TSAPKGGPLLPSYTP-VGYGL 370
Query: 251 VGGAYGALGAGYVPAG-------------------FAQPMVYGRGAAPGGMAMLPMLLPD 291
+ GAY LG G AG AQPM+Y GA PG M+PM+LPD
Sbjct: 371 M-GAYNPLGNGLAVAGAYNPYGNGLAGAYGVLGAHAAQPMLYVPGAPPGS-TMIPMVLPD 428
Query: 292 GRIGYVLQQPGVQ 304
GR+ YV Q G Q
Sbjct: 429 GRLVYVPQPAGQQ 441
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 173/354 (48%), Positives = 243/354 (68%), Gaps = 22/354 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K K++G KGYAFVT+ +E A +AIE L + ELKG+K++ S +QAKHRLFIGN+P++W
Sbjct: 134 LKDKETGNNKGYAFVTYTNRETAEKAIETLANSELKGRKLRFSHSQAKHRLFIGNIPKSW 193
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
++ K + + GPGV +EL+KDP+N +NRGFAF+EYYNHACA+++R+ MS F+L
Sbjct: 194 DTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEYYNHACADHARKLMSRSSFRLG 253
Query: 121 DNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+N PTVSWADPR AE +A SQ+K +YV+NLP+ +T+++L+ LF HHG+ITKVV+P +KP
Sbjct: 254 NNVPTVSWADPRTGAEPAATSQIKVVYVRNLPEAVTEEQLRGLFEHHGEITKVVLPQSKP 313
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK---- 235
GQ + +GFVHFA+R+ A+KA++ TEKYE++G+VL+ SLAKP ++K + +
Sbjct: 314 GQPKRDFGFVHFADRNDALKAIEKTEKYELEGRVLESSLAKPPVEKKGMDQPLAPQRLGI 373
Query: 236 -SALNP-----TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 289
S L P +YP + Y +G G GY + QP++YGRG P GM M+P+ L
Sbjct: 374 LSQLQPRTAAYSYPVDI-YNNIG-----TGGGYGQNRYNQPLIYGRGPPPAGMTMVPIQL 427
Query: 290 PDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRS-RYNPY 342
PDGR+GYVLQQPG+QQ + GRG SS + +G S RY PY
Sbjct: 428 PDGRLGYVLQQPGIQQQG----SQFGRGVLSSSYRSSSNNAGSGGSSSRRYRPY 477
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 20/178 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG V R+ EDD+R+ + G + + ++KD + N N+G+AF+ Y N AE + +
Sbjct: 104 VFIGGVTRDTNEDDLRELCSPCGE-IFEVRILKDKETGN-NKGYAFVTYTNRETAEKAIE 161
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++N + K R S + L++ N+PK L+++ A G
Sbjct: 162 TLANSELK------------GRKLRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEGPGV 209
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKA--LKNTEKYEIDGQVLDCSLAKPQA 223
+ +++ P PG+ R + FV + + A A L + + + V S A P+
Sbjct: 210 EGVELLKDPRNPGKNRG-FAFVEYYNHACADHARKLMSRSSFRLGNNVPTVSWADPRT 266
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 236/343 (68%), Gaps = 15/343 (4%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K KD+ E KG+AFVTF KE A +AIE++ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 138 KDKDTKENKGFAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLS 197
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
E+++ + GPGVI+IE+ KD + N+NRGF F+EYYNHACA+Y+RQK+S+P FK+D
Sbjct: 198 EEELTNTIKGKGPGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDG 257
Query: 122 NAPTVSWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ TVSWA+P+ + SSAA+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK
Sbjct: 258 SQLTVSWAEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKA 317
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP AD+K +S +
Sbjct: 318 GHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKP---DHSHRPGGG 373
Query: 240 PTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQ 299
P YP G G + QPM+YGRG AP GM M+PM+LPDGR+GYVLQ
Sbjct: 374 PNYPLPPYGGGGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQ 433
Query: 300 QPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
QPG PPP+ S R +G G R RY PY
Sbjct: 434 QPGGMPPPPPPRRGSDRRDSGRGGEGHSR---------RYRPY 467
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ E+D+R+ +G + + L KD ++ +N+GFAF+ + + A+ + +
Sbjct: 107 VFIGGLPRDITEEDLRELCEPLGE-IYEVRLTKD-KDTKENKGFAFVTFMDKEAAQRAIE 164
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+ + +FK R S + L+V N+PK ++++ L G +
Sbjct: 165 DVQDREFK------------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGPGV 212
Query: 170 TKVVIPPAKPGQERSR-YGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQK 226
+ + + R+R + FV + + A A + ++ +++DG L S A+P+
Sbjct: 213 INIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEPKGSTD 272
Query: 227 TSGGSNSQKSALNPTYPPHL 246
S + K+ P ++
Sbjct: 273 ASSAAAQVKTIYVKNLPENV 292
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 235/343 (68%), Gaps = 17/343 (4%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K KD+ E KG+AFVTF KE A +AIE++ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 138 KDKDTKENKGFAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLS 197
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
E+++ + GPGVI+IE+ K + N+NRGF F+EYYNHACA+Y+RQK+S+P FK+D
Sbjct: 198 EEELTNTIKGKGPGVINIEMFK--HDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDG 255
Query: 122 NAPTVSWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ TVSWA+P+ + SSAA+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK
Sbjct: 256 SQLTVSWAEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKA 315
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP AD+K +S +
Sbjct: 316 GHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKP---DHSHRPGGG 371
Query: 240 PTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQ 299
P YP G G + QPM+YGRG AP GM M+PM+LPDGR+GYVLQ
Sbjct: 372 PNYPLPPYGGGGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQ 431
Query: 300 QPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
QPG PPP+ S R +G G R RY PY
Sbjct: 432 QPGGMPPPPPPRRGSDRRDSGRGGEGHSR---------RYRPY 465
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ E+D+R+ +G + + L KD ++ +N+GFAF+ + + A+ + +
Sbjct: 107 VFIGGLPRDITEEDLRELCEPLGE-IYEVRLTKD-KDTKENKGFAFVTFMDKEAAQRAIE 164
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+ + +FK R S + L+V N+PK ++++ L G +
Sbjct: 165 DVQDREFK------------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGPGV 212
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQKT 227
+ + P + R + FV + + A A + ++ +++DG L S A+P+
Sbjct: 213 INIEMFKHDPNRNRG-FLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEPKGSTDA 271
Query: 228 SGGSNSQKSALNPTYPPHL 246
S + K+ P ++
Sbjct: 272 SSAAAQVKTIYVKNLPENV 290
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/308 (53%), Positives = 227/308 (73%), Gaps = 16/308 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK KD+ E KG+AFVTF K++A +AIEEL+ + KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 143 MKDKDTKENKGFAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGL 202
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED++ + GPGV++IE+ KD + ++NRGF F+EYYNHACA+YSRQK+S+P FK+D
Sbjct: 203 SEDELTSIIKGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVD 262
Query: 121 DNAPTVSWADPR------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
+ TVSWA+P+ + SS+A+QVK +YVKNLP++++++++K+LF HG++TK+V+
Sbjct: 263 GSQLTVSWAEPKGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 322
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQ 234
PPAK G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP +D+K +S
Sbjct: 323 PPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSV 378
Query: 235 KSALNPTY--PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDG 292
+ P Y PP+ GY G GF QPM+YGRG AP GM M+PM+LPDG
Sbjct: 379 RPGGPPNYPLPPYGGYMGDPYGAYGGGG----PGFNQPMIYGRGPAPAGMRMVPMVLPDG 434
Query: 293 RIGYVLQQ 300
R+GYVLQQ
Sbjct: 435 RLGYVLQQ 442
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 22/178 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ E+D+R+ +G + + L+KD ++ +N+GFAF+ + A+ + +
Sbjct: 113 VFIGGLPRDTTEEDLRELCEPLGE-IHEVRLMKD-KDTKENKGFAFVTFTAKDVAQRAIE 170
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + K R S + L+V N+PK +++D L + GK
Sbjct: 171 ELHDKDHK------------GRTLRCSLSQAKHRLFVGNVPKGLSEDELTSIIK--GKGP 216
Query: 171 KVV-IPPAKPGQERSR---YGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQ 222
VV I K + SR + FV + + A + + ++ +++DG L S A+P+
Sbjct: 217 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTVSWAEPK 274
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 168/308 (54%), Positives = 233/308 (75%), Gaps = 17/308 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFVTF K++A AIEEL+ + KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 141 MKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGL 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E+++ + GPGV++IE+ KD N ++NRGF F+EYYNHACA+Y+RQK+S+P FK+D
Sbjct: 201 SEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVD 260
Query: 121 DNAPTVSWADPRNAESSA------ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
+ TVSWA+P+ + SS+ A+QVK +YVKNLP++++++++K+LF HG++TK+V+
Sbjct: 261 GSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 320
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQ 234
PPAK G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP +D+K +S
Sbjct: 321 PPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSF 376
Query: 235 KSALNPTY--PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDG 292
K P+Y PP+ GY +G YGA G G GF QPM+YGRG AP GM M+PM+LPDG
Sbjct: 377 KPGGAPSYPLPPYGGY--MGDPYGAYGGG---PGFNQPMIYGRGPAPAGMRMVPMVLPDG 431
Query: 293 RIGYVLQQ 300
R+GYVLQQ
Sbjct: 432 RLGYVLQQ 439
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 85/177 (48%), Gaps = 18/177 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+F+G +PR+ E+D+R+ +G + + L+KD + +N+GFAF+ + A+++
Sbjct: 110 EVFLGGLPRDTTEEDLRQLCEPLGE-IFEVRLMKD-KETKENKGFAFVTFTAKDVAQHAI 167
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+++ + K R S + L+V N+PK ++++ L + G
Sbjct: 168 EELHDKDHK------------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 215
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQ 222
+ + + R+R + FV + + A A + ++ +++DG L S A+P+
Sbjct: 216 VVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPK 272
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 200
Q +++ LP+D T++ L++L G+I +V + K +E + FV F + A A
Sbjct: 107 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 166
Query: 201 LKNTEKYEIDGQVLDCSLAK 220
++ + G+ L CSL++
Sbjct: 167 IEELHDKDHKGRTLRCSLSQ 186
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 168/308 (54%), Positives = 233/308 (75%), Gaps = 17/308 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFVTF K++A AIEEL+ + KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 44 MKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGL 103
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
E+++ + GPGV++IE+ KD N ++NRGF F+EYYNHACA+Y+RQK+S+P FK+D
Sbjct: 104 SEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVD 163
Query: 121 DNAPTVSWADPRNAESSA------ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
+ TVSWA+P+ + SS+ A+QVK +YVKNLP++++++++K+LF HG++TK+V+
Sbjct: 164 GSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 223
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQ 234
PPAK G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP +D+K +S
Sbjct: 224 PPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSF 279
Query: 235 KSALNPTY--PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDG 292
K P+Y PP+ GY +G YGA G G GF QPM+YGRG AP GM M+PM+LPDG
Sbjct: 280 KPGGAPSYPLPPYGGY--MGDPYGAYGGG---PGFNQPMIYGRGPAPAGMRMVPMVLPDG 334
Query: 293 RIGYVLQQ 300
R+GYVLQQ
Sbjct: 335 RLGYVLQQ 342
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 238/346 (68%), Gaps = 20/346 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFV F KE A +AIEEL+ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 136 MKDKETKENKGFAFVNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGL 195
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+++RK + GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y+RQK+S P FK+D
Sbjct: 196 GEEELRKIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVD 255
Query: 121 DNAPTVSWADPR--NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
+ TVSWA+P+ + SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK
Sbjct: 256 GSQLTVSWAEPKGSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAK 315
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G +R +GFVHFAERSSA+KA+K +EKYE +GQVL+ S+AKP D+K +S K A
Sbjct: 316 DGHKRD-FGFVHFAERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKKP---DHSFKPAG 371
Query: 239 NPTY--PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
P + PP+ GY G GF QPM+YGRG AP GM M+PM+LPDGR+GY
Sbjct: 372 APNFPLPPYGGYMGDPYGAYGGGG----PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGY 427
Query: 297 VLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
VLQQPG G GG R + GR RY PY
Sbjct: 428 VLQQPGGIP-------PPPPMRRGDRRDGGSRGGEGSHGR-RYRPY 465
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ E+D+R+ G + + L+KD + +N+GFAF+ + A+ + +
Sbjct: 106 VFIGGLPRDTTEEDLRELCDSFGE-IYEVRLMKD-KETKENKGFAFVNFTAKEAAQRAIE 163
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + + K R S + L+V N+PK + ++ L+++ GK
Sbjct: 164 ELHDKEHK------------GRTLRCSLSQAKHRLFVGNVPKGLGEEELRKII--QGKGP 209
Query: 171 KVV-IPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
VV I K + SR + FV + + A A + +++DG L S A+P+
Sbjct: 210 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPK 267
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 200
Q +++ LP+D T++ L+EL G+I +V + K +E + FV+F + +A +A
Sbjct: 102 QGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRA 161
Query: 201 LKNTEKYEIDGQVLDCSLAK 220
++ E G+ L CSL++
Sbjct: 162 IEELHDKEHKGRTLRCSLSQ 181
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 179/345 (51%), Positives = 238/345 (68%), Gaps = 18/345 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFV F K+ A +AIEEL+ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 139 MKDKETKENKGFAFVNFTAKDAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGL 198
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
GE+++RK + GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y+RQK+S P FK+D
Sbjct: 199 GEEELRKIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVD 258
Query: 121 DNAPTVSWADPR--NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
+ TVSWA+P+ + SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK
Sbjct: 259 GSQLTVSWAEPKGSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAK 318
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
G +R +GFVHFAERSSA+KA+K +EKYE DGQVL+ S+AKP D+K +S K A
Sbjct: 319 DGHKRD-FGFVHFAERSSALKAVKGSEKYEFDGQVLEVSMAKPLGDKKP---DHSFKPAG 374
Query: 239 NPTYP-PHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 297
P +P P G M G G GF QPM+YGRG AP GM M+PM+LPDGR+GYV
Sbjct: 375 APNFPLPPYGAYMGDPYGAYGGGG---PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYV 431
Query: 298 LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
LQQPG G GG R + GR RY PY
Sbjct: 432 LQQPGGIP-------PPPPMRRGDRRDGGSRGGEGSHGR-RYRPY 468
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ E+D+R+ G + + L+KD + +N+GFAF+ + A+ + +
Sbjct: 109 VFIGGLPRDTTEEDLRELCDSFGE-IYEVRLMKD-KETKENKGFAFVNFTAKDAAQRAIE 166
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + + K R S + L+V N+PK + ++ L+++ GK
Sbjct: 167 ELHDKEHK------------GRTLRCSLSQAKHRLFVGNVPKGLGEEELRKII--QGKGP 212
Query: 171 KVV-IPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
VV I K + SR + FV + + A A + +++DG L S A+P+
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPK 270
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 200
Q +++ LP+D T++ L+EL G+I +V + K +E + FV+F + +A +A
Sbjct: 105 QGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKDAAQRA 164
Query: 201 LKNTEKYEIDGQVLDCSLAK 220
++ E G+ L CSL++
Sbjct: 165 IEELHDKEHKGRTLRCSLSQ 184
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/304 (53%), Positives = 222/304 (73%), Gaps = 10/304 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFVTF K+ A +AIE+L+ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 141 MKDKETKENKGFAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGL 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED++R + GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y++QK+S P FK+D
Sbjct: 201 SEDELRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVD 260
Query: 121 DNAPTVSWADPR----NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
+ TVSWA+P+ + SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PP
Sbjct: 261 GSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPP 320
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
AK G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP D+K S
Sbjct: 321 AKAGNKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPD-HSFKPGG 378
Query: 237 ALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 296
A N PP+ GY G GF QPM+YGRG AP GM M+PM+LPDGR+GY
Sbjct: 379 APNFPLPPYGGYMGDPYGAYGGGG----PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGY 434
Query: 297 VLQQ 300
VLQQ
Sbjct: 435 VLQQ 438
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ EDD+ + G + + L+KD + +N+GFAF+ + A+ + +
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGE-ISEVRLMKD-KETKENKGFAFVTFTGKDGAQRAIE 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ + + K R S + L+V N+PK +++D L+ + GK
Sbjct: 169 DLHDKEHK------------GRTLRCSLSQAKHRLFVGNVPKGLSEDELRNII--QGKGP 214
Query: 171 KVV-IPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
VV I K + SR + FV + + A A + +++DG L S A+P+
Sbjct: 215 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 200
Q +++ LP+D T+D L EL G+I++V + K +E + FV F + A +A
Sbjct: 107 QGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRA 166
Query: 201 LKNTEKYEIDGQVLDCSLAK 220
+++ E G+ L CSL++
Sbjct: 167 IEDLHDKEHKGRTLRCSLSQ 186
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/301 (54%), Positives = 221/301 (73%), Gaps = 3/301 (0%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K KD+ E KG+AFVTF K+ A +AIE++ E KG+ ++CS +QAKHRLFIGNVP+
Sbjct: 152 KDKDTNENKGFAFVTFTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLS 211
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
E+++ + GPGV++IE+ KD + N+NRGF F+EYYNHACAEY+R K+S+ FK+D
Sbjct: 212 EEELTNIIKGKGPGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDG 271
Query: 122 NAPTVSWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ TVSWA+P+ SSAA+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK
Sbjct: 272 SQLTVSWAEPKGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKA 331
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP AD+K S
Sbjct: 332 GHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHSHRSGGGPNY 390
Query: 240 PTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQ 299
P P G G +G YGA G G + QPM+YGRG AP GM M+PM+LPDGR+GYVLQ
Sbjct: 391 PLPPYGGGGGYMGDPYGAYGGGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQ 450
Query: 300 Q 300
Q
Sbjct: 451 Q 451
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 18/201 (8%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++FIG +PR+ EDD+R+ +G + + L KD ++ N+N+GFAF+ + + A+ +
Sbjct: 120 QVFIGGLPRDITEDDLRELCEPLGE-IYEVRLTKD-KDTNENKGFAFVTFTDKDAAQRAI 177
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+ + + ++K R S + L++ N+PK ++++ L + G
Sbjct: 178 EDVQDREYK------------GRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKGKGPG 225
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKA-LK-NTEKYEIDGQVLDCSLAKPQADQ 225
+ + + + R+R + FV + + A A LK ++ +++DG L S A+P+
Sbjct: 226 VVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAEPKGQT 285
Query: 226 KTSGGSNSQKSALNPTYPPHL 246
S + K+ P ++
Sbjct: 286 DPSSAAAQVKTIYVKNLPENV 306
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/324 (51%), Positives = 225/324 (69%), Gaps = 26/324 (8%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFVTF K+ A AIE+L+ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 141 MKDKETKENKGFAFVTFTGKDGAQHAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGL 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED++R + GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y++QK+S P FK+D
Sbjct: 201 SEDELRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVD 260
Query: 121 DNAPTVSWADPR----NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
+ TVSWA+P+ + SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PP
Sbjct: 261 GSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPP 320
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
AK G +R +GFVHFAERSSA+KA+K EKYEIDGQVL+ S+AKP D+K S
Sbjct: 321 AKAGNKRD-FGFVHFAERSSALKAVKGNEKYEIDGQVLEVSMAKPLGDKKPD-HSFKPGG 378
Query: 237 ALNPTYPPHLGY-----------------GMVGGAYGALG--AGYVPAGFA-QPMVYGRG 276
A N PP+ GY V GA G + P G A QPM+YGRG
Sbjct: 379 APNFPLPPYGGYMGDPYGAYGGGGPGFNQSQVPKLTGAQGGRTSHEPGGAAEQPMIYGRG 438
Query: 277 AAPGGMAMLPMLLPDGRIGYVLQQ 300
AP GM M+PM+LPDGR+GYVLQQ
Sbjct: 439 PAPAGMRMVPMVLPDGRLGYVLQQ 462
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 22/178 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ EDD+ + G + + L+KD + +N+GFAF+ + A+++ +
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGE-ISEVRLMKD-KETKENKGFAFVTFTGKDGAQHAIE 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ + + K R S + L+V N+PK +++D L+ + GK
Sbjct: 169 DLHDKEHK------------GRTLRCSLSQAKHRLFVGNVPKGLSEDELRNII--QGKGP 214
Query: 171 KVV-IPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
VV I K + SR + FV + + A A + +++DG L S A+P+
Sbjct: 215 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 200
Q +++ LP+D T+D L EL G+I++V + K +E + FV F + A A
Sbjct: 107 QGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQHA 166
Query: 201 LKNTEKYEIDGQVLDCSLAK 220
+++ E G+ L CSL++
Sbjct: 167 IEDLHDKEHKGRTLRCSLSQ 186
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 205/293 (69%), Gaps = 10/293 (3%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 71
YAFVTF TKE A +AIE LN E K KK++ S +Q K+RLF+GN+P N E+++ K V++
Sbjct: 169 YAFVTFTTKESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSE 228
Query: 72 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131
GPG +EL+KDP++ +NRGFAF+EYYN CAE + + M++ KF+LDD TV WA
Sbjct: 229 QGPGYQHLELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWA-- 286
Query: 132 RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 191
++ S++ +VK++YV+NLP+++T+++L+ELF HG++TKVV+ KPGQ + +GFVH+
Sbjct: 287 -TSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHY 345
Query: 192 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK--TSGGSNSQKSALNPTYPPHLGYG 249
A+ SSAMKA++ TEKY ++ + L SLA+P +D+K G S + L + P GYG
Sbjct: 346 ADHSSAMKAIEKTEKYTLEDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYG 405
Query: 250 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPG 302
Y G+ G+ QP++YGRG P GM M+PM+LPDGR+GYVLQQPG
Sbjct: 406 YNPNMY-----GFGSMGYTQPVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPG 453
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 33/209 (15%)
Query: 21 ELASQAIEELNSCELKGKKIKCSAAQAKH--RLFIGNVPRNWGEDDMRKAVTKIGPGVIS 78
E A + EE N EL A+ H +F+GN+PRN ++D+ + G V
Sbjct: 107 EKADKDKEECNDDEL--------LARPPHGTEVFVGNLPRNITKEDLTSLCEQHGE-VFD 157
Query: 79 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 138
+ + ++ +AF+ + A+ + + ++ +FK D VS + P+N
Sbjct: 158 VIIKREASKLE----YAFVTFTTKESAKKAIETLNGFEFK--DKKLRVSESQPKN----- 206
Query: 139 ASQVKALYVKNLPKDITQDRLKELFAHHG---KITKVVIPPAKPGQERSRYGFVHFAERS 195
L++ N+P ++ ++ L ++ + G + +++ P + R + FV + +
Sbjct: 207 -----RLFLGNIPSNLKEEELTKIVSEQGPGYQHLELIKDPKDTTRNRG-FAFVEYYNKG 260
Query: 196 SAMKALKNT--EKYEIDGQVLDCSLAKPQ 222
A KA+KN K+++D +++ A Q
Sbjct: 261 CAEKAMKNMTHSKFQLDDKLITVKWATSQ 289
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKC-------SAAQAKHRLFIG 54
KD+ +G+AFV + K A +A++ + +L K I S+++ +++
Sbjct: 243 KDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQRSSSEEVKSVYVR 302
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+P N E+ +R+ + G + L + P R F F+ Y +H+ A + +K
Sbjct: 303 NLPENVTEEQLRELFGRHGEVTKVVLLEQKP--GQPKRDFGFVHYADHSSAMKAIEKTE- 359
Query: 115 PKFKLDDNAPTVSWADP 131
K+ L+D +VS A P
Sbjct: 360 -KYTLEDRELSVSLARP 375
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 212/352 (60%), Gaps = 74/352 (21%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK KD+GE+KG+AFV F++KE+A +A EEL S + KGK ++CS ++ K+RLFIGNVP+N
Sbjct: 107 MKDKDTGESKGFAFVAFKSKEVARKATEELRSKDYKGKTLRCSISETKNRLFIGNVPKNL 166
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RK + ++GPG+ +EL+KDPQ +NRGFAFI YYN+ACA+YSRQKM N FKLD
Sbjct: 167 TEDEFRKIIEEVGPGMEVLELIKDPQTPTRNRGFAFILYYNNACADYSRQKMLNANFKLD 226
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+ PTVSWADP K +P D + PA G
Sbjct: 227 GHTPTVSWADP----------------KGMPPDHS--------------------PAAAG 250
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
Q A+++TEKYEIDGQ+L+ LAKPQAD+K GS + +NP
Sbjct: 251 Q------------------AVRDTEKYEIDGQLLEVVLAKPQADKKPD-GSYPYNAGVNP 291
Query: 241 TYPPHLGY-GMVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVL 298
P Y G G +G+LG G+ V AGF QP++YGRG P GM M+PM+LPDGRIGYVL
Sbjct: 292 NPVPLPAYSGFAGNPHGSLGTGFGVAAGFQQPVIYGRGPMPAGMHMVPMVLPDGRIGYVL 351
Query: 299 QQPGVQQHNPPPQPR--------SGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
QQPGVQ P PQPR SG G AGSS D RGR RY PY
Sbjct: 352 QQPGVQM--PQPQPRRVDRSNSPSGPGRAGSSGD------DGNRGR-RYRPY 394
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LPKD+ +D L++L G+I ++ + K E + FV F + A KA +
Sbjct: 77 VFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEEL 136
Query: 205 EKYEIDGQVLDCSLAK 220
+ G+ L CS+++
Sbjct: 137 RSKDYKGKTLRCSISE 152
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 136/252 (53%), Positives = 190/252 (75%), Gaps = 6/252 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K++ E KG+AFVTF K+ A +AIE+L+ E KG+ ++CS +QAKHRLF+GNVP+
Sbjct: 141 MKDKETKENKGFAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGL 200
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED++R + GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y++QK+S P FK+D
Sbjct: 201 SEDELRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVD 260
Query: 121 DNAPTVSWADPR----NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
+ TVSWA+P+ + SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PP
Sbjct: 261 GSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPP 320
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
AK G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP D+K S
Sbjct: 321 AKAGNKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPD-HSFKPGG 378
Query: 237 ALNPTYPPHLGY 248
A N PP+ GY
Sbjct: 379 APNFPLPPYGGY 390
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ EDD+ + G + + L+KD + +N+GFAF+ + A+ + +
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGE-ISEVRLMKD-KETKENKGFAFVTFTGKDGAQRAIE 168
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ + + K R S + L+V N+PK +++D L+ + GK
Sbjct: 169 DLHDKEHK------------GRTLRCSLSQAKHRLFVGNVPKGLSEDELRNII--QGKGP 214
Query: 171 KVV-IPPAKPGQERSR---YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
VV I K + SR + FV + + A A + +++DG L S A+P+
Sbjct: 215 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 171/234 (73%), Gaps = 22/234 (9%)
Query: 90 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVK 148
+N+G+ FIEYYN ACAEY++QKMS P+FKLD NAPTVSWAD +NA E+++ SQVK+LYVK
Sbjct: 8 RNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQVKSLYVK 67
Query: 149 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208
NLPK +TQ++LK+LF H G+ITKVVIPPAK G E +RYGFVHF ERS MKALKNTE+YE
Sbjct: 68 NLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHE-NRYGFVHFKERSMVMKALKNTERYE 126
Query: 209 IDGQVLDCSLAKPQADQKTSGGSN--SQKSALNPTYPPHLGYGMVG----------GAYG 256
+DGQ+LDCS AKP AD+K GS+ ++ L P+Y P LGYG+ G GAY
Sbjct: 127 LDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYGLAGAYNPLGKGLAGAYN 185
Query: 257 ALGAGY------VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ 304
+ G G + A AQPM+Y GA+PG M+PM+LPDGR+ YV Q G Q
Sbjct: 186 SPGNGLAGAYGVLSAHAAQPMLYAPGASPGS-TMIPMVLPDGRLVYVPQTAGQQ 238
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 151/196 (77%), Gaps = 6/196 (3%)
Query: 112 MSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
MS+ FKL N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T D+LKELF HG++T
Sbjct: 1 MSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVT 60
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
KVV+PP K G +R +GF+HFAERSSA+KA+K TEKYEIDGQVL+ LAKPQA+++
Sbjct: 61 KVVMPPGKIGGKRD-FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD-- 117
Query: 231 SNSQKSALNPTYPPHLGYGMVGG-AYGALGAGYVPA-GFAQPMVYGRGAAPGGMAMLPML 288
+ + ++P + PH GYG G YG+LG GY A + QPM+YGRG P GM M+PM+
Sbjct: 118 AYAFNPGVHPNHLPHAGYGSYSGNPYGSLGTGYGAAPAYQQPMMYGRGPMPAGMQMVPMV 177
Query: 289 LPDGRIGYVLQQPGVQ 304
LPDGRIGYVLQQPGVQ
Sbjct: 178 LPDGRIGYVLQQPGVQ 193
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/207 (59%), Positives = 154/207 (74%), Gaps = 15/207 (7%)
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 171
MS+P FKLD NAPTVSWADP+N +S + SQVK++YVKNLPK++TQ +LK LF HHG+I K
Sbjct: 1 MSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEK 60
Query: 172 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG- 230
VV+PP++ G + +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K
Sbjct: 61 VVLPPSRGGHD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV 119
Query: 231 --SNSQKSALNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLP 286
+S + L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+P
Sbjct: 120 PLPSSNGAPLLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVP 172
Query: 287 MLLPDGRIGYVLQQPGVQ--QHNPPPQ 311
M+LPDGR+ YV+QQPG Q +PPPQ
Sbjct: 173 MMLPDGRLVYVVQQPGGQLPLASPPPQ 199
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 145/233 (62%), Gaps = 55/233 (23%)
Query: 112 MSNPKFKLDDNAPTVSWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
MSNP FKLDDNAPTVSWA+ R+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229
KVVIPPAKPG+E SRYGFVH+AER+S M+ALKNTE+YEID
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDA------------------ 102
Query: 230 GSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 289
+ ++QP+++ G A GGM+M+P++L
Sbjct: 103 -----------------------------------SAYSQPLMHAGGHAAGGMSMMPIML 127
Query: 290 PDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
PDGRI YVLQQPG+ PP S GS SS ++S+DNGRGRSRYNPY
Sbjct: 128 PDGRIRYVLQQPGLAAMPQPPPRPSPPYRGGSGSSSSKQSSDNGRGRSRYNPY 180
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/176 (59%), Positives = 132/176 (75%), Gaps = 8/176 (4%)
Query: 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
VKALYVKN+P+++T ++LKELF HG++TKVV+PP K +R +GF+H+AERSSA+KA+
Sbjct: 359 VKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRD-FGFIHYAERSSALKAV 417
Query: 202 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG-MVGGAYGALGA 260
K TEKYEIDGQ L+ +AKPQA++K GG + L+P + PH GYG G YG++GA
Sbjct: 418 KETEKYEIDGQALEVVIAKPQAEKKPDGGY-AYNPGLHPNHLPHPGYGNFSGNLYGSVGA 476
Query: 261 GYVPAGFA---QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPR 313
GY A A QPM+YGRG P GM M+PM+LPDGRIGYVLQQPGVQ P P+PR
Sbjct: 477 GYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQV--PGPRPR 530
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 118/143 (82%), Gaps = 2/143 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K +++GE+KGYAFV ++TKE+A +AI+++++ E KGK ++C ++ KHRLFIGN+P+ W
Sbjct: 136 IKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTW 195
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
ED+ RKAV +GPGV SI+L+KDPQN ++NRGFAF+ YYN+ACA++SRQKMS+ FKLD
Sbjct: 196 TEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLD 255
Query: 121 DNAPTVSWADPRNA--ESSAASQ 141
PTV+WADP+ + +S+AASQ
Sbjct: 256 GITPTVTWADPKTSPDQSAAASQ 278
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 92/196 (46%), Gaps = 19/196 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ +DD+R+ +G ++ I+L+KD + +++G+AF+ Y A+ +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMG-DIVEIKLIKD-RETGESKGYAFVGYKTKEVAQKAID 163
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
+ N +FK +S R L++ N+PK T+D ++ G +
Sbjct: 164 DIHNKEFKGKTLRCLLSETKHR------------LFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 170 TKVVIPPAKPGQERSR-YGFVHFAERSSA--MKALKNTEKYEIDGQVLDCSLAKPQAD-Q 225
+ + Q R+R + FV + + A + ++ +++DG + A P+
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 226 KTSGGSNSQKSALNPT 241
+++ S ++A+ P
Sbjct: 272 QSAAASQFYRTAVQPV 287
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 140/219 (63%), Gaps = 6/219 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELK---GKKIKCSAAQAKHRLFIGNVPRNWGEDDMR 66
+G+ FV F+T+ A+ A+E+L +L G+ ++ + +Q+KH+L++GN+PR+ +D ++
Sbjct: 119 RGFGFVKFKTRAAATDALEKLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLK 178
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
+ + GV IEL+ + NRGFAFIE+YNHACA+ ++ +S P + + + V
Sbjct: 179 AELDAVVKGVEVIELLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNV 238
Query: 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 186
++A+P+ A+ QVK++YV NLP + +LKELF G++TKVVIPP++P + +
Sbjct: 239 AYAEPKGADQVPTQQVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREF 298
Query: 187 GFVHFAERSSAMKALKNTE---KYEIDGQVLDCSLAKPQ 222
GFVHF+ERS K +++ E K +D L+ +AKPQ
Sbjct: 299 GFVHFSERSVVEKLVQDAEKGTKPSLDSNTLEVKMAKPQ 337
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 23/185 (12%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+F+G +PR+ ED ++ +G V ++ L+KDPQN QNRGF F+++ A A +
Sbjct: 78 EVFVGGIPRSATEDQLKVFAEAMGE-VHAVVLLKDPQNNEQNRGFGFVKFKTRAAATDAL 136
Query: 110 QKMSNPKFKLDDNAPTVSWAD-PRNAESSAASQVK-ALYVKNLPKDITQDRLK---ELFA 164
+K++ + AD P A SQ K LYV N+P+D+++D LK +
Sbjct: 137 EKLAGKQL-----------ADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAVV 185
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN---TEKYEIDGQVLDCSLAKP 221
++ ++++ PG R + F+ F + A A KN Y + G+ L+ + A+P
Sbjct: 186 KGVEVIELLMSKEYPGNNRG-FAFIEFYNHACAQLA-KNALSAPTYTMHGRSLNVAYAEP 243
Query: 222 Q-ADQ 225
+ ADQ
Sbjct: 244 KGADQ 248
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 141/224 (62%), Gaps = 3/224 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K +GE+KGYAF+TF K A+E++++ ELKGK ++ ++ + +LF+GN+P+ +
Sbjct: 79 MKNKLNGESKGYAFITFEDKSSCQMAVEKISNKELKGKSLRVKYSENRRKLFLGNLPKEF 138
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
++ + + + K G+ S++ + DP N +NRGFAF+E+ ++ A+ +R++ ++P F++
Sbjct: 139 NKEQLLEILNKHTEGITSMDFLMDPDNPTRNRGFAFVEFSDYYLADKARKEFASPSFRIG 198
Query: 121 DNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ TV+WADP + + V+ LYV+NLP+ + LK++F G I KV+IP P
Sbjct: 199 SSCVTVNWADPVQEPDEDVMKNVRVLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIP 258
Query: 180 GQERSRYGFVHFAERSSAMKAL--KNTEKYEIDGQVLDCSLAKP 221
GQ+R +GFVHF R +A +AL N + G+ L S AKP
Sbjct: 259 GQQRRDFGFVHFESREAAEEALVRHNNQPITYQGRDLIVSFAKP 302
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
A++ +F+G V +N EDD++ +G V I L+K+ N +++G+AFI + + + +
Sbjct: 45 AENEVFVGGVSKNVTEDDLQSVFNSVG-SVRQIRLMKNKLNG-ESKGYAFITFEDKSSCQ 102
Query: 107 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ +K+SN + K + V +++ R + L++ NLPK+ +++L E+ H
Sbjct: 103 MAVEKISNKELK--GKSLRVKYSENR----------RKLFLGNLPKEFNKEQLLEILNKH 150
Query: 167 GK-ITKV--VIPPAKPGQERSRYGFVHFAERSSAMKALK 202
+ IT + ++ P P + R + FV F++ A KA K
Sbjct: 151 TEGITSMDFLMDPDNPTRNRG-FAFVEFSDYYLADKARK 188
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 138/224 (61%), Gaps = 3/224 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK + +GE KGY FV+F K +A+ + N+ E KGK ++ ++ K ++FIGN+P+
Sbjct: 144 MKDRSNGENKGYGFVSFANKSNCKEAVVQFNNKEFKGKNLRVKFSENKRKIFIGNLPKEL 203
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+D + + G+ +++ + DP N+++NRGFAFIEY ++ AE +R++ S P FK+
Sbjct: 204 KKDQLLLILADHSDGITNVDFLTDPDNSSRNRGFAFIEYTDYYQAEKARKEFSQPNFKIG 263
Query: 121 DNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ TV+WADP + + + +QV+ LY++NLP +++++++LF +G I KV+IP P
Sbjct: 264 NCNVTVNWADPIQEPDETIMNQVRVLYIRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLP 323
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEI--DGQVLDCSLAKP 221
GQ+R +GFVHFA R A L I G+ L S AKP
Sbjct: 324 GQQRRDFGFVHFANRDEAEATLARHHDTPITYQGRPLSLSFAKP 367
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V + ++ T++ L++LF+ G + +V I + E YGFV FA +S+ +A+
Sbjct: 114 VFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVVQF 173
Query: 205 EKYEIDGQVLDCSLAK 220
E G+ L ++
Sbjct: 174 NNKEFKGKNLRVKFSE 189
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 134/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+TF +E A QA+ ELN E+ KGKKI + + HRLF+GN+P+N DD
Sbjct: 200 AGCNRGYAFITFTNREAAQQAVRELNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDD 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + TK PG+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 260 LFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 319
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYVKNL +D ++++LKE F +G I +V ++
Sbjct: 320 IVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKI 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER +A+KA+ EI G ++ SLAKP +D+K
Sbjct: 372 KDYAFVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 138/223 (61%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +++ AS A+ ELN E++ GKKI + + HRLF+GN+P+N D+
Sbjct: 205 TGTNRGYAFVTFTSRDAASNAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDE 264
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K PG++ + + P + +NRGF F+EY +H A +++++ + K+ +
Sbjct: 265 LLEEFAKHAPGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDI 324
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D ++++LKE F G++ +V ++
Sbjct: 325 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKI 376
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF +R +A+KA+K+ + E+ G ++ SLAKP +D+K
Sbjct: 377 KDYAFVHFEDRDNAVKAMKDLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 136/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVT+ TKE A +A EL+ E+K GK IK + + RLFIGN+P++ G++D
Sbjct: 196 SGTNRGYAFVTYTTKEEAERATVELDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKED 255
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + KI G+ + + P + +NRGF F+EY +H A +++++S P +K+
Sbjct: 256 IMEEFGKITSGLTEVIIYSSPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDI 315
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +++T++RLKE F HG + +V ++
Sbjct: 316 IVDWADPQEEPDDETMSKVKVLYVRNLTQEVTENRLKETFEVHGSVERV--------KKI 367
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R A+KAL+ +DG L+ SLAKP +D+K
Sbjct: 368 KDYAFIHFNDRGCALKALEELNGSNLDGATLEVSLAKPPSDKK 410
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 137/229 (59%), Gaps = 5/229 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +GE+KGYAFV F + + A A+++++ LKG+K+ + LF+G++ ++W
Sbjct: 433 MKDATTGESKGYAFVRFTSPKFAKLAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDW 492
Query: 61 GEDDMRKAV--TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+DD+ + + KI GV +I L+KD N +NRGFAF+E+ +H A + K+ P F+
Sbjct: 493 RQDDLDQHLRDAKIK-GVTTITLMKDTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFR 551
Query: 119 LDDNAPTVSWADPRNAESSAA-SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
L D V WA+P N S S+VK++YV NLP D+ D ++ LFA G+I ++V+
Sbjct: 552 LADVDVKVDWAEPLNEPSEEVMSKVKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKN 611
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKPQADQ 225
R + FV++ ERS+A+ A+ Y++ D VLD +LAKP +Q
Sbjct: 612 LKSARRDDFAFVNYTERSAALAAIDARHGYKVDDDHVLDVTLAKPVTEQ 660
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +LN E++ GKKI + + HRLF+GN+P+N D+
Sbjct: 243 TGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDE 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K PG+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 303 LIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 362
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 363 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 415 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +LN E++ GKKI + + HRLF+GN+P+N D+
Sbjct: 235 TGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K PG+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 295 LIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 354
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 355 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 406
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 407 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +LN E+ KGKKI + + HRLF+GN+P+N D+
Sbjct: 204 TGTNRGYAFVTFTNREAAINAVRQLNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K PG+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 264 LIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+T+D+LKE F +GK+ +V ++
Sbjct: 324 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ E+ ++ SLAKP +D+K
Sbjct: 376 KDYAFIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 137/223 (61%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+TF ++ A ++ EL++ E+ KGK I + + HRLF+GN+P+N G+++
Sbjct: 204 SGLNRGYAFITFCNRDGAHNSVRELDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K PG+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 264 LYEEFSKHAPGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + ++VK LYV+NL D+T++RLKELF HG++ +V ++
Sbjct: 324 IVDWADPQEEPDQETMAKVKVLYVRNLTADVTEERLKELFEQHGRVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER A+KA+ + ++ G ++ SLAKP +D+K
Sbjct: 376 KDYAFVHFEERDHAVKAMNQLQGKDLCGAPMEVSLAKPPSDKK 418
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +P++ ED++ K G + + L+ DP + NRG+AFI + N A S +
Sbjct: 169 VFVGKIPKDMFEDELIPLFEKCG-RIWDLRLMMDPLSG-LNRGYAFITFCNRDGAHNSVR 226
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
++ N + + T+S + R L+V N+PK+ ++ L E F+ H
Sbjct: 227 ELDNYEIRKGKYIGVTISINNHR------------LFVGNIPKNRGKEELYEEFSKHAPG 274
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+T+V+I + ++++R + F+ + +A A + I +V C + AD
Sbjct: 275 LTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRI--KVWSCDIIVDWAD 329
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +LN E++ GKKI + + HRLF+GN+P+N D+
Sbjct: 201 TGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K PG+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 LIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 138/223 (61%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+TF +E A ++ EL++ E+ KGK I + + HRLF+GN+P+N G+++
Sbjct: 197 SGLNRGYAFITFCNREGAHNSVRELDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEE 256
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K PG+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 257 LFEEFSKHAPGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDI 316
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + ++VK LYV+NL D+T+++LKELF HG++ +V ++
Sbjct: 317 IVDWADPQEEPDEETMAKVKVLYVRNLTTDVTEEKLKELFEAHGRVERV--------KKI 368
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER A++A++ + ++ G ++ SLAKP +D+K
Sbjct: 369 KDYAFVHFEERDHAVRAMEQLQGKDLCGAPMEVSLAKPPSDKK 411
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +P++ ED++ K G + + L+ DP + NRG+AFI + N A S +
Sbjct: 162 VFVGKIPKDMFEDELIPLFEKCGK-IWDLRLMMDPLSG-LNRGYAFITFCNREGAHNSVR 219
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
++ N + + T+S + R L+V N+PK+ ++ L E F+ H
Sbjct: 220 ELDNHEIRKGKYIGVTISINNHR------------LFVGNIPKNRGKEELFEEFSKHAPG 267
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+T+V+I + ++++R + F+ + +A A + I +V C + AD
Sbjct: 268 LTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRI--KVWSCDIIVDWAD 322
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 110/212 (51%), Gaps = 86/212 (40%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ K+ G+ KGY FVTFR K+LA++AI+ LN+
Sbjct: 108 MREKEPGDGKGYPFVTFRCKDLAAEAIDNLNNT--------------------------- 140
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ ++PQN +NRGFAFIEYYNH
Sbjct: 141 --------------------VFREPQNMGRNRGFAFIEYYNH------------------ 162
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
VKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAKPG
Sbjct: 163 ---------------------VKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPG 201
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
+E SRYGFVH+AER+S M+ALKNTE+YEIDG
Sbjct: 202 KEDSRYGFVHYAERTSVMRALKNTERYEIDGH 233
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 276 GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRG 335
G A GGM+M+P++LPDGRI YVLQQPG+ PP S GS SS ++S+DNGRG
Sbjct: 232 GHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRPSPPYRGGSGSSSSKQSSDNGRG 291
Query: 336 RSRYNPY 342
RSRYNPY
Sbjct: 292 RSRYNPY 298
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 137/223 (61%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+TF +E A QA++EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 200 AGCNRGYAFITFTNREAAQQAVKELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEE 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 260 ILEEFGKLTAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 319
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYVKNL +D ++++LKE+F +G I +V ++
Sbjct: 320 IVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKEVFEQYGNIERV--------KKI 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER +A+KA+ EI G ++ SLAKP +D+K
Sbjct: 372 KDYAFVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF T++ A QA+++L++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 214 TGTNRGYAFVTFTTRDAAQQAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEE 273
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G++ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 274 ILEEFGKLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 333
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL ++I++++LKE F +GK+ +V ++
Sbjct: 334 IVDWADPQEEPDEQTMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKI 385
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R +A+KA++ + E+ G ++ SLAKP +D+K
Sbjct: 386 KDYAFIHFEDRENAVKAMEELDGKEMGGSNIEVSLAKPPSDKK 428
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 136/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+TF +E A QA+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 197 SGSNRGYAFITFTNREAAQQAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE 256
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 257 ILEEFGKLTAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 316
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYV+NL +D ++++LKE F +GKI +V ++
Sbjct: 317 IVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKI 368
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R +A+KA+ E+ G ++ SLAKP +D+K
Sbjct: 369 KDYAFIHFEDRDNAVKAMNELNGKEMGGSHIEVSLAKPPSDKK 411
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E ++ +PKD+ +D L LF GKI ++++ P G R Y F
Sbjct: 148 PPNWEGPTPGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMS-GSNRG-YAF 205
Query: 189 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 221
+ F R +A +A++ + +EI G+ L +++ P
Sbjct: 206 ITFTNREAAQQAVRELDNHEIKPGKSLKVNISVP 239
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+TF +E A QA+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 200 AGCNRGYAFITFTNREAAQQAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEE 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 260 ILEEFGKLTAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 319
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYVKNL +D ++++LKE F +G I +V ++
Sbjct: 320 IVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKI 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER +A+KA+ EI G ++ SLAKP +D+K
Sbjct: 372 KDYAFVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+TF +E A QA+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 200 AGCNRGYAFITFTNREAAQQAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEE 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 260 ILEEFGKLTAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 319
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYVKNL +D ++++LKE F +G I +V ++
Sbjct: 320 IVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKI 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER +A+KA+ EI G ++ SLAKP +D+K
Sbjct: 372 KDYAFVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 138/223 (61%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +++ AS A+ ELN+ E+K G +K + + RLF+GN+P++ G+++
Sbjct: 205 TGTNRGYAFVTFTSRDAASNAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEE 264
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K+ G++ + + P + +NRGF F+EY +H A +++++ + K+ +
Sbjct: 265 ILDEFGKLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDI 324
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D ++++LKE F G++ +V ++
Sbjct: 325 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKI 376
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF +R +A+KA+K+ + E+ G ++ SLAKP +D+K
Sbjct: 377 KDYAFVHFEDRDNAVKAMKDLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|388514909|gb|AFK45516.1| unknown [Lotus japonicus]
Length = 150
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 117/150 (78%), Gaps = 5/150 (3%)
Query: 198 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGA 257
MKALKNTEKYEIDG+ L+CSLAKPQADQ++SG SNSQK + PTYP LGYGMVGGAYG
Sbjct: 1 MKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGG 60
Query: 258 LGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPG-----VQQHNPPPQP 312
+GAGY AGFAQP++YG GA P GM M+PMLLPDGRIGYV+QQPG +QQH P P
Sbjct: 61 IGAGYGAAGFAQPLMYGMGANPAGMPMMPMLLPDGRIGYVVQQPGLQQPSLQQHAPSPVS 120
Query: 313 RSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 342
R GR G SSSGG+R DN RG RYNPY
Sbjct: 121 RHGRRSGGGSSSGGKRGNDNNRGHRRYNPY 150
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 138/223 (61%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAFVTF +KE A A+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 214 TGQNRGYAFVTFTSKEAAQNAVRELDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEE 273
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 274 IMEEFSKLAAGLTKVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDI 333
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ ++ S+VK LYV+NL +D ++++LKE F +GKI +V ++
Sbjct: 334 IVDWADPQEEPDAETMSKVKVLYVRNLTQDCSEEKLKESFEVYGKIDRV--------KKI 385
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R +A+KAL ++ G ++ SLAKP +D+K
Sbjct: 386 KDYAFIHFEDRDNAIKALNELNGKDLAGACIEVSLAKPPSDKK 428
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+TF +E A QA+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 191 SGSNRGYAFITFTNREAAQQAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE 250
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K+ G+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 251 ILDEFGKLTAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 310
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYV+NL +D ++++LKE F +GKI +V ++
Sbjct: 311 IVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKI 362
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R +A++A+ E+ G ++ SLAKP +D+K
Sbjct: 363 KDYAFIHFEDRDNAVRAMNELNGKEMGGSHIEVSLAKPPSDKK 405
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E ++ +PKD+ +D L LF GKI ++++ P G R Y F
Sbjct: 142 PPNWEGPTPGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMS-GSNRG-YAF 199
Query: 189 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 221
+ F R +A +A++ + +EI G+ L +++ P
Sbjct: 200 ITFTNREAAQQAVRELDNHEIKPGKSLKVNISVP 233
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 260 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 319
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 320 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDI 379
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+T+D+LKE F +GK+ +V ++
Sbjct: 380 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKI 431
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ E+ ++ SLAKP +D+K
Sbjct: 432 KDYAFIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAKPPSDKK 474
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E + ++ +PKD+ +D L LF + G I ++++ P G R Y F
Sbjct: 211 PPNWEGNVPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMT-GTNRG-YAF 268
Query: 189 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 221
V F R +A+ A++ + +EI G+ L +++ P
Sbjct: 269 VTFTNREAAVNAVRQLDNHEIKPGKCLKINISVP 302
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 239 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 298
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 299 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 358
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 359 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 410
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 411 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 453
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 204 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 264 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 324 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEHFEQYGKVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 376 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 201 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 243 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 303 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 362
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 363 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 415 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 243 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 303 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 362
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 363 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 415 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 235 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 295 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 354
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 355 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 406
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 407 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 243 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 303 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 362
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 363 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 415 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 201 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 135/224 (60%), Gaps = 11/224 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+TF K+ A +A+ ++ E+ KGK I + + HRLF+GN+P+N G D+
Sbjct: 210 TGLNRGYAFITFCEKQGAQEAVNMFDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDE 269
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + TK PG+ + + P + +NRGF F+EY +H A +++++S + K+
Sbjct: 270 LLEEFTKHAPGLTDVIIYTSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDI 329
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHH-GKITKVVIPPAKPGQE 182
V WADP+ +S S+VK LYV+NL +++T+++LKE+F G++ +V ++
Sbjct: 330 IVDWADPQEEPDSETMSKVKVLYVRNLTQEVTEEKLKEVFEEFGGRVERV--------KK 381
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF +R A++AL+ E G ++ SLAKP +D+K
Sbjct: 382 IRDYAFVHFEDREDALRALEKNNNREAGGAPMEVSLAKPPSDKK 425
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +P++ ED++ K G + + L+ DP NRG+AFI + A+ +
Sbjct: 175 VFVGKIPKDMFEDELIPLFEKCG-KIYDLRLMMDPLTG-LNRGYAFITFCEKQGAQEAVN 232
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
N + + + T+S + R L+V N+PK+ +D L E F H
Sbjct: 233 MFDNHEIRKGKHIGVTISINNHR------------LFVGNIPKNRGRDELLEEFTKHAPG 280
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQAD 224
+T V+I + ++++R + F+ + +A A + +T + ++ G + A PQ +
Sbjct: 281 LTDVIIYTSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEE 339
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 162 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 221
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 222 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 281
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 282 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 333
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 334 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 376
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 204 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 264 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+T+D+LKE F +GK+ +V ++
Sbjct: 324 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ E+ ++ SLAKP +D+K
Sbjct: 376 KDYAFIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAKPPSDKK 418
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E + ++ +PKD+ +D L LF + G I ++++ P G R Y F
Sbjct: 155 PPNWEGNVPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMT-GTNRG-YAF 212
Query: 189 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 221
V F R +A+ A++ + +EI G+ L +++ P
Sbjct: 213 VTFTNREAAVNAVRQLDNHEIKPGKCLKINISVP 246
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 206 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 265
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 266 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 325
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 326 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 377
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 378 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 204 TGTNRGYAFVTFTNRDAAINAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 264 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 324 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 376 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 418
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E + ++ +PKD+ +D L LF + G I ++++ P G R Y F
Sbjct: 155 PPNWEGNVPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMT-GTNRG-YAF 212
Query: 189 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 221
V F R +A+ A++ + +EI G+ L +++ P
Sbjct: 213 VTFTNRDAAINAVRQLDNHEIKPGKCLKINISVP 246
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 243 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 303 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 362
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 363 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 415 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 235 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 295 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 354
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 355 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 406
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 407 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 134/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+TF ++ A QA+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 201 TGTNRGYAFITFTNRDAAQQAVRELDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 ILDEFGKLTAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+V+ LYV+NL +D ++++LKE F +GKI +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKECFEQYGKIERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER A+KA++ E+ G ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEERECAVKAMRELNGKEMGGSHIEVSLAKPPSDKK 415
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
++ +PKD+ +D L LF GKI ++++ P G R Y F+ F R +A +A++
Sbjct: 166 VFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPM-TGTNRG-YAFITFTNRDAAQQAVR 223
Query: 203 NTEKYEID-GQVLDCSLAKP 221
+ YEI G+ L +++ P
Sbjct: 224 ELDNYEIKPGKSLKVNISVP 243
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKA 68
+GYAFVTF T E A +A+ +LN E+K G+ +K + + RLF+GN+P++ G ++ +
Sbjct: 216 RGYAFVTFTTTEAAQEAVNQLNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEE 275
Query: 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128
+K+ G+ + + P + +NRGF F+EY +H A +++++S + K+ V W
Sbjct: 276 FSKVTAGLAEVIIYSSPDDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDW 335
Query: 129 ADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
ADP+ ++ S+VK LYV+NL ++ T+++LKE F HG I +V ++ Y
Sbjct: 336 ADPQEEPDNDTMSRVKVLYVRNLTQEFTEEKLKEAFEAHGPIQRV--------KKIKDYA 387
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
FVHF ER A++A+ + + G L+ SLAKP +D+K
Sbjct: 388 FVHFEERDDAVQAMDALNGHTLYGANLEVSLAKPPSDRK 426
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 17/178 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F G +PR+ ED++ K G + + L+ DP N NRG+AF+ + A+ +
Sbjct: 177 VFCGKIPRDVYEDELIPLFEKCGT-IWDLRLMMDPLT-NLNRGYAFVTFTTTEAAQEAVN 234
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++++ + K R+ + + + L+V N+PK + E F+
Sbjct: 235 QLNDLEMK-----------GGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKVTAGL 283
Query: 171 KVVIPPAKPGQERSRYGFVHFA----ERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
VI + P R GF + +S K +T + +I G + A PQ +
Sbjct: 284 AEVIIYSSPDDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQEE 341
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 201 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 206 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 265
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 266 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 325
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 326 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 377
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 378 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 243 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 303 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 362
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 363 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 415 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 204 TGTNRGYAFVTFTNRDAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 264 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+T+++LKE F +GK+ +V ++
Sbjct: 324 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 376 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 235 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 295 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 354
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 355 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 406
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 407 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 201 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 260
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 261 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 320
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 321 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 372
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 373 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 141/226 (62%), Gaps = 13/226 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF T++ A QA+++L++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 214 TGTNRGYAFVTFTTRDAAQQAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEE 273
Query: 65 MRKAVTKIG---PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + K+ G++ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 274 ILEEFGKLTGYTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWG 333
Query: 122 NAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V WADP+ + S+VK LYV+NL ++I++++LKE F +GK+ +V
Sbjct: 334 CDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV-------- 385
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
++ Y F+HF +R +A+KA++ + E+ G ++ SLAKP +D+K
Sbjct: 386 KKIKDYAFIHFEDRENAVKAMEELDGKEMGGSNIEVSLAKPPSDKK 431
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +++ AS A+ EL++ E+K GK +K + + RLF+GN+P++ G+++
Sbjct: 167 TGTNRGYAFVTFTSRDAASNAVRELDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEE 226
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K+ G++ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 227 ILDEFGKLTAGLMEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 286
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D ++++LKE F GK+ +V ++
Sbjct: 287 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEQFGKVERV--------KKI 338
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R A+ A+K + ++ G L+ SLAKP +D+K
Sbjct: 339 KDYAFIHFEDRDHAVNAMKELDGKDLGGSNLEVSLAKPPSDKK 381
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E ++ +PKD+ +D L LF GKI ++++ P G R Y F
Sbjct: 118 PPNWEGGTPGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMT-GTNRG-YAF 175
Query: 189 VHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKP 221
V F R +A A++ + YEI G+ L +++ P
Sbjct: 176 VTFTSRDAASNAVRELDNYEIKSGKCLKINVSVP 209
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 57/270 (21%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK----------------------------- 36
SG +GYAF+TF +E A QA+ EL++ E+K
Sbjct: 197 SGSNRGYAFITFTNREAAQQAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE 256
Query: 37 -------------------GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
GKKI + + HRLF+GN+P+N DD+ + TK PG+
Sbjct: 257 ILEEFGKLTGKLNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLT 316
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ES 136
+ + P + +NRGF F+EY +H A +++++S + K+ V WADP+ +
Sbjct: 317 EVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDE 376
Query: 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196
S+V+ LYV+NL +D ++++LKE F +GKI +V ++ Y F+HF +R +
Sbjct: 377 QTMSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDN 428
Query: 197 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
A+KA+ E+ G ++ SLAKP +D+K
Sbjct: 429 AVKAMNELNGKEMGGSHIEVSLAKPPSDKK 458
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 89/212 (41%), Gaps = 42/212 (19%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F G +P++ ED++ K G + + L+ DP + + NRG+AFI + N A+ + +
Sbjct: 162 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPMSGS-NRGYAFITFTNREAAQQAVR 219
Query: 111 KMSNPK------FKLDDNAPTVSWADPRNAESSAASQV---------------------- 142
++ N + K++ + P + +S ++
Sbjct: 220 ELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRKGKKI 279
Query: 143 --------KALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSR-YGFVHFA 192
L+V N+PK+ +D L E F H +T+V+I + ++++R + F+ +
Sbjct: 280 GVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCFLEYE 339
Query: 193 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+A A + I +V C + AD
Sbjct: 340 SHKAASLAKRRLSTGRI--KVWGCDIIVDWAD 369
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 188
P N E ++ +PKD+ +D L LF GKI ++++ P G R Y F
Sbjct: 148 PPNWEGPTPGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMS-GSNRG-YAF 205
Query: 189 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 221
+ F R +A +A++ + +EI G+ L +++ P
Sbjct: 206 ITFTNREAAQQAVRELDNHEIKPGKSLKVNISVP 239
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 204 TGTNRGYAFVTFTNRDAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 264 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 323
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+T+++LKE F +GK+ +V ++
Sbjct: 324 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKI 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF +R SA++A++ EI ++ SLAKP +D+K
Sbjct: 376 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 133/221 (60%), Gaps = 10/221 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF +E A A+ +L++ E+K GK +K + + RLF+GN+P++ G+D+
Sbjct: 271 TGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDE 330
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + + P + +NRGF F+EY +H A +++++ + K+
Sbjct: 331 ILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI 390
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP+ + S+VK LYV+NL +D+++D+LKE F +GK+ +V ++
Sbjct: 391 IVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKI 442
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
Y F+HF +R SA++A++ EI ++ SLAKP +D
Sbjct: 443 KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSD 483
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 11/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE A QA++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 198 SGLNRGYAFVTFCTKEAAQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 257
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 258 IVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLV 317
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ HGK+ +V ++
Sbjct: 318 TVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEEILEKTFSQHGKLERV--------KKL 369
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER SA+KAL + +++G+ ++ AKP DQK
Sbjct: 370 KDYAFIHFEERESAVKALTDLNGKDLEGEHIEIVFAKP-PDQK 411
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A+ + +
Sbjct: 163 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCTKEAAQQAVK 220
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T++++ E FA +
Sbjct: 221 LCNNNEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFAKVTEG 268
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G ++ A P D
Sbjct: 269 LNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIED 327
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 244 PHLGYGM 250
+ YG+
Sbjct: 430 DYYYYGL 436
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 244 PHLGYGM 250
+ YG+
Sbjct: 430 DYYYYGL 436
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 143/246 (58%), Gaps = 11/246 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF +KE A QA++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 SGLNRGYAFVTFCSKEAAQQAVKLCNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IIEEFSKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLASAVTEELLEKTFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER SA+KAL + +++G+ ++ AKP DQK +++A Y
Sbjct: 371 KDYAFIHFEERDSAVKALGDLNGKDLEGEHIEIVFAKP-PDQKRKERKAQRQAAKTQMYD 429
Query: 244 PHLGYG 249
+ YG
Sbjct: 430 EYYYYG 435
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + GP + + L+ DP + NRG+AF+ + + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFERAGP-IWDLRLMMDPLSG-LNRGYAFVTFCSKEAAQQAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LCNNSEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIIEEFSKVTEG 269
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 270 LNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 142/246 (57%), Gaps = 11/246 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 214 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 273
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 274 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 333
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 334 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKL 385
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KA++ E++G+ ++ AKP DQK +++A N Y
Sbjct: 386 KDYAFIHFDERVGAVKAMEEMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 444
Query: 244 PHLGYG 249
+ YG
Sbjct: 445 EYYYYG 450
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + L+ DP NRG+AF+ + A+ + +
Sbjct: 179 IFVGKIPRDLFEDELVPLFEKAG-SIWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 236
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 237 LYNNHEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 284
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 285 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 343
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 142/246 (57%), Gaps = 11/246 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 346 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 405
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 406 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 465
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 466 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKL 517
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KA++ E++G+ ++ AKP DQK +++A N Y
Sbjct: 518 KDYAFIHFDERVGAVKAMEEMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 576
Query: 244 PHLGYG 249
+ YG
Sbjct: 577 EYYYYG 582
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + L+ DP NRG+AF+ + A+ + +
Sbjct: 311 IFVGKIPRDLFEDELVPLFEKAG-SIWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 368
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 369 LYNNHEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 416
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 417 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 475
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 144/266 (54%), Gaps = 18/266 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ +D
Sbjct: 200 SGLNRGYAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQ 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 260 IVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 319
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 320 TVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKL 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KAL +++G+ ++ AKP DQK +++A Y
Sbjct: 372 KDYAFIHFEERDGAVKALAELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYD 430
Query: 243 ------PPHLGYGMVGGAYGALGAGY 262
PPH+ GA G Y
Sbjct: 431 EYYYYGPPHVHQPTRARGRGARGYSY 456
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A+ + +
Sbjct: 165 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCTKEAAQKAVK 222
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T+D++ E FA +
Sbjct: 223 LCNNNEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKDQIVEEFAKVTEG 270
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 271 LNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 329
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 143/240 (59%), Gaps = 18/240 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF +E A +A+++L++ E+ KGK + + A HRLF+G++P+ +D+
Sbjct: 211 SGLNRGYAFVTFCDREGAQEAVKQLDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDE 270
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA- 123
+ + K G+ + + P++ +NRGFAF+ + +H A +R+++ + + K+ N+
Sbjct: 271 ILEEFNKHVGGLTDVIIYHMPEDRKKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSN 330
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
TV WADP+ + ++VK LYV+NL D +++LKE F G + +V ++
Sbjct: 331 VTVDWADPQEEPDEETMAKVKVLYVRNLTPDAEEEKLKEAFQAFGTVERV--------KK 382
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD-------QKTSGGSNSQK 235
Y FVHF ER +A+KA++ E++G V+D SLAKP ++ Q+T GG +S +
Sbjct: 383 LKDYCFVHFEERDAAVKAMEELNGKEVEGSVVDISLAKPPSENKKKKERQQTRGGRSSNR 442
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
++F+G +PR+ ED++ K G + + L+ DP + NRG+AF+ + + A+ +
Sbjct: 174 EQVFVGKIPRDMFEDEIIPLFEKCGK-IWDLRLMMDPLSG-LNRGYAFVTFCDREGAQEA 231
Query: 109 RQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH- 166
+++ N + + + +S A+ R L+V ++PK ++D + E F H
Sbjct: 232 VKQLDNHEIRKGKHLGVCISVANHR------------LFVGSIPKTKSKDEILEEFNKHV 279
Query: 167 GKITKVVIPPAKPGQERSR-YGFVHFAERSSA 197
G +T V+I ++++R + F+HF +A
Sbjct: 280 GGLTDVIIYHMPEDRKKNRGFAFLHFESHKAA 311
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 124 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQ 181
P W P A S A QV +V +P+D+ +D + LF GKI ++++ P G
Sbjct: 160 PPPDWDGP--APSGDAEQV---FVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPL-SGL 213
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEI 209
R Y FV F +R A +A+K + +EI
Sbjct: 214 NRG-YAFVTFCDREGAQEAVKQLDNHEI 240
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 142/246 (57%), Gaps = 11/246 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE A QA++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 SGLNRGYAFVTFCTKEAAQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IIEEFSKVTEGLNDVILYLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPLEDPDPEVMAKVKVLFVRNLASSVTEELLEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KAL + +++G+ ++ AKP DQK +++A Y
Sbjct: 371 KDYAFIHFEERDGAVKALADLNGKDLEGEHIEIVFAKP-PDQKRKERKAQRQAAKTHMYD 429
Query: 244 PHLGYG 249
+ YG
Sbjct: 430 EYYYYG 435
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCTKEAAQQAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LCNNNEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIIEEFSKVTEG 269
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G ++ A P D
Sbjct: 270 LNDVILYLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLED 328
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 139/246 (56%), Gaps = 11/246 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ +D
Sbjct: 200 SGLNRGYAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQ 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 260 IVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 319
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 320 TVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKL 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KAL +++G+ ++ AKP DQK +++A Y
Sbjct: 372 KDYAFIHFEERDGAVKALAELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYD 430
Query: 244 PHLGYG 249
+ YG
Sbjct: 431 EYYYYG 436
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A+ + +
Sbjct: 165 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCTKEAAQKAVK 222
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T+D++ E FA +
Sbjct: 223 LCNNNEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKDQIVEEFAKVTEG 270
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 271 LNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 329
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 136/224 (60%), Gaps = 11/224 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GY F+TF K A +A+++L++ ++K GK IK + + A RLF+GN+P++ +D+
Sbjct: 198 TGFNRGYCFITFCDKPGALEAVKQLDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDE 257
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQ-NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + +K + + + + + NQ NRGFAF+EY +H A +++K+S+ + K+
Sbjct: 258 IMEEFSKKTEDLTDVIIYRSAEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCD 317
Query: 124 PTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WADP + +S S+VK LYV+NL D+T+D LKE F +GK+ +V ++
Sbjct: 318 VIVDWADPIDDPDSDTMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERV--------KK 369
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
YGF+HF ER A+KA++ ++ ++ SLAKP ++ K
Sbjct: 370 IKDYGFIHFEERDDAVKAMEGMNGQKLGKLEMEVSLAKPPSENK 413
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 130 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYG 187
D RNA S + ++ +PKD+ +D L LF GKI ++++ P G R Y
Sbjct: 153 DERNAPSGSE-----VFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPM-TGFNRG-YC 205
Query: 188 FVHFAERSSAMKALKNTEKYEI 209
F+ F ++ A++A+K + Y+I
Sbjct: 206 FITFCDKPGALEAVKQLDNYQI 227
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ ++ E++ GK I + A +RLF+G++P+N +++
Sbjct: 104 SGQNRGYAFITFCNKEAAQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKEN 163
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 164 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 223
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 224 TVEWADPVEEPDPEIMAKVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKL 275
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A++A+ E++G+ ++ LAKP
Sbjct: 276 KDYAFVHFDERDAAVRAMDEMNGTELEGEEIEIVLAKP 313
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + N A+ + +
Sbjct: 69 VFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCNKEAAQEAVK 126
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 127 LCDNYEIRPGKHIGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 174
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P
Sbjct: 175 LVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP 230
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 101 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 273 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 331
Query: 243 ------PPHL 246
PPH+
Sbjct: 332 DYYYYGPPHM 341
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 66 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 124 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 171
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 172 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 101 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 273 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 331
Query: 243 ------PPHL 246
PPH+
Sbjct: 332 DYYYYGPPHM 341
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 66 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 124 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 171
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 172 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ ++ E++ GK I + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCNKEAAQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPVEEPDPEIMAKVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A++A+ E++G+ ++ LAKP
Sbjct: 273 KDYAFVHFDERDAAVRAMDEMNGTELEGEEIEIVLAKP 310
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + N A+ + +
Sbjct: 66 VFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCNKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDNYEIRPGKHIGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 171
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P
Sbjct: 172 LVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP 227
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ ++ E++ GK I + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCNKEAAQEAVKLCDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLLDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPVEEPDPEIMAKVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A++A+ E++G+ ++ LAKP
Sbjct: 273 KDYAFVHFDERDAAVRAMDEMNGAELEGEEIEIVLAKP 310
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + N A+ + +
Sbjct: 66 VFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCNKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDNYEIRTGKHIGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 171
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P
Sbjct: 172 LLDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP 227
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 47 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 106
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 107 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 166
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 167 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 218
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 219 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 277
Query: 243 ------PPHL 246
PPH+
Sbjct: 278 DYYYYGPPHM 287
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 68
Query: 110 QKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 69 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 116
Query: 169 -ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 117 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 47 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 106
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 107 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 166
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 167 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 218
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 219 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 277
Query: 243 ------PPHL 246
PPH+
Sbjct: 278 DYYYYGPPHM 287
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 68
Query: 110 QKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 69 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 116
Query: 169 -ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 117 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 47 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 106
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 107 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 166
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 167 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 218
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 219 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 277
Query: 243 ------PPHL 246
PPH+
Sbjct: 278 DYYYYGPPHM 287
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 68
Query: 110 QKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 69 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 116
Query: 169 -ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 117 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 171 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 230
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 231 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 290
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 291 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 342
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 343 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 401
Query: 243 ------PPHL 246
PPH+
Sbjct: 402 DYYYYGPPHM 411
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 136 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 193
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 194 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 241
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 242 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 300
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAG-SIWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 89/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 214 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 273
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 274 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 333
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 334 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 385
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 386 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 444
Query: 243 ------PPHL 246
PPH+
Sbjct: 445 DYYYYGPPHM 454
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 179 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 236
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 237 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 284
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 285 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 343
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 2/226 (0%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ +G +KGYAFV + A A ++L+ + G+ + +Q LF+G++ ++W
Sbjct: 298 MRDPKTGASKGYAFVRYMEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDW 357
Query: 61 GEDDMRKAVTKIGP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + + + G GV I DP N +NRGF FIE+ +H A + KM+ F+L
Sbjct: 358 SLEQLEAHLKEAGIRGVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRL 417
Query: 120 DDNAPTVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V WA+P N SQVK++YV NLP ++ + + LF +GKI ++V+
Sbjct: 418 SGQKVRVDWAEPLNEPGEDVMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNL 477
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
P R + FV++ ER++A+KA+ +E+ G+ L +LAKP D
Sbjct: 478 PTARRKDFAFVNYEERANALKAIDGKHGFEVQGRTLQVTLAKPVDD 523
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 196 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 255
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 256 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 315
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 316 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 367
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 368 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 426
Query: 243 ------PPHL 246
PPH+
Sbjct: 427 DYYYYGPPHM 436
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 161 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 218
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 219 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 266
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 267 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 325
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 109 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 169 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 228
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 229 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 280
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 339
Query: 243 ------PPHL 246
PPH+
Sbjct: 340 DYYYYGPPHM 349
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 131
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 132 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 179
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 180 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 238
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 250 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 309
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 310 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 369
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 370 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 421
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 422 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 480
Query: 243 ------PPHL 246
PPH+
Sbjct: 481 DYYYYGPPHM 490
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 215 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 272
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 273 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 320
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 321 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 379
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 214 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 273
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 274 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 333
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 334 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 385
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 386 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 444
Query: 243 ------PPHL 246
PPH+
Sbjct: 445 DYYYYGPPHM 454
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 179 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 236
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 237 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 284
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 285 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 343
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 272 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 331
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 332 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 391
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 392 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 443
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 444 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 502
Query: 243 ------PPHL 246
PPH+
Sbjct: 503 DYYYYGPPHM 512
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 237 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 294
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 295 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 342
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 343 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 401
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 143/266 (53%), Gaps = 18/266 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ +D
Sbjct: 200 SGLNRGYAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQ 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+ Y +H A +R+++ + K K+ N
Sbjct: 260 IVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVV 319
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 320 TVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKL 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KAL +++G+ ++ AKP DQK +++A Y
Sbjct: 372 KDYAFIHFEERDGAVKALAELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYD 430
Query: 243 ------PPHLGYGMVGGAYGALGAGY 262
PPH+ GA G Y
Sbjct: 431 EYYYYGPPHVHQPTRARGRGARGYSY 456
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A+ + +
Sbjct: 165 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCTKEAAQKAVK 222
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T+D++ E FA +
Sbjct: 223 LCNNNEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKDQIVEEFAKVTEG 270
Query: 170 TKVVIPPAKPGQERSRYGFVH--FAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ GF + + +A +A + + K ++ G V+ A P D
Sbjct: 271 LNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 329
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAG-SIWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLTMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 235 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 294
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 295 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 354
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 355 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 406
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 407 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 465
Query: 243 ------PPHL 246
PPH+
Sbjct: 466 DYYYYGPPHM 475
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 200 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 257
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 258 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 305
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 306 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 364
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 301 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 360
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 361 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 420
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 421 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 472
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 473 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 531
Query: 243 ------PPHL 246
PPH+
Sbjct: 532 DYYYYGPPHM 541
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 266 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 323
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 324 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 371
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 372 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 430
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 137/223 (61%), Gaps = 11/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF +KE A +A++ N+ E++ GK+I + A +RLF+G++P++ ++
Sbjct: 199 SGLNRGYAFVTFCSKEAAQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L PQ+ ++NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IVEEFSKVTEGLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ +G + +V ++
Sbjct: 319 TVEWADPMEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFSEYGNLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER A+KAL+ E++G+ ++ AKP DQK
Sbjct: 371 KDYAFIHFEERDGAVKALEELNGKELEGEPIEIVFAKP-PDQK 412
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCSKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LCNNHEIRPGKQIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 269
Query: 170 TKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P Q++S+ + F+ + + +A +A + + K ++ G ++ A P D
Sbjct: 270 LSDVILYLQP-QDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMED 328
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 109 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 169 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 228
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 229 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 280
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 339
Query: 243 ------PPHL 246
PPH+
Sbjct: 340 DYYYYGPPHM 349
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 131
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 132 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 179
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 180 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 238
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 243 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 302
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 303 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 362
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 363 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 414
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 415 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 473
Query: 243 ------PPHL 246
PPH+
Sbjct: 474 DYYYYGPPHM 483
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 208 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 265
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 266 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 313
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 314 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 372
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 196 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 255
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 256 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 315
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 316 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 367
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 368 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 426
Query: 243 ------PPHL 246
PPH+
Sbjct: 427 DYYYYGPPHM 436
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 161 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 218
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 219 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 266
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 267 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 325
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 134 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 193
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 194 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 253
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 254 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 305
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 306 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 364
Query: 243 ------PPHL 246
PPH+
Sbjct: 365 DYYYYGPPHM 374
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 99 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 156
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 157 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 204
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 205 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 263
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 139/237 (58%), Gaps = 11/237 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG KG+AF TF K+ A A+++L++ E++ GK++ + A RLF+G++P+ + +
Sbjct: 189 SGLTKGFAFCTFSNKDEAQNAVKKLDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQE 248
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-A 123
+ + +K+ G+ + + +NRGFAF+EY +H A +R+++++ + K+ N
Sbjct: 249 ILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIV 308
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
TV WADP+ + A +VK +Y++NL IT+++LKE ++ +G + +V ++
Sbjct: 309 VTVDWADPQEEPDDDAMKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRV--------KK 360
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 239
Y FVHF ER A+KA++ T+ E+DG ++ SLAKPQ K S +LN
Sbjct: 361 LKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLAKPQPGNKDRQRGQSGFGSLN 417
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 139/243 (57%), Gaps = 10/243 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 101 TGLNRGYAFVTFCTKEAAQEAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KA++ +++G+ ++ AKP ++ + Q + T
Sbjct: 273 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGMMITTIM 332
Query: 244 PHL 246
HL
Sbjct: 333 VHL 335
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 66 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 123
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 124 RYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 171
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + K ++ G V A P D
Sbjct: 172 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 137/223 (61%), Gaps = 11/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF +KE A +A++ N+ E++ GK+I + A +RLF+G++P++ ++
Sbjct: 203 SGLNRGYAFVTFCSKEAAQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQ 262
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L PQ+ ++NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 263 IVEEFSKVTEGLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMV 322
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ +G + +V ++
Sbjct: 323 TVEWADPMEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSEYGNLERV--------KKL 374
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER A+KAL+ E++G+ ++ AKP DQK
Sbjct: 375 KDYAFIHFEERDGAVKALEEMNGKELEGEPIEIVFAKP-PDQK 416
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + + A+ + +
Sbjct: 168 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCSKEAAQEAVK 225
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 226 LCNNHEIRPGKQIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 273
Query: 170 TKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P Q++S+ + F+ + + +A +A + + K ++ G ++ A P D
Sbjct: 274 LSDVILYLQP-QDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMED 332
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 132/223 (59%), Gaps = 11/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 203 TGLNRGYAFVTFCTKEAAQEAVKLYNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 262
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 263 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 322
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + S+VK L+V+NL +T++ L++ F GK+ +V ++
Sbjct: 323 TVEWADPIEDPDPEVMSKVKVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKL 374
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER A+KA+ E++G+ ++ AKP DQK
Sbjct: 375 KDYAFIHFDERVGAVKAMDEMNGKELEGENIEIVFAKP-PDQK 416
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + L+ DP NRG+AF+ + A+ + +
Sbjct: 168 IFVGKIPRDLFEDELVPLFEKAG-SIWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 225
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 226 LYNNYEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 273
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 274 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 332
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +++ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSQVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSQVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 143/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF KE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 210 TGLNRGYAFVTFCNKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 269
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 270 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 329
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 330 TVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFSQFGKLERV--------KKL 381
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ E++G+ ++ AKP DQK +++A N Y
Sbjct: 382 KDYAFIHFDERDGAVKAMEGMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 440
Query: 243 ------PPHL 246
PPH+
Sbjct: 441 DYYYYGPPHM 450
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + N A+ + +
Sbjct: 175 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCNKEAAQEAVK 232
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 233 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 280
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 281 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 339
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 139/243 (57%), Gaps = 10/243 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 101 TGLNRGYAFVTFCTKEAAQEAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y F+HF ER A+KA++ +++G+ ++ AKP ++ + Q + T
Sbjct: 273 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGMMITTIM 332
Query: 244 PHL 246
HL
Sbjct: 333 VHL 335
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 66 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 123
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 124 RYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 171
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + K ++ G V A P D
Sbjct: 172 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
+GY F+TF TKE A +A + N GK IK + + A RLF+GN+P++ +D++ +
Sbjct: 199 RGYCFITFCTKEGAEEATKLDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEF 258
Query: 70 TKIGPGVISIELVKDPQNANQ-NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128
+K G++ + + + + NQ NRGFAF+EY +H A +++K+S + K+ + V W
Sbjct: 259 SKKTEGLVDVIIYRSAEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDW 318
Query: 129 ADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
ADP N + S+VK LYV+NL ++T+D +KE F GKI + ++ YG
Sbjct: 319 ADPVDNPDDETMSKVKVLYVRNLTSEVTEDIMKEKFGEFGKIER--------AKKVKDYG 370
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
F+HF +R A+KA++ +I ++ SLAKP ++ K
Sbjct: 371 FIHFEDRDDAIKAMQAMNGQKIGKLEIEVSLAKPPSENK 409
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 132/223 (59%), Gaps = 11/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF TKE AS+A+ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 210 SGLNRGYAFVTFCTKEAASEAVNLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 269
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 270 IVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV 329
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 330 TVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSQFGKLERV--------KKL 381
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER +A+KAL ++G+ +D AKP DQK
Sbjct: 382 KDYAFVHFDERDAAVKALAQMNGKVLEGEHIDIVFAKP-PDQK 423
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A +
Sbjct: 175 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLSG-LNRGYAFVTFCTKEAASEAVN 232
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T++++ E FA +
Sbjct: 233 LCNNNEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFAKVTEG 280
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G V+ A P D
Sbjct: 281 LNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 339
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 143/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NR F F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 143/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NR F F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 141/226 (62%), Gaps = 13/226 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF T++ A +A+++L++ E+K +++K + + A RLF+GN+P++ ++
Sbjct: 210 TGLNRGYAFVTFTTRDAAQEAVKQLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREE 269
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQ-NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + +K+ + + + +A + NRGFAF+EY +H A +++K+ N + ++ +
Sbjct: 270 IIEEFSKLTESLTDVIVYNVADDAKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCD 329
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WADP+ + S+VK LYV+NL +D+T+D+++E F GK+ +V ++
Sbjct: 330 IIVDWADPQEEPDEETMSKVKVLYVRNLKQDVTEDQIREKFEVFGKVERV--------KK 381
Query: 183 RSRYGFVHFAERSSAMKALKNTE-KYEI-DGQVLDCSLAKPQADQK 226
YGFVHF ER A+ A+K+ K E+ +G V++ SLAKP + K
Sbjct: 382 IKDYGFVHFEEREHALAAMKDLNGKQELGEGSVMEISLAKPPTENK 427
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
H +F G +P++ ED++ GP + L+ +P NRG+AF+ + A+ +
Sbjct: 173 HEVFAGKIPKDMFEDELVPLFENCGP-IWDFRLMMEPLTG-LNRGYAFVTFTTRDAAQEA 230
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+++ N + K PT R + + + L+V N+PK T++ + E F+ +
Sbjct: 231 VKQLDNYEIK-----PT------RRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKLTE 279
Query: 169 -ITKVVI-PPAKPGQERSR-YGFVHFAERSSA 197
+T V++ A ++++R + F+ + SA
Sbjct: 280 SLTDVIVYNVADDAKKKNRGFAFLEYDSHKSA 311
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 143/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 47 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 106
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRG F+EY +H A +R+++ + K K+ N
Sbjct: 107 ILEEFSKVTEGLTDVILYHQPDDKKKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 166
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 167 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 218
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 219 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 277
Query: 243 ------PPHL 246
PPH+
Sbjct: 278 DYYYYGPPHM 287
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 68
Query: 110 QKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 69 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 116
Query: 169 ITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G V A P D
Sbjct: 117 GLTDVILYHQPDDKKKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKDAAQEAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R +A+KA+ E++G+ ++ LAKP
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKELEGEEIEIVLAKP 411
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFDKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKDAAQEAVK 224
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDNYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 131/218 (60%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 235 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 294
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 295 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 354
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 355 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 406
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y F+HF ER A+KA++ +++G+ ++ AKP
Sbjct: 407 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 444
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 200 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 257
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 258 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 305
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 306 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 364
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 202 SGQNRGYAFITFCNKDAALEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRES 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEDFSKVTEGLMEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 321
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVDEPDPEIMAKVKVLFVRNLATPVTEELLEKTFSQFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R +A+KA++ E++G+ ++ LAKP
Sbjct: 374 KDYAFVHFEDRDAAVKAMQEMNCKELEGEEIEIVLAKP 411
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + N A +
Sbjct: 166 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLLSGQNRGYAFITFCNKDAALEA-- 222
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
KL DN S S A ++ L+V ++PK+ T++ + E F+ +
Sbjct: 223 ------VKLCDNYEIRSGKYLGVCISVANNR---LFVGSIPKNKTRESILEDFSKVTEGL 273
Query: 171 KVVIPPAKPGQERSRYG--FVHFAERSSAMKA 200
VI +P ++ G F+ + + SA +A
Sbjct: 274 MEVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 305
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 131/218 (60%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 239 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 298
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 299 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 358
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 359 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 410
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y F+HF ER A+KA++ +++G+ ++ AKP
Sbjct: 411 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 448
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 204 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 261
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 262 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 309
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 310 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 368
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 142/250 (56%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 128 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 187
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 188 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 247
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 248 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 299
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ A P D+K + +A N Y
Sbjct: 300 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFANP-PDKKRKERKAQRHAAKNQMYD 358
Query: 243 ------PPHL 246
PPH+
Sbjct: 359 DYYYYGPPHM 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 93 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 150
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 151 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 198
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 199 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 257
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 131/218 (60%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y F+HF ER A+KA++ +++G+ ++ AKP
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 408
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 220
Query: 110 QKMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 268
Query: 169 -ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 144/251 (57%), Gaps = 19/251 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQV-KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
TV WADP + + ++V K L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVMKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KK 370
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMY 429
Query: 243 -------PPHL 246
PPH+
Sbjct: 430 DDYYYYGPPHM 440
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 131/223 (58%), Gaps = 11/223 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+TF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 SGLNRGYAFLTFCTKEAAQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLV 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F G + +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFGQFGNLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF +R A+KAL E++G+ ++ AKP DQK
Sbjct: 371 KDYAFVHFNDRDGAVKALTEMNGKELEGEHIEIVFAKP-PDQK 412
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPQFEKAGP-IWDLRLMMDPLSG-LNRGYAFLTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LCNNHEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G ++ A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIED 328
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A + N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 202 TGLNRGYAFVTFCTKEAAQEAAKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVG 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 374 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 432
Query: 243 ------PPHL 246
PPH+
Sbjct: 433 DYYYYGPPHM 442
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN--ANQNRGFAFIEYYNHACAEYS 108
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTGLTGLNRGYAFVTFCTKEAAQEA 222
Query: 109 RQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
+ +N + + + +S A+ R L+V ++PK T++++ E F+
Sbjct: 223 AKLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVT 270
Query: 168 KITKVVIPPAKPGQERSRYGFV--HFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQA 223
+ VI +P ++ GF + + +A +A + + K ++ G V A P
Sbjct: 271 EGLTDVILYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIE 330
Query: 224 D 224
D
Sbjct: 331 D 331
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 140/246 (56%), Gaps = 14/246 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GY FVT+ KE A++ ++ L++ E++ KK + +Q+ RLF+G++P+ +D+
Sbjct: 199 SGQNRGYGFVTYTNKEAATECVKMLDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDE 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + I G+ + + ++ +NRGF F+EY +H A +R+++S+ K K +N
Sbjct: 259 IFEEFDGITQGLKDVIIYLQTEDKMKNRGFCFLEYTDHKAASQARRRLSSVKVKAFNNTV 318
Query: 125 TVSWADPRNAESS-AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
+V WADP S S+VK LY+KNL T++ + F+ +G++ +V ++
Sbjct: 319 SVDWADPVEEPSDEIMSKVKVLYIKNLSMKATEEIVMATFSAYGEVERV--------KKI 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
Y FVHF ER +AMKAL+ ++G+ ++ SLAKP D+K +K T+
Sbjct: 371 KDYAFVHFKERDNAMKALEELNGLNLEGEAIEISLAKP-VDKKKKERQMERKMM---THA 426
Query: 244 PHLGYG 249
+GYG
Sbjct: 427 YGMGYG 432
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 144/253 (56%), Gaps = 21/253 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKA---VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + VT + G+ + L P + +NRGF F+EY +H A +R+++ + K K+
Sbjct: 259 ILEEFSKVTGLWEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG 318
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 319 NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV-------- 370
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
++ Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N
Sbjct: 371 KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQ 429
Query: 241 TY-------PPHL 246
Y PPH+
Sbjct: 430 MYDDYYYYGPPHM 442
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH---- 165
+N + + + +S A+ R L+V ++PK T++++ E F+
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTGL 269
Query: 166 HGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQ 222
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P
Sbjct: 270 WEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPI 329
Query: 223 AD 224
D
Sbjct: 330 ED 331
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 132/219 (60%), Gaps = 11/219 (5%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKA 68
+GYAF+TF +KE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + +
Sbjct: 203 RGYAFITFCSKEGAQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEE 262
Query: 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128
+K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV W
Sbjct: 263 FSKVTEGLSDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEW 322
Query: 129 ADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
ADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y
Sbjct: 323 ADPIEDPDPEVMAKVKVLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYA 374
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
F+HF ER A+KAL+ E++G+ ++ AKP DQK
Sbjct: 375 FIHFEERDGAVKALEEMNGKELEGEPIEIVFAKP-PDQK 412
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP ++ NRG+AFI + + A+ + +
Sbjct: 164 IFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPL-SSLNRGYAFITFCSKEGAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LCNNHEIRPGKHIGVCISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTEG 269
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ + + +A +A + + K ++ G ++ A P D
Sbjct: 270 LSDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIED 328
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK---GKKIKCSAAQAKHRLFIGNVPR 58
K ++S KGY F F+ +E A +A+ L E+K G+++ + K++L+IG +PR
Sbjct: 135 KDRESNTNKGYCFCVFKARESAEKAMTILEGREVKEFPGRRVNVVPSIVKNKLYIGQMPR 194
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+ +++ + G+ IEL+ D + NQ RGF FI +YN A A + +K+S P+F+
Sbjct: 195 DITREELEVLLKAEVVGLEKIELMMD-KETNQARGFGFIAFYNSAAATLALRKLSRPEFR 253
Query: 119 LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI--PP 176
L + V WADP+ E +VK++YV NLP+ T++ L+ +F+ +G + +V + P
Sbjct: 254 LRGHQVQVMWADPKRDE-IGTEKVKSIYVGNLPEQYTENDLRAIFSQYGTVERVTLLYMP 312
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQADQKTSGG 230
P + R+ Y F+++ +RSSA++A+ E K+ + + L +AKPQA + G
Sbjct: 313 DDPTKLRN-YTFINYTDRSSALRAVSEAENKKHIMTDKELIVHMAKPQAQRDDGMG 367
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 129/218 (59%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+T+ K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 200 SGQNRGYAFITYCNKDDAQKAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRES 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L + P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 260 ILEDFGKVTEGLQEVILYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 319
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ FA GK+ +V ++
Sbjct: 320 TVEWADPVAEPDPEVMAKVKVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKL 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A++A+ E+ G+ ++ LAKP
Sbjct: 372 KDYAFVHFEERDAAVRAMDEMNGKEVGGEEIEIVLAKP 409
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ G + + L+ DP + QNRG+AFI Y N A+ + +
Sbjct: 165 VFVGKIPRDLYEDELVPLFESAG-AIWDLRLMMDPLSG-QNRGYAFITYCNKDDAQKAVK 222
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + +S A+ R L+V ++PK+ T++ + E F +
Sbjct: 223 LCDNHEIRPGKYLGVCISVANNR------------LFVGSIPKNKTRESILEDFGKVTEG 270
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ VI +P ++ G F+ + + SA +A + + K ++ G + A P A+
Sbjct: 271 LQEVILYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 329
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 134/224 (59%), Gaps = 11/224 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAFVT+ TKE A A+++L++ E+ KG+ + + A +RLF+G++P+N + +
Sbjct: 191 SGQNRGYAFVTYTTKESAQDAVKQLDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQE 250
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K+ G+ + + P++ +NRGFAF+EY +H A +R+++ + + K+ N
Sbjct: 251 IFDEFGKVTNGLKDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNIT 310
Query: 125 -TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
TV WADP + S+VK LYV+NL + ++ ++ F +G + +V ++
Sbjct: 311 VTVDWADPIEEPDDEVMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERV--------KK 362
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF R A+KA+++ E++G ++ SLAKP +++K
Sbjct: 363 IKDYAFVHFENREDAIKAMEDLNGKELEGSAMEISLAKPPSEKK 406
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 21/146 (14%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
++F+ +PR+ ED++ K GP + + L+ DP + QNRG+AF+ Y A+ +
Sbjct: 155 QVFVSKIPRDMFEDELIPLFEKPGP-IFDLRLMMDPLSG-QNRGYAFVTYTTKESAQDAV 212
Query: 110 QKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+++ N + + +S A+ R L+V ++PK+ ++ +E+F GK
Sbjct: 213 KQLDNYEIRKGRWLGVCISVANNR------------LFVGSIPKNKSK---QEIFDEFGK 257
Query: 169 IT---KVVIPPAKPGQERSRYGFVHF 191
+T K VI P +R GF
Sbjct: 258 VTNGLKDVIIYYMPEDKRKNRGFAFL 283
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 129/218 (59%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+T+ K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 200 SGQNRGYAFITYCNKDDAQKAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRES 259
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L + P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 260 ILEDFGKVTEGLQEVILYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 319
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ FA GK+ +V ++
Sbjct: 320 TVEWADPVAEPDPEVMAKVKVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKL 371
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A++A+ E+ G+ ++ LAKP
Sbjct: 372 KDYAFVHFEERDAAVRAMDEMNGKEVGGEEIEIVLAKP 409
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ G + + L+ DP + QNRG+AFI Y N A+ + +
Sbjct: 165 VFVGKIPRDLYEDELVPLFESAG-AIWDLRLMMDPLSG-QNRGYAFITYCNKDDAQKAVK 222
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + +S A+ R L+V ++PK+ T++ + E F +
Sbjct: 223 LCDNHEIRPGKYLGVCISVANNR------------LFVGSIPKNKTRESILEDFGKVTEG 270
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ VI +P ++ G F+ + + SA +A + + K ++ G + A P A+
Sbjct: 271 LQEVILYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 329
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 12/225 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + ++E A +AI+ L+ E++ G+ I + RLFIG++PR+ +++
Sbjct: 109 SGENRGYAFVMYTSREEAVRAIQMLDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEE 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + N+NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 169 ILEEMRKVTDGVVDVIVYPSSSDRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPI 228
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P ++ E A +V+ LYV+NL D T++ L+ F+ G + +V +
Sbjct: 229 QVDWAEPEKDMEEEAMQRVRVLYVRNLMLDTTEETLRREFSRFKPGSVERV--------K 280
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + Y FVHF RS A+ L +IDG ++ SLAKP +++
Sbjct: 281 KLTDYAFVHFRSRSEALATLAVMNGVQIDGTTVEVSLAKPTGNKE 325
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L LF G+I + + G+ R Y FV + R A++A++
Sbjct: 75 VFVGKVPRDMYEDELVPLFESAGRIYEFRLMMEFSGENRG-YAFVMYTSREEAVRAIQML 133
Query: 205 EKYEI 209
+ YE+
Sbjct: 134 DGYEV 138
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 134/227 (59%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAF+TF K A++A ++ + E L GK +K + + A RLFIGN+P++ +++
Sbjct: 235 TGKNRGYAFITFCEKNFAAEAAKKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQ-NAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV+ + P AN +NRGF F+++ +H A +++K+ K + ++
Sbjct: 295 ILAEFKEHTEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNS 354
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + S+VK LYV+NL + +T+++LKE+FA HG++ + +
Sbjct: 355 DLVVDWAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERA--------K 406
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y F+HF ER A+KA++ ++G ++ SLAKPQ D+K +
Sbjct: 407 KIRDYAFIHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKKKT 453
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
+Y+ +P +I +D L LF GKI ++++ P G+ R Y F+ F E++ A +A K
Sbjct: 200 IYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLT-GKNRG-YAFITFCEKNFAAEAAK 257
Query: 203 NTEKYEI 209
+ +EI
Sbjct: 258 KFDGHEI 264
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 13/235 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF KE A +A ++LN E++ G+ I + RL++ +PR+ +D
Sbjct: 120 NGSNRGYAFVTFCDKEQAKRACQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSRED 179
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+R + ++ GV+ + L + ++NRGFAFIEY +H A +R+K++ + L N
Sbjct: 180 VRSEIARLTDGVVDVILYPSAMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEI 239
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKEL---FAHHGKITKVVIPPAKPG 180
TV WA+P R+ + +QVK LYV+NL T++ L+E+ + G + +V
Sbjct: 240 TVDWAEPERDVDEETMAQVKKLYVRNLMMHTTEEHLREVVEAISGTGTVERV-------- 291
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 235
++ Y FVHF+ R A++ + ++DG V++ LAKP N+QK
Sbjct: 292 KKIRDYAFVHFSRREDAIRVQEALNGQDLDGSVVEVKLAKPPDRSIMRFVKNAQK 346
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 185 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 244
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 245 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 304
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 305 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 356
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R +A+KA+ EI+G+ ++ LAKP
Sbjct: 357 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 394
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 150 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 207
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 208 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 255
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 256 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 311
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 176 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 235
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 236 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 295
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 296 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 347
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 348 KDYAFVHFEDRGAAVKAM 365
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 141 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 198
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 199 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 246
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 247 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 302
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 174 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 233
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 234 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 293
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 294 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 345
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 346 KDYAFVHFEDRGAAVKAM 363
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 139 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 196
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 197 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 244
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 245 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 300
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 171 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 230
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 231 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 290
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 291 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 342
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 343 KDYAFVHFEDRGAAVKAM 360
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 136 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 193
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 194 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 241
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 242 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 297
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 273 KDYAFVHFEDRGAAVKAM 290
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 66 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 171
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 172 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 227
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 273 KDYAFVHFEDRGAAVKAM 290
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 66 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 171
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 172 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 227
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 171 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 230
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 231 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 290
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 291 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 342
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 343 KDYAFVHFEDRGAAVKAM 360
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 136 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 193
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 194 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 241
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 242 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 297
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 180 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 239
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 240 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 299
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 300 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 351
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 352 KDYAFVHFEDRGAAVKAM 369
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 145 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 202
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 203 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 250
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 251 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 306
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 273 KDYAFVHFEDRGAAVKAM 290
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 66 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 171
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 172 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 227
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 161 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 221 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 272
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 273 KDYAFVHFEDRGAAVKAM 290
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 66 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 171
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 172 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 227
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEEAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P +R G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 147 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 206
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 207 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 266
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 267 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 318
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 319 KDYAFVHFEDRGAAVKAM 336
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 92 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 149
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 150 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 197
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 198 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 257
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 258 KVKVWGNVVTVEWADP 273
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 135/241 (56%), Gaps = 19/241 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGE-- 62
SG KG+AF T+ TKE A+ A++E++ +++ GK + +QA +RLF+G++P++ +
Sbjct: 201 SGLNKGFAFCTYTTKEAATLAVKEMDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQ 260
Query: 63 --DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
D+ V + ++ I ++ ++NRGFAF+E+ H A +R++ + K+
Sbjct: 261 IFDEFASKVENLSDVIVYIS----SEDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVF 316
Query: 121 DN-APTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
N PTV WADP + + S+VK +YV+NL I + +L ELF +G + KV
Sbjct: 317 GNITPTVDWADPVEEPDDNVMSKVKVVYVRNLSPAIEETKLNELFKQYGAVEKV------ 370
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
++ Y F+HF R A++A++ ++D ++ SLAKPQ ++K + S +L
Sbjct: 371 --KKLKDYAFIHFVNRDDAVRAIEELNGQDLDDLKIEVSLAKPQTEKKEARRGQSGFGSL 428
Query: 239 N 239
N
Sbjct: 429 N 429
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 63 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 122
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 123 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 182
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 183 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 234
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 235 KDYAFVHFEDRGAAVKAM 252
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 8 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 65
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 66 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 113
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 114 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 173
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 174 KVKVWGNVVTVEWADP 189
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF K+ A++A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 205 SGQNRGYAFITFCGKDAAAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRES 264
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 265 ILEDFGKVTEGLQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 324
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+ L +T++ L++ F+ GK+ +V ++
Sbjct: 325 TVEWADPVAEPDPDVMAKVKVLFVRKLATPVTEELLEKTFSAFGKLERV--------KKL 376
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R +A+KA+ E+ G+ ++ LAKP
Sbjct: 377 KDYAFVHFEDRDAAVKAMSEMNGKELGGEEIEIVLAKP 414
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A +
Sbjct: 170 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKDAAAEA-- 225
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
KL DN S S A ++ L+V ++PK+ T++ + E F +
Sbjct: 226 ------VKLCDNYEIRSGKYLGVCISVANNR---LFVGSIPKNKTRESILEDFGKVTEGL 276
Query: 171 KVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ VI +P ++ G F+ + + SA +A + + K ++ G + A P A+
Sbjct: 277 QEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 334
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 164 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 223
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 224 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 283
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 284 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 335
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 336 KDYAFVHFEDRGAAVKAM 353
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G +++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSRVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 167 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 214
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 215 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 274
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 275 KVKVWGNVVTVEWADP 290
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 164 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 223
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 224 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 283
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 284 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 335
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 336 KDYAFVHFEDRGAAVKAM 353
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 167 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 214
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 215 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 274
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 275 KVKVWGNVVTVEWADP 290
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 164 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 223
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 224 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 283
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 284 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 335
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 336 KDYAFVHFEDRGAAVKAM 353
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 167 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 214
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 215 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 274
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 275 KVKVWGNVVTVEWADP 290
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 164 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 223
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 224 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 283
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 284 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 335
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 336 KDYAFVHFEDRGAAVKAM 353
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 167 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 214
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 215 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 274
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 275 KVKVWGNVVTVEWADP 290
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 164 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 223
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 224 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 283
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 284 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 335
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 336 KDYAFVHFEDRGAAVKAM 353
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 167 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 214
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TE 205
+PK+ T++ + E F+ + VI +P ++ G F+ + + SA +A + +
Sbjct: 215 IPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSG 274
Query: 206 KYEIDGQVLDCSLAKP 221
K ++ G V+ A P
Sbjct: 275 KVKVWGNVVTVEWADP 290
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF K+ A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKDAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKDAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ ++ E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDNYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF K+ A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKDAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKDAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+T+ K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 202 SGQNRGYAFITYCNKDDAQKAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRES 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEDFGKVTEGLQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+ L +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVAEPDPEVMAKVKVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A+KA++ E+ G+ ++ LAKP
Sbjct: 374 KDYAFVHFEERDAAVKAMEEMNGKELGGEEIEIVLAKP 411
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ GP + + L+ DP + QNRG+AFI Y N A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFESAGP-IWDLRLMMDPLSG-QNRGYAFITYCNKDDAQKAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + +S A+ R L+V ++PK+ T++ + E F +
Sbjct: 225 LCDNHEIRPGKYLGVCISVANNR------------LFVGSIPKNKTRESILEDFGKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ VI +P ++ G F+ + + SA +A + + K ++ G + A P A+
Sbjct: 273 LQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 331
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 30/245 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ +GYAFV + ++E A+ A E+LN ++ KKI+ S Q KHR+FIGNV R ++
Sbjct: 52 TGQNRGYAFVAYPSREDAAAAAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEV 111
Query: 66 RKAVTKIGPGVISIELVKDPQNAN-----QNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ + G G +E ++ P+N N Q +GF F ++YN +CAE + + +S + L
Sbjct: 112 IQGLRDAGCG--GVEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFL- 168
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD-----RLKELFAHHGKITKVVIP 175
T WADP+ + S + VK++YV NLP + D +LK LF +G + V +
Sbjct: 169 GRPVTARWADPKLPDPS--TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVY 226
Query: 176 PAKPGQ----ERSRYGFVHFAERSSAMKALKNTEK-----------YEIDGQVLDCSLAK 220
+PG + + FVH+A R SA+ A + ++ EIDG LD ++AK
Sbjct: 227 KPRPGDASASAKRNFAFVHYASRESALAAAEAGKRSDDADATPSAPIEIDGCALDVTMAK 286
Query: 221 PQADQ 225
P DQ
Sbjct: 287 PMKDQ 291
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 26/205 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVI---SIELVKDPQNANQNRGFAFIEYYNHACAEY 107
LF+G +P++ E D+R GV S++LV D QNRG+AF+ Y + A
Sbjct: 13 LFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTAT-GQNRGYAFVAYPSREDAAA 71
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF--AH 165
+ +K++ ++D VS ++ +++ N+ + T+ + + A
Sbjct: 72 AAEKLNEK--AIEDKKIRVSVKQTKH----------RVFIGNVDRMKTRAEVIQGLRDAG 119
Query: 166 HGKITKVVIP----PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
G + K+ +P PA P Q + +GF F S A +A+K + + L +
Sbjct: 120 CGGVEKLEMPKNRNPAYPSQTKG-FGFADFYNASCAERAMKILSESRL---FLGRPVTAR 175
Query: 222 QADQKTSGGSNSQKSALNPTYPPHL 246
AD K S + KS PP L
Sbjct: 176 WADPKLPDPSTTVKSVYVGNLPPSL 200
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF +K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCSKDAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F +
Sbjct: 225 LCDNYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFNKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 129/219 (58%), Gaps = 11/219 (5%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKA 68
+GYAFVTF KE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + +
Sbjct: 210 RGYAFVTFCAKEAAQEAVKLCNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEE 269
Query: 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128
+K+ G+ + L P + +NRGF F+E+ +H A +R+++ + K K+ TV W
Sbjct: 270 FSKVTDGLNDVILYHQPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEW 329
Query: 129 ADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
ADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y
Sbjct: 330 ADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSAFGKLERV--------KKLKDYA 381
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
F+HF ER A+KAL E++G+ ++ AKP DQK
Sbjct: 382 FIHFEEREGAVKALDEMNGKELEGEPIEIVFAKP-PDQK 419
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + L+ DP ++ NRG+AF+ + A+ + +
Sbjct: 171 IFVGKIPRDLFEDELVPLFEKAG-SIWDLRLMMDPL-SSLNRGYAFVTFCAKEAAQEAVK 228
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + + +S A+ R L+V ++PK T++++ E F+
Sbjct: 229 LCNNYEIRPGKHIGACISVANNR------------LFVGSIPKSKTKEQIVEEFSKVTDG 276
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
VI +P ++ G F+ F + +A +A + + K ++ G ++ A P D
Sbjct: 277 LNDVILYHQPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIED 335
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 136/275 (49%), Gaps = 62/275 (22%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEE------------------------------------ 29
SG +GYAFVTF T+E +A++E
Sbjct: 202 SGANRGYAFVTFTTREATQRAVQEHVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAG 261
Query: 30 ----------------LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 72
L++ E+K GK ++ + RLF+GN+P++ G++++ + K+
Sbjct: 262 VPTVITDLVYMCNVTPLDNHEIKPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKL 321
Query: 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132
G++ + + P + +NRGF F+EY +H A +++++ + K+ V WADP+
Sbjct: 322 TAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 381
Query: 133 NA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 191
+ S+VK LYV+NL ++IT++ LKE F +G + +V ++ Y FVHF
Sbjct: 382 EEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERV--------KKIKDYAFVHF 433
Query: 192 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+R A+KA++ + E+ G L+ SLAKP +D+K
Sbjct: 434 EDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKK 468
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 139/270 (51%), Gaps = 14/270 (5%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKA 68
+GYAFV + + A ++++ LN E+ KG+ I + RLF+G +P+ ++++R+
Sbjct: 73 RGYAFVVYCKAQDAKKSVKLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREE 132
Query: 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128
+ K+ GV I + + ++NRGFAF+EY +H A +R+K+ N + +L ++ V W
Sbjct: 133 MEKVTDGVADIIMYPAASDKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVAVDW 192
Query: 129 ADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
A+P + + VK LYV+NL T+ +L + F+HH + +V ++ Y
Sbjct: 193 AEPELEVDEETMATVKILYVRNLMLTTTEAQLNKAFSHHAPVERV--------KKIRDYA 244
Query: 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLG 247
FVHF RS A+ A+K +D V++ +LAKP D++ + +
Sbjct: 245 FVHFNSRSGALTAMKAMNGSVLDDAVIEVTLAKP-VDKEAQMRNPPRHQKSPSPPTIPPP 303
Query: 248 YGMVGGAYGALGAGYVPAGFAQPMVYGRGA 277
YG++ Y L + Y P P V+ R +
Sbjct: 304 YGILPIDYSMLPSLYFPPS---PKVFSRNS 330
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ V K GP V + L+ D + + NRG+AF+ Y A+ S +
Sbjct: 34 IFIGKIPRDCFEDELVPIVEKAGP-VYEMRLMMD-HSGSMNRGYAFVVYCKAQDAKKSVK 91
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-I 169
++ + + D N L+V +PK +T++ ++E +
Sbjct: 92 LLNEYEIRKGRTIGVCMSVD--NCR---------LFVGGIPKCLTKENIREEMEKVTDGV 140
Query: 170 TKVVIPPAKPGQERSR-YGFVHFA-ERSSAM--KALKNTEKYEIDGQVLDCSLAKP--QA 223
+++ PA + ++R + FV +A R++AM + L N+ + + V+ A+P +
Sbjct: 141 ADIIMYPAASDKSKNRGFAFVEYASHRAAAMARRKLINS-RVRLWNHVVAVDWAEPELEV 199
Query: 224 DQKT 227
D++T
Sbjct: 200 DEET 203
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV + KE A +AI++LN+ E+ KG+ + A+ RLF+G +P+N D+
Sbjct: 111 SGNNRGYAFVMYTNKEDAKKAIKQLNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDE 170
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 171 ILHEMQKVTEGVVDVIVYPSATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQI 230
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T++ +++ F G + +V +
Sbjct: 231 AVDWAEPEQEVDEDIMKTVKVLYVRNLMLNTTEETIEKEFNSLKEGSVERV--------K 282
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A+ AL + +DG V++ LAKP
Sbjct: 283 KIRDYAFVHFVTREDALYALNAMNGHNVDGSVVEVVLAKP 322
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ +G + + L+ D + NRG+AF+ Y N A+ + +
Sbjct: 77 IFVGKIPRDLFEDELVPVFMSVG-LIYEMRLMMD--FSGNNRGYAFVMYTNKEDAKKAIK 133
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR-LKELFAHHGKI 169
+++N + + R A+ L+V +PK+ +D L E+ +
Sbjct: 134 QLNNYEIR-----------KGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKVTEGV 182
Query: 170 TKVVIPPAKPGQERSR-YGFVHFA-ERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
V++ P+ + ++R + FV + R++AM K + ++ G + A+P+ +
Sbjct: 183 VDVIVYPSATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQE 240
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P N E + ++V +P+D+ +D L +F G I ++ + G R Y FV
Sbjct: 63 PPNWEGITPGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMDFSGNNRG-YAFVM 121
Query: 191 FAERSSAMKALKNTEKYEI 209
+ + A KA+K YEI
Sbjct: 122 YTNKEDAKKAIKQLNNYEI 140
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF +K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFGKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCSKDAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F GK+
Sbjct: 225 LCDNYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEF---GKV 269
Query: 170 TK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
T+ V++ ++++R + F+ + + SA +A + + K ++ G V+ A P
Sbjct: 270 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 12/230 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+GE +GYAFV + KE A +AI+ L++ +++ GK I + RLFIG++P+ +D+
Sbjct: 112 TGENRGYAFVMYTNKEAAQRAIQMLDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDE 171
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 172 VMAEMKKVTDGVVDVIMYPSSTDKSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSI 231
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P ++ E +V+ +YV+NL T++ L + F+H G + +V +
Sbjct: 232 QVDWAEPEKDVEEEVMQRVRVIYVRNLMLSTTEETLFQEFSHFKPGSVERV--------K 283
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS 231
+ + Y FVH+ R A+ AL +IDG ++ LAKP ++ S GS
Sbjct: 284 KLTDYAFVHYYCREDALAALAIMNGVQIDGATIEVMLAKPATIKEDSNGS 333
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 26/182 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + +NRG+AF+ Y N A+ + Q
Sbjct: 78 VFVGKIPRDMYEDELVPLFERAGK-LYEFRLMM--EFTGENRGYAFVMYTNKEAAQRAIQ 134
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ N K + VS + R L++ ++PK+ T+D E+ A K+
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCR------------LFIGSIPKEKTKD---EVMAEMKKV 179
Query: 170 T----KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQ 222
T V++ P+ + R+R + FV + +A A + +++ GQ + A+P+
Sbjct: 180 TDGVVDVIMYPSSTDKSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPE 239
Query: 223 AD 224
D
Sbjct: 240 KD 241
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+T+ K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 204 SGQNRGYAFITYCNKDDAQKAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRES 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 264 ILEDFGKVTEGLQDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 323
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+ L +T++ L++ F+ GK+ +V ++
Sbjct: 324 TVEWADPVAEPDPEVMAKVKVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKL 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF ER +A++A++ E+ G+ ++ LAKP
Sbjct: 376 KDYAFVHFEERDAAVQAMEGMNGKELGGEEIEIVLAKP 413
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ GP + + L+ DP + QNRG+AFI Y N A+ + +
Sbjct: 169 VFVGKIPRDLYEDELVPLFESAGP-IWDLRLMMDPLSG-QNRGYAFITYCNKDDAQKAVK 226
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + +S A+ R L+V ++PK+ T++ + E F +
Sbjct: 227 LCDNHEIRPGKYLGVCISVANNR------------LFVGSIPKNKTRESILEDFGKVTEG 274
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ VI +P ++ G F+ + + SA +A + + K ++ G + A P A+
Sbjct: 275 LQDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 333
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF +K+ A +A++ ++ E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFGKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCSKDAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N + + + +S A+ R L+V ++PK+ T++ + E F GK+
Sbjct: 225 LCDNYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEF---GKV 269
Query: 170 TK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
T+ V++ ++++R + F+ + + SA +A + + K ++ G V+ A P
Sbjct: 270 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF K+ A++A++ ++ E++ GK + + A +RLF+G++P+N +
Sbjct: 204 SGQNRGYAFITFCGKDAAAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRES 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 264 ILEDFGKVTEGLQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPV 323
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+ L +T++ L++ F+ GK+ +V ++
Sbjct: 324 TVEWADPVAEPDPDVMAKVKVLFVRKLAIPVTEELLEKTFSAFGKLERV--------KKL 375
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF +R +A+KA+ E+ G+ ++ LAKP
Sbjct: 376 KDYAFVHFEDRDAAVKAMAEMNGKELGGEGIEIVLAKP 413
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A +
Sbjct: 169 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKDAAAEA-- 224
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
KL DN S S A ++ L+V ++PK+ T++ + E F +
Sbjct: 225 ------VKLCDNYEIRSGKYLGVCISVANNR---LFVGSIPKNKTRESILEDFGKVTEGL 275
Query: 171 KVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+ VI +P ++ G F+ + + SA +A + + K ++ G + A P A+
Sbjct: 276 QEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 333
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 12/225 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAF+TF K A++A ++ + E L GK +K + + A RLFIGN+P++ +++
Sbjct: 235 TGKNRGYAFITFCEKNFAAEAAKKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + +
Sbjct: 295 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNL 354
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ HG++ V +
Sbjct: 355 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------K 406
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ Y F+HF ER A+KA++ ++G ++ SLAKPQ+D+K
Sbjct: 407 KIKDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKK 451
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 153/294 (52%), Gaps = 30/294 (10%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+T+ K A +A ++ + E+ GK +K + + A RLFIGN+P++ +++
Sbjct: 330 TGRNRGYAFLTYCDKTAAYEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEE 389
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + ++
Sbjct: 390 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNS 449
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ +G++ + +
Sbjct: 450 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AK 501
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK--------------- 226
+ Y F+HF ER A+KA++ E++G +D SLAKPQ+D+K
Sbjct: 502 KIRDYAFIHFMEREPAIKAMEALNGTELEGIAIDISLAKPQSDKKKMMRGRGRGFGGLRG 561
Query: 227 TSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVP-AGFAQPMVYGRGAAP 279
G + + P G G GG +GY P AG+ + +YG GA P
Sbjct: 562 AFGDFSFGRGMRGGRGTPGFGRGSFGGPTDFGYSGYDPYAGYEE--LYGYGAPP 613
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+Y+ +PK++ +D L LF GKI + + P R+R Y F+ + ++++A +A K
Sbjct: 295 IYIGKIPKEVYEDTLITLFEDMGKIWDLRL-MMDPLTGRNRGYAFLTYCDKTAAYEAAKK 353
Query: 204 TEKYEI 209
+ YEI
Sbjct: 354 FDGYEI 359
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 12/225 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAF+TF K A++A ++ + E L GK +K + + A RLFIGN+P++ +++
Sbjct: 235 TGKNRGYAFITFCEKNFAAEAAKKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEE 294
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + +
Sbjct: 295 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNL 354
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ HG++ V +
Sbjct: 355 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------K 406
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ Y F+HF ER A+KA++ ++G ++ SLAKPQ+D+K
Sbjct: 407 KIKDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKK 451
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 12/225 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAF+TF K A++A ++ + E L GK +K + + A RLFIGN+P++ +++
Sbjct: 223 TGKNRGYAFITFCEKNFAAEAAKKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEE 282
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + +
Sbjct: 283 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNL 342
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ HG++ V +
Sbjct: 343 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------K 394
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ Y F+HF ER A+KA++ ++G ++ SLAKPQ+D+K
Sbjct: 395 KIKDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKK 439
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 18/222 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV F K A A+++LN+ E+ KG+ + + RLF+G +P+ +DD+
Sbjct: 149 GKNRGYAFVMFTAKSDAKGAVKKLNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDI 208
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+TK+ GV + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 209 FAEMTKVTEGVTDVIVYPSASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIA 268
Query: 126 VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ER 183
V WA+P ++ + QVK LYV+NL D T+D L+ +F+ KPG ER
Sbjct: 269 VDWAEPEQDVDDEIMGQVKVLYVRNLMLDTTEDTLQNVFSQF-----------KPGSVER 317
Query: 184 SR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF+ R + ++A++ ID ++ +LAKP
Sbjct: 318 VKKIRDYAFVHFSTREACIEAMEKINGTHIDQAEVEVTLAKP 359
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
PR AE ++V +P+D+ +D L +F G+I ++ + G+ R Y FV
Sbjct: 109 PRGAE---------VFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFDGKNRG-YAFVM 158
Query: 191 FAERSSAMKALKNTEKYEI 209
F +S A A+K YEI
Sbjct: 159 FTAKSDAKGAVKKLNNYEI 177
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 30 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 88
L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + + P +
Sbjct: 5 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDK 64
Query: 89 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYV 147
+NRGF F+EY +H A +++++ + K+ V WADP+ + S+VK LYV
Sbjct: 65 KKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYV 124
Query: 148 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 207
+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A++
Sbjct: 125 RNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGK 176
Query: 208 EIDGQVLDCSLAKPQADQK 226
EI ++ SLAKP +D+K
Sbjct: 177 EIGASNIEVSLAKPPSDKK 195
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 122/201 (60%), Gaps = 13/201 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 179 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 238
Query: 65 MRKA---VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + VT + G++ + L P + +NRGF F+EY +H A +R+++ + K K+
Sbjct: 239 ILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 298
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
N TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 299 NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-------- 350
Query: 181 QERSRYGFVHFAERSSAMKAL 201
++ Y FVHF +R +A+KA+
Sbjct: 351 KKLKDYAFVHFEDRGAAVKAM 371
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 144 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 201
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 202 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTGL 249
Query: 170 TK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
T+ V++ ++++R + F+ + + SA +A + + K ++ G V+ A P
Sbjct: 250 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 308
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 122/201 (60%), Gaps = 13/201 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 101 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 160
Query: 65 MRKA---VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + VT + G++ + L P + +NRGF F+EY +H A +R+++ + K K+
Sbjct: 161 ILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 220
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
N TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 221 NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-------- 272
Query: 181 QERSRYGFVHFAERSSAMKAL 201
++ Y FVHF +R +A+KA+
Sbjct: 273 KKLKDYAFVHFEDRGAAVKAM 293
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 66 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 123
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 124 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTGL 171
Query: 170 TK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
T+ V++ ++++R + F+ + + SA +A + + K ++ G V+ A P
Sbjct: 172 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 230
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 109 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 168
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 169 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 228
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 229 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 280
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHFA R A++A+ + E++G L+ +LAKP ++ S GG+ ++
Sbjct: 281 IRDYAFVHFASREDAVRAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEA 340
Query: 236 SALNPTY 242
+A P+Y
Sbjct: 341 AAQPPSY 347
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 122/201 (60%), Gaps = 13/201 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKA---VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + VT + G++ + L P + +NRGF F+EY +H A +R+++ + K K+
Sbjct: 262 ILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 321
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
N TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 322 NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-------- 373
Query: 181 QERSRYGFVHFAERSSAMKAL 201
++ Y FVHF +R +A+KA+
Sbjct: 374 KKLKDYAFVHFEDRGAAVKAM 394
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTGL 272
Query: 170 TK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
T+ V++ ++++R + F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 331
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 122/201 (60%), Gaps = 13/201 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKA---VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + VT + G++ + L P + +NRGF F+EY +H A +R+++ + K K+
Sbjct: 262 ILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 321
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
N TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 322 NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-------- 373
Query: 181 QERSRYGFVHFAERSSAMKAL 201
++ Y FVHF +R +A+KA+
Sbjct: 374 KKLKDYAFVHFEDRGAAVKAM 394
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTGL 272
Query: 170 TK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
T+ V++ ++++R + F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 331
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 98 DGKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 157
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 158 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 217
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 218 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKIFGQFNPGCVERV--------K 269
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHFA R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 270 KIRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 316
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + +E A +AI+ L++ E++ GK I + RLFIG++P++ +D+
Sbjct: 113 SGENRGYAFVMYTDREAAQRAIQMLDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDE 172
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + N+NRGFAF+EY +H A +R+K+ F+L ++
Sbjct: 173 VIEEMKKVTDGVVDAIVYPSTTDKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSI 232
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P ++ + +V+ LYV+NL + +++ L++ F+ G + +V +
Sbjct: 233 QVDWAEPEKDVDEEVMQRVRVLYVRNLMLETSEETLRQEFSRFKPGCVERV--------K 284
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ S Y F+H+ RS A+ AL IDG ++ +LAKP
Sbjct: 285 KLSDYAFIHYRSRSDALTALSLMNGAHIDGAAVEVTLAKP 324
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L LF G+I + + G+ R Y FV + +R +A +A++
Sbjct: 79 VFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMMEFSGENRG-YAFVMYTDREAAQRAIQML 137
Query: 205 EKYEI 209
+ YE+
Sbjct: 138 DNYEV 142
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD------QKTSGGSNSQKS 236
Y FVHF R A+ A+ N E++G L+ +LAKP QK + G ++ ++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA 339
Query: 237 ALNPTY 242
A P+Y
Sbjct: 340 AQQPSY 345
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 19/246 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMMETTEDTIKKIFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQ 234
+ Y FVHFA R A+ A+K +++G L+ +LAKP ++ S GG ++
Sbjct: 279 KIRDYAFVHFASREDAVHAMKKLNGTDLEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAE 338
Query: 235 KSALNP 240
+A+ P
Sbjct: 339 GAAVQP 344
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A++ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 109 DGKNRGYAFVMYTQKYEAKRAVKELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 169 ILEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 228
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 229 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------K 280
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A++A+ N E++G L+ +LAKP
Sbjct: 281 KIRDYAFVHFTSREDAVQAMNNLNNTELEGSCLEVTLAKP 320
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + ++ A +A+K
Sbjct: 75 VFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFDGKNRG-YAFVMYTQKYEAKRAVKEL 133
Query: 205 EKYEI 209
YEI
Sbjct: 134 NNYEI 138
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD------QKTSGGSNSQKS 236
Y FVHF R A+ A+ N E++G L+ +LAKP QK + G ++ ++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA 339
Query: 237 ALNPTY 242
A P+Y
Sbjct: 340 AQQPSY 345
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 132/247 (53%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHFA R A++A+ N E++G L+ +LAKP ++ S GG ++
Sbjct: 280 IRDYAFVHFASREDAVQAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEA 339
Query: 236 SALNPTY 242
+ P+Y
Sbjct: 340 AVQPPSY 346
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 122/201 (60%), Gaps = 13/201 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 63 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 122
Query: 65 MRKA---VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + VT + G++ + L P + +NRGF F+EY +H A +R+++ + K K+
Sbjct: 123 ILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 182
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
N TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 183 NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-------- 234
Query: 181 QERSRYGFVHFAERSSAMKAL 201
++ Y FVHF +R +A+KA+
Sbjct: 235 KKLKDYAFVHFEDRGAAVKAM 255
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 34 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 8 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 65
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKN 149
NRG+AFI + A+ + + + + + + +S A+ R L+V +
Sbjct: 66 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 113
Query: 150 LPKDITQDRLKELFAHHGKITK----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKN- 203
+PK+ T++ + E F+ +T+ V++ ++++R + F+ + + SA +A +
Sbjct: 114 IPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRL 173
Query: 204 -TEKYEIDGQVLDCSLAKP 221
+ K ++ G V+ A P
Sbjct: 174 MSGKVKVWGNVVTVEWADP 192
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 124/218 (56%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAFV + +K+ A + ++ LN+ E+ KGK I ++ RLF+G +P+ +D+
Sbjct: 93 NGQNRGYAFVVYTSKDDAKRCVKTLNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ V+K+ V+ + + Q+ +NRGFAF+EY +H A +R+K+ K +L +
Sbjct: 153 IMAEVSKVTDNVVDVIVYPSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQI 212
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + + QVK LY +NL T++ +++ F+ G++ +V ++
Sbjct: 213 AVDWAEPEQEVDQEIMDQVKVLYARNLLLSTTEETIEQAFSKFGEVERV--------KKI 264
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y F+HF + A A++ + E+DG ++ +LAKP
Sbjct: 265 KDYCFIHFRTKEQARDAMEAMNETELDGNEIEVTLAKP 302
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ GP + + L+ D QNRG+AF+ Y + A+ +
Sbjct: 59 VFVGKIPRDLYEDELVPVFETAGP-IYEVRLMMDFN--GQNRGYAFVVYTSKDDAKRCVK 115
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++N + + S D N L+V +PK + +D E+ A K+T
Sbjct: 116 TLNNYEIRKGKCIGVCSSVD--NCR---------LFVGGIPKKVKKD---EIMAEVSKVT 161
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALK-NTEKYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R +AM K T K ++ G + A+P+
Sbjct: 162 DNVVDVIVYPSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQ 221
Query: 224 D 224
+
Sbjct: 222 E 222
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A+ A+ N E++G L+ +LAKP
Sbjct: 279 KIRDYAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A+ A+ N E++G L+ +LAKP
Sbjct: 279 KIRDYAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A+ A+ N E++G L+ +LAKP
Sbjct: 279 KIRDYAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 131/225 (58%), Gaps = 12/225 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+T+ K A +A ++ + E+ GK +K + + A RLFIGN+P++ +++
Sbjct: 350 TGRNRGYAFLTYCDKTSAYEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEE 409
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + ++
Sbjct: 410 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNS 469
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ +G++ + +
Sbjct: 470 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AK 521
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ Y F+HF ER A+KA++ E++G +D SLAKPQ+D+K
Sbjct: 522 KIRDYAFIHFMEREPAIKAMEALNGTELEGIAIDISLAKPQSDKK 566
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+Y+ +PK++ +D L LF GKI + + P R+R Y F+ + +++SA +A K
Sbjct: 315 IYIGKIPKEVYEDTLITLFEDMGKIWDLRL-MMDPLTGRNRGYAFLTYCDKTSAYEAAKK 373
Query: 204 TEKYEI 209
+ YEI
Sbjct: 374 FDGYEI 379
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + T+E A +AI+ L++ E++ GK I + RLFIG++P++ +++
Sbjct: 81 SGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEE 140
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 141 IQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTI 200
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + +V+ LYV+NL T++ L+ F+ G + +V +
Sbjct: 201 QVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------K 252
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + Y F+HF R A+ AL++ IDG ++ +LAKP
Sbjct: 253 KLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 292
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + + +NRG+AF+ Y A+ + Q
Sbjct: 47 VFVGKIPRDMYEDELVPVFEQAG-HIYEFRLMM--EFSGENRGYAFVMYTTREKAQRAIQ 103
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE--LFAHHG 167
+ N + + VS + R L++ ++PKD ++ ++E + G
Sbjct: 104 LLDNYEIRPGKFIGVCVSLDNCR------------LFIGSIPKDKKKEEIQEEMMKVTEG 151
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKP--QA 223
+ +V P A + + FV + +A A + +++ G + A+P +
Sbjct: 152 VMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKEL 211
Query: 224 DQKT 227
D++T
Sbjct: 212 DEET 215
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 133/247 (53%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 113 GKNRGYAFVTYTHKHEAKRAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 172
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 173 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 232
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 233 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEEAIKKSFGQFNPGCVERV--------KK 284
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHF R A++A+ + E++G L+ +LAKP ++ + GG+ S+
Sbjct: 285 IRDYAFVHFVSREDAVRAMNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGGAASEV 344
Query: 236 SALNPTY 242
+ P Y
Sbjct: 345 TPQQPNY 351
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 131/225 (58%), Gaps = 12/225 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+T+ K A +A ++ + E+ GK +K + + A RLFIGN+P++ +++
Sbjct: 317 TGRNRGYAFLTYCDKTSAYEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEE 376
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + ++
Sbjct: 377 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNS 436
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ +G++ + +
Sbjct: 437 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AK 488
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ Y F+HF ER A+KA++ E++G +D SLAKPQ+D+K
Sbjct: 489 KIRDYAFIHFMEREPAIKAMEALNGTELEGIAIDISLAKPQSDKK 533
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+Y+ +PK++ +D L LF GKI + + P R+R Y F+ + +++SA +A K
Sbjct: 282 IYIGKIPKEVYEDTLITLFEDMGKIWDLRL-MMDPLTGRNRGYAFLTYCDKTSAYEAAKK 340
Query: 204 TEKYEI 209
+ YEI
Sbjct: 341 FDGYEI 346
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + T+E A +AI+ L++ E++ GK I + RLFIG++P++ +++
Sbjct: 94 SGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEE 153
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 154 IQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTI 213
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + +V+ LYV+NL T++ L+ F+ G + +V +
Sbjct: 214 QVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------K 265
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + Y F+HF R A+ AL++ IDG ++ +LAKP
Sbjct: 266 KLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 305
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + + +NRG+AF+ Y A+ + Q
Sbjct: 60 VFVGKIPRDMYEDELVPVFEQAG-HIYEFRLMM--EFSGENRGYAFVMYTTREKAQRAIQ 116
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE--LFAHHG 167
+ N + + VS + R L++ ++PKD ++ ++E + G
Sbjct: 117 LLDNYEIRPGKFIGVCVSLDNCR------------LFIGSIPKDKKKEEIQEEMMKVTEG 164
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKP--QA 223
+ +V P A + + FV + +A A + +++ G + A+P +
Sbjct: 165 VMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKEL 224
Query: 224 DQKT 227
D++T
Sbjct: 225 DEET 228
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 109 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 168
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 169 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 228
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 229 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 280
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHFA R A++A+ + E++G L+ +LAKP ++ S GG+ ++
Sbjct: 281 IRDYAFVHFASREDAVRAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEA 340
Query: 236 SALNPTY 242
+A P+Y
Sbjct: 341 AAQPPSY 347
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 1 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 60
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 61 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 120
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 121 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 172
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG ++
Sbjct: 173 IRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEA 232
Query: 236 SALNPTY 242
+ P+Y
Sbjct: 233 AVQQPSY 239
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 134/224 (59%), Gaps = 12/224 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGK-KIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAF F + E A +A+++LN ++K ++ + + K RL++G++P+N +D+
Sbjct: 208 TGQNRGYAFAAFTSIEGAREAVKQLNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDE 267
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ G++ + + K ++ +NRGFAF+E+ +H A +++K+++ + K+ +
Sbjct: 268 ILEEFAKVEKGLLDVIIYK-TEDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQIN 326
Query: 125 T-VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WADP +S S+VK +Y++NL + T+ ++KE F +G++ K ++
Sbjct: 327 VNVDWADPVIEPDSDTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEK--------AKK 378
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y FVHF ER +A+KA++ E +G ++ SLAKP + K
Sbjct: 379 MKDYCFVHFKERDAAVKAIEEMNGKEYEGTTIEVSLAKPPMENK 422
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEVAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHFA R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFASREDAVLAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 10/218 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF K+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 93 SGNNRGYAFVTFSNKQEAKAAMKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +A
Sbjct: 153 IMCEMRKVTEGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 212
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + + VK LYV+NL T++ +++ F ++ +V ++
Sbjct: 213 AVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNSLKEVERV--------KKI 264
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHFA+R A+ A+K +DG ++ +LAKP
Sbjct: 265 RDYAFVHFAQREDAIHAMKELNGKVVDGSPIEVTLAKP 302
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + ++ D + NRG+AF+ + N A+ + +
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGQ-IYEVRMMMD--FSGNNRGYAFVTFSNKQEAKAAMK 115
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R A+ L+V +PK T+ R +E+ K+T
Sbjct: 116 QLNNYEIRTG-----------RLLGVCASVDNCRLFVGGIPK--TKKR-EEIMCEMRKVT 161
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 162 EGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEV 221
Query: 224 D 224
+
Sbjct: 222 E 222
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD------QKTSGGSNSQKS 236
Y FVHF R A+ A+ N E++G L+ +LAKP QK + G ++ ++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA 339
Query: 237 ALNPTY 242
A P+Y
Sbjct: 340 AQQPSY 345
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 130/239 (54%), Gaps = 17/239 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + ++ RLFIG +P+ +++
Sbjct: 122 GKNRGYAFVMYTEKHEAKRAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEI 181
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V+K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 182 LEEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 241
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + +++ ++++F+ G + +V ++
Sbjct: 242 VDWAEPEIDVDEDVMETVKILYVRNLMMETSEEAIRQIFSQFNPGCVERV--------KK 293
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGSNSQKS 236
Y FVHF R A+ A+ N E++G ++ +LAKP + QK S G S S
Sbjct: 294 IRDYAFVHFTSRDDAVLAMDNLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGGASATS 352
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + E+ A +A++
Sbjct: 87 IFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDGKNRG-YAFVMYTEKHEAKRAVREL 145
Query: 205 EKYEI 209
YE+
Sbjct: 146 NNYEV 150
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHFA R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 119/217 (54%), Gaps = 10/217 (4%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ EL++ E++ G+ + + RLFIG +P+ D++
Sbjct: 107 GKNRGYAFVMYTHKREAKRAVRELDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEI 166
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAFIEY +H A +R+K+ + +L
Sbjct: 167 LEEISKVTEGVLDVIVYASATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIA 226
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V WA+P + + VK LYV+NL +++ +++ F+ G + +V ++
Sbjct: 227 VDWAEPEMDVDEDVMETVKILYVRNLMIKTSEETIRKTFSQFGCVERV--------KKIR 278
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF R A++A+ + E++G L +LAKP
Sbjct: 279 DYAFVHFTSREDAIRAMNSLNGTELEGSCLGVTLAKP 315
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHFA R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 132/247 (53%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHFA R A++A+ N E++G L+ +LAKP ++ S GG ++
Sbjct: 280 IRDYAFVHFASREDAVQAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEA 339
Query: 236 SALNPTY 242
+ P+Y
Sbjct: 340 AVQPPSY 346
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A+ A+ N E++G L+ +LAKP
Sbjct: 279 KIRDYAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHFA R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV F K A QA+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMFTKKHEAKQAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + ++D +K++F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETSEDTIKKIFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHF+ R A+++++ E++G ++ +LAKP ++ + GG+ +
Sbjct: 280 IRDYAFVHFSSREDAVQSMRKLNGTELEGSCIEVTLAKPVDKEQYTRYQKAAKGGAPATA 339
Query: 236 SALNPTYPPHL 246
+A T P ++
Sbjct: 340 TATEVTQPNYI 350
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV F ++ A +A++
Sbjct: 73 VFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFDGKNRG-YAFVMFTKKHEAKQAVREL 131
Query: 205 EKYEI 209
YEI
Sbjct: 132 NNYEI 136
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K++F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF R A+ A+ N E++G L+ +LAKP
Sbjct: 279 KIRDYAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 11/219 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV +++K A Q I++LN+ E++ G+ I ++ RLFIG +P+ ++
Sbjct: 83 SGNNRGYAFVVYQSKSAARQCIKQLNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREE 142
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK-MSNPKFKLDDNA 123
+R + KI V+ + + + +NRGFAF+EY NH A +R+K M+N +L +
Sbjct: 143 IRSEMAKITEHVVDVIVYPSASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHK 202
Query: 124 PTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+P + QVK +YV+NL T++ L+E+F ++ +V ++
Sbjct: 203 IAVDWAEPEIEVDEEIMDQVKIVYVRNLLLSTTEESLREIFQSIARVERV--------KK 254
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y F+HF + A A+ IDG ++ +LAKP
Sbjct: 255 IRDYAFIHFTSKEDAHMAITLKNGQIIDGSTVEVTLAKP 293
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIGP + + L+ D + NRG+AF+ Y + + A +
Sbjct: 49 VFIGKIPRDLFEDELVPVFEKIGP-IYEVRLMMD--FSGNNRGYAFVVYQSKSAARQCIK 105
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK-ELFAHHGKI 169
+++N + + S D N L++ +PK I ++ ++ E+ +
Sbjct: 106 QLNNYEIRQGRMIGVCSSVD--NCR---------LFIGGIPKTIKREEIRSEMAKITEHV 154
Query: 170 TKVVIPPAKPGQERSR-YGFVHFA-ERSSAM--KALKNTEKYEIDGQVLDCSLAKPQAD 224
V++ P+ + ++R + FV + R++AM + L N E+ G + A+P+ +
Sbjct: 155 VDVIVYPSASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHKIAVDWAEPEIE 213
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 251 GKNRGYAFVMYCHKADAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 310
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 311 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 370
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K++F G + +V ++
Sbjct: 371 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KK 422
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S
Sbjct: 423 IRDYAFVHFASREDAVHAMNHLNGTELEGSCLEVTLAKPVDKEQYS 468
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 133/247 (53%), Gaps = 19/247 (7%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 113 GKNRGYAFVTYTHKHEAKRAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 172
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 173 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 232
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 233 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEEAIKKSFGQFNPGCVERV--------KK 284
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHF R A++A+ + E++G L+ +LAKP ++ + GG+ S+
Sbjct: 285 IRDYAFVHFVSREDAVRAMNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGGAASEV 344
Query: 236 SALNPTY 242
+ P Y
Sbjct: 345 TPQQPNY 351
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 130/239 (54%), Gaps = 13/239 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + ++ RLFIG +P+ +++
Sbjct: 120 GKNRGYAFVMYTEKHEAKRAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEI 179
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V+K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 180 LEEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 239
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + ++ ++++F+ G + +V ++
Sbjct: 240 VDWAEPEIDVDEDVMETVKILYVRNLMMETNEETIRQIFSQWNPGCVERV--------KK 291
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
Y FVHF R A+ A+ N EI+G ++ +LAKP D++ + K A+ T
Sbjct: 292 IRDYAFVHFTSRDDAVLAMDNLNGTEIEGSCIEVTLAKP-VDKEQYSRQKASKGAIPAT 349
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + E+ A +A++
Sbjct: 85 IFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDGKNRG-YAFVMYTEKHEAKRAVREL 143
Query: 205 EKYEI 209
YE+
Sbjct: 144 NNYEV 148
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQ 234
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAE 339
Query: 235 KSALNPTY 242
A P+Y
Sbjct: 340 AVAQQPSY 347
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQ 234
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAE 339
Query: 235 KSALNPTY 242
A P+Y
Sbjct: 340 AVAQQPSY 347
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 134/249 (53%), Gaps = 11/249 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +G+ FVT++T+ + A++ +N+ E+ KG+ + + RLF+G +P++ D+
Sbjct: 111 NGNNRGFCFVTYQTRNESHAALKGINNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDE 170
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + ++NRGF+F+EY +H A +R+K+ + +L +
Sbjct: 171 IMEEMKKVTEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQI 230
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQE 182
V WA+P E S VK LYV+NL ++D L+ FA K+T K I K ++
Sbjct: 231 AVDWAEPEIEVEESVMETVKILYVRNLMLHTSEDTLEAAFA---KVTGKGTIERVKKIRD 287
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQKTSGGSNSQKSALN-P 240
Y FVHF R +A+KA+K IDG +++ LAKP D S++ + P
Sbjct: 288 ---YAFVHFNTRDNALKAMKELNNGMIDGALVEVVLAKPVDRDSYVRHSRASERKVIQAP 344
Query: 241 TYPPHLGYG 249
P L YG
Sbjct: 345 QMPMLLAYG 353
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ + GP + ++ D N N NRGF F+ Y + + +
Sbjct: 77 IFIGKLPRDLFEDELYPVLESYGPA-FELRMMLD-FNGN-NRGFCFVTYQTRNESHAALK 133
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGK 168
++N + + R + + L+V +PK +D + E G
Sbjct: 134 GINNLEIR-----------KGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKVTEGV 182
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQADQK 226
+ +V P A + + FV + + +A A + + ++ G + A+P+ + +
Sbjct: 183 VDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEPEIEVE 242
Query: 227 TS 228
S
Sbjct: 243 ES 244
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPMDKEQYS 325
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 141/275 (51%), Gaps = 24/275 (8%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AFV F TKE S+A+ E+ + ++GK+ +A++ LF+GN+ W ++ ++K +
Sbjct: 552 KGFAFVKFATKEQVSRALAEMKNPMIRGKRCGIAASEDNDTLFLGNICNTWTKEAIKKRL 611
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTV 126
G GV S+ LV D QN Q+RGFAF+E+ HA A + +++ P F + V
Sbjct: 612 LDYGIEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDAMFGHPERTAKV 671
Query: 127 SWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
++A+P + ++ +QVK++++ LP +DR+K+ F +G I +VV+ +R+
Sbjct: 672 AFAEPIKEPDAEVMAQVKSVFIDGLPPYWDEDRVKDRFKAYGVIERVVLASNMSSAKRND 731
Query: 186 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPH 245
+GFV+F+ +A+ ++ T E+ G + K + + P
Sbjct: 732 FGFVNFSTHEAALACIEATNNTEL-----------------GDDGKSKVKVRVRLSNPLP 774
Query: 246 LGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPG 280
+ GG G GY GF +P GRG + G
Sbjct: 775 KSQAVKGGMTGGFRIGYSGFGFNRP---GRGFSKG 806
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + R+ E+D+R ++G V+ + L KD N+N+GFAF+++ +
Sbjct: 513 IFVGGLNRDAVEEDIRSVFGQVG-DVVDVRLHKDLLT-NRNKGFAFVKFATKEQVSRALA 570
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-- 168
+M NP + + +A+ L++ N+ T++ +K+ +G
Sbjct: 571 EMKNPMIR------------GKRCGIAASEDNDTLFLGNICNTWTKEAIKKRLLDYGIEG 618
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEK 206
+ + + P + +SR + F+ F+ + AM A K ++
Sbjct: 619 VQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQ 657
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 122/219 (55%), Gaps = 12/219 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + ++ RLFIG +P+ +++
Sbjct: 119 GKNRGYAFVMYTQKHEAKRAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEI 178
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V+K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 179 LEEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 238
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + +++ L++ F G + +V ++
Sbjct: 239 VDWAEPEIDVDEDVMETVKILYVRNLMIETSEEILRQTFGQFNPGCVERV--------KK 290
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHFA R A+ A+ N EI+G ++ +LAKP
Sbjct: 291 IRDYAFVHFASRDDAVVAMDNLNGTEIEGSRIEVTLAKP 329
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQ 234
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAE 339
Query: 235 KSALNPTY 242
A P+Y
Sbjct: 340 AVAQQPSY 347
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 107 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 166
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 226
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 227 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 278
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 324
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 69 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 128
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 129 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 188
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 189 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 240
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 241 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + +S A +A++
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRG-YAFVMYCHKSEAKRAVREL 131
Query: 205 EKYEI 209
YEI
Sbjct: 132 NNYEI 136
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 144 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 203
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 204 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 263
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 264 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 315
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 316 IRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 361
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + +S A +A++
Sbjct: 109 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRG-YAFVMYCHKSEAKRAVREL 167
Query: 205 EKYEI 209
YEI
Sbjct: 168 NNYEI 172
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 109 DGKNRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 169 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 228
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 229 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 280
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S
Sbjct: 281 KIRDYAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPVDKEQYS 327
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F+ KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 65 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFIGGIPKMKKREEI 124
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 125 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 184
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 185 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 236
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 237 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 282
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 69 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 128
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 129 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 188
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 189 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 240
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 241 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 69 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 128
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 129 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 188
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 189 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 240
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 241 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 144 DGKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 203
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 204 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 263
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 264 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 315
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 316 KIRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 362
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 9/219 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFV + +++ A +A+++LN+ E+ KG+ + + RLF+G +P+N + +
Sbjct: 95 NGNNRGYAFVMYTSRDDAKRAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHE 154
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 155 ILEEMSKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQI 214
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + VK LYV+NL T++ LKE F + VV P + ++
Sbjct: 215 AVDWAEPEVEVDEDIMKSVKVLYVRNLLLTTTEESLKESFEN------VVSPGSVERVKK 268
Query: 184 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R Y FVHF R A+KA+ T IDG ++ +LAKP
Sbjct: 269 IRDYAFVHFKTREEAVKAMNATNGQLIDGCQVEVTLAKP 307
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 30/184 (16%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ IG + + L+ D N N NRG+AF+ Y + A+ + +
Sbjct: 61 VFVGKIPRDLFEDELVPVFESIG-KIYELRLMMD-FNGN-NRGYAFVMYTSRDDAKRAVK 117
Query: 111 KMSNPKF---KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
+++N + +L P+V L+V +PK+ + E+
Sbjct: 118 QLNNYEIRKGRLLGVCPSVDNCR--------------LFVGGIPKN---KKKHEILEEMS 160
Query: 168 KITK----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAK 220
K+T+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+
Sbjct: 161 KVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAE 220
Query: 221 PQAD 224
P+ +
Sbjct: 221 PEVE 224
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 69 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 128
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 129 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 188
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 189 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 240
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 241 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHFA R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFASREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 12/226 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 273 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 332
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 333 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 392
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WADP + + +VK LYV+NL T++ +K F G + +V +
Sbjct: 393 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV--------K 444
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 445 KLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 490
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLDVIVYAGAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 18/248 (7%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M +G++KGY FV F TKE A++AI+E + ++GKKI + + LF GN+P++W
Sbjct: 1 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 60
Query: 61 GEDDMRKAVTKIGPGVISIELV-------KDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
D+ K V + V S++L QNRGFAF+++ +HA A + + S
Sbjct: 61 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGS 120
Query: 114 NPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
F L D+ P V WA+ + +++ +V NLPKD +D LK+LF GK+ KV
Sbjct: 121 KSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKDANEDYLKKLFGPFGKVEKV 180
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV------LDCSLAKPQADQK 226
++ +K GQ S GFVHFA+RS A+K + + G L ++AKP ++
Sbjct: 181 LL--SKKGQ--SPVGFVHFAKRSDLDNAIKEMNEKTVQGPSRGPAFKLQVAVAKPLDRKR 236
Query: 227 TSGGSNSQ 234
SQ
Sbjct: 237 KRARDESQ 244
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 120/198 (60%), Gaps = 11/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYA +TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 261 SGQNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 320
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NR F F+EY +H A +R+++ + K K+ N
Sbjct: 321 ILEEFSKVTEGLVDVILYHQPDDKKKNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 379
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 380 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 431
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 432 KDYAFVHFEDRGAAVKAM 449
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 105/220 (47%), Gaps = 39/220 (17%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
SG+ +GYAF+TF KE A +A++ +F+G +PR+ ED++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVK---------------------LVFVGKIPRDLYEDEL 240
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA-P 124
K GP + + L+ DP + QNRG+A I + A+ + + + + + +
Sbjct: 241 VPLFEKAGP-IWDLRLMMDPLSG-QNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGV 298
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQER 183
+S A+ R L+V ++PK+ T++ + E F+ + + V++ +++
Sbjct: 299 CISVANNR------------LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKK 346
Query: 184 SRYGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
+R+ F+ + + SA +A + + K ++ G V+ A P
Sbjct: 347 NRFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 386
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 39/161 (24%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITF----C------ 214
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI- 169
+ +A VK ++V +P+D+ +D L LF G I
Sbjct: 215 -----------------------GKEAAQEAVKLVFVGKIPRDLYEDELVPLFEKAGPIW 251
Query: 170 -TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
++++ P GQ R Y + F + +A +A+K + YEI
Sbjct: 252 DLRLMMDPLS-GQNRG-YALITFCGKEAAQEAVKLCDSYEI 290
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F+ KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 132/245 (53%), Gaps = 17/245 (6%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + ++ RLFIG +P+ +++
Sbjct: 120 GKNRGYAFVMYTEKHEAKRAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEI 179
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V+K+ GVI + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 180 LEEVSKVTEGVIDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 239
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + +++ ++++F+ G + +V ++
Sbjct: 240 VDWAEPEIDVDEDVMETVKILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KK 291
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGSNSQKSA 237
Y FVHF R A+ A+ + E++G ++ +LAKP + QK S G+ + A
Sbjct: 292 IRDYAFVHFNSRDDAVLAMNHLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGAPATPEA 351
Query: 238 LNPTY 242
Y
Sbjct: 352 TQQNY 356
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + E+ A +A++
Sbjct: 85 IFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDGKNRG-YAFVMYTEKHEAKRAVREL 143
Query: 205 EKYEI 209
YE+
Sbjct: 144 NNYEV 148
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G ++GYAFVT+ KE A+ A ++ + E+ GK +K + + A RLF+GN+P+ +D+
Sbjct: 262 TGASRGYAFVTYCEKEHATNAAKKFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDE 321
Query: 65 MRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + + GV + + P N +NRGF F+++ +H A ++K++ K + +
Sbjct: 322 ILEELKSHAEGVTDVIVYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD 381
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+ + + S+VK LY++N+ + +T+++L ELF + + +V ++
Sbjct: 382 VYVDWAEQQEEPDEDTMSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRV--------KK 433
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
Y F+HF ER MKA++ E++G V++ SLA
Sbjct: 434 VKDYAFIHFNERDDCMKAMEQWNGKELEGTVVEASLA 470
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
+YV ++P D+ +D L LFA GKI ++++ P G R Y FV + E+ A A K
Sbjct: 227 IYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMT-GASRG-YAFVTYCEKEHATNAAK 284
Query: 203 NTEKYEI 209
+ +EI
Sbjct: 285 KFDGHEI 291
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGSVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 8/224 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K F K + + ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF------NKFKLGAVERVKKL 270
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 271 RDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 78 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 137
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 138 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 197
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 198 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 246
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 247 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 295
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 134/272 (49%), Gaps = 21/272 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + KE A AI LN+ E++ GK I A+ RLFIG++P+ ++D
Sbjct: 97 SGENRGYAFVMYTNKEEALLAIRMLNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKED 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+ Y +H A +R+K+ F+L
Sbjct: 157 ILEEMKKVTEGVMDVIVCPSATDKTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QE 182
V WADP + + +VK LYV+NL T++ +K F + KPG E
Sbjct: 217 KVDWADPEKEVDEETMQKVKVLYVRNLMMSTTEETIKAEFNRY-----------KPGVVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
R + Y FVHF R A+ A+ IDG ++ +LAKP K + + +
Sbjct: 266 RVKKIRDYAFVHFFRRDYAIAAMSEMNGRLIDGARIEVTLAKPV--NKEAAWRQNGNGHM 323
Query: 239 NPTYPPHLGYGMVGGAYGALG-AGYVPAGFAQ 269
NP L + G+ L VPA + Q
Sbjct: 324 NPNSECLLNFANKEGSQKVLDMCSNVPAYYNQ 355
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L LF GKI + + G+ R Y FV + + A+ A++
Sbjct: 63 VFVGKIPRDMYEDELVPLFERAGKIYEFRLMMEFSGENRG-YAFVMYTNKEEALLAIRML 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGTVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSIMNGKCIDGASIEVTLAKPVNKENT 314
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 130/238 (54%), Gaps = 12/238 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + ++ RLFIG +P+ +++
Sbjct: 127 GKNRGYAFVMYTEKHEAKRAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEI 186
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ V+K+ GVI + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 187 LEEVSKVTEGVIDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 246
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + +++ ++++F+ G + +V ++
Sbjct: 247 VDWAEPEIDVDEDVMETVKILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KK 298
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
Y FVHF R A+ A+ E++G ++ +LAKP ++ S S+ +A P
Sbjct: 299 IRDYAFVHFNSRDDAVLAMNQLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGAAATP 356
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + E+ A +A++
Sbjct: 92 IFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDGKNRG-YAFVMYTEKHEAKRAVREL 150
Query: 205 EKYEI 209
YE+
Sbjct: 151 NNYEV 155
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL +D +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTAEDTIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 323 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 382
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 383 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 442
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 443 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 491
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 492 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 540
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSAIDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKFIDGASIEVTLAKPVNKENT 314
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNRDDAVAAMSVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQ 234
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAE 339
Query: 235 KSALNPTY 242
A P+Y
Sbjct: 340 AVAQQPSY 347
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 111 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 170
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 171 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 230
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 231 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 279
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 280 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 328
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 107 GKNRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 166
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 226
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 227 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 278
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 324
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGTVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKFIDGASIEVTLAKPVNKENT 314
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG ++GYAFVT+ KE A+ A + + E+ GK +K + + A RLFIGN+P+ +D+
Sbjct: 237 SGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDE 296
Query: 65 MRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + + GV+ + + P N +NRGF F+++ +H A ++K++ K + +
Sbjct: 297 ILEELKTHAEGVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD 356
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+ + + S+VK LY++N+ + +T+++L ELF + + +V ++
Sbjct: 357 VYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLNELFKEYASLDRV--------KK 408
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
Y F+HF ER +KA++ E++G V++ SLA
Sbjct: 409 VKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLA 445
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEVIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 8/224 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K F K + + ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF------NKFKLGAVERVKKL 270
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 271 RDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ G+ I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEAAQLAIRILNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + GV+ + + + ++NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKNVTEGVVDVIVYPSATDKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R AM A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNRDDAMTAMSVMNGKYIDGAGIEVTLAKPVNKENT 314
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 23/247 (9%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAF+ + K A +A+ ELN+ E++ G+ + + RLFIG +P+
Sbjct: 108 GKNRGYAFIMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKL----KK 163
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
R+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 164 REEIAKVTEGVLDVIMYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 223
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 224 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 275
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG ++
Sbjct: 276 IRDYAFVHFTSREDAVHAMSNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEA 335
Query: 236 SALNPTY 242
A P+Y
Sbjct: 336 VAQPPSY 342
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 12/219 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYTHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF R A+ A+ + E++G L+ +LAKP
Sbjct: 280 IRDYAFVHFTSRDDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNRQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTEGVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R AM+A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAMEAMKALNGKVLDGSPIEVTLAKP 303
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNRQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + R+R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 12/219 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYTHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF R A+ A+ + E++G L+ +LAKP
Sbjct: 280 IRDYAFVHFTSREDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A+KA+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVKAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P + E++ + +++ LP+D+ +D L L GKI ++ + G R Y FV
Sbjct: 44 PPDWEAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRG-YAFVT 102
Query: 191 FAERSSAMKALKNTEKYEI-DGQVL 214
F+ + A A+K YEI +G++L
Sbjct: 103 FSNKQEAKNAIKQLNNYEIRNGRLL 127
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 26 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 85
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 86 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 145
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 146 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 194
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 195 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 243
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 SGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFNNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D + NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD--FSGNNRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 142/275 (51%), Gaps = 24/275 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL T++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF +R A++A+K +DG ++ +LAKP + + + G+ +
Sbjct: 261 RVKKIRDYAFVHFNKREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRG 320
Query: 236 SALNPTYPPHLGYGMVGGAYGALGA--GYVPAGFA 268
+ L Y G+ M A LGA Y P +A
Sbjct: 321 TMLQAEYTYAFGH-MYDPAAAYLGAPVFYAPQAYA 354
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 DGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 95 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 154
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 155 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 214
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 215 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 263
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF+ R A++A+K +DG ++ +LAKP + + + G+ +
Sbjct: 264 RVKKIRDYAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRG 323
Query: 236 SALNPTYPPHLGY 248
+ L Y LG+
Sbjct: 324 TVLQGEYTYSLGH 336
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 61 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 117
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 118 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 163
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 164 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 223
Query: 224 D 224
+
Sbjct: 224 E 224
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILLEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALHGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILLEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILLEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALHGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILLEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 93 NGNNRGYAFVTFSNKQEARAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +A
Sbjct: 153 ILSEMKKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 212
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + + VK LYV+NL T++ +++ F KPG E
Sbjct: 213 AVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNS-----------LKPGAVE 261
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF +R A+ A+K +DG ++ +LAKP
Sbjct: 262 RVKKIRDYAFVHFTQREDAINAMKALNGKVVDGSPIEVTLAKP 304
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + ++ D N N NRG+AF+ + N A + +
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGK-IYEVRMMMD-FNGN-NRGYAFVTFSNKQEARAAMK 115
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 116 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 161
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 162 DGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEV 221
Query: 224 D 224
+
Sbjct: 222 E 222
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 93 NGNNRGYAFVTFSNKQEARAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +A
Sbjct: 153 ILSEMKKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 212
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + + VK LYV+NL T++ +++ F KPG E
Sbjct: 213 AVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNS-----------LKPGAVE 261
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF +R A+ A+K +DG ++ +LAKP
Sbjct: 262 RVKKIRDYAFVHFTQREDAINAMKALNGKVVDGSPIEVTLAKP 304
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + ++ D N N NRG+AF+ + N A + +
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGK-IYEVRMMMD-FNGN-NRGYAFVTFSNKQEARAAMK 115
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 116 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 161
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 162 DGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEV 221
Query: 224 D 224
+
Sbjct: 222 E 222
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEARNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQ 181
V WA+P + S VK LYV+NL T++ +++ F + G + +V +
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERV--------K 263
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF +R A+ A+K +DG ++ +LAKP
Sbjct: 264 KIRDYAFVHFNKREDAVHAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEARNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 DGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEARNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQ 181
V WA+P + S VK LYV+NL T++ +++ F + G + +V +
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERV--------K 263
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF +R A+ A+K +DG ++ +LAKP
Sbjct: 264 KIRDYAFVHFNKREDAVHAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEARNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 DGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 103 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 162
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF++Y +H A +R+K+ F+L +
Sbjct: 163 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTI 222
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK L+V+NL T++ +K F KPG E
Sbjct: 223 QVDWADPEKEVDEETMQRVKVLFVRNLMISTTEETIKAEFNKF-----------KPGAVE 271
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 272 RVKKLRDYAFVHFFNREDAVAAMSVMSGKCIDGASIEVTLAKPVNKEST 320
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNRQEAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTEGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF+ R A++A+K +DG ++ +LAKP + + + G+ +
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRG 320
Query: 236 SALNPTYPPHLGY 248
S L Y LG+
Sbjct: 321 SMLQGEYTYSLGH 333
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNRQEAKDAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + R+R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 8 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 67
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 68 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 127
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 128 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 176
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 177 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 219
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 85 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 144
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 145 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 204
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 205 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 253
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 254 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 296
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 51 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 107
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 108 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 153
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 154 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 213
Query: 224 D 224
+
Sbjct: 214 E 214
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNRKDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNRKDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNRQEAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTEGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF+ R A++A+K +DG ++ +LAKP + + + G+ +
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRG 320
Query: 236 SALNPTYPPHLGY 248
S L Y LG+
Sbjct: 321 SMLQGEYTYSLGH 333
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNRQEAKDAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + R+R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 151/310 (48%), Gaps = 37/310 (11%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYTHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 235
Y FVHF R A+ A+ + E++G L+ +LAKP ++ + G + ++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGSATAEV 339
Query: 236 SALNPTY-----PPHLGY------GMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAM 284
+ P Y P L Y ++G +PA AQ ++ AP
Sbjct: 340 TPQQPNYVYSCDPYTLAYYSYPYNALIGPNRDYFVKVAIPAIGAQYSMFQTAPAPK---- 395
Query: 285 LPMLLPDGRI 294
+L DG+I
Sbjct: 396 ---MLEDGKI 402
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 12/219 (5%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 108 GKNRGYAFVMYTHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF R A+ A+ + E++G L+ +LAKP
Sbjct: 280 IRDYAFVHFTSRDDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 8/224 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI+ LN+ E++ GK I + RLFIG +P+ +D+
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIKFLNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + + +NRGFAF+EY +H A +R+++ F+L +
Sbjct: 157 ILNEMKKVTEGVVDVIVYPNATDKTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + + +VK LYV+NL T++ +K A K V+ K ++
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMMSTTEETIK---AEFNKFKPGVVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF K+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 93 SGNNRGYAFVTFSNKQEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +A
Sbjct: 153 IMCEMRKVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 212
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL T++ +++ F G + +V +
Sbjct: 213 AVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNSLKQGAVERV--------K 264
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF +R A+ A+ +DG ++ +LAKP
Sbjct: 265 KIRDYAFVHFTQREDAIHAMNALNGKVVDGSPIEVTLAKP 304
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + ++ D + NRG+AF+ + N A+ + +
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGK-IYEVRMMMD--FSGNNRGYAFVTFSNKQEAKAAMK 115
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ K+T
Sbjct: 116 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEIMCEMRKVT 161
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 162 DGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEV 221
Query: 224 D 224
+
Sbjct: 222 E 222
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 118/218 (54%), Gaps = 15/218 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLFIG +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ V K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEVKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL +++ ++ F + KP E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEIIEREFNN-----------IKP--EI 258
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF++R A++A+K +DG ++ +LAKP
Sbjct: 259 WDYAFVHFSKREDAVEAMKALNGKVLDGSPIEVTLAKP 296
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L++ +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFIGGIPK--TKKR-EEILSEVKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 100 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 159
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 160 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 219
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 220 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 268
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 269 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 311
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 66 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 122
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 123 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 168
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 169 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 202
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 114/202 (56%), Gaps = 13/202 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF T+ +E A +A+ EL+ E++ GK+I + RLF+G +PR +D
Sbjct: 101 AGSNRGYAFATYTNREDARRAVRELDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTRED 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNA 123
+ ++++ GV+++ L + +NRGFAF+EY +H A +R+KM K KL + +
Sbjct: 161 VFSEMSRVTEGVVNVILYTSVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHD 220
Query: 124 PTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPG 180
V WA+P + S+V LYV+NL T+D L+E+F+ +G K++KV
Sbjct: 221 VAVDWAEPEPQVDEDTMSKVMVLYVRNLVLSTTEDELREVFSLNGSLKVSKV-------- 272
Query: 181 QERSRYGFVHFAERSSAMKALK 202
++ + F+H+ R A AL+
Sbjct: 273 KKIRDFAFIHYRSREEATTALE 294
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 27/187 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR++ ED++ + +GP + + L+ D A NRG+AF Y N A + +
Sbjct: 67 VFIGKLPRDFFEDELVPLLETVGP-IYELRLMMD--FAGSNRGYAFATYTNREDARRAVR 123
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + + D N L+V +P+ T++ ++F+ ++T
Sbjct: 124 ELDEKEIRRGKRIGVCKSTD--NCR---------LFVGGIPRTKTRE---DVFSEMSRVT 169
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALK-----NTEKYEIDGQVLDCSLAK 220
+ V++ + + R+R + FV + + +A A + + + +D + +
Sbjct: 170 EGVVNVILYTSVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPE 229
Query: 221 PQADQKT 227
PQ D+ T
Sbjct: 230 PQVDEDT 236
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 100 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 159
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 160 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 219
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 220 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 268
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 269 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 311
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 66 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 122
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 123 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 168
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 169 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 202
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 120/218 (55%), Gaps = 8/218 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +G+AF+ F ++ A++AI+ +++ EL+ + I + RLFIG +P+ ++
Sbjct: 78 SGSNRGFAFIQFAHRQDANRAIQLMDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREE 137
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
++ + ++ GV + + + +NRGFAF+EY NH A +R+K+ + +L
Sbjct: 138 IQGEMERLTEGVTKVIVYSSITDKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEI 197
Query: 125 TVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P N E SQV LYV+NL T+ L+ELF +++ + K ++
Sbjct: 198 AVDWAEPENEIEEDVMSQVTVLYVRNLSLTTTEQVLRELF---NRVSDDNVQKLKMMRD- 253
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ F+HF+ R A KA++N EI+G ++ + AKP
Sbjct: 254 --FAFIHFSSREKAEKAMRNMNHTEINGTTIEITWAKP 289
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + + IGP + + L+ D + NRGFAFI++ + A + Q
Sbjct: 44 IFVGKLPRDVFEDELYRIFSTIGP-IYELRLMMDF--SGSNRGFAFIQFAHRQDANRAIQ 100
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRLK-ELFAHHGK 168
M N + + PR+ S L++ +PK +++ ++ E+
Sbjct: 101 LMDNYELR------------PRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERLTEG 148
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQ 222
+TKV++ + + ++R + FV + +A KA + ++ ++ G+ + A+P+
Sbjct: 149 VTKVIVYSSITDKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPE 205
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 18/227 (7%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
+ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P +
Sbjct: 84 DYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDD 143
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+
Sbjct: 144 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLF 203
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206
V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 204 VRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNG 255
Query: 207 YEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 246
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 256 KDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 301
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNRQEAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTEGVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSSREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ K+G + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKMGK-IYEMRMMMD-FNGN-NRGYAFVTFSNRQEAKDAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + R+R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 100 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 159
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 160 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 219
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 220 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 268
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 269 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 311
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 66 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 122
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 123 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 168
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 169 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 202
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 17/226 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GYAF++F A + +E + E++ K+ + + +Q +RLF+G++P+ + +
Sbjct: 205 TGQNRGYAFLSFVELSAARKCVEMYDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQE 264
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQ------NRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+ +K G+ + L + N+ NRGF F+EY H A +R+++ + + K
Sbjct: 265 ILDEFSKHTTGLTDVILYYQVEEKNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVK 324
Query: 119 LDDN-APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
+N TV WADP N +VK LYVKNL +++D + + FA G+I KV
Sbjct: 325 AWNNLIVTVDWADPINTPADDIMDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKV---- 380
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
++ Y FVHF R A A+ + ++GQ ++ LAKPQ
Sbjct: 381 ----KKLKDYAFVHFKNRDEARSAMTELNGFNLEGQCIEICLAKPQ 422
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA----CAE 106
+FIG +PR+ ED++ K G V L+ DP QNRG+AF+ + + C E
Sbjct: 170 VFIGKIPRDMFEDELVPLFEKCGL-VWDFRLMMDPMTG-QNRGYAFLSFVELSAARKCVE 227
Query: 107 -YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT-QDRLKELFA 164
Y R ++ + + V+ + P N L+V ++PK T Q+ L E
Sbjct: 228 MYDRFEIRSKR------ELHVTISQPNN----------RLFVGSIPKTKTKQEILDEFSK 271
Query: 165 HHGKITKVVI 174
H +T V++
Sbjct: 272 HTTGLTDVIL 281
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 158/333 (47%), Gaps = 42/333 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G+ +GY FV + + A +A+ LN+ E+ K + I + RLFIG +P+ +D+
Sbjct: 124 NGQNRGYGFVIYLSSRDAQRAVRTLNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDE 183
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + ++K+ V+++ + + ++NRGFAF+EY H A +R+K+ N K +L +
Sbjct: 184 ILEEISKVTDSVVNVIVYPSATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPI 243
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P ++ + QVK LY++NL + T++ ++ LF ++ +V ++
Sbjct: 244 AVDWAEPEQDIDEDIMDQVKVLYIRNLQLNTTEETIENLFKKFAEVERV--------KKI 295
Query: 184 SRYGFVHFAERSSAMKALKNTEK---YEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
Y FVHF R A AL++ + IDG ++ +LAKP D++ + +
Sbjct: 296 KDYCFVHFVTREGARLALESVKANNGESIDGAKIEVTLAKP-VDKEHYRQQKAVAKLMQ- 353
Query: 241 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 300
+ Y ++P+ F GG+ P LP ++G
Sbjct: 354 ----------MANQY-----QHIPS-FPHDFFPFNNQMHGGLMYPPPFLPSSQVGV---- 393
Query: 301 PGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNG 333
P + R GR AGS S+GGR NG
Sbjct: 394 ------RPLARGR-GRTAAGSRSAGGRAYILNG 419
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K+G + + L+ D QNRG+ F+ Y + A+ + +
Sbjct: 90 VFVGKLPRDCYEDELVPVFEKVG-TIYELRLMMD--YNGQNRGYGFVIYLSSRDAQRAVR 146
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR-LKELFAHHGKI 169
++N + + D N L++ +PK + +D L+E+ +
Sbjct: 147 TLNNYEIRKSRLIGVCHSVD--NCR---------LFIGGIPKKVKKDEILEEISKVTDSV 195
Query: 170 TKVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
V++ P+ + ++R + FV + RS+AM K K ++ G + A+P+ D
Sbjct: 196 VNVIVYPSATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQD 253
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 66 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 125
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 126 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 185
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 186 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 234
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 235 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 277
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 32 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 88
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 89 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 134
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 135 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 194
Query: 224 D 224
+
Sbjct: 195 E 195
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 75 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 134
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 135 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 194
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 195 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 243
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 244 RVKKIRDYAFVHFSNRKDAVEAMKALNGKVLDGSPIEVTLAKP 286
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 41 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 97
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 98 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 143
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 144 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 203
Query: 224 D 224
+
Sbjct: 204 E 204
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI+ LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKTLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL T++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF +R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFNKREHAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 TLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMKKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 DGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 66 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 125
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 126 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 185
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 186 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 234
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 235 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 277
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 32 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 88
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 89 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 134
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 135 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 194
Query: 224 D 224
+
Sbjct: 195 E 195
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMRKVTEGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNRDDAIEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMRKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 66 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 125
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 126 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 185
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 186 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 234
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 235 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 277
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 32 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 88
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 89 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 134
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 135 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 194
Query: 224 D 224
+
Sbjct: 195 E 195
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMRKVTEGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNRDDAIEAMKALNGKVLDGSPIEVTLAKP 303
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMRKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G ++GYAFVT+ KE A+ A + + E+ GK +K + + A RLF+GN+P+ +D+
Sbjct: 255 TGASRGYAFVTYCEKEHAANAAKTYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDE 314
Query: 65 MRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + + GV + + P N +NRGF F+++ +H A ++K++ K + +
Sbjct: 315 ILEELKTHAEGVTDVIVYSVPDNDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD 374
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+ + + S+VK LY++N+ + +T+++L E+F + + +V ++
Sbjct: 375 VYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLTEIFKEYASLDRV--------KK 426
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
Y F+HF ER MKA++ E++G V++ SLA
Sbjct: 427 VKDYAFIHFNEREDCMKAMEQWNGKELEGTVVEASLA 463
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
H +++G++P + ED + K G + + L+ DP +RG+AF+ Y C
Sbjct: 218 HEIYVGHIPNDIFEDTLVPLFEKSGK-IWDLRLMMDPMTG-ASRGYAFVTY----C---E 268
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR-LKELFAHHG 167
++ +N D + +S P S A+ L++ N+PK ++D L+EL H
Sbjct: 269 KEHAANAAKTYDGHE--ISTGKPLKVNVSIANT--RLFLGNIPKTKSKDEILEELKTHAE 324
Query: 168 KITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEI 209
+T V++ P ++ R + FV F + +A + +++I
Sbjct: 325 GVTDVIVYSV-PDNDKIRNRGFCFVDFIDHKTASDIKRKIAQHKI 368
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 133/253 (52%), Gaps = 21/253 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILLEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSLVKILYVRNLMLSTSEEMIEKEFNN-----------VKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF+ R A++A+K +DG ++ +LAKP + + + G+ +
Sbjct: 261 RVKKIRDYAFVHFSHREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRA 320
Query: 236 SALNPTYPPHLGY 248
+ L Y LG+
Sbjct: 321 TMLQGDYTYSLGH 333
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPICEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILLEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEIIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 120/213 (56%), Gaps = 11/213 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+ F +K+ A++A++ ++ E++ +K + + A +RLF+G++P+N +
Sbjct: 204 SGQNRGYAFINFCSKDAAAEAVKLCDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRES 263
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ +K+ G+ + L P + NRGF F+EY +H A +R+ + + K + N
Sbjct: 264 ILDDFSKVTEGLQEVILYHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPV 323
Query: 125 TVSWADPRNAESS--AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
TV WA+P + A+Q K L+V+ L +T++ L + F+ GK+ +V +
Sbjct: 324 TVEWANPVTERDTDVMANQAKVLFVRKLATSVTEELLVKTFSAFGKLERVY--------K 375
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
Y FVHF +R +A+KA+ + E+ G+ ++
Sbjct: 376 LKDYAFVHFEDRDAAVKAMVDMNGKELGGEAIE 408
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + C+ +
Sbjct: 169 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFINF----CS----K 218
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL DN S S A ++ L+V ++PK+ T++ + + F+ +
Sbjct: 219 DAAAEAVKLCDNYEIRSRKHLGVCISVANNR---LFVGSIPKNKTRESILDDFSKVTEGL 275
Query: 171 KVVIPPAKPGQERSRYG--FVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQADQK 226
+ VI +P + + G F+ + + SA +A + + K + G + A P ++
Sbjct: 276 QEVILYHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERD 335
Query: 227 TSGGSNSQK 235
T +N K
Sbjct: 336 TDVMANQAK 344
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 126/246 (51%), Gaps = 44/246 (17%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPP 244
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 245 HLGYGM 250
+ YG+
Sbjct: 396 YYYYGL 401
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 126/246 (51%), Gaps = 44/246 (17%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPP 244
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 245 HLGYGM 250
+ YG+
Sbjct: 396 YYYYGL 401
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ L++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETLEKEFNS-----------IKPGSVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A+ A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFNNRDDAVNAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELVPLCEKIGK-IYEVRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ L++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETLEKEFNS-----------IKPGSVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A+ A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFNNRDDAVNAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELVPLCEKIG-KIYEVRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TK+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSTKQEAKNAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + + VK LYV+NL T++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF++R A+ A+ IDG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSQREDAINAMNALNGKVIDGSPIEVTLAKP 303
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P E S + ++V LP+D+ +D L L GKI +V + G R Y FV
Sbjct: 44 PPGWEGSPPERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRG-YAFVT 102
Query: 191 FAERSSAMKALKNTEKYEI-DGQVL 214
F+ + A A+K YEI +G++L
Sbjct: 103 FSTKQEAKNAMKQLNNYEIRNGRLL 127
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M +G++KGY FV F TKE A++AI+E + ++GKKI + + LF GN+P++W
Sbjct: 208 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 267
Query: 61 GEDDMRKAVTKIGPGVISIELV-------KDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
D+ K V + V S++L QNRGFAF+++ +HA A + + S
Sbjct: 268 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGS 327
Query: 114 NPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
F L D+ P V WA+ + +++ +V NLPKD +D LK+LF GK+ KV
Sbjct: 328 KSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKDANEDYLKKLFGPFGKVEKV 387
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAM 198
++ +K GQ S GFVHFA+RS +
Sbjct: 388 LL--SKKGQ--SPVGFVHFAKRSCLL 409
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TK+ A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSTKQEAKNAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY H A +R+K+ + +L +
Sbjct: 152 ILAEMKKVTDGVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + + VK LYV+NL T++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF++R A+ A+ IDG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSQREDAINAMNALNGKVIDGSPIEVTLAKP 303
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P E S + ++V LP+D+ +D L L GKI +V + G R Y FV
Sbjct: 44 PPGWEGSPPERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRG-YAFVT 102
Query: 191 FAERSSAMKALKNTEKYEI-DGQVL 214
F+ + A A+K YEI +G++L
Sbjct: 103 FSTKQEAKNAMKQLNNYEIRNGRLL 127
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI +LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEARNAIRQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEIKKVTDGVVDVIVYPSAADKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL T++ +++ F+ KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSAVKILYVRNLMLSTTEETIEKEFSS-----------IKPGSVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A++A+K +DG + +LAKP
Sbjct: 261 RVKKIRDYAFVHFNNREDAVEAMKVLNGKMVDGSPIKVTLAKP 303
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKQEARNAIR 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEIKKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 DGVVDVIVYPSAADKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 8/218 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI+ LN+ E++ GK I + RLFIG +P++ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIKILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + + +NRGFAF+EY +H A +R+++ F+ +
Sbjct: 157 ILNEMKKVTEGVVDVIVYPNATDKTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTI 216
Query: 125 TVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WADP + +VK LYV+NL T+D++K A K V+ K ++
Sbjct: 217 QVDWADPEKIVDEETMQRVKVLYVRNLMISTTEDKIK---AEFNKFKPGVVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF R A+ A+ IDG ++ +LAKP
Sbjct: 273 --YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP 308
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F GKI ++ + G+ R Y FV + + A A+K
Sbjct: 63 VFVGKIPRDMYEDELVPVFGRAGKIYELRLMMEFSGENRG-YAFVMYTTKEEAQLAIKIL 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 18/224 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG KGYAFVT+ K A++A ++ E+K GK+++ + + A RLF+GN+P++ G++D
Sbjct: 251 SGTNKGYAFVTYCDKSSATEAAKKFEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKED 310
Query: 65 MRKAVTKIGPGVISIELV------KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+ + +K+ GV +I V DP N +NRGF F+E+ +H A +++++ + +F+
Sbjct: 311 IMEEFSKVS-GVQNITDVIMYSNPNDPVN-KKNRGFCFLEFADHKSASQAKRRLGSSRFR 368
Query: 119 LDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
V WA+ ++ + S+VK LY++ L ++++ L+ F+ +G + +V
Sbjct: 369 PWMMELVVEWAETQDDVDKETMSKVKILYLRPLKDSVSEEELRVRFSQYGTVERV----- 423
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHFAER A KA++ + E DG + S AKP
Sbjct: 424 ---KRIKDYAFVHFAEREQAEKAIEAMKGQEFDGVPCEVSFAKP 464
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+Y+ +PK I +D L LF GKI + + Y FV + ++SSA +A K
Sbjct: 216 IYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAKKF 275
Query: 205 EKYEI 209
E YEI
Sbjct: 276 EGYEI 280
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV 367
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 220
Query: 110 QKMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 268
Query: 169 -ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ KGY FV +R A +AI E + ++ GK + + R+F+GN+ + W ++D+
Sbjct: 273 AGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDV 332
Query: 66 RKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
K + KIG + S+ L D N NRGFAF+E A + +K+S
Sbjct: 333 IKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNI 392
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V+WA+P N QVK+++V +P +LKE+F HGKI VV+ P +R
Sbjct: 393 RVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRR 452
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQ----VLDCSLAKPQADQKTS 228
+ F+++ R +A+ L++ +K E + SLAKP K +
Sbjct: 453 DFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQT 500
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 117/212 (55%), Gaps = 8/212 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK +G+ KGYAF+ F + +A +A +L E++G+ ++ LF+GN+ + W
Sbjct: 50 MKNAQTGKNKGYAFIRFASAAIAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLW 109
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNH--ACAEYSRQKMSNPKF 117
++ + + + K V I L++DPQ NRGFAFIE+ H A + R + ++ F
Sbjct: 110 KKETVLETLKKFAIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVF 169
Query: 118 KLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
D +A ++WA P N + SQVK+++V +P + ++KELF +G + ++V+
Sbjct: 170 GTDRSAK-IAWAQPLNEPDEDIMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLAR 228
Query: 177 AKPGQERSRYGFVHFAERSSAM---KALKNTE 205
+R +GFV++ ER +A+ AL NTE
Sbjct: 229 NMLSAKRKDFGFVNYVERDAALLCIDALNNTE 260
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 161/332 (48%), Gaps = 40/332 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFTNRQDARDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMRKVTDGVLDVIVYPSAADKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL ++ +++ F+ KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSS-----------VKPGSVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF R+ A+ A+ IDG ++ +LAKP ++ + + G+ +
Sbjct: 261 RVKKIRDYAFVHFRNRADAVDAMNVLNGKIIDGSPIEVTLAKPVDKESYVRYTRGTGGRG 320
Query: 236 SALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
+A+ Y +G+ + LGA P+ Y A P A +P + G
Sbjct: 321 AAIQGEYTYTIGH-VYDPTTAYLGA---------PVFY---APPAYTAAIPSIQFPPVKG 367
Query: 296 YVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGR 327
YV + V+ PP R G AG GGR
Sbjct: 368 YVNNRSLVR----PPSVRV--GAAGVRGLGGR 393
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ K G + + ++ D N N NRG+AF+ + N A + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTGK-IYEMRMMMD-FNGN-NRGYAFVTFTNRQDARDAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK---TKRREEILAEMRKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 DGVLDVIVYPSAADKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 130/253 (51%), Gaps = 21/253 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + + RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETIEKEFDS-----------IKPGSVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQK 235
R + Y FVHF R A+ A+K +DG ++ +LAKP + + + G+ +
Sbjct: 261 RVKKIRDYAFVHFNNREDAVNAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRG 320
Query: 236 SALNPTYPPHLGY 248
+ L +P LG+
Sbjct: 321 AVLQGEHPYPLGH 333
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI-DGQVL 214
YEI +G++L
Sbjct: 117 NNYEIRNGRLL 127
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 1/205 (0%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ KGY FV +R A +AI E + ++ GK + + R+F+GN+ + W ++D+
Sbjct: 47 AGKNKGYCFVRYRHAAQAKKAIAEFGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDV 106
Query: 66 RKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
K + KIG + S+ L D N NRGFAF+E A + +K+S
Sbjct: 107 IKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNI 166
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V+WA+P N +QVK+++V +P +LKE+F HGKI VV+ P +R
Sbjct: 167 RVAWAEPLNDPDEKDAQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRR 226
Query: 185 RYGFVHFAERSSAMKALKNTEKYEI 209
+ F+++ R +A+ L++ +K E
Sbjct: 227 DFAFINYITREAAISCLESFDKEEF 251
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ KGY FV +R A +AI E + ++ GK + + R+F+GN+ + W ++D+
Sbjct: 273 AGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDV 332
Query: 66 RKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
K + KIG + S+ L D N NRGFAF+E A + +K+S
Sbjct: 333 IKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNI 392
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V+WA+P N QVK+++V +P +LKE+F HGKI VV+ P +R
Sbjct: 393 RVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRR 452
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQ----VLDCSLAKPQADQKTS 228
+ F+++ R +A+ L++ +K E + SLAKP K +
Sbjct: 453 DFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQT 500
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILAEMRKVTEGVVEVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ ++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETIEREFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A+ A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFNNREDAVGAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFVGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ A K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILAEMRKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVEVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P E++A + ++V LP+D+ +D L L GKI ++ + G R Y FV
Sbjct: 44 PPGWEAAAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRG-YAFVT 102
Query: 191 FAERSSAMKALKNTEKYEI-DGQVL 214
F+ + A A+K YEI +G++L
Sbjct: 103 FSNKQEAKNAIKQLNNYEIRNGRLL 127
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + KE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTMKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF++Y +H +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK L+V+NL T++ +K G+ K KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLFVRNLMISTTEETIK------GEFNKF-----KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMSGKCIDGASIEVTLAKPVNKEST 314
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 5/218 (2%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GY F + +E +A++ L++ E+ KGK I + RLF+G +P+N ++
Sbjct: 138 NGTNRGYGFCVYTNREDTKKAVQALDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREE 197
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + ++ GV + + ++NRGFAF+EY +H A +R+K+ K +L +
Sbjct: 198 IMAEMKRVTEGVKDVISYPSVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQI 257
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P R S+VK LYV+NL T+D L+E F I K +
Sbjct: 258 AVDWAEPEREVNEDIMSKVKILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVK---KI 314
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
S Y F+HF ER A + L+ IDG ++ + AKP
Sbjct: 315 SDYAFIHFKEREQAARCLEALNDTLIDGSKIEVTWAKP 352
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 2 NGNNRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 61
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +A
Sbjct: 62 ILTEMRKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 121
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL T++ +++ F G + +V +
Sbjct: 122 AVDWAEPEVEVDEDTMASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERV--------K 173
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF +R A+ A+ +DG ++ +LAKP
Sbjct: 174 KIRDYAFVHFTQREDAINAMNALNGKVVDGSPIEVTLAKP 213
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 125/217 (57%), Gaps = 11/217 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G ++GYAFVT+ KE A+ A ++ + EL GK +K + + A RLF+GN+P+ +D+
Sbjct: 246 TGASRGYAFVTYCNKEDAAAAAKKFDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDE 305
Query: 65 MRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + + GV + + P N +NRGF F+++ +H A ++K++ K + +
Sbjct: 306 ILEELKTHAEGVTDVIVYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD 365
Query: 124 PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+ ++ ++ S+VK LY++N+ + +T+++L ELF + + +V ++
Sbjct: 366 VYVDWAEHQDEPDADTMSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRV--------KK 417
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
Y F+HF ER +KA++ +++G +++ SLA
Sbjct: 418 VKDYAFIHFNERDDCVKAMEEWNGKDLEGTIVEASLA 454
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + KE A AI LN+ E+ +GK I + RLFIG++P+ +++
Sbjct: 97 SGENRGYAFVMYTNKEEALLAIRMLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+ Y +H A +R+K+ F+L +
Sbjct: 157 ILEEMKKVTEGVMDVIVYPSATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QE 182
V+WA P + + +VK LYV+NL T++ +K F + KPG E
Sbjct: 217 KVAWASPEKEVDEETMQKVKVLYVRNLMMSTTEETIKAEFNRY-----------KPGVVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A+ A+ IDG ++ +LAKP
Sbjct: 266 RVKKIRDYAFVHFFRRDYAIAAMSVMNGRLIDGARIEVTLAKP 308
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D+L LFA GKI + + G+ R Y FV + + A+ A++
Sbjct: 63 VFVGKIPRDMYEDKLVPLFARAGKIYEFRLMMEFSGENRG-YAFVMYTNKEEALLAIRML 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ KGY FV +R A +AI E + ++ GK + + R+F+GN+ + W ++D+
Sbjct: 47 AGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDV 106
Query: 66 RKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
K + KIG + S+ L D N NRGFAF+E A + +K+S
Sbjct: 107 IKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNI 166
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V+WA+P N QVK+++V +P +LKE+F HGKI VV+ P +R
Sbjct: 167 RVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRR 226
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQ----VLDCSLAKPQADQKTS 228
+ F+++ R +A+ L++ +K E + SLAKP K +
Sbjct: 227 DFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQT 274
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 164/348 (47%), Gaps = 29/348 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +G+AFV + A A+++LN+ E+ KG+ + + RLF+G +P+ +++
Sbjct: 138 NGNNRGFAFVKYCAASEARAALKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEE 197
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV + + + +NRGFAF+EY +H A +R+K+ + + ++ +
Sbjct: 198 ILIEMKKVTEGVCDVIVYPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPI 257
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAH---HGKITKVVIPPAKPG 180
V WA+P + + VK LYV+NL + T+++L+ F+ G I +V
Sbjct: 258 AVDWAEPEVEVDDDIMATVKILYVRNLMLNTTEEQLEAEFSALVPSGSIERV-------- 309
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 240
++ YGFVHF R +A+K LK +DG ++ +LAKP D++T + +
Sbjct: 310 KKIRDYGFVHFNTRENAIKCLKQLNGKILDGSPMEVTLAKP-VDRETYVRYTRAANRVVE 368
Query: 241 TYPPHLGYGMVGGAY----GALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI-- 294
T P G V Y A Y AG P+ YG P G +P L R
Sbjct: 369 TQEPLTIPGYVATTYDPRFDPASAAYSYAG--GPIYYG---VPYGATTIPTLASSPRFAV 423
Query: 295 ----GYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSR 338
G V Q PG+ G GA + +G + + RGR+R
Sbjct: 424 PPLRGGVPQVPGMVTQIGAAGVPLGIPGATTGIAGAQGRGISLRGRNR 471
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + K G + + L+ D N N NRGFAF++Y + A + +
Sbjct: 104 VFVGKLPRDLYEDELVPVLEKCG-RIYELRLMMD-FNGN-NRGFAFVKYCAASEARAALK 160
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++N F++ R + L+V +PK + +E+ K+T
Sbjct: 161 DLNN--FEIRKG---------RLLGVCKSVDNCRLFVGGIPK---TKQKEEILIEMKKVT 206
Query: 171 K-----VVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLAKPQA 223
+ +V P A Q+ + FV + + +A A + + +I G + A+P+
Sbjct: 207 EGVCDVIVYPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPIAVDWAEPEV 266
Query: 224 D 224
+
Sbjct: 267 E 267
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A A+++LN+ E++ G+ + A+ RLF+G +P+ D+
Sbjct: 93 NGNNRGYAFVTFSNKQEAKTAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L
Sbjct: 153 ILTEMKKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPI 212
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + + VK LYV+NL T++ ++ F KPG E
Sbjct: 213 AVDWAEPEVEVDDDTMATVKILYVRNLMLQTTEETIEREFNS-----------LKPGAVE 261
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF +R A+ A+ ++G ++ +LAKP
Sbjct: 262 RVKKIRDYAFVHFCQREDAINAMNALNGKLVEGSPIEVTLAKP 304
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 75/151 (49%), Gaps = 17/151 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K G + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGK-IYEVRMMMD-FNGN-NRGYAFVTFSNKQEAKTAMK 115
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR-LKELFAHHGKI 169
+++N + + + R A+ L+V +PK +D L E+ +
Sbjct: 116 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGV 164
Query: 170 TKVVIPPAKPGQERSR-YGFVHF-AERSSAM 198
V++ P+ + ++R + FV + + R++AM
Sbjct: 165 VDVIVYPSAADKSKNRGFAFVEYESHRAAAM 195
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V LP+D+ +D L L GKI +V + G R Y FV F+ + A A+K
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRG-YAFVTFSNKQEAKTAMKQL 117
Query: 205 EKYEI-DGQVL 214
YEI +G++L
Sbjct: 118 NNYEIRNGRLL 128
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 196 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 255
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 256 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 293
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 294 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 333
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 334 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 392
Query: 243 -----PPHL 246
PPH+
Sbjct: 393 YYYYGPPHM 401
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILLEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P + S VK LYV+NL +++ +++ F G + +V +
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------K 263
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 264 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 22/147 (14%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAI 113
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
++++N + + + R A+ L+V +PK T+ R +E+ K+
Sbjct: 114 KQLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILLEMKKV 159
Query: 170 TK----VVIPPAKPGQERSR-YGFVHF 191
T+ V++ P+ + ++R + FV +
Sbjct: 160 TEGVVDVIVYPSAADKTKNRGFAFVEY 186
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 44/222 (19%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFVTF +KE A +A++ N+ E++ GK+I + A +RLF+G++P++ ++
Sbjct: 199 SGLNRGYAFVTFCSKEAAQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L PQ+ ++NRGF F+EY +H
Sbjct: 259 IVEEFSKVTEGLSDVILYLQPQDKSKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ +G + +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANSVTEEILEKSFSEYGNLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
Y F+HF ER A+KAL+ E++G+ ++ AKP DQK
Sbjct: 337 DYAFIHFEERDGAVKALEEMNGKELEGEPIEIVFAKP-PDQK 377
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 13/221 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIG-NVPRNWGED 63
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G + P+ +
Sbjct: 92 NGNNRGYAFVTFSNKQEARNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKRE 151
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 EILAEMKKVTDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP 211
Query: 124 PTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPG 180
V WA+P + S VK LYV+NL T++ +++ F + G + +V
Sbjct: 212 IAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERV-------- 263
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
++ Y FVHF +R A+ A+K +DG ++ +LAKP
Sbjct: 264 KKIRDYAFVHFNKREDAVDAMKALNGKVLDGSPIEVTLAKP 304
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +G+AFV + TKE A AI+ LN+ E++ G+ I + RLFIG +PR +++
Sbjct: 97 SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K + +I GV+ + + D + +NRGFAF+EY +H A +R+++ F+L A
Sbjct: 157 ILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAV 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA P + ++ +VK LYV+NL T+D +K A K V+ K ++
Sbjct: 217 QVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLAKPVNKEST 314
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +G+AFV + TKE A AI+ LN+ E++ G+ I + RLFIG +PR +++
Sbjct: 97 SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ K + +I GV+ + + D + +NRGFAF+EY +H A +R+++ F+L A
Sbjct: 157 ILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAV 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA P + ++ +VK LYV+NL T+D +K A K V+ K ++
Sbjct: 217 QVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD- 272
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 273 --YAFVHFYNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 IVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 196 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 255
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 256 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 293
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 294 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 333
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 334 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 392
Query: 243 -----PPHL 246
PPH+
Sbjct: 393 YYYYGPPHM 401
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV + T+E +A+++LN+ E+ KG+ + + RLF+G +P+N +++
Sbjct: 94 SGSNRGYAFVMYTTREDGKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEE 153
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ V+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 154 ILAEMAKVTEQVVDVIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQI 213
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P ++ + VK LYV+NL T++ + + F G + +V +
Sbjct: 214 MVDWAEPEQDVDEDVMRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------K 265
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + F+HF R A+ A+ + +DG ++ LAKP
Sbjct: 266 KLRDFAFIHFFTREDALNAMNAMDDPLLDGAKIEVVLAKP 305
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ KIG + + L+ D + NRG+AF+ Y + + +
Sbjct: 60 VFVGKIPRDLFEDELVPVFMKIGK-IYELRLMMD--FSGSNRGYAFVMYTTREDGKKAVK 116
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R + L+V +PK+ Q+ E+ A K+T
Sbjct: 117 QLNNYEIR-----------KGRYLGVCPSVDNCRLFVGGIPKNKKQE---EILAEMAKVT 162
Query: 171 K----VVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + +A A + + ++ G + A+P+
Sbjct: 163 EQVVDVIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQ 222
Query: 224 D 224
D
Sbjct: 223 D 223
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P E + S+ ++V +P+D+ +D L +F GKI ++ + G R Y FV
Sbjct: 46 PPGWEGAQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGSNRG-YAFVM 104
Query: 191 FAERSSAMKALKNTEKYEI 209
+ R KA+K YEI
Sbjct: 105 YTTREDGKKAVKQLNNYEI 123
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 116/204 (56%), Gaps = 4/204 (1%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AFV F KE ++A+ E+ + + GK+ +A++ LF+ N+ W ++ ++K +
Sbjct: 285 KGFAFVRFANKEQVARALAEMKNPMIHGKRCGVAASEDNDTLFLCNICNTWTKEAIKKRL 344
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTV 126
G GV S+ LV D QN Q+RGFAF+E+ HA A + +++ P F + V
Sbjct: 345 LDYGVEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDALFGHPERTAKV 404
Query: 127 SWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
++A+P + A++ +QVK++++ LP ++R+K F +G I +VV+ +R+
Sbjct: 405 AFAEPIKEADAEVMAQVKSVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKRND 464
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
+GFV+F+ A+ ++ T E+
Sbjct: 465 FGFVNFSTHEEALACIEATNNTEL 488
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKI 72
R E QA E+ E + +K+ A+ + R +F+G + R E+D+RK +++
Sbjct: 209 RAAEKHGQAAGEVKENEDE-RKVMSDMAKNRQRKKELEIFVGGLDREAVEEDIRKVFSQV 267
Query: 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132
G V+ + L KD + ++N+GFAF+ + N + +M NP +
Sbjct: 268 G-DVVEVRLHKD-FSTSKNKGFAFVRFANKEQVARALAEMKNPMIH------------GK 313
Query: 133 NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSR-YGFV 189
+A+ L++ N+ T++ +K+ +G + + + P + +SR + F+
Sbjct: 314 RCGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRGFAFL 373
Query: 190 HFAERSSAMKALKNTEK 206
F+ + AM A K ++
Sbjct: 374 EFSCHADAMLAFKRLQQ 390
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV + T+E +A+++LN+ E+ KG+ + + RLF+G +P+N +++
Sbjct: 94 SGSNRGYAFVMYTTREDGKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEE 153
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ V+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 154 ILAEMAKVTEQVVDVIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQI 213
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P ++ + VK LYV+NL T++ + + F G + +V +
Sbjct: 214 MVDWAEPEQDVDEDVMRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------K 265
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + F+HF R A+ A+ + +DG ++ LAKP
Sbjct: 266 KLRDFAFIHFFTREDALNAMNAMDDPLLDGAKIEVVLAKP 305
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ KIG + + L+ D + NRG+AF+ Y + + +
Sbjct: 60 VFVGKIPRDLFEDELVPVFMKIGK-IYELRLMMD--FSGSNRGYAFVMYTTREDGKKAVK 116
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R + L+V +PK+ Q+ E+ A K+T
Sbjct: 117 QLNNYEIR-----------KGRYLGVCPSVDNCRLFVGGIPKNKKQE---EILAEMAKVT 162
Query: 171 K----VVIPPAKPGQERSR-YGFVHFA-ERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + R++AM K + ++ G + A+P+
Sbjct: 163 EQVVDVIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQ 222
Query: 224 D 224
D
Sbjct: 223 D 223
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P E + S+ ++V +P+D+ +D L +F GKI ++ + G R Y FV
Sbjct: 46 PPGWEGAQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGSNRG-YAFVM 104
Query: 191 FAERSSAMKALKNTEKYEI 209
+ R KA+K YEI
Sbjct: 105 YTTREDGKKAVKQLNNYEI 123
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 84 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 143
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 144 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 203
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 204 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 252
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 253 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 84 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 143
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 144 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 203
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 204 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 252
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 253 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 118/212 (55%), Gaps = 4/212 (1%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K S + KGYAFV F KE AS+A+ E+ + + GK+ + ++ + LF+GN+ W
Sbjct: 359 KNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWT 418
Query: 62 EDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FK 118
++ +++ + G GV +I LV +PQ+ +RGFAF+E+ HA A + +++ P F
Sbjct: 419 KEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFG 478
Query: 119 LDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ V++A+P R + +QVK+++V LP +DR++E F +G+I ++V+
Sbjct: 479 HAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARN 538
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+R +GFV F +A+ + + E+
Sbjct: 539 MSTAKRKDFGFVDFTTHEAALSCIDSVNNTEL 570
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 21/166 (12%)
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
H +F+G + R+ E+D++K +IG V+ + L K+ ++N+N+G+AF+++ N A +
Sbjct: 326 HEIFVGGLDRDAEEEDVKKVFERIGE-VVEVRLHKN-LSSNKNKGYAFVKFANKEHASRA 383
Query: 109 RQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+M NP K AP+ L++ N+ T++ +K+ +
Sbjct: 384 LSEMKNPVICGKRCGTAPS--------------EDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 167 G--KITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
G + + + P + SR + F+ F+ + AM A K +K ++
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDV 475
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + L+ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRLMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIRTG-----------RLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV + T+E +A+++LN+ E+ KG+ + + RLF+G +P+N +++
Sbjct: 94 SGSNRGYAFVMYTTREDGKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEE 153
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ V+ + + + +NRGFAF+EY NH A +R+K+ + +L +
Sbjct: 154 ILAEMAKVTEQVVDVIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQI 213
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P ++ + VK LYV+NL T++ + + F G + +V +
Sbjct: 214 MVDWAEPEQDVDEDVMRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------K 265
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + F+HF R A+ A+ + +DG ++ LAKP
Sbjct: 266 KLRDFAFIHFFTREDALNAMNAMDDPLLDGAKIEVVLAKP 305
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ KIG + + L+ D + NRG+AF+ Y + + +
Sbjct: 60 VFVGKIPRDLFEDELVPVFMKIGK-IYELRLMMD--FSGSNRGYAFVMYTTREDGKKAVK 116
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R + L+V +PK+ Q+ E+ A K+T
Sbjct: 117 QLNNYEIR-----------KGRYLGVCPSVDNCRLFVGGIPKNKKQE---EILAEMAKVT 162
Query: 171 K----VVIPPAKPGQERSR-YGFVHFA-ERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + R++AM K + ++ G + A+P+
Sbjct: 163 EQVVDVIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQ 222
Query: 224 D 224
D
Sbjct: 223 D 223
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 131 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
P E + S+ ++V +P+D+ +D L +F GKI ++ + G R Y FV
Sbjct: 46 PPGWEGAQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGSNRG-YAFVM 104
Query: 191 FAERSSAMKALKNTEKYEI 209
+ R KA+K YEI
Sbjct: 105 YTTREDGKKAVKQLNNYEI 123
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 8/219 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ +G+ +GYAFV + + +A +A EEL + E++G++ ++ L +GN+ ++W
Sbjct: 84 MRNPQTGKNRGYAFVRYSSAAMAKRAAEELGTIEIRGRECTAKPSEENDTLHLGNINKSW 143
Query: 61 GEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
++ + + + + I + L++DPQ NRGFAFIE+ H A + +K+ P
Sbjct: 144 KKEMVMETLKSLCIERIEELTLMEDPQVEGLNRGFAFIEFSTHKDALEAFRKLQQPDAIF 203
Query: 120 -DDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
D + V+WA P + SQVK+++V +P + ++E F +G+I ++V+
Sbjct: 204 GADRSAKVAWAQPLYEPDEDTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARN 263
Query: 178 KPGQERSRYGFVHFAERSSAM---KALKNTEKYEIDGQV 213
+R +GFV+F ER +A+ AL NTE IDG +
Sbjct: 264 MLSAKRKDFGFVNFVERDAALACIDALNNTEI--IDGDI 300
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILLEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILLEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 118/212 (55%), Gaps = 4/212 (1%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K S + KGYAFV F KE AS+A+ E+ + + GK+ + ++ + LF+GN+ W
Sbjct: 359 KNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWT 418
Query: 62 EDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FK 118
++ +++ + G GV +I LV +PQ+ +RGFAF+E+ HA A + +++ P F
Sbjct: 419 KEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFG 478
Query: 119 LDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ V++A+P R + +QVK+++V LP +DR++E F +G+I ++V+
Sbjct: 479 HAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARN 538
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+R +GFV F +A+ + + E+
Sbjct: 539 MSTAKRKDFGFVDFTTHEAALSCIDSVNNTEL 570
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 21/166 (12%)
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
H +F+G + R+ E+D++K +IG V+ + L K+ ++N+N+G+AF+++ N A +
Sbjct: 326 HEIFVGGLDRDAEEEDVKKVFERIGE-VVEVRLHKN-LSSNKNKGYAFVKFANKEHASRA 383
Query: 109 RQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+M NP K AP+ L++ N+ T++ +K+ +
Sbjct: 384 LSEMKNPVICGKRCGTAPS--------------EDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 167 GK--ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
G + + + P + SR + F+ F+ + AM A K +K ++
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDV 475
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 31/236 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------ 112
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVT 211
Query: 113 -SNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ + +L + V WA+P + S VK LYV+NL +++ +++ F +
Sbjct: 212 VTPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN----- 266
Query: 171 KVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
KPG ER + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 267 ------IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 316
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 149 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 208
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 209 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 268
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 269 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 315
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 13/226 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV + KE A +A+++LN+ E+ KG+ + + RLF+G +P+N + +
Sbjct: 93 SGSNRGYAFVMYTNKEDAKRAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + ++K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 153 ILEEMSKVTEGVVNVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQI 212
Query: 125 TVSWADPRNAESSAA-SQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P +VK LYV+NL T+D +K+ F +T+V +
Sbjct: 213 AVDWAEPEPEVDEEVMRKVKVLYVRNLMVTTTEDDIKQAFEVGEEETVTRV--------K 264
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ Y FVH+ R A+ A+ ++G L+ + AKP D+ T
Sbjct: 265 KIRDYAFVHYKTREDAIAAMTAMNGSTLEGAKLEVTFAKP-VDRNT 309
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 23/161 (14%)
Query: 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 103
A Q +F+G +PR+ ED++ IG + + L+ D + NRG+AF+ Y N
Sbjct: 52 APQRGCEVFVGKLPRDLYEDELVPVFETIG-KIYEVRLMMD--FSGSNRGYAFVMYTNKE 108
Query: 104 CAEYSRQKMSNPKF---KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
A+ + ++++N + +L P+V N L+V +PK+ + +
Sbjct: 109 DAKRAVKQLNNYEIRKGRLLGVCPSVD-----NCR---------LFVGGIPKNKKKHEIL 154
Query: 161 ELFAH--HGKITKVVIPPAKPGQERSRYGFVHF-AERSSAM 198
E + G + +V P A + + FV + + R++AM
Sbjct: 155 EEMSKVTEGVVNVIVYPSATDKTKNRGFAFVEYESHRAAAM 195
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V LP+D+ +D L +F GKI +V + G R Y FV + + A +A+K
Sbjct: 59 VFVGKLPRDLYEDELVPVFETIGKIYEVRLMMDFSGSNRG-YAFVMYTNKEDAKRAVKQL 117
Query: 205 EKYEI 209
YEI
Sbjct: 118 NNYEI 122
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 118/222 (53%), Gaps = 14/222 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GY FV + ++ A +A+ ELN+ E+ KG+ + + RLF+G +P+N +
Sbjct: 94 SGSNRGYCFVMYTKRDDAKRAVRELNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHE 153
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+R + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 154 IRTEMKKVTEGVVDVIVYPSATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQI 213
Query: 125 TVSWADP-RNAESSAASQVKALYVKNL----PKDITQDRLKELFAHHGKITKVVIPPAKP 179
V WA+P + + S+VK LYV+NL ++ + + G + +V
Sbjct: 214 AVDWAEPEQEVDEDVMSKVKILYVRNLMLTTTEEFLETTFNQACGKEGAVERV------- 266
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
++ Y FVHF ER A+ A++ I+G +++ +LAKP
Sbjct: 267 -KKLRDYAFVHFKERDDALLAMEVINGQLIEGSMVEVTLAKP 307
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDD 124
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KGYAFV F KE A +A+ E+ + + GK+ + ++ LF+GN+ W ++ +++ +
Sbjct: 499 KGYAFVKFANKENAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKL 558
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTV 126
G GV SI LV D Q+ +RGFAF+E+ HA A + +++ P F + V
Sbjct: 559 KDYGIEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKV 618
Query: 127 SWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
++A+P + +QVK++++ LP +D ++ELF +G+I ++V+ +R
Sbjct: 619 AFAEPIHEPDPEIMAQVKSVFINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKD 678
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
YGFV F+ +A+ + K E+
Sbjct: 679 YGFVDFSTHEAAVACVDGVNKSEL 702
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 91/185 (49%), Gaps = 21/185 (11%)
Query: 32 SCELKGKKIKCSAAQAK----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
+ E + ++++ A Q K H +F+G + R+ E+D+RK +IG ++ + L K+ +
Sbjct: 437 ALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGE-IVEVRLHKN-SS 494
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYV 147
N+N+G+AF+++ N A+ + +M NP + ++ + L++
Sbjct: 495 TNKNKGYAFVKFANKENAKKALSEMKNPVIH------------GKRCGTAPSEDNDTLFL 542
Query: 148 KNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNT 204
N+ T++ +K+ +G + + + P + SR + F+ F+ + AM A K
Sbjct: 543 GNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAFKRL 602
Query: 205 EKYEI 209
+K ++
Sbjct: 603 QKPDV 607
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V L +D T++ L+++F G+I +V + + Y FV FA + +A KAL
Sbjct: 460 IFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSEM 519
Query: 205 EKYEIDGQVLDCSLAKPQADQKT 227
+ I G+ C A P D T
Sbjct: 520 KNPVIHGKR--CGTA-PSEDNDT 539
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NR F F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 84 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 143
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 144 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 203
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 204 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 252
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 253 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 166 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 225
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 226 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 285
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 286 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 332
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + L+ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRLMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIRTG-----------RLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 84 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 143
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 144 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 203
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 204 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFN-----------SIKPGAVE 252
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 253 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 11/218 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF+++ TKE A+Q + + + K K + + RLFI +P+ +++
Sbjct: 72 SGHNRGYAFLSYTTKEAANQCVRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEE 131
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ +K+ G+ + + DP ++ RGFAF+EY +H A Y+R+K+ L
Sbjct: 132 IYNKFSKLSDGLTEVIVYPDPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVI 191
Query: 125 TVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V WA+ + ++VK +Y N+ + IT+D L F +G I ++ ++
Sbjct: 192 NVEWAESSKEPKDHVVGNKVKEVYCGNIAEHITEDTLNTAFLQYGSIERI--------KK 243
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
Y F+ FA R SA+KA++ I+G +D LAK
Sbjct: 244 LHDYAFICFASRESALKAIEGVRGTVINGCKVDVQLAK 281
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 200 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 259
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 260 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 319
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 320 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 366
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 77 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREE 136
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 137 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 196
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 197 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 245
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 246 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 288
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + L+ D N N NRG+AF+ + N A+ + +
Sbjct: 43 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRLMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 99
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 100 QLNNYEIRTG-----------RLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 145
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 146 EGVVDVIVYPSAADKTKNRGFAFVEY 171
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 43 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 101
Query: 205 EKYEI 209
YEI
Sbjct: 102 NNYEI 106
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFN-----------SIKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 110/184 (59%), Gaps = 10/184 (5%)
Query: 20 KELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 78
KE A +A++ +S E+ GK + + A +RLF+G++P+N ++++ + +K+ G++
Sbjct: 20 KEAAQEAVKLCDSYEICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVD 79
Query: 79 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESS 137
+ L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP +
Sbjct: 80 VILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 139
Query: 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A
Sbjct: 140 VMAKVKVLFVRNLVTRVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAA 191
Query: 198 MKAL 201
+KA+
Sbjct: 192 VKAM 195
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 12/222 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF + +A +A E LN E++ G +I + RLF G VP+N + +
Sbjct: 80 SGSTRGYAFALYEDPRIAREACERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLE 139
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ +TKI G++ I + + QN + NRGF F+E+ +H A +R+K+ K L D+
Sbjct: 140 FLEELTKILDGIVDIYVYPNAQNRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEI 199
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL D+ Q ++KE+ H + P +
Sbjct: 200 AVDWADPEPGDPVDEDIMETVTALFVRNLSIDMPQQKVKEIIYRHTNV------PILKLK 253
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDCSLAKP 221
+ + + F+H+ R +A + +K + ++ Q + AKP
Sbjct: 254 KINHFAFIHYESREAAQTVMDIMQKPDSIVEQQGWEVRWAKP 295
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 141/329 (42%), Gaps = 94/329 (28%)
Query: 6 SGEAKGYAFVTFRTKELASQAIE------------------------------------- 28
SG +GYAFVTF TKE A QA++
Sbjct: 199 SGLNRGYAFVTFCTKEAAQQAVKLVRLRSLHNKNKCTPLCFFLHSAQPTQQCTVTVDIFL 258
Query: 29 ---------------ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 72
+ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+
Sbjct: 259 IVSKVLSPPLPQFSLQCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV 318
Query: 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132
G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP
Sbjct: 319 TEGLNDVILYLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPL 378
Query: 133 --------------------------------NAESSAASQVKALYVKNLPKDITQDRLK 160
S QVK L+V+NL +T++ L+
Sbjct: 379 EDPDPEVMAKVRVGPRAPIVCVLARIFFFFLPTLSLSGPLQVKVLFVRNLASSVTEELLE 438
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
+ F+ GK+ +V ++ Y F+HF ER A+KAL + +++G+ ++ AK
Sbjct: 439 KAFSQFGKLERV--------KKLKDYAFIHFEERDGAVKALADLNGKDLEGEHIEIVFAK 490
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYG 249
P DQK +++A Y + YG
Sbjct: 491 P-PDQKRKERKAQRQAAKTHMYDEYYYYG 518
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 51/249 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 296
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
A+Q + L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 297 ------------KTAAQARLLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLK 336
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 337 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDD 395
Query: 243 -----PPHL 246
PPH+
Sbjct: 396 YYYYGPPHM 404
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 52/273 (19%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K +GE+KG+ FV F + + I++LN +KGK I+ ++ K +LFIGN+P++
Sbjct: 126 MKDKLTGESKGFGFVLFNDRSMCRNVIDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDL 185
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
++ + G+ SI+ + P N+NRGFAFIEY +H A+ +R+ ++ KL
Sbjct: 186 SKEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLG 245
Query: 121 D--NAPTVSWADPR------NAESSAASQVKALYVKNLP----KDITQDRLKELFAHHGK 168
D TV+W+DP + ++KA+Y++NLP D++ ++
Sbjct: 246 DYITTLTVNWSDPDPTTLDPQNDPLENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENS 305
Query: 169 ITKV--------------VIPPAKPGQE------------------------RSRYGFVH 190
++ + +IP P E + Y FVH
Sbjct: 306 LSILNNNNNNKDDIIEKIIIPQGAPTLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVH 365
Query: 191 FAERSSAMKALKNTEK--YEIDGQVLDCSLAKP 221
R A + L+ E+ I+G+VL S AKP
Sbjct: 366 LKTRELAEEILRIHEEKPININGKVLSLSFAKP 398
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 115/212 (54%), Gaps = 4/212 (1%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K + + KGYAFV F KE A +A+ E+ + + GK+ + ++ LF+GN+ W
Sbjct: 422 KNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWT 481
Query: 62 EDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FK 118
++ +++ + G GV +I LV D Q+ + GFAF+E+ HA A + +++ P F
Sbjct: 482 KEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFG 541
Query: 119 LDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ V++A+P R + +QVK++++ LP +D ++ELF +G++ ++V+
Sbjct: 542 HAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARN 601
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+R YGFV F+ +A+ + K E+
Sbjct: 602 MSSAKRKDYGFVDFSTHEAAVACVDGVNKSEL 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 92/186 (49%), Gaps = 21/186 (11%)
Query: 31 NSCELKGKKIKCSAAQAK----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 86
++ E + ++++ A Q K H +F+G + R+ E+D+RK +IG ++ + L K+
Sbjct: 367 SALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGE-IVEVRLHKN-S 424
Query: 87 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALY 146
+ N+N+G+AF+++ + A+ + +M NP + ++ + L+
Sbjct: 425 STNKNKGYAFVKFSDKEHAKKALSEMKNPVIH------------GKRCGTAPSEDNDTLF 472
Query: 147 VKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+ N+ T++ +K+ +G + +++ P + S + F+ F+ + AM A K
Sbjct: 473 LGNICNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKR 532
Query: 204 TEKYEI 209
+K ++
Sbjct: 533 LQKPDV 538
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V L +D T++ L+++F G+I +V + + Y FV F+++ A KAL
Sbjct: 391 IFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEM 450
Query: 205 EKYEIDGQVLDCSLAKPQADQKT 227
+ I G+ C A P D T
Sbjct: 451 KNPVIHGKR--CGTA-PSEDNDT 470
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 50/273 (18%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+GE +GYAFV + KE A +AI+ L++ +++ GK I + RLF+G++P+ +D+
Sbjct: 112 TGENRGYAFVMYTNKEAAQRAIQMLDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDE 171
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------ 112
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+
Sbjct: 172 VLAEMKKLTDGVVDVIMYPSSTDKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVR 231
Query: 113 --------------------------SNPKFKLDDNAPTVSWADP-RNAESSAASQVKAL 145
+ F+L + V WA P ++ E +V+ L
Sbjct: 232 GSIVFCPSALGFFFFTSMCVSSGRGCTTGTFQLWGQSIQVDWAQPEKDVEEEVMQRVRVL 291
Query: 146 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203
YV+NL + +++ L + F+H G + +V ++ + Y FVH+ R A+ AL
Sbjct: 292 YVRNLMLNTSEETLFKAFSHFKPGSVERV--------KKFTDYAFVHYYCREDALAALDP 343
Query: 204 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
IDG ++ LAKP ++ S GS S
Sbjct: 344 MNGVLIDGAAVEVMLAKPAISKEDSSGSRRHGS 376
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + +NRG+AF+ Y N A+ + Q
Sbjct: 78 VFVGKIPRDMYEDELVPLFERAGK-LYEFRLMM--EFTGENRGYAFVMYTNKEAAQRAIQ 134
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ N K + VS + R L++ ++PK+ T+D E+ A K+
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCR------------LFLGSIPKEKTKD---EVLAEMKKL 179
Query: 170 T----KVVIPPAKPGQERSR-YGFVHFAERSSAMKA 200
T V++ P+ + ++R + FV + +A A
Sbjct: 180 TDGVVDVIMYPSSTDKSKNRGFAFVEYKSHKAAAMA 215
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 126/226 (55%), Gaps = 14/226 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G KG+AF TF + A QAI LN +++ G+++ +++ RLF+ +P+ +++
Sbjct: 147 TGLNKGFAFCTFTKQTSAYQAITTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEE 206
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQ---NRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+ + +K+ + + + + N NRGF F+EY N+ + + ++ K ++
Sbjct: 207 IFQEFSKVTTDLQDVIVYQSCDQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWG 266
Query: 122 NA-PTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V+WA+ R + + S+VK++YV+N+P +++ +LK +F +G+I KV
Sbjct: 267 KVLEAVTWAEAREIPDYAVMSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKV------- 319
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
++ YGFV+FA+R SA++A+ IDG L+ SLA PQ+ +
Sbjct: 320 -RKIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQSSR 364
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 18/204 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALK 202
R + Y FVHF+ R A++A+K
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMK 284
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+ V++ P+ + ++R + FV + + R++AM
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 9/220 (4%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A QA+ EL + + GK+ + +Q LF+GN+ + W ++ +++ +
Sbjct: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D N NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KV 356
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK ++V LP +DR++EL ++G+ITK+ + P +R
Sbjct: 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD 416
Query: 186 YGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKP 221
+GFV F +A+ K++ N E E D + + L++P
Sbjct: 417 FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ DD+RK +++G V + L+ +PQ +N+GFAF+ + A E +RQ
Sbjct: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRF---ATVEQARQ 253
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ K P ++ + + + L++ N+ K T++ LKE H+G
Sbjct: 254 AVTELK------NPVING---KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+ +V G R + F+ F+ RS AM A K +K ++
Sbjct: 305 VEDLTLVEDSNNEGMNRG-FAFLEFSSRSDAMDAFKRLQKRDV 346
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 44/218 (20%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKA 68
+GYAF+TF +KE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + +
Sbjct: 203 RGYAFITFCSKEGAQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEE 262
Query: 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128
+K+ G+ + L P + +NRGF F+EY +H
Sbjct: 263 FSKVTEGLSDVILYHQPDDKKKNRGFCFLEYEDH-------------------------- 296
Query: 129 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 188
A+QVK L+V+NL +T++ L++ F+ GK+ +V ++ Y F
Sbjct: 297 --------KTAAQVKVLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAF 340
Query: 189 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+HF ER A+KAL+ E++G+ ++ AKP DQK
Sbjct: 341 IHFEERDGAVKALEEMNGKELEGEPIEIVFAKP-PDQK 377
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 52/273 (19%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK K +GE+KG+ FV F + + I++LN +KGK I+ ++ K +LFIGN+P++
Sbjct: 126 MKDKLTGESKGFGFVLFNDRSMCRNVIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDL 185
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
++ + G+ SI+ + P N+NRGFAFIEY +H A+ +R+ ++ KL
Sbjct: 186 SKEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLG 245
Query: 121 D--NAPTVSWADPR------NAESSAASQVKALYVKNLPKD---------ITQDRLKE-- 161
D TV+W+DP + ++KA+Y++NLP + I D ++E
Sbjct: 246 DYITTLTVNWSDPDPTTLDPQNDPLENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENS 305
Query: 162 -------LFAHHGKITKVVIPPAKPGQE------------------------RSRYGFVH 190
I K++IP P E + Y FVH
Sbjct: 306 LSLLNNNNNNKDDIIEKIIIPQGAPTLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVH 365
Query: 191 FAERSSAMKALKNTEK--YEIDGQVLDCSLAKP 221
R A + L+ E+ I+G+VL S AKP
Sbjct: 366 LKTRELAEEILRIHEEKPININGKVLSLSFAKP 398
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87
+ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 1 QCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 60
Query: 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 146
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 61 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 120
Query: 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 121 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 167
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 27/237 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
SG +KGY FV F ++ A+ A + N E++GK++ + + +F GN+ + W ++
Sbjct: 55 SGHSKGYGFVRFAKRDYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEF 114
Query: 66 RKAVTKIGPGVISIEL-----VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ + K V+S++L + N NRGF F+ + +HA A + S F L
Sbjct: 115 EELIHKAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLG 174
Query: 121 DNA-PTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
D P ++WAD + + +++K+ ++ NLP+D+ ++ L++LF G++ +V I ++
Sbjct: 175 DILHPAINWADKESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SR 232
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-----------LDCSLAKPQAD 224
GQ FVHFA+RS A++ E+DG+ + S+A+P AD
Sbjct: 233 KGQ--CPVAFVHFAKRSELENAIE-----EMDGKTVRGPGRGPSFKIQVSVARPTAD 282
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V LP+ T+ L+E+F+ G+I I + G + YGFV FA+R A A +
Sbjct: 21 VFVGGLPRSATESTLREIFSSCGEIIDARIMKDQSGHSKG-YGFVRFAKRDYANTAKRQK 79
Query: 205 EKYEIDGQVLDCSLAKPQ 222
E+ G+ L L+ Q
Sbjct: 80 NGIEVQGKRLVVELSMDQ 97
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 27/237 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
SG +KGY FV F ++ A+ A + N E++GK++ + + +F GN+ + W ++
Sbjct: 55 SGHSKGYGFVRFAKRDYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEF 114
Query: 66 RKAVTKIGPGVISIEL-----VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ + K V+S++L + N NRGF F+ + +HA A + S F L
Sbjct: 115 EELIHKAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLG 174
Query: 121 DNA-PTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
D P ++WAD + + +++K+ ++ NLP+D+ ++ L++LF G++ +V I ++
Sbjct: 175 DILHPAINWADKESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SR 232
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-----------LDCSLAKPQAD 224
GQ FVHFA+RS A++ E+DG+ + S+A+P AD
Sbjct: 233 KGQ--CPVAFVHFAKRSELENAIE-----EMDGKTVRGPGRGPSFKIQVSVARPTAD 282
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V LP+ T+ L+E+F+ G+I I + G + YGFV FA+R A A +
Sbjct: 21 VFVGGLPRSATESTLREIFSSCGEIIDARIMKDQSGHSKG-YGFVRFAKRDYANTAKRQK 79
Query: 205 EKYEIDGQVLDCSLAKPQ 222
E+ G+ L L+ Q
Sbjct: 80 NGIEVQGKRLVVELSMDQ 97
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 121/220 (55%), Gaps = 6/220 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M+ +G+ KG+AF+ + + +A +A E+ + E++G++ ++ L +GN+ ++W
Sbjct: 88 MRNPQTGKNKGFAFIRYASAAMAKRATEDFETVEIRGRQCTAKPSEENDTLHLGNINKSW 147
Query: 61 GEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
++ + + + + I + L++DPQ NRGFAFIE+ H A + +K+ P
Sbjct: 148 KKEMVLETLKSLSIESIEELTLMEDPQVEGVNRGFAFIEFSTHKDALDAFRKLQQPDAIF 207
Query: 120 -DDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ + V+WA P + SQVK+++V +P + ++E F +G+I ++V+
Sbjct: 208 GTERSAKVAWAQPLYEPDEDTMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARN 267
Query: 178 KPGQERSRYGFVHFAERSSAM---KALKNTEKYEIDGQVL 214
+R +GFV++ ER++A+ AL NTE + D +VL
Sbjct: 268 MLSAKRKDFGFVNYMERNAALTCIDALNNTEIIDGDMKVL 307
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 142/279 (50%), Gaps = 20/279 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAF+T+ K A +A ++ + E+ GK +K + + A RLFIGN+P++ +++
Sbjct: 329 TGRNRGYAFLTYCDKTAAYEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEE 388
Query: 65 MRKAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + GV + P + +NRGF F+++ +H A +++K+ K + ++
Sbjct: 389 ILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNS 448
Query: 123 APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WA+ + + ++VK LYV+NL + +T+++LKE+F+ +G++ + +
Sbjct: 449 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AK 500
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
+ Y F+HF ER A+KA++ ++ +++ + G + +
Sbjct: 501 KIRDYAFIHFMEREPAIKAMEA-----LNEKMMRGRGRGFGGLRGAFGDFSFGRGIRGGR 555
Query: 242 YPPHLGYGMVGGAYGALGAGYVP-AGFAQPMVYGRGAAP 279
G G GG +GY P AG+ + +YG GA P
Sbjct: 556 GTAGFGRGTFGGPTDFSYSGYDPYAGYEE--LYGYGAPP 592
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+Y+ +PK++ +D L LF GKI + + P R+R Y F+ + ++++A +A K
Sbjct: 294 IYIGKIPKEVYEDTLITLFEDMGKIWDLRL-MMDPLTGRNRGYAFLTYCDKTAAYEAAKK 352
Query: 204 TEKYEI 209
+ YEI
Sbjct: 353 FDGYEI 358
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 15/246 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K + ++KG AF+ F T E A +A++EL S + GKK +A+Q LFIGN+ + W
Sbjct: 242 LKNPQTKKSKGSAFLRFATMEQAKRAVKELKSPMINGKKCGVTASQDNDTLFIGNICKTW 301
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ +R+ + G + I LV+D N N NRG+AF+E+ + + A + +++
Sbjct: 302 TPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMF 361
Query: 120 DDNAP-----TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
P T S+ DP E +QVK +++ L ++R+++L +GK+ KV +
Sbjct: 362 GVEKPAKVSFTDSFLDP---EDEIMAQVKTIFIDGLLPSWNEERVRDLLKRYGKLEKVEL 418
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI----DGQVLDCSLAKPQADQKTSGG 230
P R +GFV F +A+ K E+ D + L++P QK G
Sbjct: 419 ARNMPSARRKDFGFVTFDTHEAAVTCAKFINNSELGEGEDKAKVRARLSRPL--QKAGKG 476
Query: 231 SNSQKS 236
S +S
Sbjct: 477 RQSSRS 482
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G++ + E+D++K +G V I ++K+PQ +++G AF+ + A+ + +
Sbjct: 212 IFVGSLDKGATEEDLKKVFGHVGE-VTEIRILKNPQ-TKKSKGSAFLRFATMEQAKRAVK 269
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--K 168
++ +P + + +A+ L++ N+ K T + L+E H+G
Sbjct: 270 ELKSP------------MINGKKCGVTASQDNDTLFIGNICKTWTPEALREKLKHYGVEN 317
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
+ + + +R Y F+ F+ RS AM A K K ++
Sbjct: 318 MDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV 359
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K + + +GYA V F KE A +A+ E+ + ++GK+ S ++ LF+GN+ W
Sbjct: 451 KNSSTSKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWT 510
Query: 62 EDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FK 118
++ +++ + G GV +I LV D Q+ +RGFAF+E+ HA A + +++ P F
Sbjct: 511 KEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFG 570
Query: 119 LDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ V++A+P R + +QVK++++ LP +D ++E +G+I K+V+
Sbjct: 571 HAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARK 630
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+R +GFV F+ +A+ + K E+
Sbjct: 631 MSTSKRKDHGFVDFSTHEAALACVDGVNKSEL 662
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 24 SQAIEELNSCELKGKKI-KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 82
++ ++E + ++ + I K + +H +F+G + R+ E+D++K +IG V+ + L
Sbjct: 392 TETLDEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGE-VLEVRLH 450
Query: 83 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 142
K+ + ++NRG+A + + N A+ + +M NP + + +S +
Sbjct: 451 KN-SSTSKNRGYAVVRFANKEHAKKALSEMKNPVIR------------GKRCGTSPSEDN 497
Query: 143 KALYVKNLPKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSR-YGFVHFAERSSAMK 199
L++ N+ T++ +K+ +G + + + P + SR + F+ F+ + AM
Sbjct: 498 DTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAML 557
Query: 200 ALKNTEK 206
A K +K
Sbjct: 558 AYKRLQK 564
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 109/192 (56%), Gaps = 11/192 (5%)
Query: 38 KKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ--NANQNRGFA 95
K +K + + A RLFIGN+P++ ++++ + GV + P + +NRGF
Sbjct: 9 KNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFC 68
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDI 154
F+++ +H A +++K+ K + + V WA+ + + ++VK LYV+NL + +
Sbjct: 69 FLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAV 128
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
T+++LKE+F+ HG++ V ++ Y F+HF ER A+KA++ ++G +
Sbjct: 129 TEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALNGTVLEGVPI 180
Query: 215 DCSLAKPQADQK 226
+ SLAKPQ+D+K
Sbjct: 181 EISLAKPQSDKK 192
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 13/202 (6%)
Query: 5 DSGEA-KGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGE 62
D+ E +G+AFVTF T A +AI++LN E++ G+ I + RLFIG +P++ E
Sbjct: 61 DTNETNRGFAFVTFATPADAGKAIQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSE 120
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+++ K +++I GV+ + L + +NRGFAFIEY +H A +R+K + L
Sbjct: 121 EEIHKEMSRITEGVVRVILYSSVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGK 180
Query: 123 APTVSWADPRNAESSAA-SQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKP 179
V WA+P S+V+ LYV+NL + L+ELF A +G + KV I
Sbjct: 181 NVAVDWAEPEPVVEEEILSKVRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKI----- 235
Query: 180 GQERSRYGFVHFAERSSAMKAL 201
+ + F+HF RS A +A+
Sbjct: 236 ---LNDFAFIHFGSRSQAQQAM 254
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ E+++ +GP V I L+ D NRGFAF+ + A A + Q
Sbjct: 29 VFVGKIPRDLMENELLPVFQTVGP-VYEIRLMMDTNET--NRGFAFVTFATPADAGKAIQ 85
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL-KELFAHHGKI 169
K++ + + P R+ ++ L++ +PKD +++ + KE+ +
Sbjct: 86 KLNRYEIR-----PGRFIGVIRSMDNC------RLFIGGIPKDKSEEEIHKEMSRITEGV 134
Query: 170 TKVVIPPAKPGQERSR-YGFVHF-AERSSAM 198
+V++ + ++++R + F+ + + R++A+
Sbjct: 135 VRVILYSSVADKKKNRGFAFIEYESHRAAAL 165
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 113/205 (55%), Gaps = 4/205 (1%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKA 68
+KGYAFV F KE A +++ E+ + + GK+ + ++ LF+GN+ W ++ +R+
Sbjct: 383 SKGYAFVKFANKEHAKRSLSEMKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQK 442
Query: 69 VTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPT 125
+ G GV +I LV D Q+ ++RGFAF+E+ HA A ++ +++ P F +
Sbjct: 443 LKDYGVEGVENITLVADVQHEGRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAK 502
Query: 126 VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
V++A+P R + + VK +++ LP +DR++E +G+I ++V+ +R
Sbjct: 503 VAFAEPIREPDPEVMAHVKTVFLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRK 562
Query: 185 RYGFVHFAERSSAMKALKNTEKYEI 209
+GFV F+ +A+ ++ E+
Sbjct: 563 DFGFVDFSSHEAAIACIERINNAEL 587
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 85/180 (47%), Gaps = 26/180 (14%)
Query: 35 LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 94
+K +KIK ++ +F+G + R E+D+R+ IG V+ + L ++ ++++G+
Sbjct: 334 VKERKIK-----KEYEIFVGGLDREATEEDVRRVFETIGE-VVEVRLHRN-LAMSKSKGY 386
Query: 95 AFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPK 152
AF+++ N A+ S +M NP K AP+ L++ N+
Sbjct: 387 AFVKFANKEHAKRSLSEMKNPVICGKRCGTAPS--------------EDNDTLFLGNICN 432
Query: 153 DITQDRLKELFAHHGK--ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
T++ +++ +G + + + + RSR + F+ F+ + AM A K +K ++
Sbjct: 433 TWTKEAIRQKLKDYGVEGVENITLVADVQHEGRSRGFAFLEFSCHADAMHAYKRLQKPDV 492
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF +F + A +A +L+ E++ G +I + RLF G VP+N +++
Sbjct: 91 SGSTRGYAFASFEDVKTARRACAKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEE 150
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ +TKI G+I I L + NRGF F+E+ +H A +R+K+ + L D+
Sbjct: 151 FMQELTKILEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 210
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL D++Q +++++F + KI P +
Sbjct: 211 AVDWADPEPGDPIDEEIMESVTALFVRNLSLDMSQQKVRDIFQKNTKI------PILKLK 264
Query: 182 ERSRYGFVHFAERSSAMKAL 201
+ + + FVH+ R +A +
Sbjct: 265 KINHFAFVHYESRQAAQTVM 284
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 117/220 (53%), Gaps = 9/220 (4%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W ++ +++ +
Sbjct: 254 KGFAFLRFSTVEQAKKAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 313
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D N NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 314 KHYGVENVEDVTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KV 372
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK ++V LP +DR++EL G+I K+ + P +R
Sbjct: 373 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAKRKD 432
Query: 186 YGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKP 221
+GFV F +A+ K++ N E E D + + L++P
Sbjct: 433 FGFVTFDSHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 472
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ EDD+RK T++G V + L+ +PQ +N+GFAF+ + A+ +
Sbjct: 215 VFVGGLDKDATEDDLRKVFTRVGE-VTEVRLMMNPQT-KKNKGFAFLRFSTVEQAKKAVT 272
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--K 168
++ NP + + + + L++ N+ K T++ LKE H+G
Sbjct: 273 ELKNPVI------------NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEN 320
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
+ V + + +R + F+ F+ RS AM A K +K ++
Sbjct: 321 VEDVTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 362
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF +F + A +A +L+ E++ G +I + RLF G VP+N +++
Sbjct: 97 SGSTRGYAFASFEDVKTARRACAKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ +TKI G+I I L + NRGF F+E+ +H A +R+K+ + L D+
Sbjct: 157 FMQELTKILEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 216
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL D++Q +++++F + KI P +
Sbjct: 217 AVDWADPEPGDPIDEEIMESVTALFVRNLNLDMSQQKVRDIFQKNTKI------PILKLK 270
Query: 182 ERSRYGFVHFAERSSAMKAL 201
+ + + FVH+ R +A +
Sbjct: 271 KINHFAFVHYENRQAAQTVM 290
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 6/202 (2%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GY F + +E +A+ EL+S E++ GK + + RLF+G +P+N +D+
Sbjct: 78 SGCNRGYGFCIYTNREDTRRAVAELDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDE 137
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV + + + +NRGFAF+EY NH A +R+K+ + L +
Sbjct: 138 IMAEMLKVTDGVKDVIVYPSVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQI 197
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P R + S+V+ LYV+NL T++ L++ H + V + + R
Sbjct: 198 AVDWAEPEREVDEDIMSKVRILYVRNLMLHTTEEALRD---HCNRAIGAVDAVERVKKIR 254
Query: 184 SRYGFVHFAERSSAMKALKNTE 205
Y FVHF +R A AL+ +
Sbjct: 255 D-YAFVHFRDRLQATAALRQLD 275
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
RLFIG +P+ +++ + + K+ GV+ + + + +NRGFAF+EY +H A +R
Sbjct: 107 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 166
Query: 110 QKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH-- 166
+K+ + +L + V WA+P + + VK LYV+NL + T+D +K+ F
Sbjct: 167 RKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNP 226
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +V ++ Y FVHFA R A+ A+ N E++G L+ +LAKP ++
Sbjct: 227 GCVERV--------KKIRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQ 278
Query: 227 TS 228
S
Sbjct: 279 YS 280
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 106/197 (53%), Gaps = 43/197 (21%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDH---------------------- 299
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
+A+QVK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 300 ------------KSAAQVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLK 339
Query: 185 RYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 340 DYAFVHFEDRGAAVKAM 356
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 12/222 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF F +A A E L+ E++ G +I + RLF G VP+ + +
Sbjct: 91 SGSTRGYAFALFEDSRVARIACERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPE 150
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ +TKI G+ I + Q+ N NRGF F+E+ +H A +R+K+ K L D+
Sbjct: 151 FMEELTKILDGITDIYVYPSAQDRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEI 210
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL D++Q +++E+ + + P +
Sbjct: 211 AVDWADPEPGDPIDEDIMETVTALFVRNLALDMSQQKVREILYRYTNV------PILKLK 264
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDCSLAKP 221
+ + + FVH+ R +A + E+ + ++ Q + AKP
Sbjct: 265 KINHFAFVHYENREAAKTVMNIMERPDSIVEKQGWEIRWAKP 306
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 17/245 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAFV + + A+ A+++LN E++ ++ I + RLF+GN+P+ ++D
Sbjct: 8 SGSNRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNIPKTKTKED 67
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+R+ ++K ++ + L K+ + NRGFAF+E+ H A +R+ + +L D
Sbjct: 68 VREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGCVRLWDQEV 127
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQ 181
V WA+P + + +VK LYV+N T D ++++F + K+ +V +
Sbjct: 128 MVDWAEPEPDIDDEQMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERV--------K 179
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD-----QKTSGGSNSQKS 236
+ Y F+HF ER A A+ + +IDG ++ AKP QK S G+ +
Sbjct: 180 KIYDYAFIHFYEREHAELAIAKLQNADIDGSNIEIRWAKPVDRDLYRIQKLSRGNAKFNN 239
Query: 237 ALNPT 241
+L+ T
Sbjct: 240 SLDLT 244
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 110/197 (55%), Gaps = 4/197 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KGYAFV F +KE +A+ E+ + ++GK+ + ++ LF+GN+ W ++ +R+ +
Sbjct: 62 KGYAFVKFASKEHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKL 121
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTV 126
G GV +I +V D Q+ ++RGFAF+E+ HA A + +++ P F + V
Sbjct: 122 KDYGVEGVENITVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKV 181
Query: 127 SWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
++A+P R + +QVK +++ LP +DR++E +G+I +VV+ +R
Sbjct: 182 AFAEPIREPDPEIMAQVKTIFLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKD 241
Query: 186 YGFVHFAERSSAMKALK 202
+GFV F+ A+ ++
Sbjct: 242 FGFVDFSTHDDAVACIE 258
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
K +KIK ++ +F+G + R+ E+D+RK KIG V+ + L K+ + N+N+G+A
Sbjct: 13 KERKIK-----KEYEIFVGGLDRDATEEDLRKVFEKIGE-VVEVRLHKN-LSTNRNKGYA 65
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 155
F+++ + + + +M NP + + ++ + L++ N+ T
Sbjct: 66 FVKFASKEHVKRALSEMKNPVIR------------GKRCGTAPSEDNDTLFLGNICNTWT 113
Query: 156 QDRLKELFAHHGK--ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
++ +++ +G + + + + RSR + F+ FA + AM A K +K ++
Sbjct: 114 KEAIRQKLKDYGVEGVENITVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQKPDV 170
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W ++ +++ +
Sbjct: 273 KGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 332
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D N NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 333 KHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTA-KV 391
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK +++ LP +DR++EL +G+I K+ + P +R
Sbjct: 392 SFADSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKD 451
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
+GFV F +A+ K+ E+
Sbjct: 452 FGFVTFDTHDAAVTCAKSINNAEL 475
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ EDD+RK +++G V + L+ +PQ +N+GFAF+ + A+ +
Sbjct: 234 VFVGGLDKDATEDDLRKVFSQVGE-VTEVRLMMNPQT-KKNKGFAFLRFATVEQAKRAVT 291
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ NP + + + + L++ N+ K T++ LKE H+G
Sbjct: 292 ELKNP------------VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEN 339
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+ +V G R + F+ F+ RS AM A K +K ++
Sbjct: 340 VEDLTLVEDSNNEGMNRG-FAFLEFSSRSDAMDAFKRLQKRDV 381
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 9/243 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K + ++KG AF+ F T E A +A++EL S + GKK +A+Q LF+GN+ + W
Sbjct: 246 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIW 305
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ +R+ + G + I LV+D N N NRG+AF+E+ + + A + +++
Sbjct: 306 TPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMF 365
Query: 120 DDNAPT-VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
P VS+ D + E +QVK +++ L ++R+++L +GK+ KV +
Sbjct: 366 GVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARN 425
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI----DGQVLDCSLAKPQADQKTSGGSNS 233
P R +GFV F +A+ K E+ D + L++P QK G S
Sbjct: 426 MPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPL--QKAGKGRQS 483
Query: 234 QKS 236
+S
Sbjct: 484 SRS 486
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G++ + E+D++K +G V + ++K+PQ +++G AF+ + A+ + +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGE-VTEVRILKNPQ-TKKSKGSAFLRFATVEQAKRAVK 273
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--K 168
++ +P + + +A+ L+V N+ K T + L+E H+G
Sbjct: 274 ELKSP------------MINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVEN 321
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
+ + + +R Y F+ F+ RS AM A K K ++
Sbjct: 322 MDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV 363
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 9/243 (3%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K + ++KG AF+ F T E A +A++EL S + GKK +A+Q LF+GN+ + W
Sbjct: 246 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIW 305
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ +R+ + G + I LV+D N N NRG+AF+E+ + + A + +++
Sbjct: 306 TPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMF 365
Query: 120 DDNAPT-VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
P VS+ D + E +QVK +++ L ++R+++L +GK+ KV +
Sbjct: 366 GVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARN 425
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI----DGQVLDCSLAKPQADQKTSGGSNS 233
P R +GFV F +A+ K E+ D + L++P QK G S
Sbjct: 426 MPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPL--QKAGKGRQS 483
Query: 234 QKS 236
+S
Sbjct: 484 SRS 486
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G++ + E+D++K +G V + ++K+PQ +++G AF+ + A+ + +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGE-VTEVRILKNPQ-TKKSKGSAFLRFATVEQAKRAVK 273
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--K 168
++ +P + + +A+ L+V N+ K T + L+E H+G
Sbjct: 274 ELKSP------------MINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVEN 321
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
+ + + +R Y F+ F+ RS AM A K K ++
Sbjct: 322 MDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV 363
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 19/225 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEE---LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWG 61
SG +GY F +++ E A +A E LN+ E++ G++I + RLFIG +PR
Sbjct: 98 SGVNRGYCFAVYQSLEGAKRACIESLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIK 157
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
D + + K G + + + ++NRGFAF+EY +H A Y+R+K L
Sbjct: 158 ADQIIAEIRKHTEGAEELVVYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWG 217
Query: 122 NAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+ WA+P + +S VK LYV+NL + + L++ F G I +
Sbjct: 218 KTVCIDWAEPEQQVDSDIMENVKILYVRNLMLNTDEITLRKYF-EMGDIHCI-------- 268
Query: 181 QERSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
ER + + FVHF R A+ AL ++DG ++ LAKP
Sbjct: 269 -ERVKKIRDFAFVHFTTREKALNALNKLNHTKLDGSTIEVCLAKP 312
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 9/206 (4%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W ++ +++ +
Sbjct: 72 KGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 131
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEY--YNHACAEYSRQKMSNPKFKLDDNAP-- 124
G V + LV+D N NRGFAF+E+ + A + R + F +D A
Sbjct: 132 KHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVDRTAKVS 191
Query: 125 -TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
T S+ DP + +QVK +++ LP +DR++EL +G+I K+ + P +R
Sbjct: 192 FTDSFIDPGD---EIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKR 248
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEI 209
+GFV F +A+ K+ E+
Sbjct: 249 KDFGFVTFDTHDAAVTCAKSINNAEL 274
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 19/160 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ EDD++K +++G V + L+ +PQ +N+GFAF+ + A+ +
Sbjct: 33 VFVGGLDKDATEDDLKKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQAKRAVT 90
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ NP + + + + L++ N+ K T++ LKE H+G
Sbjct: 91 ELKNP------------VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEN 138
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206
+ +V G R + F+ F+ RS AM A K ++
Sbjct: 139 VEDLTLVEDSNNEGMNRG-FAFLEFSFRSDAMDAFKRLQE 177
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 9/156 (5%)
Query: 72 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131
+ G++ + + P + +NRGF F+EY +H A +++++ + K+ V WADP
Sbjct: 10 LTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADP 69
Query: 132 RNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
+ + S+VK LYV+NL ++IT++ LKE F +G + +V ++ Y FVH
Sbjct: 70 QEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERV--------KKIKDYAFVH 121
Query: 191 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
F +R A+KA++ + E+ G L+ SLAKP +D+K
Sbjct: 122 FEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKK 157
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 157/329 (47%), Gaps = 39/329 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFTNRQDARDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILVEMRKVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL ++ +++ F++ KPG++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSN-----------VKPGKKH 260
Query: 184 -SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALN 239
Y + K + IDG ++ +LAKP ++ + + G+ + +A+
Sbjct: 261 LCLYCTSIILNLHTIKKMITILCLQIIDGSPIEVTLAKPVDKESYVRYTRGTGGRGAAIQ 320
Query: 240 PTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPML-LPDGRIGYVL 298
Y +G+ + LGA P+ Y A P A +P + P + GYV
Sbjct: 321 GEYAYTIGH-VYDPTTAYLGA---------PVFY---APPAYTAAIPSIQFPPAK-GYVS 366
Query: 299 QQPGVQQHNPPPQPRSGRGGAGSSSSGGR 327
+ V +P S RG AG GGR
Sbjct: 367 NRSLV-------RPPSVRGAAGVRGLGGR 388
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ K G V + ++ D N N NRG+AF+ + N A + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTGK-VYEMRMMMD-FNGN-NRGYAFVTFTNRQDARDAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK R +E+ K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK---TKRREEILVEMRKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAM 198
V++ P+ + ++R + FV + + R++AM
Sbjct: 161 DGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAM 194
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GK+ ++ + G R Y FV F R A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFNGNNRG-YAFVTFTNRQDARDAIKQL 116
Query: 205 EKYEI-DGQVL 214
YEI +G++L
Sbjct: 117 NNYEIRNGRLL 127
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF + +A +A L+ E++ G +I + RLF G VP++ +++
Sbjct: 20 SGSTRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSMDNCRLFFGGVPKSKTKEE 79
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+TKI G+I + L + NRGF F+E+ +H A +R+K+ K L D+
Sbjct: 80 FLSELTKILDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEI 139
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL +++Q +++E+F H + P +
Sbjct: 140 AVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVFHRHTNV------PILKLK 193
Query: 182 ERSRYGFVHFAERSSAMKALKNTEK 206
+ + + F+H+ R +A + +K
Sbjct: 194 KINHFAFIHYENRGAAQAVMDIMQK 218
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF F ++A A +L+ E++ G +I + RLF G VP+N +++
Sbjct: 93 SGSTRGYAFALFENSKIARSACAKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEE 152
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + KI G+I I L + NRGF F+E+ +H A +R+K+ + L D+
Sbjct: 153 FMQELNKILEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 212
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL ++ Q +++++F + KI P +
Sbjct: 213 AVDWADPEPGDPIDEEVMENVTALFVRNLSLNMPQQKIRDIFQKNTKI------PILKLK 266
Query: 182 ERSRYGFVHFAERSSAMKAL 201
+ + + FVH+ R +A +
Sbjct: 267 KINHFAFVHYENRKAAQNVM 286
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF F ++A A +L+ E++ G +I + RLF G VP+N +++
Sbjct: 82 SGSTRGYAFALFENSKIARSACAKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEE 141
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + KI G+I I L + NRGF F+E+ +H A +R+K+ + L D+
Sbjct: 142 FMQELNKILEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 201
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL ++ Q +++++F + KI P +
Sbjct: 202 AVDWADPEPGDPIDEEVMENVTALFVRNLSLNMPQQKIRDIFQKNTKI------PILKLK 255
Query: 182 ERSRYGFVHFAERSSAMKAL 201
+ + + FVH+ R +A +
Sbjct: 256 KINHFAFVHYENRKAAQSVM 275
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 120/216 (55%), Gaps = 5/216 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K + + +G FV F TK+ A +A+ E+ + + GK+ +A++ LFIGN+ W
Sbjct: 184 LKDSCTNKNRGCGFVRFATKDQAKKALSEMKNPVISGKRCGTAASEDNDTLFIGNICNTW 243
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--F 117
++ + K + + GV +I LV+DP++ +RGF FI++ H A ++ +++ P F
Sbjct: 244 TKEAINKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAFKRLQKPDVIF 303
Query: 118 KLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
+ V++++P + + ++VK++++ LP +DR+++ F +G+I +V +
Sbjct: 304 GHAERTVKVAFSEPLQEPDPEIMAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIKRVTLAR 363
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDG 211
P +R +GFV F +A+ +++ K + +DG
Sbjct: 364 NMPAAKRKDFGFVDFMTHEAAIACIEDVNKKDLVDG 399
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
K +KIK +H +FIG + E+D++ A K+G V+ + L+KD N+NRG
Sbjct: 144 KERKIK-----KEHEIFIGGLDCEVVEEDLKMAFEKVGE-VVEVRLLKD-SCTNKNRGCG 196
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL----P 151
F+ + A+ + +M N P +S + ++A+ L++ N+
Sbjct: 197 FVRFATKDQAKKALSEMKN---------PVISG---KRCGTAASEDNDTLFIGNICNTWT 244
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
K+ +LKE + +V P G R + F+ FA AM A K +K ++
Sbjct: 245 KEAINKKLKEYNLEGVENITLVQDPRHEGLSRG-FCFIQFACHDDAMFAFKRLQKPDV 301
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGK-KIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G +GY F+++ T+E A A+ N+ +++ K KI S + RLFIGN+PR+ ++
Sbjct: 82 GRTRGYGFISYFTQEDAHAAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEI 141
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K G++ I +P N + NRGF F+E+ +H A +R+++S +
Sbjct: 142 QSVLEKYVEGIVDIIFYHEPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIF 201
Query: 126 VSWADPRNAES-SAASQVKALYVKNLPKDITQDRLKELF------AHHGKITKVVIPPAK 178
V WA+P + QV LY+ NLP ++ + LK +H K+ K+
Sbjct: 202 VDWAEPLPVVNPQILKQVTKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKI------ 255
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + FVHF R A +A + + +++ A+P
Sbjct: 256 -----NNFAFVHFTLRKYAEEAFRKLTGLVMMDKLIGVEWARP 293
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIGN+P + ED++ ++ GP + ++ L+ D + RG+ FI Y+ A +
Sbjct: 47 IFIGNLPPDLYEDELIPLFSQKGP-IYNLRLMMD--FFGRTRGYGFISYFTQEDAHAAVA 103
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+N K + + S + + L++ N+P+ +T ++ + + +
Sbjct: 104 AFNNYKIR-----------NKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGI 152
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
+I +P + GF+ S + A+
Sbjct: 153 VDIIFYHEPYNDSINRGFIFVEFESHRLAAI 183
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 17/217 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G +KG+ FV F +E A A + N EL+GK++ + + LF GN+ + W ++
Sbjct: 106 NGVSKGFGFVRFAERECAYTAKRQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEF 165
Query: 66 RKAVTKIGPGVISIELVK----DPQNANQ--NRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + K VIS++L D + + NRGFAF+ + +H A + S F L
Sbjct: 166 EELIHKTFKDVISVDLATASNLDSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLL 225
Query: 120 DDNA-PTVSWAD-PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
P ++WA+ N ++ +++K +V NLP ++ +D LK+LF G++ +V + +
Sbjct: 226 GGVLHPAINWAERESNVDAGEMAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAV--S 283
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G+ GF+HF RS A+K E+DG+ +
Sbjct: 284 RKGE--YPVGFIHFGSRSELDNAIK-----EMDGKTV 313
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 138 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 195
AA +VK ++V LP+ T+ L+E+F+ G+I + I + G + +GFV FAER
Sbjct: 63 AAGRVKGTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQNGVSKG-FGFVRFAERE 121
Query: 196 SAMKALKNTEKYEIDGQVLDCSLAKPQ 222
A A + E+ G+ L L+ Q
Sbjct: 122 CAYTAKRQKNGIELQGKRLAVDLSLDQ 148
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/74 (59%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 200
QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +GFVHFAERSSA+KA
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFAERSSALKA 64
Query: 201 LKNTEKYEIDGQVL 214
+K +EKYE +G V
Sbjct: 65 VKGSEKYEFNGNVF 78
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 118/227 (51%), Gaps = 6/227 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M +G+ KGYAF+ F A +A+ + E+ GK+ + + +F+GN+ +NW
Sbjct: 363 MMNSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNW 422
Query: 61 GEDDMRKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+D+ K + +IG I + ++ DP N +NRGFAF+E + A+ + +K+
Sbjct: 423 KNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFG 482
Query: 120 DDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V+WA+P N + +VK +Y + +P ++++++ F G+I VV+
Sbjct: 483 KHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNL 542
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEK---YEIDGQV-LDCSLAKP 221
+R + FV + R +A++ +++ + ++ + +V + SLAKP
Sbjct: 543 RSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 589
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 35/215 (16%)
Query: 19 TKELA----SQAI--EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 72
TKE+A S A+ EE+ + E + ++ K +FIG + ++ E+D+RK ++
Sbjct: 303 TKEVAEVEDSMAVLSEEMEALERQKRR--------KTEIFIGGLDKSAREEDIRKVFEEV 354
Query: 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADP 131
G V+ + L+ + + +N+G+AF+ + A A +++ ++ PK ++
Sbjct: 355 G-EVLEVRLMMNSKTG-KNKGYAFLRF---ALASDAKRALAKYPKIEICG---------- 399
Query: 132 RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSR-YGF 188
+ ++ +++ N+ K+ + + +L G KI KV + ER+R + F
Sbjct: 400 KQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAF 459
Query: 189 VHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKP 221
+ A A K +K ++ G Q + + A+P
Sbjct: 460 LELETNKDAQLAYKKLQKKDVFGKHQNIKVAWAEP 494
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 119/216 (55%), Gaps = 5/216 (2%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
+K + + +G FV F TK+ A +A+ E+ + + GK+ +A++ LFIGN+ W
Sbjct: 184 LKDSCTNKNRGCGFVRFATKDQAKKALSEMKNPVISGKRCGTAASEDNDTLFIGNICNTW 243
Query: 61 GEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--F 117
++ + K + + GV +I LV+DP++ +RGF FI++ H A ++ +++ P F
Sbjct: 244 TKEAITKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAFKRLQKPDVIF 303
Query: 118 KLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
+ V++++P + + ++VK++++ LP +DR+++ F +G+I +V +
Sbjct: 304 GHAERTVKVAFSEPLQEPDPEIMAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIERVTLAR 363
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDG 211
P +R +GFV F +A+ + + K + +DG
Sbjct: 364 NMPAAKRKDFGFVDFLTHEAAIACIDDINKKDLVDG 399
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
K +KIK +H +FIG + E+D++ A K+G V+ + L+KD N+NRG
Sbjct: 144 KERKIK-----KEHEIFIGGLDCEVVEEDLKMAFEKVGE-VVEVRLLKD-SCTNKNRGCG 196
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 155
F+ + A+ + +M N P +S + ++A+ L++ N+ T
Sbjct: 197 FVRFATKDQAKKALSEMKN---------PVISG---KRCGTAASEDNDTLFIGNICNTWT 244
Query: 156 QD----RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
++ +LKE + +V P G R + F+ FA AM A K +K ++
Sbjct: 245 KEAITKKLKEYNLEGVENITLVQDPRHEGLSRG-FCFIQFACHDDAMFAFKRLQKPDV 301
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 10/200 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF F + A A +L+ E++ G +I + RLF G VP+N +++
Sbjct: 97 SGSTRGYAFALFEDSKTARNACAKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ KI G+ I L + + NRGF F+E+ +H A +R+K+ + L D+
Sbjct: 157 FMTELNKILEGITDIYLYPSAHDKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 216
Query: 125 TVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP + V AL+V+NL D+ Q +++E+F KI P +
Sbjct: 217 AVDWADPEPGDPIDEDVMENVTALFVRNLSLDVQQQKIREIFQKSTKI------PILKLK 270
Query: 182 ERSRYGFVHFAERSSAMKAL 201
+ + + F+H+ R +A +
Sbjct: 271 KINHFAFIHYESRQAAQAVM 290
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 9/220 (4%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W ++ +++ +
Sbjct: 73 KGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 132
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D N NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 133 KHYGVENVEDLTLVEDSNNLGMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVDRPAK-V 191
Query: 127 SWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD +QVK L++ LP +DR + L +G I K+ + P R
Sbjct: 192 SFADSFIGPGDEIMAQVKTLFIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSARRKD 251
Query: 186 YGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKP 221
+GFV F +A+ K++ N E E D +V + L++P
Sbjct: 252 FGFVTFDTHDAAVACAKSINNVELGEGDNKVKVRARLSRP 291
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ EDD+RK +++G V L+ +PQ +N+GFAF+ + A+ +
Sbjct: 34 IFVGGLDKDATEDDLRKVFSRVGE-VTEARLMMNPQ-TKKNKGFAFLRFATVEQAKRAVT 91
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ NP + + + + L++ N+ K T++ LKE H+G
Sbjct: 92 ELKNPVI------------NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEN 139
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+ +V G R + F+ F+ RS AM A K +K ++
Sbjct: 140 VEDLTLVEDSNNLGMNRG-FAFLEFSSRSDAMNAFKRLQKRDV 181
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 2 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN 61
Query: 123 APTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V +
Sbjct: 62 VGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------K 113
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 241
+ Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N
Sbjct: 114 KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQM 172
Query: 242 Y-------PPHL 246
Y PPH+
Sbjct: 173 YDDYYYYGPPHM 184
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 117/222 (52%), Gaps = 6/222 (2%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ KGYAF+ F A +A+ + E+ GK+ + + +F+GN+ +NW +D+
Sbjct: 5 TGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDV 64
Query: 66 RKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
K + +IG I + ++ DP N +NRGFAF+E + A+ + +K+
Sbjct: 65 VKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNI 124
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V+WA+P N + +VK +Y + +P ++++++ F G+I VV+ +R
Sbjct: 125 KVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKR 184
Query: 184 SRYGFVHFAERSSAMKALKNTEK---YEIDGQV-LDCSLAKP 221
+ FV + R +A++ +++ + ++ + +V + SLAKP
Sbjct: 185 KDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W ++ +++ +
Sbjct: 73 KGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 132
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D NA NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 133 KHYGVENVKDLTLVEDSNNAGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KV 191
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK +++ LP +DR++ L +G+I K+ + P R
Sbjct: 192 SFADSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSARRKD 251
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
+GFV F +A+ K+ E+
Sbjct: 252 FGFVTFDTHDAAVTCAKSINNAEL 275
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ EDD+RK +++G V + L+ +PQ +N+GFAF+ + A+ +
Sbjct: 34 VFVGGLDKDATEDDLRKIFSRVGE-VTEVRLMMNPQT-KKNKGFAFLRFATVEQAKRAVT 91
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--- 167
++ NP + + + + L++ N+ K T++ LKE H+G
Sbjct: 92 ELKNPVI------------NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEN 139
Query: 168 -KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
K +V G R + F+ F+ RS AM A K +K ++
Sbjct: 140 VKDLTLVEDSNNAGMNRG-FAFLEFSSRSDAMDAFKRLQKRDV 181
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG +GYAF + T +A +A L+ E++ G +I + RLF G VP+N + +
Sbjct: 90 SGSTRGYAFALYETPRIAREACRRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPE 149
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+TK+ + I L + + NRGF F+E+ +H A +R+K+ K L D+
Sbjct: 150 FMAELTKMLDDITDIYLYPSAHDRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEI 209
Query: 125 TVSWADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V WADP E +V L+V+NL DI+Q ++ +F H + P +
Sbjct: 210 AVDWADPEPGEPIDEDIMERVTTLFVRNLALDISQQNVRGIFHRHTNV------PILKLK 263
Query: 182 ERSRYGFVHFAERSSAMKALKNTEK 206
+ + + F+H+ R +A + +K
Sbjct: 264 KINHFAFIHYENRQAAQIVMDIMQK 288
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGK-KIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G +GY F+++ T+E A A+ N+ +++ K KI S + RLFIGN+PR+ ++
Sbjct: 443 GRTRGYGFISYFTQEDAHAAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEI 502
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K G++ I +P N + NRGF F+E+ +H A +R+++S +
Sbjct: 503 QSVLEKYVEGIVDIIFYHEPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIF 562
Query: 126 VSWADPRNAES-SAASQVKALYVKNLPKDITQDRLKELF------AHHGKITKVVIPPAK 178
V WA+P + QV LY+ NLP ++ + LK +H K+ K+
Sbjct: 563 VDWAEPLPVVNPQILKQVTKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKI------ 616
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + FVHF R A +A + + +++ A+P
Sbjct: 617 -----NNFAFVHFTLRKYAEEAFRKLTGLVMMDKLIGVEWARP 654
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 16/251 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELN----SCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
+G +G+AFVT+ A +A+ + N + + ++ + RLF GNVP++
Sbjct: 67 TGNTRGFAFVTYYNVWDAQKAVLKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKT 126
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK-MSNPKFKLD 120
DD+ + K G++ + + + NRGFAF+E+ +HA A +R+K +++ +
Sbjct: 127 RDDIENELKKFIDGIVKVITYPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPW 186
Query: 121 DNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V WA+P + +QVK LY+KN+P T DRLK + + ++ I +
Sbjct: 187 GRKLYVDWAEPEPMVDPDVMTQVKVLYMKNVPTFWTLDRLKTYIS--KTVGEIFI---ER 241
Query: 180 GQERSRYGFVHFAERSSAMKALK----NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 235
+R Y F+HF ERS A +ALK ++ +G+ ++ A+P K N
Sbjct: 242 IYKRDNYAFIHFDERSFAERALKIFDSVSQYLSFNGKQIEVEWARPSCYSK-KNRINEVP 300
Query: 236 SALNPTYPPHL 246
+ PP L
Sbjct: 301 DNFCTSVPPRL 311
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 17/154 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+GN+PR+ ED++ +++ P + L+ D RGFAF+ YYN A+ +
Sbjct: 33 IFVGNIPRDLFEDELIPLFSQVAP-IYKFRLMMD--FTGNTRGFAFVTYYNVWDAQKAVL 89
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLK-ELFAHHG 167
K + K+ + N R ++ + + L+ N+PKD T+D ++ EL
Sbjct: 90 KFN--KYCIASNT--------RKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFID 139
Query: 168 KITKVVIPPAKPGQERSR-YGFVHFAERSSAMKA 200
I KV+ P + +R + FV F + A A
Sbjct: 140 GIVKVITYPERNAHHFNRGFAFVEFQSHAIAAIA 173
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 127/249 (51%), Gaps = 17/249 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF ++ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFTNRQDARDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILVEMRKVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V WA+P + S VK LYV+NL ++ +++ F++ KPG++
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSN-----------VKPGKKH 260
Query: 184 -SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALN 239
Y + K + IDG ++ +LAKP ++ + + G+ + +A+
Sbjct: 261 LCLYCTSIILNLHTIKKMITILCLQIIDGSPIEVTLAKPVDKESYVRYTRGTGGRGAAIQ 320
Query: 240 PTYPPHLGY 248
Y +G+
Sbjct: 321 GEYAYTIGH 329
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 23/154 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ K G V + ++ D N N NRG+AF+ + N A + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTGK-VYEMRMMMD-FNGN-NRGYAFVTFTNRQDARDAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK R +E+ K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK---TKRREEILVEMRKVT 160
Query: 171 ----KVVIPPAKPGQERSR-YGFVHF-AERSSAM 198
V++ P+ + ++R + FV + + R++AM
Sbjct: 161 DGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAM 194
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GK+ ++ + G R Y FV F R A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFNGNNRG-YAFVTFTNRQDARDAIKQL 116
Query: 205 EKYEI-DGQVL 214
YEI +G++L
Sbjct: 117 NNYEIRNGRLL 127
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 107/201 (53%), Gaps = 10/201 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GY F + + QA+++LN E+ KGK + + RLFIG +P++ +D+
Sbjct: 101 NGLNRGYGFCLYTNRNDTKQAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDE 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ ++K+ GV + + + +NRGFAF+EY NH A +R+K+ + L +
Sbjct: 161 IMLEMSKVTDGVKDVIVYPSLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQI 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P R + + S+V+ LYV+NL T++ +K+ F A H + + +
Sbjct: 221 AVDWAEPERQVDENIMSKVRILYVRNLMLHTTENAVKDHFNQAIHS------MDAVERVK 274
Query: 182 ERSRYGFVHFAERSSAMKALK 202
+ Y FVHF R A+ ALK
Sbjct: 275 KIRDYAFVHFHNRIDAITALK 295
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 16/254 (6%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W +D +++ +
Sbjct: 271 KGFAFLRFATVEEAKRAVSELKNPVINGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKL 330
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D N NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 331 KHYGVDNVEDLTLVEDSNNEGSNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPA-KV 389
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK ++V +LP ++ ++ L +G+I K+ + P +R
Sbjct: 390 SFADSFIDPGDEIMAQVKTVFVDSLPASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKD 449
Query: 186 YGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPT 241
+GFV F +A+ K++ N+E E D + + L++P Q+ G K A
Sbjct: 450 FGFVTFDTHDAAVSCAKSINNSELGEGDNKAKVRARLSRPL--QRGKG-----KHASRTD 502
Query: 242 YPPHLGYGMVGGAY 255
Y P G V G++
Sbjct: 503 YWPGRTTGRVRGSW 516
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E+D++K + +G V + L+ +PQ +N+GFAF+ +
Sbjct: 221 VKERRKRKEFEVFVGGLDKDVKEEDLKKVFSAVGE-VTEVRLMMNPQT-KKNKGFAFLRF 278
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
A+ + ++ NP + + + + L++ N+ K +D L
Sbjct: 279 ATVEEAKRAVSELKNPVI------------NGKQCGVTPSQDSDTLFLGNICKTWKKDAL 326
Query: 160 KELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
KE H+G + +V G R + F+ F+ RS AM A K +K ++
Sbjct: 327 KEKLKHYGVDNVEDLTLVEDSNNEGSNRG-FAFLEFSSRSDAMDAFKRLQKRDV 379
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 16/254 (6%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q LF+GN+ + W +D +++ +
Sbjct: 271 KGFAFLRFATVEEAKRAVSELKNPVINGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKL 330
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D N NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 331 KHYGVDNVEDLTLVEDSNNEGSNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPA-KV 389
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK ++V +LP ++ ++ L +G+I K+ + P +R
Sbjct: 390 SFADSFIDPGDEIMAQVKTVFVDSLPASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKD 449
Query: 186 YGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPT 241
+GFV F +A+ K++ N+E E D + + L++P Q+ G K A
Sbjct: 450 FGFVTFDTHDAAVSCAKSINNSELGEGDNKAKVRARLSRPL--QRGKG-----KHASRTD 502
Query: 242 YPPHLGYGMVGGAY 255
Y P G V G++
Sbjct: 503 YWPGRTTGRVRGSW 516
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E+D++K + +G V + L+ +PQ +N+GFAF+ +
Sbjct: 221 VKERRKRKEFEVFVGGLDKDVKEEDLKKVFSAVGE-VTEVRLMMNPQT-KKNKGFAFLRF 278
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
A+ + ++ NP + + + + L++ N+ K +D L
Sbjct: 279 ATVEEAKRAVSELKNPVI------------NGKQCGVTPSQDSDTLFLGNICKTWKKDAL 326
Query: 160 KELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
KE H+G + +V G R + F+ F+ RS AM A K +K ++
Sbjct: 327 KEKLKHYGVDNVEDLTLVEDSNNEGSNRG-FAFLEFSSRSDAMDAFKRLQKRDV 379
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK + + KG+AF+ F T E A +A+ EL + GK+ + +Q LF+GN+ + W
Sbjct: 218 MKNALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTW 277
Query: 61 GEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ ++ + G + LV+D +N NRGFAF+++ + A A + +++
Sbjct: 278 TKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVF 337
Query: 120 -DDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
D V++AD + SQV+ +++ LP +DR+++ G+I K+ +
Sbjct: 338 GTDRTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARN 397
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVL 214
P +R+ +GFV F SA+ + + E +DG+ L
Sbjct: 398 MPAAKRTDFGFVTFDTHDSAVACVDSINNSELVDGERL 435
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 107/201 (53%), Gaps = 10/201 (4%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GY F + + QA+++LN E+ KGK + + RLFIG +P++ +D+
Sbjct: 101 NGLNRGYGFCLYTNRNDTKQAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDE 160
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ ++K+ GV + + + +NRGFAF+EY NH A +R+K+ + L +
Sbjct: 161 IMLEMSKVTDGVKDVIVYPSLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQI 220
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 181
V WA+P R + + S+V+ LYV+NL T++ +K+ F A H + + +
Sbjct: 221 AVDWAEPERQVDENIMSKVRILYVRNLMLHTTENAVKDHFNQAIHS------MDAVERVK 274
Query: 182 ERSRYGFVHFAERSSAMKALK 202
+ Y FVHF R A+ ALK
Sbjct: 275 KIRDYAFVHFHNRIDAITALK 295
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q L++GN+ + W ++ +++ +
Sbjct: 323 KGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 382
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEY--YNHACAEYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D + +NRGFAF+E+ + A + R + + F +D A V
Sbjct: 383 KHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKLA-KV 441
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK +++ LP +D +++L +G+I K+ + P R
Sbjct: 442 SFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKD 501
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
YGFV F +A+K + E+
Sbjct: 502 YGFVTFGTHDAAVKCADSITGTEL 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ E D+RK ++G V + L+ +PQ +N+GFAF+ + A+ +
Sbjct: 284 VFVGGLDKDATESDLRKVFGEVGV-VTEVRLMMNPQT-KKNKGFAFLRFETVEQAKRAVA 341
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ NP + + + + LY+ N+ K T++ LKE H+G +T
Sbjct: 342 ELKNPVI------------NGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYG-VT 388
Query: 171 KV-----VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
V V G+ R + F+ F RS AM A K ++ ++
Sbjct: 389 NVEDLTLVEDTNDEGKNRG-FAFLEFPSRSEAMDAFKRLQRRDV 431
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 5/194 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q L++GN+ + W ++ +++ +
Sbjct: 273 KGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 332
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEY--YNHACAEYSRQKMSNPKFKLDDNAPTV 126
G V + LV+D + +NRGFAF+E+ + A + R + + F +D A V
Sbjct: 333 KHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKPA-KV 391
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK +++ LP +D +++L +G+I K+ + P R
Sbjct: 392 SFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKD 451
Query: 186 YGFVHFAERSSAMK 199
YGFV F +A+K
Sbjct: 452 YGFVTFGSHDAAVK 465
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G + ++ E D+RKA ++G V + L+ +PQ +N+GFAF+ + A+ +
Sbjct: 234 VFVGGLDKDATESDLRKAFGEVG-VVTEVRLMMNPQT-KKNKGFAFLRFETVEQAKRAVA 291
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ NP + + + + LY+ N+ K T++ LKE H+G +T
Sbjct: 292 ELKNPVI------------NGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYG-VT 338
Query: 171 KV-----VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
V V G+ R + F+ F RS AM A K ++ ++
Sbjct: 339 NVEDLTLVEDTNDEGKNRG-FAFLEFPSRSEAMDAFKRLQRRDV 381
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
MK + + KG+AF+ F T E A +A+ EL + GK+ + +Q LF+GN+ + W
Sbjct: 157 MKNALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTW 216
Query: 61 GEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ ++ + G + LV+D +N NRGFAF+++ + A A + +++
Sbjct: 217 TKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVF 276
Query: 120 -DDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
D V++AD + SQV+ +++ LP +DR+++ G+I K+ +
Sbjct: 277 GTDRTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARN 336
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVL 214
P +R+ +GFV F SA+ + + E +DG+ L
Sbjct: 337 MPAAKRTDFGFVTFDTHDSAVACVDSINNSELVDGERL 374
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 90 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVK 148
+NRGF F+EY +H A +++++ + K+ V WADP+ + S+VK LYV+
Sbjct: 1 ENRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEGTMSKVKVLYVR 60
Query: 149 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208
NL DI++++LKE F ++G++ +V ++ Y FVH+ +R + + A+++ + +
Sbjct: 61 NLTHDISEEKLKEHFENYGRVERV--------KKIKDYAFVHYEDRDNTVLAMRDLDGKD 112
Query: 209 IDGQVLDCSLAKPQADQK 226
I G ++ SLAKP +D+K
Sbjct: 113 IGGSCIEVSLAKPPSDKK 130
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 54/227 (23%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELK---GKKIKCSAAQAKHRLFIGNVPRNWGEDDMR 66
+GY F+ F TKE A A++ L+S EL +++ +QAKH+LFIG +P ++++
Sbjct: 62 RGYGFIKFYTKEAAISAMDRLHSKELPDFPSTRVRIQPSQAKHKLFIGGIPHELSREELK 121
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
+ I + + + PTV
Sbjct: 122 DMLDPI----------------------------------VKGEAGGLAGGGIGEKQPTV 147
Query: 127 SWADPRNAE-----------------SSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+A+P + VK ++V NLP T+DRL+++F +G++
Sbjct: 148 DYAEPSQRDGGGGGGGGGGGGGGGGGGGGGGGVKNVFVGNLPPGATEDRLRDIFNKYGEV 207
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
+ IP + G S+YGFVHF ER++AM+A+++ EK E+DG +L+
Sbjct: 208 ERTHIPRPRDGDTHSKYGFVHFRERAAAMRAVEDVEKPELDGGLLNV 254
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q L++GN+ + W ++ +++ +
Sbjct: 233 KGFAFLRFETVEQARRAVVELKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKL 292
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTV 126
G V + L++D N NRGFAF+E+ + + A+ Y R + + F +D A V
Sbjct: 293 KHYGVEDVEDLTLIEDDTNEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPA-KV 351
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK +++ +LP +D +++L +G+I KV + P R
Sbjct: 352 SFADSFIDLGDEIMAQVKTVFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKN 411
Query: 186 YGFVHFAERSSAMK 199
YGFV F+ +A++
Sbjct: 412 YGFVTFSTHVAAVE 425
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E D++K K+G V + L+ +PQ +N+GFAF+ +
Sbjct: 183 VKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGV-VTEVRLMINPQ-TKRNKGFAFLRF 240
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
A + ++ NP + + + + LY+ N+ K ++ L
Sbjct: 241 ETVEQARRAVVELKNPVI------------NGKRCGVTPSQDSDTLYLGNICKTWKKEAL 288
Query: 160 KELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
KE H+G + ++ G R + F+ F+ RS A +A K +K ++
Sbjct: 289 KEKLKHYGVEDVEDLTLIEDDTNEGMNRG-FAFLEFSSRSDAKEAYKRLQKRDV 341
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELK---GKKIKCS------------AAQAKH 49
+ G +G+AF+ F ++ A +A + L ++ K K S AQ K
Sbjct: 311 NEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKT 370
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
+FI ++P +W ED +R + K G + +EL KD A + + + F+ + H A
Sbjct: 371 -VFIDSLPPSWNEDYVRDLLKKYGE-IEKVELAKD-MPAARRKNYGFVTFSTHVAA 423
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 6 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 65
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 66 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 125
Query: 125 TVSWADP 131
TV WADP
Sbjct: 126 TVEWADP 132
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP 131
TV WADP
Sbjct: 319 TVEWADP 325
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ +
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAV 220
Query: 110 QKMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ +N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTE 268
Query: 169 -ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 11/177 (6%)
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ-NAN-QNRGFAFIEYYNHACAEYSRQKM 112
N+P++ ++++ + GV+ + P AN +NRGF F+++ +H A +++K+
Sbjct: 7 NIPKSKSKEEILAEFKEHTEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKI 66
Query: 113 SNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 171
K + ++ V WA+ + + S+VK LYV+NL + +T+++LKE+FA HG++ +
Sbjct: 67 HAGKLRPWNSDLVVDWAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVER 126
Query: 172 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
++ Y F+HF ER A+KA++ ++G ++ SLAKPQ D+K +
Sbjct: 127 A--------KKIRDYAFIHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKKKT 175
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 18/177 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F G +P++ ED++ K G + + L+ DP NRG+AF+ + SR
Sbjct: 181 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPMTGT-NRGYAFVTFT-------SRD 231
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
N ++ V WADP+ + S+VK LYV+NL +D ++++LKE F GK+
Sbjct: 232 AACNAVREVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEAFGKV 291
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+V ++ Y FVHF +R A+ A+K+ + +I+G ++ SLAKP +D+K
Sbjct: 292 ERV--------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSDKK 340
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 50/224 (22%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFVT+ TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 95 SGENRGYAFVTYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 154
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF++Y +H
Sbjct: 155 ILDEIKKVTEGVVDVIVYPSATDKTKNRGFAFVKYESH---------------------- 192
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ER 183
+AA +VK L+V+NL T++ +K F KPG ER
Sbjct: 193 -----------RAAAMRVKVLFVRNLMISTTEETIKAEFNKF-----------KPGAVER 230
Query: 184 SR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223
+ Y FVHF R A+ A+ IDG ++ +LAKP +
Sbjct: 231 VKKLRDYAFVHFFNREDAVAAMSVISGKCIDGASIEVTLAKPHS 274
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 16/251 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELN----SCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
+G +G+AFVT+ A +A+ + N + + ++ + RLF GNVP++
Sbjct: 67 TGNTRGFAFVTYYNVWDAQKAVLKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKT 126
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK-MSNPKFKLD 120
DD+ + K G++ + + + NRGFAF+E+ +HA A +R+K +++ +
Sbjct: 127 RDDIENELKKFIDGIVKVITYPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPW 186
Query: 121 DNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V WA+P + +QVK LY+KN+P T DRLK + + ++ I
Sbjct: 187 GRKLYVDWAEPEPMVDPDVMTQVKVLYMKNVPTFWTLDRLKTYIS--KTVGEIFIERI-- 242
Query: 180 GQERSRYGFVHFAERSSAMKALK----NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 235
+R Y F+HF ERS A +ALK ++ +G+ ++ A+P K N
Sbjct: 243 -YKRDNYAFIHFDERSFAERALKIFDSVSQYLSFNGKQIEVEWARPSCYSK-KNRINEVP 300
Query: 236 SALNPTYPPHL 246
+ PP L
Sbjct: 301 DNFCTSVPPRL 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 19/155 (12%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+GN+PR+ ED++ +++ P + L+ D RGFAF+ YYN A+ +
Sbjct: 33 IFVGNIPRDLFEDELIPLFSQVAP-IYKFRLMMD--FTGNTRGFAFVTYYNVWDAQKAVL 89
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLK-ELFAHHG 167
K + K+ + N R ++ + + L+ N+PKD T+D ++ EL
Sbjct: 90 KFN--KYCIASNT--------RKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFID 139
Query: 168 KITKVVIPPAKPGQERSR-YGFVHFAERSSAMKAL 201
I KV+ P + +R + FV F +S A+ A+
Sbjct: 140 GIVKVITYPERNAHHFNRGFAFVEF--QSHAIAAI 172
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M G D G+++G+AFV+F A + L++ + KK+ + + R+FIG++P++
Sbjct: 244 MMGYD-GKSRGFAFVSFVEDGAAQRCKALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDK 302
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNAN--QNRGFAFIEYYNHACA------------- 105
+ + +T G +S +V Q N NRGFAF+E+ +H A
Sbjct: 303 SKQQFEEELTNNG---VSTWVVNQSQKDNGASNRGFAFVEFESHMDASTVKVQSFNKLHL 359
Query: 106 --EYSRQKMSNPKFKLDDN-APTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKE 161
E ++ + N L V WADP N + + S VK LYVK + T++ +K
Sbjct: 360 FYECFKKNLLNRSLALFGRYYQNVDWADPENTPDDNVMSTVKNLYVKGWSEARTEEEIKA 419
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLA 219
LF +G + KV ++ + + FVHF ER SA+KA++ N + + D +V+D SLA
Sbjct: 420 LFEPYGVVEKV--------KKINNFSFVHFVERDSALKAIEAMNGKNFGND-EVIDVSLA 470
Query: 220 KP 221
KP
Sbjct: 471 KP 472
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F E A +A+ EL + + GK+ + +Q L++GN+ + W ++ +++ +
Sbjct: 256 KGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 315
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTV 126
G V I LV+D + NRGFAF+E+ + + A + R + + F +D A V
Sbjct: 316 KHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPA-KV 374
Query: 127 SWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + SQVK +++ LP +D ++ L +G++ K+ + P R
Sbjct: 375 SFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKD 434
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
YGFV F +A++ + E+
Sbjct: 435 YGFVTFGSHDAAIRCADSITGTEL 458
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ EDD+RK +++G V + L+ +PQ +N+GFAF+ +
Sbjct: 206 VKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGV-VTEVRLMMNPQT-KKNKGFAFLRF 263
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
N A+ + ++ NP + + + + LY+ N+ K T++ L
Sbjct: 264 ENVEQAKRAVAELKNPVI------------NGKQCGVTPSQDSDTLYLGNICKTWTKEAL 311
Query: 160 KELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEI 209
KE H+G I + ++ + F+ F+ RS AM A K +K ++
Sbjct: 312 KEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDV 364
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 115/222 (51%), Gaps = 7/222 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G+ K +AF+ + + A +A+E+ E+ GK+ + + +F+GN+ + W D+
Sbjct: 536 TGKNKRFAFLRYSSAADAKKALEKYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDV 595
Query: 66 RKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
K + +IG I + ++ DP N +NRGFAF+E H A+ + +K+ N
Sbjct: 596 IKLLQEIGIEKIDKVIVMTDPSNVGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQNI- 654
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
V+WA+P + + +VK++Y + LP +++L+ F G+I +V+ R
Sbjct: 655 KVAWAEPLSEPDEEELLKVKSVYAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRR 714
Query: 184 SRYGFVHFAERSSAMKALKN--TEKYEIDGQVLD--CSLAKP 221
+ F++F+ R +A+ +++ E +G ++ SLAKP
Sbjct: 715 KDFAFINFSTREAALACIESFYHETLTNEGSQVNVKVSLAKP 756
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 4/212 (1%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 61
K + KGYAFV F K +A+ E+ + ++GK+ + ++ LF+GN+ W
Sbjct: 59 KNLSTNRNKGYAFVKFANKGHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWT 118
Query: 62 EDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FK 118
++ +R+ + G GV +I +V D Q+ ++RGFAF+E+ H A + +++ P F
Sbjct: 119 KEAIRQKLKDYGVEGVENITVVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQKPDVVFG 178
Query: 119 LDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ V++++P R + +QVK +++ LP +D ++E +G+I ++V+
Sbjct: 179 HPERTAKVAFSEPIREPDPEIMAQVKTIFLDGLPPHWDEDHVRECVKGYGEIVRIVLARN 238
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
+R +GFV F+ +A+ ++ E
Sbjct: 239 MSTAKRKDFGFVDFSTHEAAVACIEGINNREF 270
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
K +KIK ++ +F+G + R+ E+D+RK KIG V+ + L K+ + N+N+G+A
Sbjct: 18 KERKIK-----KEYEIFVGGLDRDATEEDLRKVFEKIGE-VVEVRLHKN-LSTNRNKGYA 70
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 155
F+++ N + + +M NP + + ++ + L++ N+ T
Sbjct: 71 FVKFANKGHVKRALSEMKNPVIR------------GKRCGTAPSEDNDTLFLGNICNTWT 118
Query: 156 QDRLKELFAHHGK--ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 209
++ +++ +G + + + P + RSR + F+ FA + AM A K +K ++
Sbjct: 119 KEAIRQKLKDYGVEGVENITVVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQKPDV 175
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ + T E A +A+ EL + ++GK+ + + LF+GN+ + W ++ +++ +
Sbjct: 231 KGFAFLRYATVEQARRAVSELKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKL 290
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYN--HACAEYSRQKMSNPKFKLDDNAPTV 126
G + LV+D N NRG+A +E+ A + R + + F +D +A V
Sbjct: 291 KSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRSA-KV 349
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QV+ +++ LP +DR+K+ +G I KV + P +R
Sbjct: 350 SFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKD 409
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
+GFV F +A+ EI
Sbjct: 410 FGFVTFDTHDNAVACADGITNSEI 433
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E D+RK ++G + + L+ +P +N+GFAF+ Y
Sbjct: 181 VKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGE-ITEVRLMMNPV-TKKNKGFAFLRY 238
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
A E +R+ +S K P+V + + + L+V N+ K T++ L
Sbjct: 239 ---ATVEQARRAVSELK------NPSVRG---KQCGVAPSHDNDTLFVGNICKTWTKEHL 286
Query: 160 KELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
KE +G +V PG R Y + F+ R AM A + +K ++
Sbjct: 287 KEKLKSYGVENFDDLLLVEDSNNPGMNRG-YALLEFSTRPEAMDAFRRLQKRDV 339
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ EL + + GK+ + +Q L++GN+ + W ++ +++ +
Sbjct: 239 KGFAFLRFETVEQARRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKL 298
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTV 126
G V + L++D N NRGFAF+E+ + + A+ Y R + + F +D A V
Sbjct: 299 KHYGVENVEDLTLIEDGTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVDKPA-KV 357
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QVK ++V +LP + +++L +G+I K+ + P R
Sbjct: 358 SFADSFIDLGDEIMAQVKTVFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKN 417
Query: 186 YGFVHFAERSSAMK 199
YGFV F+ ++A++
Sbjct: 418 YGFVTFSTHAAAVE 431
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E D++K K+G V + L+ +PQ +N+GFAF+ +
Sbjct: 189 VKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGV-VTEVRLMINPQ-TKRNKGFAFLRF 246
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
A + ++ NP + + + + LY+ N+ K ++ L
Sbjct: 247 ETVEQARRAVVELKNPVI------------NGKQCGVTPSQDSDTLYLGNICKTWKKEAL 294
Query: 160 KELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
KE H+G + ++ G R + F+ F+ RS A +A + +K ++
Sbjct: 295 KEKLKHYGVENVEDLTLIEDGTNEGMNRG-FAFLEFSSRSDAKEAYRRLQKRDV 347
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 3 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELK---GKKIKCS------------AAQA 47
G + G +G+AF+ F ++ A +A L ++ K K S AQ
Sbjct: 315 GTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQV 374
Query: 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
K +F+ ++P +W E +R + K G + IEL KD A + + + F+ + HA A
Sbjct: 375 KT-VFVDSLPPSWDEVYVRDLLKKYGE-IEKIELAKD-MPAARRKNYGFVTFSTHAAA 429
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 42 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 101
CS+ RLF+G +P++ ++++ + K+ V + + + N+NRGFAF+EY
Sbjct: 238 CSSVD-NCRLFVGGIPKSRKKEEIMHELKKVTDKVADVIVYPSAADKNKNRGFAFVEYET 296
Query: 102 HACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLK 160
H A +R+K+ + + +L N V WA+P + + +VK LYV+NL + +++ L+
Sbjct: 297 HKAAAMARRKLVSGRVQLWGNPIAVDWAEPEEDVDDDIMKEVKVLYVRNLLIETSEESLR 356
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
F+ +G++ +V ++ Y FVHF ER SA A+K +DG+
Sbjct: 357 AHFSQYGQVERV--------KKIRDYAFVHFVERESADAAVKAGCSQRLDGE 400
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ F T E A +A+ +L + ++GK+ + ++ LF+GN+ + W ++ ++ +
Sbjct: 235 KGFAFLRFETVEQAKRAVSDLKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKL 294
Query: 70 TKIGPGVISIE------LVKDPQNANQNRGFAFIEYYN--HACAEYSRQKMSNPKFKLDD 121
+ +E LV+D N NRG+A +E+ A + R + + F +D
Sbjct: 295 K-----IYEVENFDDLILVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDR 349
Query: 122 NAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
A VS+AD + +QV+ +++ LP +DR+K+ +G I KV + P
Sbjct: 350 TA-KVSFADSYPEVDDEMMAQVRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPA 408
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEI 209
+R +GFV F +A+ + EI
Sbjct: 409 AKRKDFGFVTFDTHDNAVACVDGITSSEI 437
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 27/178 (15%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E D+RK +++G + + L+ +P +N+GFAF+ +
Sbjct: 185 VKAHRKRKEFEVFVGGLDKDATESDLRKVFSEVG-EITEVRLMMNPVT-KKNKGFAFLRF 242
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
A+ + + NP + A R+ ++ L+V N+ K T++ L
Sbjct: 243 ETVEQAKRAVSDLKNPMVR----GKQCGVAPSRDNDT--------LFVGNICKTWTKEHL 290
Query: 160 KELFAHHGKITKV--------VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
K+ KI +V V PG R Y + F+ R AM A + +K ++
Sbjct: 291 KDKL----KIYEVENFDDLILVEDSNNPGMNRG-YALLEFSTRPEAMDAFRRLQKRDV 343
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 3/208 (1%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+ ++KGY FV +R A + + E ++ K + A ++ + N+ + W ++D+
Sbjct: 304 TWKSKGYCFVRYREPSQAKKVVAEFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDI 363
Query: 66 RKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP-KFKLDDNA 123
K + K G + + L+ D N N G+AF+E A + K+S F+ N
Sbjct: 364 MKLLHKTGVENIDKVTLMADCDNPGYNCGYAFLELETERDAWMAYIKLSRKGVFRRCLNI 423
Query: 124 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV+WA + QVK+++V+ +P+ +L E+F+ +G I + V+ +R
Sbjct: 424 -TVAWAKAMSDRDEEMQQVKSIFVEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKR 482
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDG 211
S + FVH+ +A+ L+ +K E+ G
Sbjct: 483 SDFAFVHYTTHEAAILCLELFDKEELTG 510
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GY +V F + A QA+E LN L G+ I+ +Q K +FI N+ ++ +
Sbjct: 55 GYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQ 114
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
++ + G ++S ++V D Q++G+ F+ + CAE + +K++N + D
Sbjct: 115 KELYDTFSFFG-RILSCKIVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDR 169
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V P+ S A +VK LY+KN P + ++LKE+F G+I + G
Sbjct: 170 VVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEG 229
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV F + A A+K EI+G+ L C+ A+ + +++
Sbjct: 230 KSKG-FGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLF 52
++G++KGY FV F +E A +AIE++N+ ++ + + K A + K + L+
Sbjct: 136 ENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLY 195
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N P + +++ + G + S ++KD + +++GF F+ + + AE + + M
Sbjct: 196 IKNFPPETDNEKLKEMFNEFGE-IKSACVMKDSE--GKSKGFGFVCFLDPDHAENAVKTM 252
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRL 159
+ K + + + AE ++ + LYVKNL +I RL
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 160 KELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
+E F+ HG IT + K RS+ +GFV FA A +A+ + I + L +L
Sbjct: 313 EEAFSVHGSITSAKV--MKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVAL 370
Query: 219 AKPQADQK 226
A+ + D++
Sbjct: 371 AQRKEDRR 378
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + ++ ++IGP V+S + +D + G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRHSLGYGYVNFEDPKHAEQALE 72
Query: 111 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYES--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 229 GGSNSQKSALNPTY 242
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 16/229 (6%)
Query: 8 EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRN 59
++ GY +V F + A QA+E LN L G+ I+ +Q K +FI N+ ++
Sbjct: 52 QSLGYGYVNFEDPKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKS 111
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ ++ + G ++S ++V D Q++G+ F+ + CAE + +K++N +
Sbjct: 112 IEQKELYDTFSFFG-RILSCKIVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MII 166
Query: 120 DDNAPTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
D V P+ S A +VK LYVKN P + ++LKE+F+ G+I +
Sbjct: 167 RDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKD 226
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A A++ EI+G+VL C+ A+ + +++
Sbjct: 227 NEGKSKG-FGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLF 52
++G++KGY FV F +E A +AIE++N+ ++ + + K A + K + L+
Sbjct: 136 ENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLY 195
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N P + +++ ++ G + S ++KD N +++GF F+ Y + AE + + M
Sbjct: 196 VKNFPPETDNEKLKEMFSEFGE-IKSACVMKD--NEGKSKGFGFVCYLDPDHAENAVRTM 252
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRL 159
+ K + + + AE + + LYVKNL +I RL
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRL 312
Query: 160 KELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
+E F+ HG IT + K RS+ +GFV FA A +A+ + I + L +L
Sbjct: 313 EEAFSVHGSITSAKV--MKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVAL 370
Query: 219 AKPQADQK 226
A+ + D++
Sbjct: 371 AQRKEDRR 378
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + ++ ++IGP V+S + +D Q+ G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRD-LATRQSLGYGYVNFEDPKHAEQALE 72
Query: 111 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYEP--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 229 GGSNSQKSALNPTY 242
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GY +V F + A QA+E LN L G+ I+ +Q K +FI N+ ++ +
Sbjct: 55 GYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQ 114
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
++ + G ++S ++V D Q++G+ F+ + CAE + +K++N + D
Sbjct: 115 KELYDTFSFFG-RILSCKIVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDR 169
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V P+ S A +VK LY+KN P + ++LKE+F G+I + G
Sbjct: 170 VVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEG 229
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV F + A A+K EI+G+ L C+ A+ + +++
Sbjct: 230 KSKG-FGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLF 52
++G++KGY FV F +E A +AIE++N+ ++ + + K A + K + L+
Sbjct: 136 ENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLY 195
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N P + +++ + G + S ++KD + +++GF F+ + + AE + + M
Sbjct: 196 IKNFPPETDNEKLKEMFNEFGE-IKSACVMKDSE--GKSKGFGFVCFLDPDHAENAVKTM 252
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRL 159
+ K + + + AE ++ + LYVKNL +I RL
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 160 KELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
+E F+ HG IT + K RS+ +GFV FA A +A+ + I + L +L
Sbjct: 313 EEAFSVHGSITSAKV--MKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVAL 370
Query: 219 AKPQADQK 226
A+ + D++
Sbjct: 371 AQRKEDRR 378
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + ++ ++IGP V+S + +D + G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRHSLGYGYVNFEDPKHAEQALE 72
Query: 111 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYES--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 229 GGSNSQKSALNPTY 242
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ + T E A +A+ +L + ++GK+ + + LF+GN+ + W ++ ++ +
Sbjct: 240 KGFAFLRYATVEQARRAVSDLKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKL 299
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYN--HACAEYSRQKMSNPKFKLDDNAPTV 126
+ LV+D N NRG+A +E+ A + R + + F +D +A V
Sbjct: 300 KSYEVENFDDLILVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGVDRSA-KV 358
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QV+ +++ LP +DR+K+ +G I KV + P +R
Sbjct: 359 SFADSYPEVDDEMMAQVRTIFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKD 418
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
+GFV F +A+ + EI
Sbjct: 419 FGFVTFDTHDNAVACVDGITSSEI 442
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 19/171 (11%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + + +F+G + ++ E D+RK +++G + + L+ +P +N+GFAF+ Y
Sbjct: 190 VKANRKRKEFEVFVGGLDKDATESDLRKVFSEVGE-ISEVRLMMNPVT-KKNKGFAFLRY 247
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT---- 155
A E +R+ +S+ K P V + + + L+V N+ K T
Sbjct: 248 ---ATVEQARRAVSDLK------NPLVRG---KQCGVAPSHDNDTLFVGNICKTWTKEHL 295
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206
+D+LK + +V PG R Y + F+ R AM A + +K
Sbjct: 296 KDKLKSYEVENFDDLILVEDSNNPGMNRG-YALLEFSTRPEAMDAFRRLQK 345
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 17/191 (8%)
Query: 37 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 96
G+ + A+ RLF+G +P+ +++ + K+ GV+ + + + +NRGFAF
Sbjct: 296 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAF 355
Query: 97 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDIT 155
+EY +H A +R+++ + +L + V WA+P + S VK LYV+NL +
Sbjct: 356 VEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTS 415
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALKNTEKYEID 210
++ +++ F KPG ER + Y FVHF+ R A++A+K +D
Sbjct: 416 EEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 464
Query: 211 GQVLDCSLAKP 221
G ++ +LAKP
Sbjct: 465 GSPIEVTLAKP 475
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
S ++G+ +V F T E + +I+ LN LK A + L+IGN+P++ +DD+
Sbjct: 35 STLSRGFGYVNFTTMEAVAVSIDLLNGLILKETGAMQVNANVPNCLYIGNIPKSKDKDDI 94
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + + G++++ GF +EY + A +++Q+++N K+ +
Sbjct: 95 KTEFSIVSGGILNVI----SAETKLIWGFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDII 150
Query: 126 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
V WADP A+ +K L+V + K + +R+KELF HG P + ++ +
Sbjct: 151 VDWADPNEAKKHKI--IKVLHVGIISKRSSMERIKELFGEHG--------PIQLVEKFAD 200
Query: 186 YGFVHFAERSSAMKALKNTEKYEID 210
Y FVH R A KA+++ +D
Sbjct: 201 YAFVHCENRDDAAKAVEDLNDRTVD 225
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GY +V F + A QA+E LN L G+ I+ +Q K +FI N+ ++ +
Sbjct: 55 GYGYVNFEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQ 114
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
++ + G ++S ++V D Q++G+ F+ + CAE + +K++N + D
Sbjct: 115 KELYDTFSFFG-RILSCKIVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDR 169
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V P+ S A +VK LY+KN P + ++LKE+F G+I + G
Sbjct: 170 VVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEG 229
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV F + A A+K EI+G+ L C+ A+ + +++
Sbjct: 230 KSKG-FGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLF 52
++G++KGY FV F +E A +AIE++N+ ++ + + K A + K + L+
Sbjct: 136 ENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLY 195
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N P + +++ + G + S ++KD + +++GF F+ + + AE + + M
Sbjct: 196 IKNFPPETDNEKLKEMFNEFGE-IKSACVMKDSE--GKSKGFGFVCFLDPDHAENAVKTM 252
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRL 159
+ K + + + AE ++ + LYVKNL +I RL
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 160 KELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
+E F+ HG IT + K RS+ +GFV FA A +A+ + I + L +L
Sbjct: 313 EEAFSVHGSITSAKV--MKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVAL 370
Query: 219 AKPQADQK 226
A+ + D++
Sbjct: 371 AQRKEDRR 378
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + ++ ++IGP V+S + +D + G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRHSLGYGYVNFEDPKHAEQALE 72
Query: 111 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYES--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 229 GGSNSQKSALNPTY 242
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 7/218 (3%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 64
+ + + Y FV + +E A AIE LN ++G + I+ + K RLF+ N+P+
Sbjct: 149 NNQNRRYCFVRYTNEEDARLAIELLNHHFVRGNQTIEVQKSFEKCRLFVANLPKELDRKT 208
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + P + + + + NRGFAF+++ +H A ++++ + ++ D
Sbjct: 209 IEVSFRSLFPEMTRLVMHNRIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDI 268
Query: 125 TVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
+ WA+P+ A + S A +VK L+V+N+ ++ L LF+ +V K + R
Sbjct: 269 KIVWANPQRALDHSNADEVKTLFVRNVDLQVSTKELYMLFSRVVDRQDIV----KISRVR 324
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ FV F R A A+ + ++++G LD A P
Sbjct: 325 E-FAFVEFTRRFHAAFAMHAVQGFQLNGYTLDIEWAMP 361
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEEL------NSCELKGKKIKCSAAQAKHRLFIG 54
+K K +GE KG+ FV F T + A++ ++ + + +K A K+ L++G
Sbjct: 85 VKNKFTGETKGFGFVKFATLDAVHAALDMAVLPSFRDAVSARVQTVKVVRADPKNVLYVG 144
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA-EYSRQKMS 113
N+PR EDD+R A+ + + +++G+ + + +H CA + R S
Sbjct: 145 NIPRGLSEDDVRLALQEATTTYEVTKFKLCTTLEGESKGYGWATFKDHKCAVQGMRLLQS 204
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
P F L N V A+PR E ++VK+L+V+ + + +K F KVV
Sbjct: 205 TPVFGLYLN---VHMAEPRTQEEDMLARVKSLFVRGVSPTTNAEAMKAFFGD--GCEKVV 259
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
IP + + FVHFA R A A++ + ++G+
Sbjct: 260 IPLDVTTRAVLGHAFVHFATRQQAEAAMQRCQNATLEGE 298
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+ ++ R + +++ A + G ++ LV + + +GF F+++ +
Sbjct: 55 IFVSDIARGVTDQELKDAFSSAGQ--VTDALVVKNKFTGETKGFGFVKFATLDAVHAALD 112
Query: 111 KMSNPKFKLDDNAPT----VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
P F+ +A V ADP+N LYV N+P+ +++D ++
Sbjct: 113 MAVLPSFRDAVSARVQTVKVVRADPKNV----------LYVGNIPRGLSEDDVRLALQEA 162
Query: 167 G---KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223
++TK + G+ + YG+ F + A++ ++ + + G L+ +A+P+
Sbjct: 163 TTTYEVTKFKLCTTLEGESKG-YGWATFKDHKCAVQGMRLLQSTPVFGLYLNVHMAEPRT 221
Query: 224 DQK 226
++
Sbjct: 222 QEE 224
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 5/204 (2%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AF+ + T E A +A+ EL + ++GK+ + + LF+GN+ + W ++ ++ +
Sbjct: 253 KGFAFLRYATVEQARRAVSELKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKL 312
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYN--HACAEYSRQKMSNPKFKLDDNAPTV 126
G + L +D N NRG+A +E+ A + + + F +D +A V
Sbjct: 313 KSYGVESFDDLLLAEDTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVDRSA-KV 371
Query: 127 SWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
S+AD + +QV+ +++ LP +DR+K+ +G I KV + P +R
Sbjct: 372 SFADSYPQVDDEIMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKD 431
Query: 186 YGFVHFAERSSAMKALKNTEKYEI 209
+GFV F +A+ + EI
Sbjct: 432 FGFVTFDTHDNAVACTEGMSNSEI 455
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Query: 34 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 93
E + +K + + +F+G + ++ E+D+ K ++G + + L+ +P +N+G
Sbjct: 197 EEHNEMVKEHRKRKEFEIFVGGLDKDATENDLMKVFGEVGE-ITEVRLMMNPVT-KKNKG 254
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKD 153
FAF+ Y A E +R+ +S K P V + + + L+V N+ K
Sbjct: 255 FAFLRY---ATVEQARRAVSELK------NPLVRG---KQCGVAPSHDNDTLFVGNICKT 302
Query: 154 ITQDRLKELFAHHGKITKVVIPPAK----PGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
T++ LK+ +G + + A+ PG R Y + F+ R AM A + +K ++
Sbjct: 303 WTKEHLKDKLKSYGVESFDDLLLAEDTNNPGMNRG-YALLEFSTRPEAMDAFRTLQKRDV 361
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 37/252 (14%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL------------KGKKIKCSAAQAKH--RL 51
+GE+KGY FV F T+E A +AIE+L+ + +G++++ +AK +
Sbjct: 135 AGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNV 194
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FI N+P W + + + + G V+S+ L D ++R F F+ + H CAE +K
Sbjct: 195 FIKNLPAEWDDAKLTEVFGEHG-SVMSVALATD--ENGKSRQFGFVSFETHECAEKVVEK 251
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQ 156
+ + +F + + AE A +VK LYVKNL IT
Sbjct: 252 LHDKEF---EGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITD 308
Query: 157 DRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
D L+E FA +G IT KV+ G +GFV F A KA+ I + L
Sbjct: 309 DILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPL 368
Query: 215 DCSLAKPQADQK 226
+LA+ + ++K
Sbjct: 369 YVALAQRKDERK 380
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ E A +AI+ +N ELKGK I+ +Q L FI N+ +
Sbjct: 53 GYAYVNFQRPEDAERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ + A +++G+ F+ + A + +K+ ++D
Sbjct: 113 KMLYDTFSAFG-NILSCKV--NVNLAGESKGYGFVHFETEEAAVKAIEKLDG--MLMNDK 167
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R A Q +++KNLP + +L E+F HG + V + +
Sbjct: 168 KVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDE 227
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R ++GFV F A K ++ E +G+ + A+ +A+++
Sbjct: 228 NGKSR-QFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQ 274
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
++G+++ + FV+F T E A + +E+L+ E +GKKI AQ K
Sbjct: 227 ENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKK 270
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 72 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131
+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP
Sbjct: 5 LTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 64
Query: 132 -RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 190
+ ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVH
Sbjct: 65 VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVH 116
Query: 191 FAERSSAMKAL 201
F +R +A+KA+
Sbjct: 117 FEDRGAAVKAM 127
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RN 133
G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP
Sbjct: 3 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 62
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+ ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +
Sbjct: 63 PDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFED 114
Query: 194 RSSAMKAL 201
R +A+KA+
Sbjct: 115 RGAAVKAM 122
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 31/249 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL------------KGKKIKCSAAQAKH--RL 51
+GE+KGY FV F T+E A +AIE+L+ + +G++++ +AK +
Sbjct: 120 AGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNV 179
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
FI N+P W + + + + G V+S+ L D ++R F F+ + H CAE +K
Sbjct: 180 FIKNLPAEWDDAKLTEVFGEHG-SVMSVALATDEN--GKSRQFGFVSFETHECAEKVVEK 236
Query: 112 MSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ + +F K + A + E + Q LYVKNL IT D L
Sbjct: 237 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDIL 296
Query: 160 KELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
+E FA +G IT KV+ G +GFV F A KA+ I + L +
Sbjct: 297 REHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVA 356
Query: 218 LAKPQADQK 226
LA+ + ++K
Sbjct: 357 LAQRKDERK 365
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 19/221 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVT 70
GYA+V F+ E A +AI+ +N +L + ++A + + W K T
Sbjct: 53 GYAYVNFQRPEDAERAIDTMNFIQL---SVNLASAISSS--------KTWTRLSTTKCCT 101
Query: 71 KIGPGVISIELVKDPQN-ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129
+I K N A +++G+ F+ + A + +K+ ++D V
Sbjct: 102 IPFSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDG--MLMNDKKVFVGRF 159
Query: 130 DPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 185
R A Q +++KNLP + +L E+F HG + V + + G+ R +
Sbjct: 160 KSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSR-Q 218
Query: 186 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+GFV F A K ++ E +G+ + A+ +A+++
Sbjct: 219 FGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQ 259
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 24/119 (20%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G+++ + FV+F T E A + +E+L+ E +GKKI AQ K
Sbjct: 212 ENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKH 271
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
L++ N+ + +D +R+ G S + +++GF F+ +
Sbjct: 272 ERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCF 330
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 10 KGYAFVTFRTKELASQAIEELNS-----------CELKGKKIKCSAAQAKHRLFIGNVPR 58
KG+AF+ + T E A +A+ EL + ++GK+ + + LF+GN+ +
Sbjct: 176 KGFAFLRYATVEQARRAVSELKNPSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVGNICK 235
Query: 59 NWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYN--HACAEYSRQKMSNP 115
W ++ +++ + G + LV+D N NRG+A +E+ A + R + +
Sbjct: 236 TWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDV 295
Query: 116 KFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
F +D +A VS+AD + +QV+ +++ LP +DR+K+ +G I KV +
Sbjct: 296 VFGVDRSA-KVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVEL 354
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
P +R +GFV F +A+ EI
Sbjct: 355 ARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEI 389
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+K + + +F+G + ++ E D+RK ++G + + L+ +P +N+GFAF+ Y
Sbjct: 126 VKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGE-ITEVRLMMNPV-TKKNKGFAFLRY 183
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA--SQVKALYVKNLPKDITQD 157
A + ++ NP L + + R + A L+V N+ K T++
Sbjct: 184 ATVEQARRAVSELKNPSVGL---KIWIFYIMVRGKQCGVAPSHDNDTLFVGNICKTWTKE 240
Query: 158 RLKELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
LKE +G +V PG R Y + F+ R AM A + +K ++
Sbjct: 241 HLKEKLKSYGVENFDDLLLVEDSNNPGMNRG-YALLEFSTRPEAMDAFRRLQKRDV 295
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GY +V F + A QA+E LN L G+ I+ +Q K +FI N+ ++ +
Sbjct: 55 GYGYVNFEDPKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQ 114
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
++ + G ++S ++V D Q++G+ F+ + CAE + +K++N + D
Sbjct: 115 KELYDTFSFFGR-ILSCKIVMDENG--QSKGYGFVHFEKEECAERAIEKINN--MIIRDR 169
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V P+ S A +VK LYVKN P + ++LKE+F+ G+I + G
Sbjct: 170 VVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEG 229
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV + + A A++ EI+G+VL C+ A+ + +++
Sbjct: 230 KSKG-FGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + ++ ++IGP V+S + +D Q+ G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRQSLGYGYVNFEDPKHAEQALE 72
Query: 111 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYEP--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K+
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQ 185
Query: 229 GGSNSQKSALNPTYPPHLGYGMVGGAYGALG 259
+ +PP + + G
Sbjct: 186 ARKVKFNNLYVKNFPPETDNEKLKEMFSEFG 216
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLF 52
++G++KGY FV F +E A +AIE++N+ ++ + + K A + K + L+
Sbjct: 136 ENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLY 195
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N P + +++ ++ G + S ++KD N +++GF F+ Y + AE + + M
Sbjct: 196 VKNFPPETDNEKLKEMFSEFGE-IKSACVMKD--NEGKSKGFGFVCYLDPDHAENAVRTM 252
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 146/361 (40%), Gaps = 72/361 (19%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SGE+KGY FV + E A AIE+LN + KK+ K +F+
Sbjct: 158 SGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFV 217
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ EDD+R+ K G + S+ +++ + +++ F F+ + + A + Q ++
Sbjct: 218 KNLSETTTEDDLREIFGKFG-TITSVVVMR--EGDGRSKCFGFVNFESPDEAALAVQDLN 274
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LY+KNL + ++L
Sbjct: 275 GKKF--DDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKL 332
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ELFA G IT + G R GFV F A +AL + + L +LA
Sbjct: 333 RELFAEFGAITSCKVMRDSNGASRGS-GFVAFKSAEDASRALAEMNNKMVGSKPLYVALA 391
Query: 220 KPQADQKTSGGSNSQKSALNPT------------YPP-------HLGYGMVGGAYGALGA 260
+ + D+K +Q S L P +PP L YG A+
Sbjct: 392 QRKEDRKAR--LQAQFSQLRPVPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPAFINPQP 449
Query: 261 GYVPAGFAQPMVYG-RGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 319
G+ GF QP++ G R AP M+PM VQQ P +P R G
Sbjct: 450 GF---GFQQPLMPGMRPGAPMPNFMMPM---------------VQQGQQPQRPSGRRAGT 491
Query: 320 G 320
G
Sbjct: 492 G 492
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 18/211 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T A++A+E LN + G+ I+ + +FI N+ ++
Sbjct: 76 GYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDN 135
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D + +++G+ F++Y A + +K++ ++D
Sbjct: 136 KALYDTFCVFG-NILSCKVATDA--SGESKGYGFVQYERDEAAHAAIEKLNG--MLMNDK 190
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + ++ VK ++VKNL + T+D L+E+F G IT VV+ + G
Sbjct: 191 KVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVV--MREG 248
Query: 181 QERSR-YGFVHFAERSSAMKALKNTEKYEID 210
RS+ +GFV+F A A+++ + D
Sbjct: 249 DGRSKCFGFVNFESPDEAALAVQDLNGKKFD 279
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
+G +G+ F + +E +A++ELN + + ++ E+++
Sbjct: 140 NGINRGFGFCVYTNREDTKRAVQELNIMKFEKER--------------------QSEEEI 179
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ ++ GV + + +NRGFAFIEY +H A +R+K+ L +
Sbjct: 180 LSEMKRVTDGVKDVISYPSVTDKTKNRGFAFIEYGSHKAAAMARRKLLPGHIHLWGHQIA 239
Query: 126 VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQE 182
V WA+P R S+VK LYV+NL T++ L++ F A G V + ++
Sbjct: 240 VDWAEPEREVNEDIMSKVKILYVRNLMLSTTEESLRDSFIKAAGGDPNSV-----ERVKK 294
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
S Y F+HF ER A++ L IDG ++ + AKP
Sbjct: 295 ISDYAFIHFREREQALQCLHTLNDTYIDGSKIEVTWAKP 333
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 151/361 (41%), Gaps = 73/361 (20%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAK-HRLFI 53
SGE+KGY FV + E A AI++LN + KK+ S Q K + +++
Sbjct: 164 SGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYV 223
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ N EDD+++ K G + S +++ + +++ F F+ + + A + Q+++
Sbjct: 224 KNLSENTTEDDLKEIFGKFG-TITSAVVMR--EGDGRSKCFGFVNFESPDDAAQAVQELN 280
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LY+KNL + D+L
Sbjct: 281 GKKF--DDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKL 338
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ELFA +G IT + G R GFV F A +AL + + L +LA
Sbjct: 339 RELFAEYGTITSCKVMRDSNGVSRGS-GFVAFKSAEDASRALAEMNSKMVGSKPLYVALA 397
Query: 220 KPQADQKTSGGSNSQKSALNPT------------YPP-------HLGYGMVGGAYGALGA 260
+ + D+K +Q S L P +PP L YG A+
Sbjct: 398 QRKEDRKAR--LQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINTQP 455
Query: 261 GYVPAGFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGG 318
G+ GF QP++ G GA P ++PM VQQ P +P R G
Sbjct: 456 GF---GFQQPLMPGMRPGAGPMPNFIMPM---------------VQQGQQPQRPAGRRAG 497
Query: 319 A 319
A
Sbjct: 498 A 498
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + A++A+E LN + GK I+ + +FI N+ ++
Sbjct: 82 GYAYVNYSSPADAARALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDN 141
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D + +++G+ F++Y A+ + K++ ++D
Sbjct: 142 KALYDTFCVFG-NILSCKVATDA--SGESKGYGFVQYERDEAAQAAIDKLNG--MLMNDK 196
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + ++ QVK +YVKNL ++ T+D LKE+F G IT V+ + G
Sbjct: 197 KVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVV--MREG 254
Query: 181 QERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
RS+ +GFV+F A +A++ E++G+ D
Sbjct: 255 DGRSKCFGFVNFESPDDAAQAVQ-----ELNGKKFD 285
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 30/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGYAFV F T+E A++AIE++N L GKK+ K AK+
Sbjct: 142 ENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTN 201
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ N + +D+ R + G ++S +++D ++ ++RGF F+ Y H A+ + +
Sbjct: 202 LYVKNFRDDISDDEFRDLFEQCGK-IVSCVVMRD--DSGKSRGFGFVSYETHEAAQKAVE 258
Query: 111 KMSNPKFKL------------DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++ +F L + +A + + E Q LYVKNL I +
Sbjct: 259 TLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAK 318
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ FA+ G IT + + G R +GFV F+ A KA+ I + L +L
Sbjct: 319 LRQEFANFGTITSAKVMSDEKGISRG-FGFVCFSSPEEATKAVTEMNGRIIISKPLYVAL 377
Query: 219 AKPQADQK 226
A+ + D+K
Sbjct: 378 AQRKEDRK 385
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 20/213 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ LN + GK + +Q L FI N+ ++
Sbjct: 61 GYAYVNFQQPNDAERALDTLNFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDN 120
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK-----MSNPKF 117
+ + G ++S ++ D +N N ++G+AF+ + A + +K +S K
Sbjct: 121 KAIYDTFSAFG-NILSCKIALD-ENGN-SKGYAFVHFETQEAANRAIEKVNGMLLSGKKV 177
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+ +S + + A++ LYVKN DI+ D ++LF GKI V+
Sbjct: 178 FV---GHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD 234
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
G+ R +GFV + +A KA++ + E D
Sbjct: 235 DSGKSRG-FGFVSYETHEAAQKAVETLNEKEFD 266
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 29/252 (11%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFI 53
+ GE++GY FV F +E A +AI+ +N L + + + ++ +++
Sbjct: 131 EKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYV 190
Query: 54 GNVPRNWG-EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
N+P ++ DD++K K G + S L KD + ++RGF F+ + N A + + M
Sbjct: 191 KNLPDSYATNDDLKKLFEKFGT-ITSTFLAKDEND--KSRGFGFVNFENSEAANAAVEAM 247
Query: 113 SNPKFKLDDNA-------------PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ + + D D E ++ LY+K+LP+D+T+D L
Sbjct: 248 NEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDAL 307
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
++ F+ G IT + I G R +GFV+F A A++ IDG+ L +LA
Sbjct: 308 RDKFSKFGTITSLKIMTDNNGDSRG-FGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALA 366
Query: 220 KPQADQKTSGGS 231
+ D++ S
Sbjct: 367 LRKVDRQKQLAS 378
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 16/215 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVP 57
S ++ GYA+V ++ A A+EELN ++ K + AQ A R +FI N+
Sbjct: 45 SRQSLGYAYVNYQQHADAKHALEELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLN 104
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + + G ++S ++ D + ++RG+ F+ + A+ + + N K
Sbjct: 105 KEIDNKALYDTFSAFGT-ILSCKVAADEK--GESRGYGFVHFEKEEDAQKAIDTV-NGKM 160
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI-TQDRLKELFAHHGKITKVVIPP 176
L + + E +YVKNLP T D LK+LF G IT +
Sbjct: 161 LLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFL-- 218
Query: 177 AKPGQERSR-YGFVHFAERSSAMKALKNTEKYEID 210
AK ++SR +GFV+F +A A++ + EI+
Sbjct: 219 AKDENDKSRGFGFVNFENSEAANAAVEAMNEKEIE 253
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 41/294 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK----------HRLFIGN 55
+G +KGY FV F + A +AI+ +N E++GK + Q + +F+ N
Sbjct: 148 NGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKN 207
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+P G+D++ K T+ G V S ++KD + + ++GF FI + + CA + +++
Sbjct: 208 LPAELGDDELSKMATEFGE-VTSAVVMKDEKGS--SKGFGFINFKDAECAAKCVEALNDK 264
Query: 116 KF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF 163
+ K + A + E Q LYVKNL ++ D L++LF
Sbjct: 265 EIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLF 324
Query: 164 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223
G IT + G+ + +GFV F A +A+ + G+ L +LA+ +
Sbjct: 325 TSCGTITSCKVMKDTSGKSKG-FGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKD 383
Query: 224 DQKTSGGSNSQK----SALNPTYPPHLGYGMVGGAYG-------ALGAGYVPAG 266
++ +N Q A+ T PP+ GM G YG A G G +PAG
Sbjct: 384 VRRAQLEANVQNRLGMGAM--TRPPNPMTGM--GPYGPGAMPFFAAGPGGMPAG 433
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ ++ E + + + +GP V SI + +D ++ G+A++ Y + + + +
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGP-VASIRVCRDAVT-RRSLGYAYVNYNSALDPQAAER 80
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M + + + P + W+ DP S+ S V +++KNL K I L + F+ G
Sbjct: 81 AMETLNYHVLNGKPMRIMWSHRDP----SARKSGVGNIFIKNLDKSIDAKALHDTFSAFG 136
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
KI + G + YGFVHF ++++A +A++ + EI+G+++ + +AD+
Sbjct: 137 KILSCKVATDANGVSKG-YGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ 195
Query: 228 SGGSNSQKSALNPTYPPHLG 247
G + + P LG
Sbjct: 196 --GKDVYTNVFVKNLPAELG 213
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 149/354 (42%), Gaps = 57/354 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SGE+KGY FV + E A AI ELN L KK+ K +++
Sbjct: 166 SGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYV 225
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ED++++ GP + S+ +V+ + ++R F F+ + N A ++ + ++
Sbjct: 226 KNLSESTTEDNLKELFGNFGP-ITSVIVVR--ADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 114 NPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQD-R 158
KF DD V A + N E++ +Q LY+KNL + D +
Sbjct: 283 GKKF--DDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEK 340
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKELFA G IT + G + GFV F A +AL + + L +L
Sbjct: 341 LKELFAEFGTITSCKVMRDSNGVNKGS-GFVAFKSSEDATRALVAMNGKMVGSKPLYVAL 399
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGM------VGGAYGALGAGYVPAGFAQPMV 272
A+ + +++ +Q S + P PP + M V G L G P F P
Sbjct: 400 AQRKEERRAR--LQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQP 457
Query: 273 ---YGRGAAPG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAG 320
+ + PG G+A +P +V+ P VQQ P +P R GAG
Sbjct: 458 GYGFQQHMIPGMRPGVAPMP--------NFVM--PMVQQGQQPQRPSGRRAGAG 501
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 20/238 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGE 62
GYA+V F + A++A+E LN + GK I+ S +FI N+ ++
Sbjct: 84 GYAYVNFSSPADAARALEMLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDN 143
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ + + +++G+ F++Y A+ + +++ L+D
Sbjct: 144 KALYDTFSAFG-NILSCKVAT--EMSGESKGYGFVQYEQDESAQNAINELNG--MLLNDK 198
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P V + N S + +YVKNL + T+D LKELF + G IT V++ A
Sbjct: 199 KVYVGPFVRKQERENVFGSP--KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRAD 256
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
G+ R +GFV+F A+ A+++ + D + L A+ +++++ + +KS
Sbjct: 257 DGKSRC-FGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKS 313
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 149/354 (42%), Gaps = 57/354 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SGE+KGY FV + E A AI ELN L KK+ K +++
Sbjct: 166 SGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYV 225
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ED++++ GP + S+ +V+ + ++R F F+ + N A ++ + ++
Sbjct: 226 KNLSESTTEDNLKELFGNFGP-ITSVIVVR--ADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 114 NPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQD-R 158
KF DD V A + N E++ +Q LY+KNL + D +
Sbjct: 283 GKKF--DDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEK 340
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKELFA G IT + G + GFV F A +AL + + L +L
Sbjct: 341 LKELFAEFGTITSCKVMRDSNGVNKGS-GFVAFKSSEDATRALVAMNGKMVGSKPLYVAL 399
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGM------VGGAYGALGAGYVPAGFAQPMV 272
A+ + +++ +Q S + P PP + M V G L G P F P
Sbjct: 400 AQRKEERRAR--LQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQP 457
Query: 273 ---YGRGAAPG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAG 320
+ + PG G+A +P +V+ P VQQ P +P R GAG
Sbjct: 458 GYGFQQHMIPGMRPGVAPMP--------NFVM--PMVQQGQQPQRPSGRRAGAG 501
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 20/238 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGE 62
GYA+V F + A++A+E LN + GK I+ S +FI N+ ++
Sbjct: 84 GYAYVNFSSPADAARALEMLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDN 143
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ + + +++G+ F++Y A+ + +++ L+D
Sbjct: 144 KALYDTFSAFG-NILSCKVAT--EMSGESKGYGFVQYEQDESAQNAINELNG--MLLNDK 198
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P V + N S + +YVKNL + T+D LKELF + G IT V++ A
Sbjct: 199 KVYVGPFVRKQERENVFGSP--KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRAD 256
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
G+ R +GFV+F A+ A+++ + D + L A+ +++++ + +KS
Sbjct: 257 DGKSRC-FGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKS 313
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
S + + Y FV + +E A AIE LN ++ + ++ + K RLF+GN+P++
Sbjct: 143 SNQNRRYCFVRYTNEEDAKVAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKT 202
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ A + P + + + NRGFAF+++ +HA A ++++ + ++ D
Sbjct: 203 IEIAFRSLFPEMTRFVMHNRISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREI 262
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG------KITKVVIPPA 177
+ WA+P R+ + S +VK L+V+N+ + L LF KIT+V
Sbjct: 263 KIVWANPQRSLDHSGVDEVKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKITRV----- 317
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ FV FA+R A + + Y + LD A P
Sbjct: 318 ------REFAFVEFAKREQAEMVMHAVQGYVLTQYPLDIEWAMP 355
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
S + + Y FV + +E A AIE LN ++ + ++ + K RLF+GN+P++
Sbjct: 143 SNQNRRYCFVRYTNEEDAKVAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKT 202
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ A + P + + + NRGFAF+++ +HA A ++++ + ++ D
Sbjct: 203 IEIAFRSLFPEMTRFVMHNRISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREI 262
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG------KITKVVIPPA 177
+ WA+P R+ + S +VK L+V+N+ + L LF KIT+V
Sbjct: 263 KIVWANPQRSLDHSGVDEVKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKITRV----- 317
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ FV FA+R A + + Y + LD A P
Sbjct: 318 ------REFAFVEFAKREQAEMVMHAVQGYVLTQYPLDIEWAMP 355
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 75/355 (21%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH---------RLFIG 54
K +G +KGY +V + T E A+ AIE+L+ + GK+++ + +FI
Sbjct: 132 KATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRPGQADWTNVFIK 191
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+P W ED +R+ G V+S + P+ + GF F+ + H A + ++M++
Sbjct: 192 NIPFEWTEDKLREEFEGFGE-VVSAK----PKEVQGSLGFGFVNFATHEAAAAAVKEMND 246
Query: 115 PKFKLDDNAPTVSWA--------------------DPRNAESSAASQVKALYVKNLPKDI 154
+F + ++ V+ + + A Q LYVKNL +
Sbjct: 247 KEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTV 306
Query: 155 TQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
T D L++ F+ G IT V+ K G R +GFV ++ A +A+ I G+
Sbjct: 307 TDDVLRDEFSAMGTITSARVMKDLKTGISRG-FGFVCYSTPEDATRAVNEMNGKIILGKP 365
Query: 214 LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVY 273
+ +LA+ + + +++ L + + G G + G G
Sbjct: 366 IFVALAQRR---------DVRRAQLEAQH--NQGRGNLPGPMG----------------- 397
Query: 274 GRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRR 328
GA PG + M M P PG+Q P PQ GRGG G + G R
Sbjct: 398 --GAYPGAVPMPGMYRPG---------PGMQPAYPVPQMMQGRGGYGMQAQPGGR 441
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 6/170 (3%)
Query: 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 102
SA + L+IG++ E + + +GP V SI + +D ++ G+A++ Y+
Sbjct: 3 SANFSSASLYIGDLLPEVNEGFLFEIFNAVGP-VASIRVCRDAVT-RRSLGYAYVNYHQV 60
Query: 103 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
A AE + M+ + K S DP S S V ++VKNL + I +L +
Sbjct: 61 ADAERALDSMNFTEIKGKPCRIMWSQRDP----SMRRSGVGNIFVKNLHEGIDNKQLYDT 116
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
F+ G I + K YG+VH+ +A A++ + IDG+
Sbjct: 117 FSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGK 166
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 20/209 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGK--KIKCSAAQAKHR------LFIGNVPRNWGE 62
GYA+V + A +A++ +N E+KGK +I S R +F+ N+
Sbjct: 51 GYAYVNYHQVADAERALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDN 110
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + ++G+ ++ Y + A + +K+ +D
Sbjct: 111 KQLYDTFSLFG-NILSCKVVTD-KATGLSKGYGYVHYETNEAAASAIEKLDG--MLIDGK 166
Query: 123 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V R+ A +++KN+P + T+D+L+E F G++ AKP +
Sbjct: 167 EVQVGVFMRRDNRPGQADWTN-VFIKNIPFEWTEDKLREEFEGFGEVVS-----AKPKEV 220
Query: 183 RSR--YGFVHFAERSSAMKALKNTEKYEI 209
+ +GFV+FA +A A+K E
Sbjct: 221 QGSLGFGFVNFATHEAAAAAVKEMNDKEF 249
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 142/361 (39%), Gaps = 70/361 (19%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SGE+KGY FV + E A AI ELN L KK+ K +++
Sbjct: 166 SGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYV 225
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ED++++ K GP + S+ +V+ + ++R F F+ + N A + + ++
Sbjct: 226 KNLSESTTEDNLKEMFGKFGP-ITSVIVVR--ADDGKSRCFGFVNFENPDDAARAVEDLN 282
Query: 114 NPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQD-R 158
KLDD V A + N E++ +Q LY+KNL + D +
Sbjct: 283 GK--KLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEK 340
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKELFA G IT + G + GFV F A +AL + + L +L
Sbjct: 341 LKELFAEFGTITSCKVMRDSNGVNKGS-GFVAFKSSEDASRALVAMNGKMVGSKPLYVAL 399
Query: 219 A----------KPQADQKTSGGSNSQKSALNPTYPP-------HLGYGMVGGAYGALGAG 261
A + Q Q + P YPP + YG + G
Sbjct: 400 AQRKEERRARLQAQFSQMRPVVMPPPVAPRMPMYPPGVPGMGQQMFYGQPPPPFVNPQPG 459
Query: 262 YVPAGFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 319
+ GF Q M+ G G AP ++PM VQQ P +P R GA
Sbjct: 460 F---GFQQHMIPGMRPGVAPMPNFVMPM---------------VQQGQQPQRPSGRRAGA 501
Query: 320 G 320
G
Sbjct: 502 G 502
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 20/238 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGE 62
GYA+V F + A++A+E LN + GK I+ S +FI N+ ++
Sbjct: 84 GYAYVNFSSPADAARAMEMLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDN 143
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ + + +++G+ F++Y A+ + +++ L+D
Sbjct: 144 KALFDTFSAFGT-ILSCKVATEI--SGESKGYGFVQYEQDESAQNAINELNG--MLLNDK 198
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P V + N S + +YVKNL + T+D LKE+F G IT V++ A
Sbjct: 199 KVYVGPFVRKQERENVFGSP--KFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRAD 256
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
G+ R +GFV+F A +A+++ ++D + L A+ +++++ +KS
Sbjct: 257 DGKSRC-FGFVNFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEKS 313
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 17/255 (6%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AFV F A A +++ + +KG+ A L + N+ +W +DD+ + +
Sbjct: 132 KGFAFVRFAAAWQARWAADDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEEL 191
Query: 70 -TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVS 127
T + I LV+DP+ +NRG+AF+++ + + K+ N L D VS
Sbjct: 192 KTYKLENLEDINLVEDPERKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVS 251
Query: 128 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
++ + + +VK++++ LP +D+++E+F G+I + + +R +G
Sbjct: 252 FSKTLSLDDKIMEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFG 311
Query: 188 FVHFAERSSAMKALKNTEK---YEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
F+ F R SA+ + K E G+V + SL +P+ K
Sbjct: 312 FIGFTSRQSALDCISTVSKGGIVEGSGKVRIKASLQRPRPTLKKHSWQG---------IT 362
Query: 244 PHLGY--GMVGGAYG 256
P LG G +G +YG
Sbjct: 363 PMLGIRRGFIGKSYG 377
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 38/237 (16%)
Query: 34 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 93
E++ K+ C + +G +PR+ E+D+ +A+ G V + LV+DP + N+G
Sbjct: 82 EVRRKRKDCE-------VLVGGLPRDAAEEDVARALADAGD-VEEVRLVRDPADPRSNKG 133
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKD 153
FAF+ + A ++ + K A + D + L+++N+ D
Sbjct: 134 FAFVRFAAAWQARWAADDVRTAMVK--GEACMICKNDAN----------ETLHLRNICFD 181
Query: 154 ITQDRLKELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKA---LKNTEK 206
T+D L E + + +V P + G+ R Y F+ F + A L+N +
Sbjct: 182 WTKDDLAEELKTYKLENLEDINLVEDPERKGKNRG-YAFLDFRTNVDGVDAFFKLQNRDI 240
Query: 207 Y---EIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 259
Y ++ QV S +K + D K KS PPH V +G G
Sbjct: 241 YLGTDVRAQV---SFSKTLSLDDKI---MEKVKSVFLDGLPPHWDEDKVREVFGKFG 291
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 17/157 (10%)
Query: 71 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 130
K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L + V WA+
Sbjct: 3 KVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAE 62
Query: 131 PR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR--- 185
P + S VK LYV+NL +++ +++ F + KPG ER +
Sbjct: 63 PEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIR 111
Query: 186 -YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 112 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 148
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 63/357 (17%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFIG 54
G+++GY FV F T++ A AIE+LN L K+I + +A + K +++
Sbjct: 166 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 225
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ +D+++ + G + S +++D ++R F F+ + N A + + ++
Sbjct: 226 NLSEVTTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 282
Query: 115 PKFKLDDNAPTVSWADPRN------------AESSAASQVKA--LYVKNLPKDITQDRLK 160
KF DD V A ++ S A ++ LYVKNL +T ++L+
Sbjct: 283 KKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLR 340
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
ELFA G IT + G + GFV F+ S A + L + G+ L +LA+
Sbjct: 341 ELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 399
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP- 279
+ +++ +Q S + P + P +G M GA G G Q + YG+G+ P
Sbjct: 400 RKEERRAK--LQAQFSQMRPAFIPGVGPRMPIFPGGAPGLG-------QQIFYGQGSPPI 450
Query: 280 ----GGMAMLPMLLPDGRIGYV-LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTD 331
G P L+P R + + QPG Q P P GGRRS D
Sbjct: 451 IPHQPGFGYQPQLVPGLRPSFFPMMQPG--QQGPRP--------------GGRRSGD 491
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 20/211 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GY +V + E A +A+++LN L GK I+ + + LF+ N+ ++
Sbjct: 83 GYGYVNYSNTEDAEKAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDN 142
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D + Q+RG+ F+++ A+ + +K+ N K L+D
Sbjct: 143 KTLHETFSGCGT-IVSCKVAAD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDK 197
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + SAA ++K +YVKNL + T D LK F +G I+ V+ + G
Sbjct: 198 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVV--MRDG 255
Query: 181 QERSR-YGFVHFAERSSAMKALK--NTEKYE 208
+SR +GFV+F A +A++ N +K++
Sbjct: 256 DGKSRCFGFVNFENPEDAARAVEALNGKKFD 286
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + T++ V+S+ + +D N + G+ ++ Y N AE + Q
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQ-VVSVRVCRDAA-TNTSLGYGYVNYSNTEDAEKAMQ 100
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
K++ N + S+ S V L+VKNL K + L E F+ G I
Sbjct: 101 KLNYSTL----NGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIV 156
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
+ GQ R YGFV F SA A++ +++G+VL+
Sbjct: 157 SCKVAADHMGQSRG-YGFVQFDTEDSAKNAIE-----KLNGKVLN 195
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 8 EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRN 59
++ GYA+V F + + A A+E LN + GK I+ + +FI N+ +
Sbjct: 74 QSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLS 133
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+R G V+S ++ D + Q++G+ F+++ + AE S +K++ L
Sbjct: 134 IDNKALRDTFAAFGT-VLSCKVAVD--SNGQSKGYGFVQFESEESAEISIEKLNG--MLL 188
Query: 120 DDNAPTVSWADPRNAESSAA--SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R+ E A SQ +YVKNLP+ T D LK LFA HG IT ++
Sbjct: 189 NDKQVYVGHF-IRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTD 247
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ + +GFV+F SA A++ ++DG VL
Sbjct: 248 SNGKSKC-FGFVNFQNTDSAAAAVE-----KLDGTVL 278
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGK------------KIKCSAAQAKHRLFI 53
+G++KGY FV F ++E A +IE+LN L K +I+ + +Q + +++
Sbjct: 159 NGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYV 217
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+P +DD++ G I+ +V N +++ F F+ + N A + +K+
Sbjct: 218 KNLPETTTDDDLKNLFAP--HGTITSAIVMTDSNG-KSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDR 158
DD V A R AE A + K LY+KNL I ++
Sbjct: 275 GTVLG-DDKTLYVGRAQ-RKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEK 332
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
LKELF+ +G IT + + G + GFV F+ A KAL
Sbjct: 333 LKELFSEYGTITSCKVMLDQHGLSKGS-GFVAFSSPDEATKAL 374
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 8 EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRN 59
++ GYA+V F + + A A+E LN + GK I+ + +FI N+ +
Sbjct: 74 QSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLS 133
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+R G V+S ++ D + Q++G+ F+++ + AE S +K++ L
Sbjct: 134 IDNKALRDTFAAFGT-VLSCKVAVD--SNGQSKGYGFVQFESEESAEISIEKLNG--MLL 188
Query: 120 DDNAPTVSWADPRNAESSAA--SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R+ E A SQ +YVKNLP+ T D LK LFA HG IT ++
Sbjct: 189 NDKQVYVGHF-IRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTD 247
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ + +GFV+F SA A++ ++DG VL
Sbjct: 248 SNGKSKC-FGFVNFQNTDSAAAAVE-----KLDGTVL 278
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 164/380 (43%), Gaps = 69/380 (18%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGK------------KIKCSAAQAKHRLFI 53
+G++KGY FV F ++E A +IE+LN L K +I+ + +Q + +++
Sbjct: 159 NGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYV 217
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+P +DD++ G I+ +V N +++ F F+ + N A + +K+
Sbjct: 218 KNLPETTTDDDLKNLFAP--HGTITSAIVMTDSNG-KSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDR 158
DD V A R AE A + K LY+KNL I ++
Sbjct: 275 GTVLG-DDKTLYVGRAQ-RKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEK 332
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV----- 213
LKELF+ +G IT + + G + GFV F+ A KAL E++G++
Sbjct: 333 LKELFSEYGTITSCKVMLDQHGLSKGS-GFVAFSSPDEATKALN-----EMNGKMKGRKP 386
Query: 214 LDCSLAKPQADQK-----------TSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGY 262
L ++A+ + ++K +GG +S S + P + P G V G G
Sbjct: 387 LYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGI-PGFHP--GAARVSPQQMYYGQGN 443
Query: 263 VPAGFAQPMVYGRGAAPGGMA-MLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSG-RGGAG 320
G A P G G P M+ M P + P+ + Y Q+ G P PRSG R G
Sbjct: 444 --PGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQG------QPGPRSGVRRGGN 495
Query: 321 SSSSGGRRSTDNGRGRS-RY 339
S ++ G G+S RY
Sbjct: 496 SQPLPQQQLPLRGYGQSFRY 515
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +AIE+LN +KGK + +Q L +I N+
Sbjct: 80 GYAYVNFHDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDN 139
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D + RGF F+ + N + A + + ++ ++D
Sbjct: 140 KSLHETFSTFG-NILSCKVATDDNGVS--RGFGFVHFENESDARDAIEAVNG--MLMNDQ 194
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V+W + S +VKA +YVKN+ + +Q+ ++LF+ +GKIT V+
Sbjct: 195 EVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDS 254
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GF++F + S+A +A+ + + GQ L
Sbjct: 255 EGKLRG-FGFINFEDHSTAARAVDELNESDFRGQTL 289
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
D+G ++G+ FV F + A AIE +N + +++ K +AK
Sbjct: 161 DNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTN 220
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +++ + +K G + S L KD + + RGF FI + +H+ A +
Sbjct: 221 IYVKNIDLETSQEEFEQLFSKYGK-ITSAVLEKDSEG--KLRGFGFINFEDHSTAARAVD 277
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ F K + + E A Q L++KNL I ++
Sbjct: 278 ELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEK 337
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LK+ FA G IT V + + G R +GFV F+ A KA+ + + G+ L ++
Sbjct: 338 LKDEFAPFGTITSVKVMKDEAGSSRG-FGFVCFSTPEEATKAITEKNQQLVAGKPLYVAI 396
Query: 219 AK 220
A+
Sbjct: 397 AQ 398
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 4 KDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
KDS G+ +G+ F+ F A++A++ELN + +G+ + AQ KH
Sbjct: 252 KDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETA 311
Query: 51 ------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFI 97
LFI N+ + ++ ++ G + S++++KD A +RGF F+
Sbjct: 312 RLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGT-ITSVKVMKD--EAGSSRGFGFV 367
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 24/231 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V F + A++AI+ELN L GK I+ + HR +FI N+ +
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDES 134
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q++G+ F++Y N A+ + +K++ L
Sbjct: 135 IDHKALHDTFSSFG-NIVSCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLL 189
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R S A++ K +YVKNL + T D LK F +GKIT V+
Sbjct: 190 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--M 247
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
K G+ +S+ +GFV+F A +A+++ ++ D + A+ +++++T
Sbjct: 248 KDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 50/310 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFI 53
SG++KGY FV + +E A +AIE+LN L K++ +A + K +++
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYV 219
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +DD++ A + G + S ++KD + +++GF F+ + N A + + ++
Sbjct: 220 KNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGE--GKSKGFGFVNFENADDAARAVESLN 276
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LYVKNL I+ ++L
Sbjct: 277 GHKF--DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KE+F+ G +T + G + GFV FA A +A+ I+ + L ++A
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
Query: 220 KPQADQKT---SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+ + D++ + S + A+ P+ P + GG G Q M YG+
Sbjct: 394 QRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG-----------PGIGQQMFYGQ- 441
Query: 277 AAPGGMAMLP 286
A P AM+P
Sbjct: 442 APP---AMIP 448
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 24/231 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V F + A++AI+ELN L GK I+ + HR +FI N+ +
Sbjct: 62 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDES 118
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q++G+ F++Y N A+ + +K++ L
Sbjct: 119 IDHKALHDTFSSFG-NIVSCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLL 173
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R S A++ K +YVKNL + T D LK F +GKIT V+
Sbjct: 174 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--M 231
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
K G+ +S+ +GFV+F A +A+++ ++ D + A+ +++++T
Sbjct: 232 KDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 282
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 50/310 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFI 53
SG++KGY FV + +E A +AIE+LN L K++ +A + K +++
Sbjct: 144 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYV 203
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +DD++ A + G + S ++KD + +++GF F+ + N A + + ++
Sbjct: 204 KNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGE--GKSKGFGFVNFENADDAARAVESLN 260
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LYVKNL I+ ++L
Sbjct: 261 GHKF--DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 318
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KE+F+ G +T + G + GFV FA A +A+ I+ + L ++A
Sbjct: 319 KEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 377
Query: 220 KPQADQKT---SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+ + D++ + S + A+ P+ P + GG G Q M YG+
Sbjct: 378 QRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG-----------PGIGQQMFYGQ- 425
Query: 277 AAPGGMAMLP 286
A P AM+P
Sbjct: 426 APP---AMIP 432
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+SG +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 185 ESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTN 244
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + +D R+ K G V S L +D A +NRGF F+ + NH A +
Sbjct: 245 IYVKNIPADATDDQFRELFEKFG-DVTSASLARD--EAGKNRGFGFVNFINHEHASAAVD 301
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ F K + + E ++ Q LYVKNL D+ ++
Sbjct: 302 ELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEK 361
Query: 159 LKELFAHHGKITKVVI 174
L+ELFA +G IT +
Sbjct: 362 LRELFAPYGAITSAKV 377
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T +A+EELN +KG+ + +Q + +FI N+
Sbjct: 104 GYAYVNYNTTIDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 163
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D + ++G+ F+ Y A + + ++ L++
Sbjct: 164 KALHDTFAAFG-NILSCKVAQD--ESGNSKGYGFVHYETDEAASQAIKHVNG--MLLNEK 218
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+P D T D+ +ELF G +T + +
Sbjct: 219 KVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDE 278
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F A A+ + GQ L
Sbjct: 279 AGKNRG-FGFVNFINHEHASAAVDELNGKDFMGQDL 313
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 17/255 (6%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AFV F A A +++ + +KG+ A L + N+ +W +DD+ + +
Sbjct: 132 KGFAFVRFAAAWQARWAADDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEEL 191
Query: 70 -TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVS 127
T + I LV+DP+ +NRG+AF+++ + + K+ N L D VS
Sbjct: 192 KTYKLENLEDINLVEDPERKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVS 251
Query: 128 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
++ + + +VK++++ LP +D+++E+F G+I + + +R +G
Sbjct: 252 FSKTLSLDDKIMEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFG 311
Query: 188 FVHFAERSSAMKALKNTEK---YEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
F+ F R SA+ + K E G+V + SL +P+ K
Sbjct: 312 FIGFTSRQSALDCISTVSKGGIVEGSGKVRIKASLQRPRPTLKKHSWQG---------IT 362
Query: 244 PHLGY--GMVGGAYG 256
P LG G +G +YG
Sbjct: 363 PMLGIRRGFIGKSYG 377
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 38/237 (16%)
Query: 34 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 93
E++ K+ C + +G +PR+ E+D+ +A+ G V + LV+DP + N+G
Sbjct: 82 EVRRKRKDCE-------VLVGGLPRDAAEEDVARALADAG-DVEEVRLVRDPADPRSNKG 133
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKD 153
FAF+ + A ++ + K A + D + L+++N+ D
Sbjct: 134 FAFVRFAAAWQARWAADDVRTAMVK--GEACMICKNDAN----------ETLHLRNICFD 181
Query: 154 ITQDRLKELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKA---LKNTEK 206
T+D L E + + +V P + G+ R Y F+ F + A L+N +
Sbjct: 182 WTKDDLAEELKTYKLENLEDINLVEDPERKGKNRG-YAFLDFRTNVDGVDAFFKLQNRDI 240
Query: 207 Y---EIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 259
Y ++ QV S +K + D K KS PPH V +G G
Sbjct: 241 YLGTDVRAQV---SFSKTLSLDDKI---MEKVKSVFLDGLPPHWDEDKVREVFGKFG 291
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 26/250 (10%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVP 57
+G +KGY FV F + A +AI+ +N E++GK + Q + +F+ N+P
Sbjct: 150 NGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLP 209
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA----CAEY-SRQKM 112
+ G+D++ K T+ G + S ++KD + + +GF FI + + C EY + ++M
Sbjct: 210 ADIGDDELGKMATEHGE-ITSAVVMKDDKGGS--KGFGFINFKDAESAAKCVEYLNEREM 266
Query: 113 SNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 165
S K + A A+ E Q LYVKNL ++ D L+ELFA+
Sbjct: 267 SGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFAN 326
Query: 166 HGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G IT + K G +S+ +GFV F A +A+ + G+ L +LA+ +
Sbjct: 327 SGTITSCKV--MKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDV 384
Query: 225 QKTSGGSNSQ 234
++ +N Q
Sbjct: 385 RRAQLEANMQ 394
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 11 GYAFVTFRTK---ELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNV 56
GYA+V + + + A +A+E LN + GK ++ + HR +FI N+
Sbjct: 65 GYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWS---HRDPSARKSGVGNIFIKNL 121
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ + + G ++S ++ D + +G+ F+ + + A A+ + Q ++ +
Sbjct: 122 DKTIDAKALHDTFSAFGK-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKE 178
Query: 117 F--KLDDNAPTVSWAD-PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K+ P AD P++ ++ ++VKNLP DI D L ++ HG+IT V
Sbjct: 179 IEGKIVYVGPFQKRADRPQDVYTN-------VFVKNLPADIGDDELGKMATEHGEITSAV 231
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G + +GF++F + SA K ++ + E+ G+ L
Sbjct: 232 VMKDDKGGSKG-FGFINFKDAESAAKCVEYLNEREMSGKTL 271
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 27/138 (19%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D G +KG+ F+ F+ E A++ +E LN E+ GK + AQ K
Sbjct: 236 DKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQ 295
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100
L++ N+ +D +R+ G + S +++KD + +++GF F+ +
Sbjct: 296 ERYLKYQGMNLYVKNLSDEVDDDALRELFANSG-TITSCKVMKD--GSGKSKGFGFVCFT 352
Query: 101 NHACAEYSRQKMSNPKFK 118
+H A + +M+ K
Sbjct: 353 SHDEATRAVTEMNGKMVK 370
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 153/362 (42%), Gaps = 71/362 (19%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFIG 54
G+++GY FV F T++ A AIE+LN L K+I + +A + K +++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 230
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ +D+++ + G + S +++D ++R F F+ + N A + + ++
Sbjct: 231 NLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKA--------------LYVKNLPKDITQDRLK 160
KF DD V A ++ S+ LYVKNL +T ++L+
Sbjct: 288 KKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
ELFA G IT + G + GFV F+ S A + L + G+ L +LA+
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGM---VGGAYGALGAGYVPAGFAQPMVYGRGA 277
+ +++ +Q S + P + P +G M GGA G Q + YG+G
Sbjct: 405 RKEERRAK--LQAQFSQMRPAFIPGVGPRMPIFTGGA----------PGLGQQIFYGQGP 452
Query: 278 AP-----GGMAMLPMLLPDGRIGYV---LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRS 329
P G P L+P R + + QPG Q P P GGRRS
Sbjct: 453 PPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPG--QQGPRP--------------GGRRS 496
Query: 330 TD 331
D
Sbjct: 497 GD 498
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GY +V + + A +A+++LN L GK I+ + + LF+ N+ ++
Sbjct: 88 GYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDN 147
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ +A + G ++S ++ D + Q+RG+ F+++ A+ + +K+ N K L+D
Sbjct: 148 KTLHEAFSGCGT-IVSCKVATD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDK 202
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + SAA ++K +YVKNL + T D LK F +G I+ V+ + G
Sbjct: 203 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDG 260
Query: 181 QERSR-YGFVHFAERSSAMKALK--NTEKYE 208
+SR +GFV+F A +A++ N +K++
Sbjct: 261 DGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + T++ V+S+ + +D N + G+ ++ Y N AE + Q
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQ-VVSVRVCRDAA-TNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
K++ N + S+ S V L+VKNL K + L E F+ G I
Sbjct: 106 KLNYSYL----NGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
+ GQ R YGFV F SA A++ +++G+VL+
Sbjct: 162 SCKVATDHMGQSRG-YGFVQFDTEDSAKNAIE-----KLNGKVLN 200
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 153/362 (42%), Gaps = 71/362 (19%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFIG 54
G+++GY FV F T++ A AIE+LN L K+I + +A + K +++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 230
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ +D+++ + G + S +++D ++R F F+ + N A + + ++
Sbjct: 231 NLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKA--------------LYVKNLPKDITQDRLK 160
KF DD V A ++ S+ LYVKNL +T ++L+
Sbjct: 288 KKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
ELFA G IT + G + GFV F+ S A + L + G+ L +LA+
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGM---VGGAYGALGAGYVPAGFAQPMVYGRGA 277
+ +++ +Q S + P + P +G M GGA G Q + YG+G
Sbjct: 405 RKEERRAK--LQAQFSQMRPAFIPGVGPRMPIFTGGA----------PGLGQQIFYGQGP 452
Query: 278 AP-----GGMAMLPMLLPDGRIGYV---LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRS 329
P G P L+P R + + QPG Q P P GGRRS
Sbjct: 453 PPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPG--QQGPRP--------------GGRRS 496
Query: 330 TD 331
D
Sbjct: 497 GD 498
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GY +V + + A +A+++LN L GK I+ + + LF+ N+ ++
Sbjct: 88 GYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDN 147
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ +A + G ++S ++ D + Q+RG+ F+++ A+ + +K+ N K L+D
Sbjct: 148 KTLHEAFSGCGT-IVSCKVATD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDK 202
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + SAA ++K +YVKNL + T D LK F +G I+ V+ + G
Sbjct: 203 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDG 260
Query: 181 QERSR-YGFVHFAERSSAMKALK--NTEKYE 208
+SR +GFV+F A +A++ N +K++
Sbjct: 261 DGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + T++ V+S+ + +D N + G+ ++ Y N AE + Q
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQ-VVSVRVCRDAA-TNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
K++ N + S+ S V L+VKNL K + L E F+ G I
Sbjct: 106 KLNYSYL----NGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
+ GQ R YGFV F SA A++ +++G+VL+
Sbjct: 162 SCKVATDHMGQSRG-YGFVQFDTEDSAKNAIE-----KLNGKVLN 200
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 36/239 (15%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----------KHRLFIGNVPRNWG 61
Y FV F A+ A++ +N + GK++K + A H +F+G++
Sbjct: 55 YCFVEFVEHSHAAAALQTMNGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVD 114
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
D++ A G + +VKD Q N+++G+ F+ + N AE + Q M+ L
Sbjct: 115 TPDLKAAFAPFGQ-ISDARVVKDLQ-TNKSKGYGFVSFLNKVDAENAIQGMNGQW--LSG 170
Query: 122 NAPTVSWAD-----PRNAES-----------SAASQVKALYVKNLPKDITQDRLKELFAH 165
A +WA PR E+ S++ +Y+ + +T+ +++E F+H
Sbjct: 171 RAIRTNWATRKPPPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSH 230
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+G I +V I P K Y F+ F SA A+ + +I+G ++ CS K +D
Sbjct: 231 YGHIQEVRIFPDK------GYAFIRFMTHESAAHAIVSVNGSQINGHMVKCSWGKESSD 283
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 6/169 (3%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++GN+ R E + + +IGP S +++ + N + F+E+ H+ A + Q
Sbjct: 16 LYVGNLDRQVTEAFILQLFGQIGP-CKSCKMIAE---HGGNDPYCFVEFVEHSHAAAALQ 71
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
M N + L V+WA ++ S ++V +L ++ LK FA G+I+
Sbjct: 72 TM-NGRMILGKEV-KVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFAPFGQIS 129
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ + YGFV F + A A++ + G+ + + A
Sbjct: 130 DARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWA 178
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 43
KGYAF+ F T E A+ AI +N ++ G +KCS
Sbjct: 243 KGYAFIRFMTHESAAHAIVSVNGSQINGHMVKCS 276
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA---AQAKHR-----------L 51
+G +KGY FV F +E A AI++LN + K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+P+ GED++RK K GVIS +V Q+ N +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQD 157
M+ L D+ V A ++ SQ LY+KNL + +
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 158 RLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+LKE+F+ +G +T KV++ P Q SR +GFV ++ A++AL I + L
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP----QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 215 DCSLAKPQADQK 226
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA++ F A +A+E LN L + I+ + K +FI N+ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ ++D
Sbjct: 150 KALFETFSSFG-TILSCKVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDK 204
Query: 123 APTVSWADPRNA----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R E++ + +YVKNLPK+I +D L++ F G I+ V+ +
Sbjct: 205 QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F +A A++ + VL A+ +++++
Sbjct: 265 SGNSRC-FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 8/202 (3%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AFV F A A +L +KGK L + N+ +W +DD+
Sbjct: 152 KGFAFVRFAAAWQARWAANDLREATIKGKACGICKNSETETLHLRNICFDWSKDDL---A 208
Query: 70 TKIGP----GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAP 124
K+ P + I L++ P +NRG+AF+++ H A + K+ L D+
Sbjct: 209 EKLKPFKLENLDRINLIEHPDRKGKNRGYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRA 268
Query: 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
+S+++ + + +VK++++ +P +D+++E+F G+I + + R
Sbjct: 269 NISFSNTLSQDDEIMEKVKSVFLDGVPPHWDEDKVREIFGKFGEIDSIQLARNMFTAARK 328
Query: 185 RYGFVHFAERSSAMKALKNTEK 206
+GF+ F R SA+ +K K
Sbjct: 329 DFGFIGFTARQSALDCIKMVNK 350
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 19/219 (8%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
+ + +F+ +P++ E+D+ +A+ G + + LV+DP + N+GFAF+ + A
Sbjct: 107 RVDYEVFVSGLPQDAAEEDVAQALADAG-DIEEVRLVRDPADQRLNKGFAFVRFAAAWQA 165
Query: 106 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD----RLKE 161
++ + K + S+ + L+++N+ D ++D +LK
Sbjct: 166 RWAANDLREATIK------------GKACGICKNSETETLHLRNICFDWSKDDLAEKLKP 213
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAK 220
+ ++ P + G+ R Y F+ F A++A +K ++ G +++
Sbjct: 214 FKLENLDRINLIEHPDRKGKNRG-YAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISF 272
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 259
+ KS PPH V +G G
Sbjct: 273 SNTLSQDDEIMEKVKSVFLDGVPPHWDEDKVREIFGKFG 311
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA---AQAKHR-----------L 51
+G +KGY FV F +E A AI++LN + K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+P+ GED++RK K GVIS +V Q+ N +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQD 157
M+ L D+ V A ++ SQ LY+KNL + +
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 158 RLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+LKE+F+ +G +T KV++ P Q SR +GFV ++ A++AL I + L
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP----QGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPL 402
Query: 215 DCSLAKPQADQK 226
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA++ F A +A+E LN L + I+ + K +FI N+ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ ++D
Sbjct: 150 KALFETFSSFG-TILSCKVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDK 204
Query: 123 APTVSWADPRNA----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R E++ + +YVKNLPK+I +D L++ F G I+ V+ +
Sbjct: 205 QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F +A A++ + VL A+ +++++
Sbjct: 265 SGNSRC-FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA---AQAKHR-----------L 51
+G +KGY FV F +E A AI++LN + K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+P+ GED++RK K GVIS +V Q+ N +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQD 157
M+ L D+ V A ++ SQ LY+KNL + +
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 158 RLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+LKE+F+ +G +T KV++ P Q SR +GFV ++ A++AL I + L
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP----QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 215 DCSLAKPQADQK 226
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGE 62
GYA++ F A +A+E LN L + I+ + K +FI N+ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ ++D
Sbjct: 150 KALFETFSSFG-TILSCKVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDK 204
Query: 123 APTVSWADPRNA----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R E++ + +YVKNLPK+I +D L++ F G I+ V+ +
Sbjct: 205 QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F +A A++ + VL A+ +++++
Sbjct: 265 SGNSRC-FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA---AQAKHR-----------L 51
+G +KGY FV F +E A AI++LN + K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+P+ GED++RK K GVIS +V Q+ N +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQD 157
M+ L D+ V A ++ SQ LY+KNL + +
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 158 RLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+LKE+F+ +G +T KV++ P Q SR +GFV ++ A++AL I + L
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP----QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 215 DCSLAKPQADQK 226
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA++ F A +A+E LN L + I+ + K +FI N+ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ ++D
Sbjct: 150 KALFETFSSFG-TILSCKVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDK 204
Query: 123 APTVSWADPRNA----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R E++ + +YVKNLPK+I +D L++ F G I+ V+ +
Sbjct: 205 QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F +A A++ + VL A+ +++++
Sbjct: 265 SGNSRC-FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 12/225 (5%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMR 66
GYA+V F +A+E+LN +KGK + +Q A + +GN+ +N E
Sbjct: 21 GYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPALRKTSLGNIFIKNLDESIDN 80
Query: 67 KAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
KA+ +I K + N ++G+ F+ Y AE + Q ++ L+D
Sbjct: 81 KALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAEAAIQAVNG--MLLNDKVVY 138
Query: 126 VSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
V PR + +V++ LYVK L +I++ ELFA +G++T V+ + G+
Sbjct: 139 VGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQDGK 198
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ +GFV+FA+ +A KAL E GQ L S A+ + +++
Sbjct: 199 SKG-FGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGERE 242
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 34/244 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS------AAQAK--------HR 50
++G +KGY FV + E A AI+ +N L K + QAK
Sbjct: 102 ENGLSKGYGFVHYEGGEAAEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTN 161
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ + E + + K G V S L D +++GF F+ + +H A +
Sbjct: 162 LYVKGLAPEISEAEFSELFAKYGQ-VTSAVLQVD--QDGKSKGFGFVNFADHEAAAKALT 218
Query: 111 KMSNPKFKLDDNAPTVSWA--------------DPRNAESSAASQVKALYVKNLPKDITQ 156
++ + + K VS A + + + S Q LYVKNL D+ +
Sbjct: 219 ELHDSEHK--GQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDE 276
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
+++ FA G IT I + G + +GFV F+ A KA+ + L
Sbjct: 277 EKVTAEFAAFGTITSTKIMRDEKGASKG-FGFVCFSSPDEATKAVTELNGKMFGQKPLYV 335
Query: 217 SLAK 220
SLA+
Sbjct: 336 SLAQ 339
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 24/231 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V F + A++AI+ELN L GK I+ + HR +FI N+ +
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDES 134
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q++G+ F++Y N A+ + +K++ L
Sbjct: 135 IDHKALHDTFSVFG-NIVSCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLL 189
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R S A++ K +YVKNL + T D LK F +GKIT V+
Sbjct: 190 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--M 247
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
K G +S+ +GFV+F A +A+++ ++ D + A+ +++++T
Sbjct: 248 KDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 44/297 (14%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFI 53
SG++KGY FV + +E A +AIE+LN L K++ +A + K +++
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYV 219
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +DD++ A + G + S ++KD +++GF F+ + N A + + ++
Sbjct: 220 KNLAESTTDDDLKNAFGEYGK-ITSAVVMKD--GDGKSKGFGFVNFENADDAARAVESLN 276
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LYVKNL I+ ++L
Sbjct: 277 GHKF--DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KE+F+ G +T + G + GFV F+ A +A+ I+ + L ++A
Sbjct: 335 KEIFSPFGTVTSCKVMRDPNGTSKGS-GFVAFSTPEEATEAMSQLSGKMIESKPLYVAIA 393
Query: 220 KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+ + D++ S + A+ P+ P + GG G Q M YG+G
Sbjct: 394 QRKEDRRAQ-FSQVRPVAMQPSVGPRMPVYPPGG-----------PGIGQQMFYGQG 438
>gi|308802151|ref|XP_003078389.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS)
[Ostreococcus tauri]
gi|116056841|emb|CAL53130.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS),
partial [Ostreococcus tauri]
Length = 430
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 20/220 (9%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIKCSAAQAKHRLFIGNVPR 58
M + +G+ +GYAF + E A++AIE + S E+ G+KI+ S K R+F+G + +
Sbjct: 186 MTDRATGKHRGYAFARYGDPESAAKAIETIESARVEIGGQKIRASVKPNKTRVFVGGIRK 245
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDP------QNANQNRGFAFIEYYNHACAEYSRQKM 112
+ + +A+ G G+ EL + + ++N G + YYN ACAE + M
Sbjct: 246 DATRAECVEALRARGAGLEFFELARPKKKKEGVEQTDENGGHGWATYYNEACAERFMKNM 305
Query: 113 SNPKFKL------DDNAPTVSWADPRNAESSAASQVKALYVKNL-PKDITQDRLKELFAH 165
+ KL D T SWA + A ++ ++ L+V++L + T++ ++E F
Sbjct: 306 REAEDKLPIANESDTRGMTTSWATVK-ASAAKVQGIRTLHVRDLNSTNATEEAMRECFGR 364
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 205
G I V + + + +V FA + A KAL E
Sbjct: 365 FGDIEDVQLRTDR----EPHFAWVTFANPNDAEKALGECE 400
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 159/385 (41%), Gaps = 75/385 (19%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 53
SGE++GY FV F E A AI++LN + KK+ S+ +++
Sbjct: 159 SGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYV 218
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ +D++++ K G + S +++D + ++R F F+ + N A + Q+++
Sbjct: 219 KNLSDTVTDDELKEMFGKYGT-ITSAVVMRD--SDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
F +D V A ++ E + Q LY+KNL ++I ++L
Sbjct: 276 GKIF--NDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKL 333
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ELFA +G IT + G R GFV F A +AL + + L +LA
Sbjct: 334 RELFAEYGNITSCKVMRDSNGVSRGS-GFVAFKSAEDANRALTEMNGKMVGSKPLYVALA 392
Query: 220 KPQADQKTSGGSNSQKSALNPT------------YPP-------HLGYGMVGGAYGALGA 260
+ + D+K +Q S + P +PP L YG A+ A
Sbjct: 393 QRKEDRKAK--LQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQA 450
Query: 261 GYVPAGFAQPMVYG-RGAAPGGMAMLPMLL-------PDGRIGYVLQQP----GVQQHNP 308
G+ F QP++ G R P M+PM+ P GR +QQP G QQ P
Sbjct: 451 GF---AFQQPLMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFP 507
Query: 309 PPQPRSGRGGAGSSSSGGRRSTDNG 333
RGG G GR D G
Sbjct: 508 -------RGGRGYRYPTGRGMPDPG 525
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 25/223 (11%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNV 56
+S ++ GYA+V + + A++A+E LN + GK I+ S +FI N+
Sbjct: 71 NSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNL 130
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
++ + G ++S ++ DP + ++RG+ F+++ A+ + K++
Sbjct: 131 DKSIDNKALYDTFCAFG-NILSCKIATDP--SGESRGYGFVQFEKDESAQSAIDKLNG-- 185
Query: 117 FKLDDN----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
++D P V D N S+ + +YVKNL +T D LKE+F +G IT
Sbjct: 186 MLINDKKVFVGPFVRKQDRENVSSNI--KFSNVYVKNLSDTVTDDELKEMFGKYGTITSA 243
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
V+ G+ R +GFV+F +A +A++ E++G++ +
Sbjct: 244 VVMRDSDGKSRC-FGFVNFENADAAAQAVQ-----ELNGKIFN 280
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + A +A+E+LN +K K + +Q + +FI N+
Sbjct: 99 GYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDN 158
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D A+ +G+ F+ Y AE + + ++ +L+D
Sbjct: 159 KALHDTFAAFG-DILSCKVAMDSTGAS--KGYGFVHYVTAESAEAAIKGVNG--MQLNDK 213
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR + +V+A LY+KNLP ++T + L E+F+ +G +T + +
Sbjct: 214 VVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADE 273
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
G+ R +GFV++ SA KA++ + G +L + A+
Sbjct: 274 SGKHRG-FGFVNYENHESASKAVEALHDKDYKGNILYVARAQ 314
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 139/339 (41%), Gaps = 44/339 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RL 51
+G +KGY FV + T E A AI+ +N +L K + K +A L
Sbjct: 181 TGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNL 240
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
+I N+P +++ + +K GP V S + D + ++RGF F+ Y NH A + +
Sbjct: 241 YIKNLPTEVTTEELNEMFSKYGP-VTSAAVQAD--ESGKHRGFGFVNYENHESASKAVEA 297
Query: 112 MSNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ + +K ++ +A + + E++ Q LY+KNL + ++L
Sbjct: 298 LHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKL 357
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ F G IT + G R +GFV F+ A KA+ + + L SLA
Sbjct: 358 QAEFLPFGTITSCKVMKDDKGVSRG-FGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLA 416
Query: 220 KPQADQKTS-GGSNSQKSALNPTYPPHLGYGMVGGAYGAL--------GAGYVPAGFAQP 270
+ + +K SQ++ + G+ G YGA A Y P G
Sbjct: 417 QRKDVRKQQLEAQMSQRAQMRSQQ--IAAAGIPGAPYGAPPNQMYYGGAAAYPPPGRG-- 472
Query: 271 MVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPP 309
M Y P GM P P G++ + PG + PP
Sbjct: 473 MAYPPNGMPAGMPPRPRYAPPGQMP-PMGMPGAPHYQPP 510
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +AIE+LN +KGK + +Q L +I N+
Sbjct: 80 GYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDN 139
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D + RGF F+ + N + A + + + ++D
Sbjct: 140 KSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDARDAIEAVDG--MLMNDQ 194
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V+ + S +VKA +YVKN+ ++ +Q+ +ELF +GKIT V+
Sbjct: 195 EVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDS 254
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F + ++A KA+ + E GQ L
Sbjct: 255 EGKLRG-FGFVNFEDHAAAAKAVDELNELEFKGQKL 289
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEE-----LNSCEL--------KGKKIKCSAAQAKH-R 50
++G ++G+ FV F + A AIE +N E+ K ++ K +AK
Sbjct: 161 ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTN 220
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +++ + K G + S L KD + + RGF F+ + +HA A +
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGK-ITSAVLEKDSEG--KLRGFGFVNFEDHAAAAKAVD 277
Query: 111 KMSNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ +FK + + E A Q L+VKNL I ++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE FA G IT + + G R +GFV F+ A KA+ + + G+ L ++
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 219 AK 220
A+
Sbjct: 397 AQ 398
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 4 KDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
KDS G+ +G+ FV F A++A++ELN E KG+K+ AQ K+
Sbjct: 252 KDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAA 311
Query: 51 ------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFI 97
LF+ N+ + ++ +++ G + S ++++D +RGF F+
Sbjct: 312 RLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGT-ITSAKVMRD--ETGNSRGFGFV 367
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GY +V F + A +A+E LN G+ I+ +Q K +FI N+ + +
Sbjct: 43 GYGYVNFEEPKDAERALENLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQ 102
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + IG ++S ++ D ++G+ F+ + CAE + +K++ ++D
Sbjct: 103 KQLYDTFSFIG-KILSCKIAMDEH--GNSKGYGFVHFEKEECAERAIEKING--MMINDR 157
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V P + SA+ +++ +YVKN P D T ++L+++F+ G+I + G
Sbjct: 158 VVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEG 217
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV F + A +A++ EI+G+ L S A+ + +++
Sbjct: 218 KSKG-FGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQ 262
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 33/249 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELK------GKKIKCS---AAQAKHR---LF 52
+ G +KGY FV F +E A +AIE++N + GK I S +A K R ++
Sbjct: 124 EHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFNNIY 183
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N P + ++ +R ++ G + S + K+P+ +++GF F+ +++ AE + + M
Sbjct: 184 VKNFPPDTTDEKLRDMFSEFGE-IKSCCVEKNPEG--KSKGFGFVCFHDPDHAEQAVRVM 240
Query: 113 SNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQD 157
+ ++ A S A + Q LYVKNL +I +
Sbjct: 241 HGKE--INGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDE 298
Query: 158 RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
RLKE F+H+G IT + G+ + +GFV F + A +A+ + + L +
Sbjct: 299 RLKEAFSHYGPITSAKVMTDANGRSKG-FGFVCFTQPEQAARAVTEMNATLVGSKPLYVA 357
Query: 218 LAKPQADQK 226
LA+ + D++
Sbjct: 358 LAQRKEDRR 366
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 7/194 (3%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ E + ++IG V+S + +D N + G+ ++ + AE + +
Sbjct: 3 LYVGDLHPLATEALLYSKFSEIG-TVLSARICRDLATRN-SLGYGYVNFEEPKDAERALE 60
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ F S DP +S + +++KNL K I Q +L + F+ GKI
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKTIDQKQLYDTFSFIGKIL 116
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
I + G + YGFVHF + A +A++ I+ +V+ P +D+K++ G
Sbjct: 117 SCKIAMDEHGNSKG-YGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASG 175
Query: 231 SNSQKSALNPTYPP 244
+ +PP
Sbjct: 176 KLRFNNIYVKNFPP 189
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG++KGY FV + ++E A +AIE+LN L K++ KH +F+
Sbjct: 151 SGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFV 210
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + E+++RK + G + S+ ++KD ++R F F+ + N A + + ++
Sbjct: 211 KNLSESTLEEELRKIFGEFG-AITSVAVMKD--EDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
+KLD+ V A ++ E+ SQ LY+KNL I+ ++L
Sbjct: 268 G--YKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKL 325
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ +G IT + G + GFV F+ A +AL + + L +LA
Sbjct: 326 KELFSPYGTITSCKVMRDPSGVSKGS-GFVAFSNPEEASRALSEMNGKMVVSKPLYVALA 384
Query: 220 KPQADQK 226
+ + +++
Sbjct: 385 QRKEERR 391
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S + GY +V + + A++A+E LN L GK I+ + +FI N+
Sbjct: 64 SQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLD 123
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + + G ++S ++ D ++ Q++G+ F++Y + A+ + +K++
Sbjct: 124 KAIDHKALHDTFSAFG-NILSCKVAVD--SSGQSKGYGFVQYDSEEAAQKAIEKLNG--M 178
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
L+D V ++ A + + ++VKNL + ++ L+++F G IT V +
Sbjct: 179 LLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVM 238
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
+ G+ R +GFV+F A +A++ Y++D +
Sbjct: 239 KDEDGKSRC-FGFVNFENAEDAARAVEALNGYKLDNK 274
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 140/318 (44%), Gaps = 49/318 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRLFI 53
SG++KGY FV + ++E A AI++LN + K++ K + +++
Sbjct: 164 SGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYV 223
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + EDD+RK + G + S+ +++D +++ F F+ + N A + ++
Sbjct: 224 KNLSDSTSEDDLRKTFGEYGT-ITSVVVMRDAD--GKSKCFGFVNFENPEDAAKAVDALN 280
Query: 114 NPKFKLDDNAPTVSWADPRNA---------ESSAASQVKA-----LYVKNLPKDITQDRL 159
KF DD V A ++ E + QV LYVKNL I ++L
Sbjct: 281 GKKF--DDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKL 338
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ +G IT + G R GFV F+ A +AL I + L +LA
Sbjct: 339 KELFSEYGTITSCKVMRDPSGISRGS-GFVAFSTPEEASRALGEMNGKMIVSKPLYVALA 397
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA 278
+ + +++ +Q S + P PP +G M + GA G G Q + YG+ A
Sbjct: 398 QRKEERRAR--LQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMG-------QQLFYGQ-AP 447
Query: 279 PGGMAMLPMLLPDGRIGY 296
P M+ P GY
Sbjct: 448 PA------MIAPQAGFGY 459
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ ++ + + ++G V+S+ + +D + ++ G+ ++ Y N A +
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQ-VVSVRVCRD-LSTGRSLGYGYVNYSNQQDATRAID 99
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ +VS DP + +S A + +++KNL K I L E F+ G I
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGN----IFIKNLDKSIDIKALHETFSSFGTII 155
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
I GQ + YGFV + +A A+
Sbjct: 156 SCKIATDASGQSKG-YGFVQYDSEEAAQTAI 185
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AS+A+E LN ++ + I+ + K +FI N+ +
Sbjct: 100 GYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDN 159
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ L+D
Sbjct: 160 KALYETFSSFG-TILSCKVAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDK 214
Query: 123 APTVSW----ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V D +ES A +YVKNLPK+IT D LK+ F +G I+ V+ +
Sbjct: 215 QVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 274
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G RS +GFV+F +A A++ + VL A+ ++D++
Sbjct: 275 SGNSRS-FGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 321
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 52/311 (16%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KGY FV F +E A AI++LN L K++ + A + ++
Sbjct: 183 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 242
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+P+ +D+++K K G IS +V Q+ N +R F F+ + + A + +KM
Sbjct: 243 VKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 113 SNPKFKLDDNAPTVSWADP---------RNAESSAASQVKA-----LYVKNLPKDITQDR 158
+ L ++ V A R E S+ + LY+KNL + ++
Sbjct: 300 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+F+ +G +T + G R +GFV ++ A+ A+K I + L +L
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 219 AKPQADQKTSGGSNSQK----SALNPTYPPHLGY------GMVGGAY-----GALGAGYV 263
A+ + +++ S + ++P P G+ G + G + G G G V
Sbjct: 417 AQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLV 476
Query: 264 PAGFAQPMVYG 274
P +QPM YG
Sbjct: 477 P---SQPMGYG 484
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ R+
Sbjct: 151 GYAYVNFLKLADAQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDN 210
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + RG+AF+ + N A+ + ++M+ K D
Sbjct: 211 KTLYEHFSAFGK-ILSSKVMSDDQGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCR 265
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ + A++ +Y+KN D+ +RLKE+F+ +GK V +
Sbjct: 266 LFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSS 325
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ+L A+ +++++
Sbjct: 326 GKSKG-FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQ 371
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 42/239 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D ++GYAFV F+ + A +AIEE+N C L K +K + + + K F
Sbjct: 231 DDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNKANEFTN 290
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 291 VYIKNFGDDMDDERLKEVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 347
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQV--------------KALYVKNLPKDITQ 156
+M+ ++ V A ++ + QV LY+KNL I
Sbjct: 348 EMNGK--DINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDD 405
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++L F+ G I++V I + RS+ +G + F+ A KA+ E++G++L
Sbjct: 406 EKLWREFSSFGSISRVKIMRE---EGRSKGFGLICFSSPEEATKAMA-----EMNGRIL 456
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
+ K++ +A + L++G++ + ED + K + +GP V+SI + +D ++ G+A
Sbjct: 96 RSKEMNVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGP-VLSIRICRDLV-TRRSLGYA 153
Query: 96 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 155
++ + A A+ + M+ F P R+A S + +++KNL + I
Sbjct: 154 YVNFLKLADAQRALDTMN---FDTIKGKPIRLMWSQRDA-YLRKSGIGNVFIKNLDRSID 209
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L E F+ GKI + G SR Y FVHF + +A +A++ E++G +L
Sbjct: 210 NKTLYEHFSAFGKILSSKVMSDDQG---SRGYAFVHFQNQIAADRAIE-----EMNGALL 261
Query: 215 -DCSL 218
DC L
Sbjct: 262 KDCRL 266
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AS+A+E LN ++ + I+ + K +FI N+ +
Sbjct: 86 GYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDN 145
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ L+D
Sbjct: 146 KALYETFSSFG-TILSCKVAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDK 200
Query: 123 APTVSW----ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V D +ES A +YVKNLPK+IT D LK+ F +G I+ V+ +
Sbjct: 201 QVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 260
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G RS +GFV+F +A A++ + VL A+ ++D++
Sbjct: 261 SGNSRS-FGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 307
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 52/311 (16%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KGY FV F +E A AI++LN L K++ + A + ++
Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+P+ +D+++K K G IS +V Q+ N +R F F+ + + A + +KM
Sbjct: 229 VKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 285
Query: 113 SNPKFKLDDNAPTVSWADP---------RNAESSAASQVKA-----LYVKNLPKDITQDR 158
+ L ++ V A R E S+ + LY+KNL + ++
Sbjct: 286 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+F+ +G +T + G R +GFV ++ A+ A+K I + L +L
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 219 AKPQADQKTSGGSNSQK----SALNPTYPPHLGY------GMVGGAY-----GALGAGYV 263
A+ + +++ S + ++P P G+ G + G + G G G V
Sbjct: 403 AQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLV 462
Query: 264 PAGFAQPMVYG 274
P +QPM YG
Sbjct: 463 P---SQPMGYG 470
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 40/290 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-----------RLFI 53
++G +KGY FV + T+E A +AIE++N + GKK++ S K L++
Sbjct: 154 ENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRDPASVDVFTNLYV 213
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N P +W E+ +++ + K G + S+ + +D + R FAF+ + A+ + + ++
Sbjct: 214 RNFPVSWDEEALKQFLDKYGE-ITSMMIKED----GKGRKFAFVNFAEPEMAKEAVEALN 268
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKA-LYVKNLPKDITQDR 158
K + + + P + A + S AS+ + LY+KNL T +
Sbjct: 269 GTKLE-EGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSFTDES 327
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ELF G IT I G R +GFV F+ A KA+ + G+ L L
Sbjct: 328 LQELFGQFGSITSCKIMRDASGVSRG-FGFVCFSRPEEATKAIAGMHLKIVKGKPLYVGL 386
Query: 219 AKPQADQKTSGGSNSQKS----ALNPTYPPHLGYGMVG--GAYGALGAGY 262
A+ + +Q+ S S +S ++N P + +G+ G A G G G+
Sbjct: 387 AE-KKEQRLSRLQQSSRSRNGDSMNQGPIPSVLHGVPGYQDASGFYGQGF 435
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKG--KKIKCSAAQAKHR------LFIGNVPRNWGE 62
GYA+V + + + A A+E LN ++KG +I S R +F+ N+ R+
Sbjct: 73 GYAYVNYYSVQDAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDT 132
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLD 120
+ GP ++S ++ D ++G+ F+ Y A+ + +K++ K
Sbjct: 133 KAFYDTFSHFGP-ILSCKVAMDENGV--SKGYGFVHYDTEESAKEAIEKVNGMVIGGKKV 189
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+ +P + D + ++ LYV+N P ++ LK+ +G+IT ++I G
Sbjct: 190 EVSPFIKKQD---RDPASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKG 246
Query: 181 QERSRYGFVHFAE---RSSAMKALKNTEKYEIDGQVLDC 216
+ ++ FV+FAE A++AL T+ E +L C
Sbjct: 247 R---KFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVC 282
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AS+A+E LN ++ + I+ + K +FI N+ +
Sbjct: 86 GYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDN 145
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ L+D
Sbjct: 146 KALYETFSSFG-TILSCKVAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDK 200
Query: 123 APTVSW----ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V D +ES A +YVKNLPK+IT D LK+ F +G I+ V+ +
Sbjct: 201 QVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 260
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G RS +GFV+F +A A++ + VL A+ ++D++
Sbjct: 261 SGNSRS-FGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 307
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 52/311 (16%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KGY FV F +E A AI++LN L K++ + A + ++
Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+P+ +D+++K K G IS +V Q+ N +R F F+ + + A + +KM
Sbjct: 229 VKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 285
Query: 113 SNPKFKLDDNAPTVSWADP---------RNAESSAASQVKA-----LYVKNLPKDITQDR 158
+ L ++ V A R E S+ + LY+KNL + ++
Sbjct: 286 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+F+ +G +T + G R +GFV ++ A+ A+K I + L +L
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 219 AKPQADQKTSGGSNSQK----SALNPTYPPHLGY------GMVGGAY-----GALGAGYV 263
A+ + +++ S + ++P P G+ G + G + G G G V
Sbjct: 403 AQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLV 462
Query: 264 PAGFAQPMVYG 274
P +QPM YG
Sbjct: 463 P---SQPMGYG 470
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 35 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 94
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L
Sbjct: 95 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRK 67
KG+A + F T E +A+ EL + + GK+ I + Q L++ N+ ++W ++ +++
Sbjct: 235 KGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKE 294
Query: 68 AVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAP 124
+ G + L++D N N G AF+E+ +H+ ++ Y R + ++ F +D A
Sbjct: 295 KLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA- 353
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
VS+A+ + +QVK +++ LP +D ++ L +G + KV + PG R
Sbjct: 354 EVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARR 413
Query: 184 SRYGFVHFAERSSAMKA 200
YGFV F ++A++
Sbjct: 414 KNYGFVTFGTHAAAVEC 430
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
IK + Q + +F+G + + E D+RK +K+G + + + +PQ +N+GFA + +
Sbjct: 185 IKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGE-ITEVRMTVNPQ-TKRNKGFALLRF 242
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ + ++ NP T+ + LY+ N+ K ++ L
Sbjct: 243 ETVEHVKRALAELKNPVINGKQCGITI----------TTCQDSDTLYLDNICKSWKKEAL 292
Query: 160 KELFAHHG-KITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEI 209
KE H+G + K + E + G F+ F+ S + A K +K ++
Sbjct: 293 KEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDV 345
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGED 63
YA+V ++ +E A A++ L C++KGK+ + +Q +FI N+ +
Sbjct: 103 YAYVNYQKREEAEHALDTLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNK 162
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN- 122
+ + G ++S ++ D ++GF F+ Y + AE ++ + N L +N
Sbjct: 163 TLYDTFSTFGK-ILSCKIATDEHG--HSKGFGFVHYDD---AESAKAAIENVNGMLLNNM 216
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
AP + D + +YVKN ++T+D+L+E+F +GK+T +P
Sbjct: 217 EVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDN 276
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
G+ R +GFV+F + A KA+ + E++G
Sbjct: 277 EGKARG-FGFVNFEDHXEAAKAVDALNEKELEG 308
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 114/301 (37%), Gaps = 47/301 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKG----------KKIKCSAAQAKHRLFIG 54
+ G +KG+ FV + E A AIE +N L +K + S Q + F
Sbjct: 183 EHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTN 242
Query: 55 NVPRNWG----EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G ED +R+ G V S L D N + RGF F+ + +H A +
Sbjct: 243 VYVKNFGPEMTEDQLREMFEAYGK-VTSTYLPTD--NEGKARGFGFVNFEDHXEAAKAVD 299
Query: 111 KMSNPKF--------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ 156
++ + + + + W R S V L+VKNL I
Sbjct: 300 ALNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVN-LFVKNLDDTIDD 358
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
+LKE FA +GKIT + G+ R +GFV + + A +A+ + + G+ L
Sbjct: 359 TKLKEEFAPYGKITSAKVMTNDAGKSRG-FGFVCYTKPEEATRAINEMHQRMVMGKPLYV 417
Query: 217 SLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+LA Q+ N L V G G F PM YG+
Sbjct: 418 ALA-----QRKEVRHNQLSQQFQQRNQMRLQQAAVQGGMGQ---------FVAPMFYGQN 463
Query: 277 A 277
A
Sbjct: 464 A 464
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRK 67
KG+A + F T E +A+ EL + + GK+ I + Q L++ N+ ++W ++ +++
Sbjct: 235 KGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKE 294
Query: 68 AVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAP 124
+ G + L++D N N G AF+E+ +H+ ++ Y R + ++ F +D A
Sbjct: 295 KLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA- 353
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
VS+A+ + +QVK +++ LP +D ++ L +G + KV + PG R
Sbjct: 354 EVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARR 413
Query: 184 SRYGFVHFAERSSAMKA 200
YGFV F ++A++
Sbjct: 414 KNYGFVTFGTHAAAVEC 430
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
IK + Q + +F+G + + E D+RK +K+G + + + +PQ +N+GFA + +
Sbjct: 185 IKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGE-ITEVRMTVNPQ-TKRNKGFALLRF 242
Query: 100 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ + ++ NP T+ + LY+ N+ K ++ L
Sbjct: 243 ETVEHVKRALAELKNPVINGKQCGITI----------TTCQDSDTLYLDNICKSWKKEAL 292
Query: 160 KELFAHHG-KITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEI 209
KE H+G + K + E + G F+ F+ S + A K +K ++
Sbjct: 293 KEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDV 345
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 50/315 (15%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G AKGY FV F + E A+ AIE +N L KK+ K A +A ++
Sbjct: 191 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVY 250
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ E + + G + S+ LVKD QN ++ RGF F+ Y NH CA+ + ++
Sbjct: 251 IKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDEL 307
Query: 113 SNPKFKLDDNAPTVSWADPRNAESS----AASQVKA----------LYVKNLPKDITQDR 158
++ ++K V A ++ A Q+K L++KNL ++ +R
Sbjct: 308 NDKEYK--GKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 365
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LK F+ G IT I + G+ + +GFV + A KA+ + + G+ L +L
Sbjct: 366 LKAEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 424
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA 278
A+ + ++S L + + A G V G P++YG G
Sbjct: 425 AQRK---------EVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGY 475
Query: 279 P-------GGMAMLP 286
P GM M+P
Sbjct: 476 PIPAAVNGRGMPMVP 490
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +A++ELN +KG+ + +Q L FI N+
Sbjct: 108 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDN 167
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +G+ F+ + + A + + ++ L+D
Sbjct: 168 KALHDTFSAFGK-ILSCKVAVD--ELGNAKGYGFVHFDSVESANAAIEHVNG--MLLNDK 222
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S +KA +Y+KNL +IT+ +LF G+IT + + K
Sbjct: 223 KVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VK 280
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++ R +GFV++A A KA+ E G+ L
Sbjct: 281 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 317
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 2/199 (1%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
KG+AFV F A A ++L + ++KGK L + N+ +W +DD+ + +
Sbjct: 152 KGFAFVRFAEVWQARWAADDLRTAKIKGKACGICKNNDNETLHLRNICFDWSKDDLAENL 211
Query: 70 TKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVS 127
+ I L++ P +NRG+AF+++ +H A K+ L D +S
Sbjct: 212 KTFELENLEDINLIEHPDRKGKNRGYAFLDFSSHVDAVAGFLKLQKRDLYLGTDIKAQIS 271
Query: 128 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
+++ + + +VK++++ LP +D ++E F G+I + + +R +G
Sbjct: 272 FSNTISQDDKVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFG 331
Query: 188 FVHFAERSSAMKALKNTEK 206
F+ F R +A+ + K
Sbjct: 332 FISFTTRQAAIDCIDMVNK 350
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 98/245 (40%), Gaps = 23/245 (9%)
Query: 20 KELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79
KE+ +A + E +G++ K + ++ +F+ +P E+++ A+ + G V +
Sbjct: 85 KEVVEEAGMMAEAGEDEGRRKK----RKEYEVFVFGLPPEAVEENVAGALAEAGE-VEEV 139
Query: 80 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 139
LV+DP N+GFAF+ + A ++ + K K +
Sbjct: 140 RLVRDPAEPQLNKGFAFVRFAEVWQARWAADDLRTAKIK------------GKACGICKN 187
Query: 140 SQVKALYVKNLPKDITQD----RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 195
+ + L+++N+ D ++D LK + + ++ P + G+ R Y F+ F+
Sbjct: 188 NDNETLHLRNICFDWSKDDLAENLKTFELENLEDINLIEHPDRKGKNRG-YAFLDFSSHV 246
Query: 196 SAMKALKNTEKYEID-GQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGA 254
A+ +K ++ G + ++ + KS PPH V
Sbjct: 247 DAVAGFLKLQKRDLYLGTDIKAQISFSNTISQDDKVMEKVKSVFLDGLPPHWDEDDVREK 306
Query: 255 YGALG 259
+G G
Sbjct: 307 FGKFG 311
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 30/197 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+SG +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 185 ESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTN 244
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P +++ R+ K G V S L +D Q+ ++RGF F+ + NH A +
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFG-DVTSASLARD-QDTGKSRGFGFVNFINHEHAATAVD 302
Query: 111 KMSNPKFKLDD-------------NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
+++ FK D S+ R E ++ Q LYVKNL D+ +
Sbjct: 303 ELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAAR-IEKASKYQGVNLYVKNLDDDVDDE 361
Query: 158 RLKELFAHHGKITKVVI 174
+L+ELF G IT +
Sbjct: 362 KLRELFTPFGAITSAKV 378
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 17/216 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T +A+EELN +KG+ + +Q + +FI N+
Sbjct: 104 GYAYVNYNTTTDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDN 163
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A+ +G+ F+ Y A + + ++ L++
Sbjct: 164 KALHDTFAAFG-NILSCKVAQDESGAS--KGYGFVHYETDEAASQAIKHVNG--MLLNEK 218
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+P + T + +ELF G +T + +
Sbjct: 219 KVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQ 278
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV+F A A+ + GQ L
Sbjct: 279 DTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDL 314
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 25/107 (23%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR----------- 50
+ +D+G+++G+ FV F E A+ A++ELN + KG+ + AQ KH
Sbjct: 276 RDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEA 335
Query: 51 -------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L++ N+ + ++ +R+ T G + S ++++D
Sbjct: 336 ARIEKASKYQGVNLYVKNLDDDVDDEKLRELFTPFG-AITSAKVMRD 381
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 28/245 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 53
SG++KG+ FV F T+E A +AIE+LN L K++ S + +F+
Sbjct: 153 SGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFV 212
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D++ + GP + S+ +++D + +++ F F+ + N A S + ++
Sbjct: 213 KNLAETTSEEDLKNMFGEFGP-ITSVVVMRDGE--GKSKCFGFVNFENADDAARSVEALN 269
Query: 114 NPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
K K + S + E++ Q LYVKNL I D+LKE
Sbjct: 270 GKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKE 329
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
LF G IT + G R GFV F+ A +AL I + L +LA+
Sbjct: 330 LFTGFGTITSCKVMRDPNGISRGS-GFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQR 388
Query: 222 QADQK 226
+ D++
Sbjct: 389 KEDRR 393
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 13/197 (6%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D + ++ G+ ++ Y N A +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVG-QVVSVRVCRD-LTSRRSLGYGYVNYSNPVDASRALD 88
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + S DP +S + + +++KNL K I L + F+ G I
Sbjct: 89 VLNFTPLNGNPIRVMYSHRDPSVRKSGSGN----IFIKNLDKAIDHKALHDTFSAFGSIL 144
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKPQADQKTSG 229
+ GQ + +GFV F +A+KA++ + D QV + Q +
Sbjct: 145 SCKVATDSSGQSKG-FGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERE---- 199
Query: 230 GSNSQKSALNPTYPPHL 246
S S+K+ N + +L
Sbjct: 200 -SVSEKTKFNNVFVKNL 215
>gi|313227332|emb|CBY22478.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 79 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNA-ES 136
+E KD N NRGFAF+E+ +H A ++ + N L V WADP N +
Sbjct: 5 LESQKD--NGASNRGFAFVEFESHMDASTVKKNLLNRSLALFGRYYQNVDWADPENTPDD 62
Query: 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196
+ S VK LYVK + T++ +K LF +G + KV ++ + + FVHF ER S
Sbjct: 63 NVMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKV--------KKINNFSFVHFVERDS 114
Query: 197 AMKALK--NTEKYEIDGQVLDCSLAKP 221
A+KA++ N + + D +V+D SLAKP
Sbjct: 115 ALKAIEAMNGKNFGND-EVIDVSLAKP 140
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G ++G+ FV F E A +AI+ +N L G+++ K A+A
Sbjct: 165 EAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTN 224
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + G+++ + TK+GP + S L KD N + RGF F+ Y NH A + +
Sbjct: 225 VYVKNIHPDTGDEEFEEFFTKVGP-ITSAHLEKD--NEGKLRGFGFVNYENHNDAAKAVE 281
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
+++ FK V A ++ E Q L+VKNL I
Sbjct: 282 ELNETDFK--GQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDD 339
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
+L+E FA +G IT V + ++ G+ + +GFV F+ A KA+ + + G+ L
Sbjct: 340 QKLEEEFAPYGTITSVKVMRSENGKSKG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYV 398
Query: 217 SLAK 220
++A+
Sbjct: 399 AIAQ 402
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 14/220 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AIE+LN +KG + +Q +FI N+ +
Sbjct: 84 GYAYVNFNDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDN 143
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD- 121
+ + G ++S ++ D A +RGF F+ + + A+ + ++ +
Sbjct: 144 KALHDTFSVFG-NILSCKIATD--EAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEV 200
Query: 122 -NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
A VS D ++ A + +YVKN+ D + +E F G IT + G
Sbjct: 201 YVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEG 260
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
+ R +GFV++ + A KA++ + + GQ L A+
Sbjct: 261 KLRG-FGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQ 299
>gi|218195305|gb|EEC77732.1| hypothetical protein OsI_16837 [Oryza sativa Indica Group]
Length = 572
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 5/180 (2%)
Query: 34 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNR 92
E++GK+ + + LF+GN+ + W ++ +++ + G + LV+D N NR
Sbjct: 53 EVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNR 112
Query: 93 GFAFIEYYN--HACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKN 149
G+A +E+ A + R + + F +D +A VS+AD + +QV+ +++
Sbjct: 113 GYALLEFSTRPEAMDAFRRLQKRDVVFGVDRSA-KVSFADSYPEVDDEIMAQVRTVFIDG 171
Query: 150 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209
LP +DR+K+ +G I KV + P +R +GFV F +A+ EI
Sbjct: 172 LPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEI 231
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 131/313 (41%), Gaps = 46/313 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G AKGY FV F + E A+ AIE +N L KK+ K A +A ++
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVY 264
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ E + + G + S+ LVKD QN ++ RGF F+ Y NH CA+ + ++
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDEL 321
Query: 113 SNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ ++K + + E Q L++KNL ++ +RLK
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
F+ G IT I + G+ + +GFV + A KA+ + + G+ L +LA+
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP- 279
+ ++S L + + A G V G P++YG G P
Sbjct: 441 RK---------EVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPI 491
Query: 280 ------GGMAMLP 286
GM M+P
Sbjct: 492 PAAVNGRGMPMVP 504
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +A++ELN +KG+ + +Q L FI N+
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +G+ F+ + + A + + ++ L+D
Sbjct: 182 KALHDTFSAFG-KILSCKVAVD--ELGNAKGYGFVHFDSVESANAAIEHVNG--MLLNDK 236
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S +KA +Y+KNL +IT+ +LF G+IT + + K
Sbjct: 237 KVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VK 294
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++ R +GFV++A A KA+ E G+ L
Sbjct: 295 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 157/376 (41%), Gaps = 63/376 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 53
SGE++GY FV F E A AI++LN + KK+ S+ +++
Sbjct: 159 SGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYV 218
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ +D++++ K G + S +++D + ++R F F+ + N A + Q+++
Sbjct: 219 KNLSDTVTDDELKEMFGKYGT-ITSAVVMRD--SDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
F +D V A ++ E + Q LY+KNL ++I ++L
Sbjct: 276 GKIF--NDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKL 333
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ELFA +G IT + G R GFV F A +AL + + L +LA
Sbjct: 334 RELFAEYGNITSCKVMRDSNGVSRGS-GFVAFKSAEDANRALTEMNGKMVGSKPLYVALA 392
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGM------VGGAYGALGAGYVPAGFA---Q 269
+ + D+K +Q S + P P +G M V G L G P F Q
Sbjct: 393 QRKEDRKAK--LQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQQ 450
Query: 270 PMVYG-RGAAPGGMAMLPML-------LPDGRIGYVLQQP----GVQQHNPPPQPRSGRG 317
P++ G R P M+PM+ P GR +QQP G QQ P RG
Sbjct: 451 PLMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFP-------RG 503
Query: 318 GAGSSSSGGRRSTDNG 333
G G GR D G
Sbjct: 504 GRGYRYPTGRGMPDPG 519
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 25/223 (11%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNV 56
+S ++ GYA+V + + A++A+E LN + GK I+ S +FI N+
Sbjct: 71 NSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNL 130
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
++ + G ++S ++ DP + ++RG+ F+++ A+ + K++
Sbjct: 131 DKSIDNKALYDTFCAFG-NILSCKIATDP--SGESRGYGFVQFEKDESAQSAIDKLNG-- 185
Query: 117 FKLDDN----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
++D P V D N S+ + +YVKNL +T D LKE+F +G IT
Sbjct: 186 MLINDKKVFVGPFVRKQDRENVSSNI--KFSNVYVKNLSDTVTDDELKEMFGKYGTITSA 243
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
V+ G+ R +GFV+F +A +A++ E++G++ +
Sbjct: 244 VVMRDSDGKSRC-FGFVNFENADAAAQAVQ-----ELNGKIFN 280
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 106 GYAYVNYNSTQDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 165
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 166 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEK 220
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+ ++T++ +ELFA +G++T +
Sbjct: 221 KVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDN 280
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F +SA KA++ E GQ L
Sbjct: 281 EGKSRG-FGFVNFTTHASAAKAVEELNGKEFRGQEL 315
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 151/388 (38%), Gaps = 93/388 (23%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+QAI+ +N L KK+ K +A
Sbjct: 187 ENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 246
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ E++ R+ K G V S L +D N ++RGF F+ + HA A + +
Sbjct: 247 VYVKNINHEVTEEEFRELFAKYGE-VTSSSLARD--NEGKSRGFGFVNFTTHASAAKAVE 303
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ +F K + + E + Q LY+KNL D+ D+
Sbjct: 304 ELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDK 363
Query: 159 LKELFAHHGKITKVVI----PPAKP-GQERSR---------------------------- 185
L+++F+ G IT + PP P G E +
Sbjct: 364 LRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKV 423
Query: 186 ---------YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 236
+GFV F+ A KA+ + +DG+ L +LA+ + + +KS
Sbjct: 424 ERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRK---------DVRKS 474
Query: 237 ALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQ-PMVYGRGAAPGGMAMLP-----MLLP 290
L + M A A +P + Q P+ Y G PG LP M P
Sbjct: 475 QLEASIQARNQLRMQQAAAQA----GLPQQYMQAPVYYAPGQQPG---FLPPGGRGMPFP 527
Query: 291 DGRIGYVLQQPGVQQHNPPPQPRSGRGG 318
G IG Q G PP + GRGG
Sbjct: 528 QGGIGMPAVQGGRPGQFPPYAQQGGRGG 555
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 61 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAVT-RRSLGYAYVNYNSTQDG 118
Query: 106 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 119 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 171
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 172 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 230
Query: 223 ADQKT 227
D+++
Sbjct: 231 KDRQS 235
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 35/270 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC---------SAAQAKHR---LFI 53
SG++KGY FV F +E A +AIE+LN L K++ +A K R +++
Sbjct: 148 SGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYV 207
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D++KA + G + S +++D + + F F+ + N A + + ++
Sbjct: 208 KNLSETTTEEDLKKAFGEYGT-ITSAVVMRD--GDGKTKCFGFVNFENADDAATAVEALN 264
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A +N E++ Q LY+KNL I DRL
Sbjct: 265 GKKF--DDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRL 322
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
K+LF+ G IT + G R GFV F+ A KAL + + L +LA
Sbjct: 323 KQLFSPFGTITSCKVMRDPNGISRGS-GFVAFSTPEEASKALMEMNGKMVVSKPLYVALA 381
Query: 220 KPQADQKT---SGGSNSQKSALNPTYPPHL 246
+ + D++ + S + A+ P+ P +
Sbjct: 382 QRKEDRRARLQAQFSQIRPVAMAPSVAPRM 411
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + + A++A++ LN L G I+ + HR +FI N+ +
Sbjct: 66 GYGYVNYSSPQDAARALDMLNFTPLNGSPIRIMYS---HRDPSVRKSGSGNIFIKNLDKG 122
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q++G+ F+++ N A+ + +K++ L
Sbjct: 123 IDHKALHDTFSAFG-NILSCKVATD--SSGQSKGYGFVQFDNEESAQKAIEKLNG--MLL 177
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V + SA + + +YVKNL + T++ LK+ F +G IT V+
Sbjct: 178 NDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRD 237
Query: 178 KPGQERSRYGFVHFAERSSAMKALK--NTEKYE 208
G+ + +GFV+F A A++ N +K++
Sbjct: 238 GDGKTKC-FGFVNFENADDAATAVEALNGKKFD 269
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D ++ G+ Y N++ + + +
Sbjct: 26 LYVGDLEANVTDSHLYDLFNQVGQ-VVSVRVCRD-LTTRRSLGYG---YVNYSSPQDAAR 80
Query: 111 KMSNPKFKLDDNAPT---VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
+ F + +P S DP +S + + +++KNL K I L + F+ G
Sbjct: 81 ALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGN----IFIKNLDKGIDHKALHDTFSAFG 136
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + GQ + YGFV F SA KA++ +++G +L+
Sbjct: 137 NILSCKVATDSSGQSKG-YGFVQFDNEESAQKAIE-----KLNGMLLN 178
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRK 67
KG+A + F T E +A+ EL + + GK+ I + Q L++ N+ ++W ++ +++
Sbjct: 235 KGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKE 294
Query: 68 AVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAP 124
+ G + L++D N N G AF+E+ +H+ ++ Y R + ++ F +D A
Sbjct: 295 KLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA- 353
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
VS+A+ + +QVK +++ LP +D ++ L +G + KV + PG R
Sbjct: 354 EVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARR 413
Query: 184 SRYGFVHFAERSSAMKA 200
YGFV F ++A++
Sbjct: 414 KNYGFVTFGTHAAAVEC 430
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
IK + Q + +F+G + + E D+RK +K+G + + + +PQ +N+GFA + +
Sbjct: 185 IKETQKQKELEVFVGGLDKEATEHDLRKVFSKVG-EITEVRMTVNPQ-TKRNKGFALLRF 242
Query: 100 YNHACAEYSRQKMSNP 115
+ + ++ NP
Sbjct: 243 ETVEHVKRALAELKNP 258
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 58/349 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAK-HRLF 52
D G++KG+ FV + +E A A++ LN + K + S +AK + +F
Sbjct: 46 DIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVF 105
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + +DD+ K + G G I+ +V + ++R F F+ + + A + +++
Sbjct: 106 VKNLSESTTKDDLVKVFS--GYGTITSAVVMIGMDG-KSRCFDFVNFESPDDAARAVEEL 162
Query: 113 SNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDR 158
+ K ++D V A ++ +++ Q + LY+KNL IT D+
Sbjct: 163 NGKK--INDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQ 220
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ELF++ GKIT I + G + GFV F+ R A +AL I G+ L +
Sbjct: 221 LRELFSNFGKITSCKIMRDQNGVSKGS-GFVSFSTREEASQALTEMNGKMISGKPLYVAF 279
Query: 219 AKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYGALGA 260
A+ + D+K +Q S + P YPP L YG A
Sbjct: 280 AQRKEDRKAM--LQAQFSQMRPVPMTPSMTPRLPMYPPMPTLGQQLFYGQAPPAMMPPQP 337
Query: 261 GYVPAGFAQPMVYGRGAAPGGMAMLP-MLLPDGRIGYVLQQPGVQQHNP 308
GY GF Q +V G PGG A +P +P + G +PG++++ P
Sbjct: 338 GY---GFQQQLV--PGMRPGGGAHMPNYFVPVVQPGQQGPRPGIRRNGP 381
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 53
SG++KG+ FV F T+E A +AIE+LN L K++ S + +F+
Sbjct: 153 SGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFV 212
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D++ + GP + S+ +++D + +++ F F+ + N A S + ++
Sbjct: 213 KNLAETTSEEDLKNMFGEFGP-ITSVVVMRDGE--GKSKCFGFVNFENADDAARSVEALN 269
Query: 114 NPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
K K + S + E++ Q LYVKNL I D+LKE
Sbjct: 270 GKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKE 329
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
LF G IT + G R GFV F+ A +AL I + L +LA+
Sbjct: 330 LFTGFGTITSCKVMRDPNGISRGS-GFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQR 388
Query: 222 QADQ 225
+ D+
Sbjct: 389 KEDR 392
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 13/197 (6%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D + ++ G+ ++ Y N A +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVG-QVVSVRVCRD-LTSRRSLGYGYVNYSNPVDASRALD 88
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ + S DP +S + + +++KNL K I L + F+ G I
Sbjct: 89 VLNFTPLNGNPIRVMYSHRDPSVRKSGSGN----IFIKNLDKAIDHKALHDTFSAFGSIL 144
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKPQADQKTSG 229
+ GQ + +GFV F +A+KA++ + D QV + Q +
Sbjct: 145 SCKVATDSSGQSKG-FGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERE---- 199
Query: 230 GSNSQKSALNPTYPPHL 246
S S+K+ N + +L
Sbjct: 200 -SVSEKTKFNNVFVKNL 215
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+SG +KGY FV + T E A+QAI+ +N L KK+ K +A
Sbjct: 184 ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTN 243
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P E++ R+ K G V S L +D + ++RGF F+ + NH A +
Sbjct: 244 IYVKNIPVEATEEEFRELFEKFG-DVTSASLARDAETG-KSRGFGFVNFINHEHAATAVD 301
Query: 111 KMSNPKFKLDD-------------NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
+++ FK D S+ R E ++ Q LYVKNL DI +
Sbjct: 302 ELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAAR-IEKASKYQGVNLYVKNLDDDIDDE 360
Query: 158 RLKELFAHHGKITKVVI 174
+L+ELF G IT +
Sbjct: 361 KLRELFQSFGSITSAKV 377
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 19/217 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T +A+EELN +KG+ + +Q + +FI N+
Sbjct: 103 GYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDN 162
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A+ +G+ F+ Y A + + ++ L++
Sbjct: 163 KALHDTFAAFG-NILSCKVAQDESGAS--KGYGFVHYETDEAAAQAIKHVNG--MLLNEK 217
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PA 177
V P+ S ++KA +YVKN+P + T++ +ELF G +T + A
Sbjct: 218 KVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDA 277
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G+ R +GFV+F A A+ + GQ L
Sbjct: 278 ETGKSRG-FGFVNFINHEHAATAVDELNGKDFKGQDL 313
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 32/241 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI---------KCSAAQAKH--RLFIG 54
+G +KG VT+ T+E A AI LN EL G+KI SA + K R+++G
Sbjct: 124 NGRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVREDREAQPVSAVKPKRGFRVYVG 183
Query: 55 NVPRN--WGE--DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
N+ N W E D M+KA T V+ +++++P +++G +EY A +
Sbjct: 184 NLSWNVKWQELKDHMKKAGT-----VVHADVLEEPN--GRSKGCGLVEYATQEEAAKAIA 236
Query: 111 KMSNPK------FKLDDNAP---TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
+++N + F +D P ++S R A + + + LYV NLP + +LK+
Sbjct: 237 ELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKD 296
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
LF G + + I G+ R +G + + + A +A++ EI+G++++ L K
Sbjct: 297 LFRTVGDVERADIAEYPDGRSRG-FGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 355
Query: 222 Q 222
+
Sbjct: 356 E 356
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 87 GYAYVNYLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDN 146
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D Q +++G+ F+ Y AE + + ++ L+D
Sbjct: 147 KALHDTFVAFG-NVLSCKVATDEQG--RSKGYGFVHYETAEAAETAIKAVNG--MLLNDK 201
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR S ++KA LY+KNL ++TQ+ +ELF +G +T ++
Sbjct: 202 KVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDD 261
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV++ A A+ N ++ G+ L + A+ +A+++
Sbjct: 262 EGRSKG-FGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAERE 308
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E A AI+ +N L KK+ K +A+
Sbjct: 168 EQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTN 227
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L+I N+ +++ + + G +I V D +++GF F+ Y +H A+ +
Sbjct: 228 LYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDD---EGRSKGFGFVNYESHEEAQAAVD 284
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA------------LYVKNLPKDITQDR 158
+ + K T + E S +A LYVKNL D+ D+
Sbjct: 285 NLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDK 344
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + + G + +GFV F+ A KA+ I + L SL
Sbjct: 345 LRAEFEPFGTITSCKVMSDEKGSSKG-FGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSL 403
Query: 219 AK 220
A+
Sbjct: 404 AQ 405
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +G+ FVT++T+ + A++ +N+ E+ KG+ + + RLF+G +P++ D+
Sbjct: 112 NGNNRGFCFVTYQTRNESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDE 171
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + ++NRGF+F+EY +H A +R+K+ + +L +
Sbjct: 172 IMEEMKKVTEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQI 231
Query: 125 TVSWADP 131
V WA+P
Sbjct: 232 AVDWAEP 238
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ + GP V + ++ D N N NRGF F+ Y ++ + +
Sbjct: 78 IFIGKLPRDLFEDELYPVLESYGP-VFELRMMLD-FNGN-NRGFCFVTYQTRNESQAALK 134
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGK 168
++N F++ + N L+V +PK +D + E G
Sbjct: 135 GINN--FEIRKGRLLGACQSVDNCR---------LFVGGIPKSKKRDEIMEEMKKVTEGV 183
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQADQK 226
+ +V P A + + FV + + +A A + + ++ G + A+P+ + +
Sbjct: 184 VDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEPEIEVE 243
Query: 227 TS 228
S
Sbjct: 244 ES 245
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG +KG+ FV F ++E A +AI++LN L K++ K +F+
Sbjct: 154 SGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFV 213
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D+ + + GP + S+ +++D +++ F F+ + N A S + ++
Sbjct: 214 KNISEGMTEEDLTRIFGEFGP-ITSVVVMRD--GDGKSKCFGFVNFENVDDAAMSVEALN 270
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E+ Q LY+KNL I D+L
Sbjct: 271 GQKF--DDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKL 328
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELFA G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 329 KELFAQFGTITSCKVMRDPNGLSRGS-GFVAFSSPEEASRALAEMNSKMVVSKPLYVALA 387
Query: 220 KPQADQK 226
+ + D++
Sbjct: 388 QRKEDRR 394
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + A++A++ LN L GK I+ + HR +FI N+ +
Sbjct: 72 GYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYS---HRDPSIRKSGTGNIFIKNLDKG 128
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D + ++G F+++ + A+ + K++ L
Sbjct: 129 IDHKALHDTFSAFG-NILSCKVATDA--SGMSKGHGFVQFDSEEAAQKAIDKLNG--MLL 183
Query: 120 DDNAPTVS-WADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V + + ES+ + ++VKN+ + +T++ L +F G IT VV+
Sbjct: 184 NDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVV--M 241
Query: 178 KPGQERSR-YGFVHFAERSSAMKALK--NTEKYE 208
+ G +S+ +GFV+F A +++ N +K++
Sbjct: 242 RDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFD 275
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 30/197 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+SG +KGY FV + T E A+QAI+ +N L KK+ K +A
Sbjct: 184 ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTN 243
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P E++ R+ K G V S L +D ++ ++RGF F+ + NH A +
Sbjct: 244 IYVKNIPVEATEEEFRELFEKFG-DVTSASLARDTESG-KSRGFGFVNFINHEHAATAVD 301
Query: 111 KMSNPKFKLDD-------------NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
+++ FK D S+ R ++S V LYVKNL +I +
Sbjct: 302 ELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVN-LYVKNLDDEIDDE 360
Query: 158 RLKELFAHHGKITKVVI 174
+L+ELFA G IT +
Sbjct: 361 KLRELFAPFGAITSAKV 377
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 17/216 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T +A+EELN +KG+ + +Q + +FI N+
Sbjct: 103 GYAYVNYNTTVDGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDN 162
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A+ +G+ F+ Y A + + ++ L++
Sbjct: 163 KALHDTFAAFG-NILSCKVAQDESGAS--KGYGFVHYETDEAAAQAIKHVNG--MLLNEK 217
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+P + T++ +ELF G +T +
Sbjct: 218 KVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDT 277
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV+F A A+ + GQ L
Sbjct: 278 ESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDL 313
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC---------SAAQAKHR---LFI 53
SG++KGY FV + + E A +AIE+LN L K++ A K R +F+
Sbjct: 151 SGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFV 210
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + E+++RK + G + S+ ++KD ++R F F+ + N A + + ++
Sbjct: 211 KNLSESTLEEELRKIFGEFGT-ITSVAVMKD--EDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
+KLD+ V A ++ E+ SQ LY+KNL I+ D+L
Sbjct: 268 G--YKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKL 325
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ +G IT + G + GFV F+ A +AL + + L +LA
Sbjct: 326 KELFSPYGTITSCKVMRDPSGVSKGS-GFVAFSTPEEASRALSEMNGKMVVSKPLYVALA 384
Query: 220 KPQADQK 226
+ + +++
Sbjct: 385 QRKEERR 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 103/217 (47%), Gaps = 16/217 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S + GY +V + + A++A+E LN L GK I+ + +FI N+
Sbjct: 64 SQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLD 123
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + + G ++S ++ D ++ Q++G+ F++Y + A+ + +K++
Sbjct: 124 KAIDHKALHDTFSAFG-NILSCKVAVD--SSGQSKGYGFVQYDSDEAAQKAIEKLNG--M 178
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
L+D V + A + + ++VKNL + ++ L+++F G IT V +
Sbjct: 179 LLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVM 238
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
+ G+ R +GFV+F A +A++ Y++D +
Sbjct: 239 KDEDGKSRC-FGFVNFENAEDAARAVEALNGYKLDNK 274
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + RG+AF+ + N A+ + ++M+ K D
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCR 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ + A++ +Y+KN D+ +RLKE+F+ +GK V +
Sbjct: 167 LFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ+L A+ +A+++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 42/239 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D ++GYAFV F+ + A +AIEE+N C L K +K + + Q K F
Sbjct: 132 DDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEFTN 191
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S+++++D + +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGDDMDDERLKEVFSKYGK-TLSVKVMRDS--SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K + A + E Q LY+KNL + I ++
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V K QE R +G + F+ A KA+ E++G++L
Sbjct: 309 LRREFSSFGSISRV-----KVMQEEGRSKGFGLICFSSPEEATKAMT-----EMNGRIL 357
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVP 57
S ++ GYA+V F++ +A+EELN +KGK + +Q L FI N+
Sbjct: 84 SKQSLGYAYVNFQSHADGEKALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLH 143
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + G ++S ++ D +N N ++GF F+ Y A+ + + ++
Sbjct: 144 PAIDNKTLHDTFSAFGK-ILSCKIATD-ENGN-SKGFGFVHYEESESAKAAIENVNG--M 198
Query: 118 KLDDN----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+D+ P ++ D ++ + +YVKN+ + +D+L+E F+ G I+ +
Sbjct: 199 LLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIF 258
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ + G+ R +GFV+F + A+KA++ +IDGQ L A+ ++++ S
Sbjct: 259 LSKDESGKSRG-FGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMES 312
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 57/341 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------R 50
++G +KG+ FV + E A AIE +N L ++ AK
Sbjct: 170 ENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTN 229
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ NW ED +R+ + G + SI L KD + ++RGF F+ + H A + +
Sbjct: 230 VYVKNINLNWDEDKLRETFSPFGT-ISSIFLSKD--ESGKSRGFGFVNFEKHEDAVKAVE 286
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA-------ESSAASQVKA-------LYVKNLPKDITQ 156
+++N +D V A ++ + AA Q + L+VKNL I
Sbjct: 287 ELNNK--DIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDD 344
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
+L+E F +G IT + G+ + +GFV ++ A KA+ + + G+ L
Sbjct: 345 AKLEEEFKPYGTITSAKVMLDDAGKSKG-FGFVCYSSPEEATKAITEMHQRMVAGKPLYV 403
Query: 217 SLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+LA+ + +++ + Q A N A G +G F PM YG+
Sbjct: 404 ALAQRKEVRRSQ--LSQQIQARNQMRMQQ------AAAQGGMGQ------FVAPMFYGQN 449
Query: 277 AAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG 317
P LP G G PG Q PR G+G
Sbjct: 450 ---------PGFLPPGARGAPFAAPGQQMMMQQGMPRPGQG 481
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 142/346 (41%), Gaps = 45/346 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
+GE+KGY FV + E A AIE+LN + KK+ K +++
Sbjct: 156 AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYV 215
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ EDD+++ K G + S+ +++D +++ F F+ + + A + Q ++
Sbjct: 216 KNLAETTTEDDLKEIFGKFG-AITSVVVMRD--GDGRSKCFGFVNFESPDEAALAVQDLN 272
Query: 114 NPKF-----------KLDDNAPTVSWADPRNAESSAAS-QVKALYVKNLPKDITQDRLKE 161
KF K + + +N + +A Q LY+KNL + ++L+E
Sbjct: 273 GKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 332
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
LFA G IT + G R GFV F A +AL + + L +LA+
Sbjct: 333 LFAEFGTITSCKVMRDSNGASRGS-GFVAFKSADDASRALAEMNNKMVGNKPLYVALAQR 391
Query: 222 QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA--- 278
+ D+K +Q S + P VG L G VP G Q M YG+ A
Sbjct: 392 KEDRKAR--LQAQFSQMRPVPMAQ----TVGPRMQMLPPG-VPVG--QQMFYGQPPAFIN 442
Query: 279 --PG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 319
PG +P + P G P VQQ P +P R GA
Sbjct: 443 PQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGA 488
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S ++ GYA+V + T A++A+E LN + G+ I+ + +FI N+
Sbjct: 69 SRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLD 128
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
++ + G ++S ++ DP A +++G+ F++Y A + +K++
Sbjct: 129 KSIDNKALYDTFCVFG-NILSCKVATDP--AGESKGYGFVQYERDEAAHAAIEKLNG--M 183
Query: 118 KLDDNAPTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
++D V + ++ VK +YVKNL + T+D LKE+F G IT VV+
Sbjct: 184 LMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVV- 242
Query: 176 PAKPGQERSR-YGFVHFAERSSAMKALKN 203
+ G RS+ +GFV+F A A+++
Sbjct: 243 -MRDGDGRSKCFGFVNFESPDEAALAVQD 270
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 40/238 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKHR------- 50
SG +KGY FV F A+ A+ ELN C ++G+KI + A +R
Sbjct: 460 SGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDM 519
Query: 51 --LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
L++ N+P + + + + G I+ +V + N N ++G+ F+++ + CA +
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGR--ITHAMVVEQSN-NSSKGYGFVKFADSHCAAEA 576
Query: 109 RQKMSNPKFK----------LDDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQ 156
M+ + L + + ++E +A+ ++ LYV NLP+ ++
Sbjct: 577 VAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSA 636
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
D+L LF G+I +VV+ + Y FV +A+ +SA KALK+ + Y I+G+ L
Sbjct: 637 DKLVSLFMPFGQIDRVVM--------YAEYSFVLYADINSAAKALKHMDGYLIEGKRL 686
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 32/248 (12%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA--------------- 45
M+ +G +KGY FV + + A+ AI +LN ++GKK++ A
Sbjct: 351 MRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAIS 410
Query: 46 QAKHRL---------FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 96
+ H+L ++ N+P D + G V S ++ D + ++G+ F
Sbjct: 411 ETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGK-VTSAKVAMD-YTSGISKGYGF 468
Query: 97 IEYYN-----HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 151
+++ + HA E + + K + P+ N + + LYV N+P
Sbjct: 469 VKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIP 528
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
+ + +L ELF G+IT ++ + YGFV FA+ A +A+ I+G
Sbjct: 529 SSMNKAKLVELFLPFGRITHAMVVEQSNNSSKG-YGFVKFADSHCAAEAVAMMNGALIEG 587
Query: 212 QVLDCSLA 219
+ + +A
Sbjct: 588 ETISVRVA 595
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----------KHRLFIGN 55
+G +KGY FV + A++AI+ +N ++G+ ++ A A +L++ N
Sbjct: 266 TGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCN 325
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-----HACAEYSRQ 110
+P ED + G V S+++++D ++G+ F+ Y + HA + +
Sbjct: 326 LPLLLHEDKLHDLFVPYGQ-VTSVKVMRD-HATGLSKGYGFVRYSDPQHAAHAIFQLNGH 383
Query: 111 KMSNPKFKL----------DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
+ K ++ + + +S D + + S V YV+NLP + D+L
Sbjct: 384 LIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNV---YVQNLPLLMNTDKLL 440
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
LF +GK+T + YGFV F++ A A+ ++G+
Sbjct: 441 NLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGR 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
LF+GN+P + + + G V S V D ++G+ F++Y + A + +
Sbjct: 231 LFVGNLPPSLASHKLIELFLPFGRIVKS--RVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
M+ ++ V A ++ S+ + LYV NLP + +D+L +LF +G++T
Sbjct: 289 HMNGRM--VEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVT 346
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
V + YGFV +++ A A+ + I+G+ ++ +A +S G
Sbjct: 347 SVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAV-----SSSG 401
Query: 231 SNSQKSALNPT 241
SN+ A++ T
Sbjct: 402 SNTSVQAISET 412
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
LYV LP +T D+L ELF G+IT+ + K +GFV FA+ SA A+ +
Sbjct: 816 LYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHM 875
Query: 205 EKYEIDGQVL 214
Y +DG +L
Sbjct: 876 NGYPLDGHML 885
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------- 49
+KGY FV F A++A+ +N ++G+ I A
Sbjct: 559 SKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASP 618
Query: 50 -----RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 104
RL++ N+P+ D + G I+ V ++F+ Y +
Sbjct: 619 EINNCRLYVTNLPQTMSADKLVSLFMPFG----QIDRVV------MYAEYSFVLYADINS 668
Query: 105 AEYSRQKMSNPKFKLDDNAPTVSWADPR--NAESSAASQ----------VKALYVKNLPK 152
A + + M + ++ V ++P NA SA SQ + LYV +P
Sbjct: 669 AAKALKHMDG--YLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPS 726
Query: 153 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
+T ++L ++F +G+I + + + YG + +A SSA A+ + + Y+I G
Sbjct: 727 AVTCEQLVQIFCLYGEIVQA-------KKFDAGYGMIRYANASSAAAAIDHLDGYQIGGS 779
Query: 213 VLDCSLA 219
L +A
Sbjct: 780 TLVVRVA 786
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 39/295 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS-----------AAQAKH-RLFIG 54
G++KGY FV F ++E A+ AIE+LN + K+I AK+ L+I
Sbjct: 137 GKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIK 196
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + E +++ + G +IS+ + KD ++GFAF+ Y N A + + M+
Sbjct: 197 NLDSDITEALLQEKFSSFGK-IISLVISKDDNGL--SKGFAFVNYENPDDARKAMEAMNG 253
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
KF K + + + E Q LYVKN+ D+T L++L
Sbjct: 254 LKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDL 313
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F+ G IT V + G + +GFV F+ A KA+++ + L ++A+ +
Sbjct: 314 FSSCGTITSVKVMRDDKGISKG-FGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRK 372
Query: 223 ADQKT----------SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGF 267
D+KT +G S + +PP+ Y V G Y P G
Sbjct: 373 MDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYF-YHSVASQMFQSGLLYQPLGL 426
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%)
Query: 136 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 195
++ A+ +LYV +L ++ L E FA + V + + + YG+V+F +
Sbjct: 5 ATVAAVPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQ 64
Query: 196 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN 232
A++A+K ++G+V+ + P + SG N
Sbjct: 65 DAIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGN 101
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 76/373 (20%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEEL------NSCELKG------KKIKCSAAQAKHRLF 52
DS +GYAF F + A + L N+ + KKI+ + KH LF
Sbjct: 142 DSMRNRGYAFARFGNRGECEDAFQFLSENDGANAVMIDAENNNEEKKIRATIKPTKHVLF 201
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN--------ANQNRGFAFIEYYNHAC 104
+ P +D+ + ++G IE V P+ A +++G+ FI+Y+N C
Sbjct: 202 MSGFPPFATREDIVTELLRVGGA--GIETVSLPRASGTGTNGIACRHKGYGFIDYFNQEC 259
Query: 105 AEYSRQKMSNPKFKL---DDNAPTVS-WADPRN----AESSAASQVKALYVKNLP----- 151
AE + + +++ ++ + N P V+ WAD ++ +Q K++YV +P
Sbjct: 260 AERAMKNINDKTTRMFNGNANKPVVAKWADVSKEKPPSKEDLLAQSKSVYVGQIPTEGVA 319
Query: 152 ---KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS------------- 195
KD+ + +L+E+F G++ V +P G Y FVHF ERS
Sbjct: 320 LDEKDL-EGKLREVFGQFGEVESVKLPR---GDATKGYAFVHFTERSSAEKAVEAAAASA 375
Query: 196 -------SAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY 248
SAM + ++ G L +A+P+ ++ P
Sbjct: 376 SGARGDESAMDGVVAAGAVQLQGCNLTVEIARPERERNNEHRDKGGPRGGRGGRRPMHRG 435
Query: 249 GMVGGAYGALGAGYVPAGFAQPMVYGRGAAP----GGMAMLPMLLPDGRIGYVLQQPGVQ 304
G G Y + P +G G AP GG +M P+ LP+G+ YV+ Q +
Sbjct: 436 GRGEPPGSRRGGDY--NNYMSP--HGGGIAPRQFGGGNSMTPVYLPNGQTAYVMGQGNM- 490
Query: 305 QHNPPPQPRSGRG 317
P P +G G
Sbjct: 491 -----PAPNAGWG 498
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 46 QAKHRLFIGNVPRNWGEDDMR-----------KAVTKIGPGVISIELVKDPQNANQNRGF 94
Q LF+G VP++ + D+ K TK + I++VKDP ++ +NRG+
Sbjct: 90 QHGSELFLGGVPKSASDQDVENLFKGSTKGRGKGNTKCPSQPVDIQVVKDPNDSMRNRGY 149
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW-ADPRNAESSAASQVK----ALYVKN 149
AF + N E + Q +S +D A V A+ N E + +K L++
Sbjct: 150 AFARFGNRGECEDAFQFLSE-----NDGANAVMIDAENNNEEKKIRATIKPTKHVLFMSG 204
Query: 150 LPKDIT-QDRLKELFAHHGKITKVVIPPAKPGQ-------ERSRYGFVHFAERSSAMKAL 201
P T +D + EL G + V P G YGF+ + + A +A+
Sbjct: 205 FPPFATREDIVTELLRVGGAGIETVSLPRASGTGTNGIACRHKGYGFIDYFNQECAERAM 264
Query: 202 KN 203
KN
Sbjct: 265 KN 266
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +K + + +Q + +FI N+
Sbjct: 91 GYAYVNYLNAADGERALEQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDN 150
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D +++G+ F+ Y AE + + ++ L+D
Sbjct: 151 KALHDTFAAFG-TVLSCKVATD--ETGRSKGYGFVHYETAEAAENAIKAVNG--MLLNDK 205
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S +++A LYVKNL ++TQD ELF +G +T VI +
Sbjct: 206 KVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDE 265
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV+F A KA+ +E+ G+ L S A+ +A+++
Sbjct: 266 EGKSKG-FGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAERE 312
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 40/247 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A AI+ +N L KK+ K +A+
Sbjct: 172 ETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTN 231
Query: 51 LFIGNVPRNWGEDDMRKAVTKIG---PGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107
L++ N+ +D+ + K G VIS++ +++GF F+ + H A+
Sbjct: 232 LYVKNLDPEVTQDEFIELFKKYGNVTSAVISVD------EEGKSKGFGFVNFETHDEAQK 285
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKD 153
+ ++++ F+L VS A + E + Q LY+KNL D
Sbjct: 286 AVDELND--FELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDD 343
Query: 154 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
+ D+L+ F G IT + + GQ + +GFV F+ A KA+ I +
Sbjct: 344 VDDDKLRAEFEPFGTITSCKVMRDEKGQSKG-FGFVCFSSPDEATKAVAEMNNKMIGTKP 402
Query: 214 LDCSLAK 220
L SLA+
Sbjct: 403 LYVSLAQ 409
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AS+A++ LN ++ + I+ + K +FI N+ +
Sbjct: 99 GYAYVNFANPEDASRAMDSLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDN 158
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ L+D
Sbjct: 159 KALYETFSAFG-TILSCKVAMD--AVGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDK 213
Query: 123 APTVSW----ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V D +ES A + +YVKNLPK+IT D LK+ F +G I+ V+ +
Sbjct: 214 QVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 273
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G RS +GFV+F +A A++ + VL A+ +++++
Sbjct: 274 SGNSRS-FGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRAQKKSERE 320
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KGY FV F +E A AI++LN L K++ + A ++
Sbjct: 182 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVY 241
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+P+ +D+++K K G IS +V Q+ N +R F F+ + + A + +KM
Sbjct: 242 VKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGN-SRSFGFVNFESPEAAAVAVEKM 298
Query: 113 SNPKFKLDDNAPTVSWADP---------RNAESSAASQVKA-----LYVKNLPKDITQDR 158
+ L ++ V A R E S+ + LY+KNL + ++
Sbjct: 299 NG--ISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 356
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
LKE+F+ +G +T + G R +GFV ++ A +AL E++G+++
Sbjct: 357 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSSPEEASRALS-----EMNGKMI 406
>gi|326916227|ref|XP_003204411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Meleagris gallopavo]
Length = 448
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 48/203 (23%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + C
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTF----CT----- 212
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ A A VK L+V+NL +T++ L++ F+ GK+
Sbjct: 213 ---------------------KEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLE 251
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
+V ++ Y F+HF ER A+KA++ +++G+ ++ AKP DQK
Sbjct: 252 RV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKER 302
Query: 231 SNSQKSALNPTY-------PPHL 246
+++A N Y PPH+
Sbjct: 303 KAQRQAAKNQMYDDYYYYGPPHM 325
>gi|71894995|ref|NP_001026254.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Gallus
gallus]
gi|53129801|emb|CAG31416.1| hypothetical protein RCJMB04_6c17 [Gallus gallus]
Length = 448
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 48/203 (23%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + C
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTF----CT----- 212
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ A A VK L+V+NL +T++ L++ F+ GK+
Sbjct: 213 ---------------------KEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLE 251
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
+V ++ Y F+HF ER A+KA++ +++G+ ++ AKP DQK
Sbjct: 252 RV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKER 302
Query: 231 SNSQKSALNPTY-------PPHL 246
+++A N Y PPH+
Sbjct: 303 KAQRQAAKNQMYDDYYYYGPPHM 325
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 106 GYAYVNYNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDN 165
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 166 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEK 220
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+ ++T++ +ELF+ +G++T + +
Sbjct: 221 KVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQ 280
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F+ SA KA++ E GQ L
Sbjct: 281 EGKSRG-FGFVNFSTHDSAAKAVEELNGKEFRGQEL 315
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+QAI+ +N L KK+ K +A +
Sbjct: 187 ENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTN 246
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ E++ R+ +K G V S L +D + ++RGF F+ + H A + +
Sbjct: 247 VYVKNINLEVTEEEFRELFSKYGE-VTSSTLARDQE--GKSRGFGFVNFSTHDSAAKAVE 303
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ +F K + + AE + Q LY+KNL DI D+
Sbjct: 304 ELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDK 363
Query: 159 LKELFAHHGKITKVVI 174
L+++F+ G IT +
Sbjct: 364 LRQMFSEFGPITSAKV 379
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 25/102 (24%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR---------------- 50
G+++G+ FV F T + A++A+EELN E +G+++ AQ KH
Sbjct: 282 GKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEK 341
Query: 51 --------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 342 ANKYQGVNLYIKNLADDIDDDKLRQMFSEFGP-ITSAKVMRD 382
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y + A
Sbjct: 61 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAV-TRRSLGYAYVNYNSTADG 118
Query: 106 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 119 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDTAIDNKALHDT 171
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 172 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 230
Query: 223 ADQKT 227
D+++
Sbjct: 231 KDRQS 235
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + RG+AF+ + N A+ + ++M+ K D
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---RGYAFVHFQNQMAADRAIEEMNGALLK-DCR 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ + A++ +Y+KN D+ RL+E+F+ +GK V +
Sbjct: 167 LFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDST 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ+L A+ +A+++
Sbjct: 227 GKSKG-FGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 41/255 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D ++GYAFV F+ + A +AIEE+N C L K ++ + + Q K F
Sbjct: 132 DDQGSRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNKANEFTN 191
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D + + +K G V S++++ D +++GF F+ +Y+H A+ + +
Sbjct: 192 IYIKNFGDDMDDKRLEEVFSKYGKTV-SVKVMTDS--TGKSKGFGFVSFYSHEAAQKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K + A + + E Q LY+KNL I ++
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD-- 215
L+ F+ G I++V + + RS+ +G + F+ A +A+ E++G++L
Sbjct: 309 LRREFSSFGSISRVKVMKEEG---RSKGFGLICFSSPEEATRAMT-----EMNGRILGSK 360
Query: 216 -CSLAKPQADQKTSG 229
++A Q+ Q+ G
Sbjct: 361 PLNIALAQSLQQVXG 375
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G++L A+ +A+++
Sbjct: 227 TGKSKG-FGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQ 273
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYG-KTLSVKVMTDP--TGKSKGFGFVSFEKHEEANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K + A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 164
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 142/348 (40%), Gaps = 49/348 (14%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
+GE+KGY FV + E A AIE+LN + KK+ K +++
Sbjct: 249 AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYV 308
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ EDD+++ K G + S+ +++D +++ F F+ + + A + Q ++
Sbjct: 309 KNLAETTTEDDLKEIFGKFG-TITSVVVMRD--GDGRSKCFGFVNFESPDEAALAVQDLN 365
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF D V A ++ E++ Q LY+KNL + ++L
Sbjct: 366 GKKFS--DKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 423
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ELFA G IT + G R GFV F A +AL + + L +LA
Sbjct: 424 RELFAEFGTITSCKVMRDSNGASRGS-GFVAFKSADDASRALAEMNNKMVGNKPLYVALA 482
Query: 220 KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA- 278
+ + D+K +Q S + P VG L G VP G Q M YG+ A
Sbjct: 483 QRKEDRKAR--LQAQFSQMRPVPMAQ----TVGPRMQMLPPG-VPVG--QQMFYGQPPAF 533
Query: 279 ----PG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 319
PG +P + P G P VQQ P +P R GA
Sbjct: 534 INPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGA 581
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 22/211 (10%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S ++ GYA+V + T A++A+E LN + G+ I+ + +FI N+
Sbjct: 162 SRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLD 221
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
++ + G ++S ++ DP A +++G+ F++Y A + +K++
Sbjct: 222 KSIDNKALHDTFCVFG-NILSCKVATDP--AGESKGYGFVQYERDEAAHAAIEKLNG--M 276
Query: 118 KLDDN----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
++D P V + N+ S + +YVKNL + T+D LKE+F G IT VV
Sbjct: 277 LMNDKKVYVGPFVRKQERDNSPGSV--KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV 334
Query: 174 IPPAKPGQERSR-YGFVHFAERSSAMKALKN 203
+ + G RS+ +GFV+F A A+++
Sbjct: 335 V--MRDGDGRSKCFGFVNFESPDEAALAVQD 363
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 146/353 (41%), Gaps = 54/353 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 53
SGE+KGY FV F +E A AI +LN L KK+ S + +++
Sbjct: 163 SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYV 222
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ED++++ K GP + S+ +++ + ++R F F+ + N A + + ++
Sbjct: 223 KNLSESTTEDNLKEIFGKFGP-ITSVVVMR--EGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQD-R 158
KF DD V A ++ E++ +Q LY+KNL I D +
Sbjct: 280 GKKF--DDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEK 337
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+FA G IT + G + GFV F A +AL I + L +L
Sbjct: 338 LKEIFADFGTITSCKVMRDLNGVSKGS-GFVAFKSAEDASRALVAMNGKMIGSKPLYVAL 396
Query: 219 AKPQADQKTSGGSNSQKSALNP-TYPPHLGYGM------VGGAYGALGAGYVPAGFAQPM 271
A+ + +++ +Q S + P PP + M V G L G P F P
Sbjct: 397 AQRKEERRAR--LQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQ 454
Query: 272 VYGRGAAPGGMAMLPMLLPDGR--IGYV--LQQPGVQQHNPPPQPRSGRGGAG 320
G L+P R +G + P VQQ P +P R G G
Sbjct: 455 --------PGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTG 499
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 22/213 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGE 62
GYA+V F + A++A+E LN + GK I+ S +FI N+ ++
Sbjct: 81 GYAYVNFSSPADAARALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDN 140
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ + + +++G+ F+++ A+ + K++ L+D
Sbjct: 141 KALYDTFSVFG-NILSCKVAT--EMSGESKGYGFVQFELEEAAQNAISKLNG--MLLNDK 195
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P V + N S + +YVKNL + T+D LKE+F G IT VV+ +
Sbjct: 196 KVYVGPFVRKQERENV--SGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVV--MR 251
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEID 210
G +SR +GFV+F A +A+++ + D
Sbjct: 252 EGDGKSRCFGFVNFENPDDAARAVEDLNGKKFD 284
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG +KG+ FV F ++E A +AI++LN L K++ K +F+
Sbjct: 293 SGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFV 352
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D+ + + GP + S+ +++D +++ F F+ + N A S + ++
Sbjct: 353 KNISEGMTEEDLTRIFGEFGP-ITSVVVMRD--GDGKSKCFGFVNFENVDDAAMSVEALN 409
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E+ Q LY+KNL I D+L
Sbjct: 410 GQKF--DDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKL 467
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELFA G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 468 KELFAQFGTITSCKVMRDPNGLSRGS-GFVAFSSPEEASRALAEMNSKMVVSKPLYVALA 526
Query: 220 KPQADQK 226
+ + D++
Sbjct: 527 QRKEDRR 533
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 24/213 (11%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + E A++A++ LN L GK I+ + HR +FI N+ +
Sbjct: 211 GYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYS---HRDPSIRKSGTGNIFIKNLDKG 267
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D + ++G F+++ + A+ + K++ L
Sbjct: 268 IDHKALHDTFSAFG-NILSCKVATDA--SGMSKGHGFVQFDSEEAAQKAIDKLNG--MLL 322
Query: 120 DDNAPTVS-WADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V + + ES+ + ++VKN+ + +T++ L +F G IT VV+
Sbjct: 323 NDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRD 382
Query: 178 KPGQERSRYGFVHFAERSSAMKALK--NTEKYE 208
G+ + +GFV+F A +++ N +K++
Sbjct: 383 GDGKSKC-FGFVNFENVDDAAMSVEALNGQKFD 414
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 50/313 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------R 50
++G +KG+ FV + + E A AIE +N L G++I AK
Sbjct: 175 ENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTN 234
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+ N ED++R+ GP + SI L D + N+GF F+ + H A + +
Sbjct: 235 VFVKNFDTESTEDELRELFESYGP-ITSIHLQVDSE--GHNKGFGFVNFAEHDDAVKAVE 291
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
+++ ++K V A +N E Q L++KNL + I
Sbjct: 292 ALNDKEYK--GKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDD 349
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
RL+E F G IT + + G+ R +GFV + A KA+ + + + L
Sbjct: 350 ARLEEEFKPFGTITSAKVMLDENGKSRG-FGFVCLSTPEEATKAISEMNQRMVANKPLYV 408
Query: 217 SLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGR- 275
+LA+P+A +++ Q A N G G +P F QP+ YG+
Sbjct: 409 ALAQPKAIRRSQLAQQIQ--ARNQMRMQQQA-----------GPG-IPNQFVQPIFYGQQ 454
Query: 276 -GAAPGGMAMLPM 287
G P G + PM
Sbjct: 455 PGMLPPGARVPPM 467
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 14/214 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GY +V F ++ +A+EELN E+KG + + +Q L FI N+
Sbjct: 94 GYGYVNFHSQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIEN 153
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD- 121
+ + G V+S ++ D +N N ++GF F+ Y + A+ + + ++ +
Sbjct: 154 KTLHDTFSSFG-KVLSCKVATD-ENGN-SKGFGFVHYESDEAAQAAIENINGMLLNGREI 210
Query: 122 -NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
P ++ D + ++VKN + T+D L+ELF +G IT + + G
Sbjct: 211 YVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEG 270
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV+FAE A+KA++ E G+ L
Sbjct: 271 HNKG-FGFVNFAEHDDAVKAVEALNDKEYKGKPL 303
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 123 APTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
A + A+ N S+ AS+ A LYV L +T+ L E F+ G + + + +
Sbjct: 31 ATSTEAAEESNESSTQASETLASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTK 90
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD--QKTSGGSNSQKSALN 239
YG+V+F +++ +AL+ EI G + C L Q D + SG N L+
Sbjct: 91 RSLGYGYVNFHSQAAGERALEELNYAEIKG--VRCRLMWSQRDPSLRRSGSGNIFIKNLD 148
Query: 240 P 240
P
Sbjct: 149 P 149
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N +RGF F+ + H A + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCD---ENGSRGFGFVHFETHEAANQAINTMNG--MLLNDR 166
Query: 123 APTVSWA---DPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKN D+ + L+ELF+ GK V + +
Sbjct: 167 KVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
GQ R +GFV+F + A KA+ N E+ G+VL A+ ++++++
Sbjct: 227 NGQSRG-FGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQS 274
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A+QAI +N L +K+ +++
Sbjct: 133 DENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N + ++ +++ ++ G +S++++ D Q+RGF F+ + H A+ +
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGK-TLSVKVMVDEN--GQSRGFGFVNFEKHEEAQKAVS 249
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQ 156
M+ +L V A R+ S Q+K LYVKNL I
Sbjct: 250 NMNGK--ELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++L++ F+ +G IT + G +GFV F+ A KA+ + + L
Sbjct: 308 EKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 217 SLAKPQADQK 226
+LA+ + ++K
Sbjct: 366 ALAQRKEERK 375
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 26/237 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGE--DD 64
GYA+V + +A+E+LN +KG+ + +Q A + GN+ +N E D+
Sbjct: 86 GYAYVNYLNVTDGERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDN 145
Query: 65 MRKAVTKIGP-----------GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
+ K P V+S ++ D Q ++RG+ ++ Y AE + + ++
Sbjct: 146 KVRTAQKTPPHALHDTFAAFGNVLSCKVATDEQG--RSRGYGYVHYETAEAAESAIKAVN 203
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKI 169
L+D V + R S +++A LYVKNL ++TQD+ ELF+ G +
Sbjct: 204 G--MLLNDKKVYVGYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAV 261
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
T VI + G+ + +GFV+F A KA+ + +G+ L S A+ +A+++
Sbjct: 262 TSAVIQTDEEGKSKG-FGFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAERE 317
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 135/356 (37%), Gaps = 46/356 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G ++GY +V + T E A AI+ +N L KK+ K +A
Sbjct: 177 EQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMRAHFTN 236
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ N+ +D + ++ G V S + D + +++GF F+ + NH A +
Sbjct: 237 LYVKNLDLEVTQDQFVELFSQFG-AVTSAVIQTDEE--GKSKGFGFVNFENHEQAAKAVD 293
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+ + F K + + E + Q LY+KNL D+ ++
Sbjct: 294 TLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNLEDDVDDEK 353
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + G + +GFV F+ A KA+ I + L SL
Sbjct: 354 LRAEFEPFGTITSCKVMRDDKGTSKG-FGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSL 412
Query: 219 AKPQADQKTSGGSN-SQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGA 277
A+ + ++ S +Q++ + M A L GY+ P G
Sbjct: 413 AQRREVRRQQLESQIAQRNQIR----------MQQAAAAGLPGGYINGPMYYPPGPGAYP 462
Query: 278 APGGMAML-----PMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRR 328
G M+ ML P R Q PG+ +P QP G GG GG R
Sbjct: 463 PQAGRGMMGYGQPGMLPPRPRYAPNQQVPGMPVPSPYGQPPQGYGGMPGYPRGGPR 518
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG++KGY FV F +E A +AIE+LN L K++ K +F+
Sbjct: 153 SGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFV 212
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D+ KA ++ G + SI +++D ++R F F+ + N A + +
Sbjct: 213 KNLSETTTEEDLNKAFSEFGT-LTSIVVMRDAD--GKSRCFGFVNFENADDAARAVDTL- 268
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
N K +DD V A ++ E++ Q LY+KNL I D+L
Sbjct: 269 NGKL-VDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKL 327
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELFA G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 328 KELFAPFGTITSCKVMRDPNGISRGS-GFVAFSTPDEASRALVEMNGKMVVSKPLYVALA 386
Query: 220 KPQADQK 226
+ + D++
Sbjct: 387 QRKEDRR 393
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + A++A++ LN L GK I+ + HR +FI N+ +
Sbjct: 71 GYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYS---HRDPSIRKSGAGNIFIKNLDKA 127
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q++G+ F+++ N A + +K++ L
Sbjct: 128 IDHKALHDTFSAFG-SILSCKVALD--SSGQSKGYGFVQFDNEESALKAIEKLNG--MLL 182
Query: 120 DDNAPTVSWADPRNAESSAA--SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V + S+ ++VKNL + T++ L + F+ G +T +V+
Sbjct: 183 NDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRD 242
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
G+ R +GFV+F A +A+ ++G+++D
Sbjct: 243 ADGKSRC-FGFVNFENADDAARAVDT-----LNGKLVD 274
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ R+
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K D
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKDCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ + AS+ +Y+KN D+ +RL+E+F+ +GK V +
Sbjct: 167 VFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 227 GKSKG-FGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQ 272
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 116/236 (49%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHR------ 50
D +KGYAFV F+ + A +AIEE+N LK K+ K A+ +++
Sbjct: 132 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASEFTN 191
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ +R+ +K G +S++++ DP + +++GF F+ + NH A+ + +
Sbjct: 192 VYIKNFGDDMDDERLREVFSKYGK-TLSVKVMTDP--SGKSKGFGFVSFDNHEAAQKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + + E Q LY+KNL I ++
Sbjct: 249 EMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G I++V + + GQ + +G + F+ A KA+ E++GQ+L
Sbjct: 309 LRKEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEEATKAMT-----EMNGQIL 357
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRK 67
KG+A + F T E +A+ EL + + GK+ I + Q L++ N+ ++W ++ +++
Sbjct: 235 KGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKE 294
Query: 68 AVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAP 124
+ G + L++D N N G AF+E+ +H+ ++ Y R + ++ F +D A
Sbjct: 295 KLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAE 354
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
VS+A+ + +QVK +++ LP +D ++ L +G + KV + PG R
Sbjct: 355 -VSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARR 413
Query: 184 SRYGFVHFAERSSAMKA 200
YGFV F ++A++
Sbjct: 414 KNYGFVTFGTHAAAVEC 430
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 40 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
IK + Q + +F+G + + E D+RK +K+G + + + +PQ +N+GFA + +
Sbjct: 185 IKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGE-ITEVRMTVNPQ-TKRNKGFALLRF 242
Query: 100 YNHACAEYSRQKMSNP 115
+ + ++ NP
Sbjct: 243 ETVEHVKRALAELKNP 258
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 30/241 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RL 51
+G +KG+ FV F + E A +AI+ +N L G+++ K A+A +
Sbjct: 165 TGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNV 224
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
+I N+ E + + K+ P V S+ L KD + + RGF F+ Y HA A + ++
Sbjct: 225 YIKNISLETPEQEFEEFFKKVAP-VTSVHLEKDSEG--KLRGFGFVNYETHAGAAKAVEE 281
Query: 112 MSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
++ +F K + + E Q L++KNL I +RL
Sbjct: 282 LNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERL 341
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+E F+ G IT V + + G+ + +GFV F+ A KA+ + + G+ L ++A
Sbjct: 342 REEFSPFGTITSVKVMTTENGKSKG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 400
Query: 220 K 220
+
Sbjct: 401 Q 401
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 13/238 (5%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E QAIE+LN +KG+ + +Q L FI N+ +
Sbjct: 82 GYAYVNFNDYEAGRQAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDN 141
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD- 121
+ + G ++S ++ D N ++GF F+ + + A + ++ +
Sbjct: 142 KALHDTFSVFG-NILSCKIATDEVTGN-SKGFGFVHFESDEAAREAIDAINGMLLNGQEV 199
Query: 122 -NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
AP VS D ++ A + +Y+KN+ + + +E F +T V + G
Sbjct: 200 YVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEG 259
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238
+ R +GFV++ + A KA++ E GQ L A+ + +++ ++S L
Sbjct: 260 KLRG-FGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKL 316
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 30/120 (25%)
Query: 4 KDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
KDS G+ +G+ FV + T A++A+EELN E G+++ AQ K+
Sbjct: 255 KDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQS 314
Query: 51 ------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFI 97
LFI N+ + ++ +R+ + G +I VK N +++GF F+
Sbjct: 315 KLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFG----TITSVKVMTTENGKSKGFGFV 370
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 10/182 (5%)
Query: 31 NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 90
S + +K++ S A L++G + E + + IG V SI + +D
Sbjct: 26 TSTDSDSQKVETSTA----SLYVGELDPTVSEALLYDIFSPIG-SVSSIRVCRDAITKT- 79
Query: 91 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
+ G+A++ + ++ + +K++ K S DP + + + +++KNL
Sbjct: 80 SLGYAYVNFNDYEAGRQAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSGN----IFIKNL 135
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
DI L + F+ G I I + +GFVHF +A +A+ ++
Sbjct: 136 HADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLN 195
Query: 211 GQ 212
GQ
Sbjct: 196 GQ 197
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 136/307 (44%), Gaps = 49/307 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
+ G++KGY FV F T+E A+ +IE++N L KK+ + K +LF
Sbjct: 125 EKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLFTN 184
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +R K GP + KD ++RGF F+ + AE + Q
Sbjct: 185 VYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKD----GKSRGFGFVAFEKPEDAEEAVQ 240
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQ 156
K++ + D V A +N Q+K LYVKNL I
Sbjct: 241 KLNGKELS-DGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDD 299
Query: 157 DRLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQV 213
+RL++ FA +G IT KV++ + RS+ +GFV F+ A KA+ + +
Sbjct: 300 ERLRKEFAPYGTITSAKVML-----DEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKP 354
Query: 214 LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPM-V 272
L +LA+ + ++K+ S + +N H +G Y G+ ++P AQP
Sbjct: 355 LYVALAQRKEERKSHLASQYIQR-VNSLRMQH-----IGQVYQQSGSYFMPT-IAQPQRF 407
Query: 273 YGRGAAP 279
YG AP
Sbjct: 408 YGPQVAP 414
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KG+ I+ +Q L FI N+ +
Sbjct: 44 GYAYVNFQQPADAERALDTMNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDN 103
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
M + G ++S ++ +D + Q++G+ F+ + A S +K++ L++
Sbjct: 104 KAMYDTFSAFG-NILSCKVAQDEK--GQSKGYGFVHFETEESANTSIEKVNG--MLLNEK 158
Query: 123 APTV-SWADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + + E + K +YVKN +D+T++ L+++F G IT + K
Sbjct: 159 KVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRV-MTK 217
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVL 214
G+ R +GFV F + A +A++ E+ DG+VL
Sbjct: 218 DGKSRG-FGFVAFEKPEDAEEAVQKLNGKELSDGKVL 253
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + E +A+EELN +KGK + +Q + +FI N+
Sbjct: 89 GYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDN 148
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L++
Sbjct: 149 KALHDTFAAFG-NILSCKVAQDEHG--NSKGYGFVHYETAEAANNAIKHVNG--MLLNEK 203
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T D ++LF HG IT I A+
Sbjct: 204 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASI--AR 261
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
Q +SR +GFV++ + +A A++ E GQ L
Sbjct: 262 DDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKL 298
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E A+ AI+ +N L KK+ K +A
Sbjct: 170 EHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTN 229
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +D+ R K G + S + +D Q ++RGF F+ Y H A + +
Sbjct: 230 IYVKNIDLDVTDDEFRDLFEKHG-DITSASIARDDQ--GKSRGFGFVNYIKHEAASVAVE 286
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ +F K + + E + Q LY+KNL D+ ++
Sbjct: 287 TLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 346
Query: 159 LKELFAHHGKITKVVI 174
L+++F G IT +
Sbjct: 347 LRDMFTPFGTITSAKV 362
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 109/213 (51%), Gaps = 17/213 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D + + +G+AF+ + + + A+ + ++M N KF D
Sbjct: 112 KSLYECFSAFGK-ILSSKVMSDDRGS---KGYAFVHFQSQSAADRAIEEM-NGKFLKDCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ ++ E+ + AS+ +Y+KN D+ +RL+E+F+ +G+I V +
Sbjct: 167 VFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSC 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
G+ R +GFV F +A KA++ E++GQ
Sbjct: 227 GKSRG-FGFVSFDSHEAARKAVEEMNGKEVNGQ 258
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 109/219 (49%), Gaps = 31/219 (14%)
Query: 9 AKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIGNVPR 58
+KGYAFV F+++ A +AIEE+N C++ K +K + + + K F +
Sbjct: 136 SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIK 195
Query: 59 NWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS- 113
N+G+D +R+ + G ++S++++ + ++RGF F+ + +H A + ++M+
Sbjct: 196 NFGDDMDDERLREVFSTYGR-ILSVKVM--TNSCGKSRGFGFVSFDSHEAARKAVEEMNG 252
Query: 114 -----NPKF------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
P F K++ A + E Q LY+KNL ++I ++L++
Sbjct: 253 KEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKE 312
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
F+ G I++V + + GQ + +G + F+ A +A+
Sbjct: 313 FSSFGSISRVKVMQ-EEGQSKG-FGLICFSSSEDAARAM 349
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 28/117 (23%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------ 48
G+++G+ FV+F + E A +A+EE+N E+ G+ I AQ K
Sbjct: 227 GKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKER 286
Query: 49 ------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+L+I N+ N ++ +RK + G SI VK Q Q++GF I +
Sbjct: 287 IRGCQGAKLYIKNLDENIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDR 166
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R + A + +YVKNL D+ + RL++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ N E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A AI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E ++ ++ G ++S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFG-KMLSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I ++
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 11/224 (4%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMR 66
GYA+V F E + +A+E+LN ++G+ + +Q + R GN+ +N E
Sbjct: 122 GYAYVNFLNAEDSERALEQLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDN 181
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
KA+ I K N + + G+ F+ Y ++ AE + + ++ L+D V
Sbjct: 182 KALHDTFAAFGKILSCKVASNEHGSLGYGFVHYESNDAAEAAIKHVNG--MLLNDKKVYV 239
Query: 127 ----SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
S D + A + +YVKNL +TQ+ ++LF +GKIT I + G+
Sbjct: 240 GHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKS 299
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
R +GFV+F+E A KA++ E GQ L A+ +++++
Sbjct: 300 RG-FGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSERE 342
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 30/236 (12%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLFIGNV 56
GY FV + + + A AI+ +N L KK+ K A+A + +++ N+
Sbjct: 208 GYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNL 267
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+++ K K G + S + D + ++RGF F+ + H A + +++++ +
Sbjct: 268 DPAVTQEEFEKLFEKYG-KITSAAIATDQEG--KSRGFGFVNFSEHEQAAKAVEELNDTE 324
Query: 117 F------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFA 164
F K + + E + Q LY+KNLP+D +RL+E FA
Sbjct: 325 FHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFA 384
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
G T + G R +GFV ++ A KA+ I+ + L +LA+
Sbjct: 385 PFGTTTSAKVMRTPTGASRG-FGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 32/137 (23%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR---------------- 50
G+++G+ FV F E A++A+EELN E G+K+ AQ K
Sbjct: 297 GKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEK 356
Query: 51 --------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY-- 100
L+I N+P ++ ++ +++ G S ++++ P A +RGF F+ Y
Sbjct: 357 LSKYQGVNLYIKNLPEDFDDERLQEEFAPFG-TTTSAKVMRTPTGA--SRGFGFVCYSAP 413
Query: 101 ---NHACAEYSRQKMSN 114
N A AE + + + N
Sbjct: 414 EEANKAVAEMNGKMIEN 430
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDR 166
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R + A + +YVKNL D+ + RL++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ N E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A AI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E ++ ++ G ++S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFG-KMLSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I ++
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDR 166
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R + A + +YVKNL D+ + RL++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDV 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ N E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A AI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E ++ ++ G ++S+++++D + +RGF F+ + H A+ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFG-KMLSVKVMRD--VSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I ++
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ +G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 68/354 (19%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G++KG+ FV F + E A AIE +N L ++ A+ ++
Sbjct: 185 GQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVY 244
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ E+++++ T G V S L KD + ++RGFAF+ Y H A S + +
Sbjct: 245 VKNIDLEASEEEVKELFTPFGT-VTSFYLEKDAE--GKSRGFAFVNYEEHEAAVKSIESL 301
Query: 113 SNPKFK---------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
++ +K L++ A E SQ L+VKNL I +
Sbjct: 302 NDQDYKGKKLYVGRAQKKSERLEELKKQYEAA---RIEKLTKSQGVNLFVKNLDDSIDDE 358
Query: 158 RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
+LKE F G I+ V + + G+ + +GFV F+ A +A+ ++ + G+ L +
Sbjct: 359 KLKEEFQSFGTISSVKVMIDESGKSKG-FGFVSFSSPEEASRAISEMNQHMLAGKPLYVA 417
Query: 218 LAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGA 277
LA+ + +++ Q A N A G L ++P P +YG+
Sbjct: 418 LAQRKDVRRSQ--LEQQIQARNQLRLQQ------AAAAGGLPGQFIPT----PFIYGQQ- 464
Query: 278 APGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG----GAGSSSSGGR 327
P LP G G + QP + PR G+G AG GGR
Sbjct: 465 --------PQFLPPGARGPLPNQPFL-------IPRPGQGLPPQAAGGQWVGGR 503
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 111/227 (48%), Gaps = 18/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGE 62
GYA+V + + +AI+ELN +KG+ I+ +Q AK R +FI N+
Sbjct: 102 GYAYVNYHNVKDGEKAIDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDN 161
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D N Q++GF F+ + + A+ + + ++ L++N
Sbjct: 162 KALHDTFSAFG-RILSCKVATD--NFGQSKGFGFVHFESPEAAQAAIENVNG--MLLNNN 216
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P V+ D ++ +YVKN+ + +++ +KELF G +T +
Sbjct: 217 EVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDA 276
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
G+ R + FV++ E +A+K++++ + G+ L A+ ++++
Sbjct: 277 EGKSRG-FAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSER 322
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
+SG++KG+ FV+F + E AS+AI E+N L GK + + AQ K
Sbjct: 379 ESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQRK 422
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG++KGY FV F +E A +AIE+LN L K++ K +F+
Sbjct: 75 SGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFV 134
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D+ KA ++ G + SI +++D ++R F F+ + N A + +
Sbjct: 135 KNLSETTTEEDLNKAFSEFG-TLTSIVVMRDAD--GKSRCFGFVNFENADDAARAVDTL- 190
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
N K +DD V A ++ E++ Q LY+KNL I D+L
Sbjct: 191 NGKL-VDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKL 249
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELFA G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 250 KELFAPFGTITSCKVMRDPNGISRGS-GFVAFSTPDEASRALVEMNGKMVVSKPLYVALA 308
Query: 220 KPQADQK 226
+ + D++
Sbjct: 309 QRKEDRR 315
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 186
S DP +S A + +++KNL K I L + F+ G I + GQ + Y
Sbjct: 27 SHRDPSIRKSGAGN----IFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKG-Y 81
Query: 187 GFVHFAERSSAMKALKNTEKYEIDGQVLD 215
GFV F SA+KA++ +++G +L+
Sbjct: 82 GFVQFDNEESALKAIE-----KLNGMLLN 105
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 151 GYAYVNFLKLADAQKALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 210
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + RG+AF+ + N A+ + ++M+ K D
Sbjct: 211 KTLYEHFSAFGK-ILSSKVMSDDQGS---RGYAFVHFQNQNAADRAIEEMNGALLK-DCR 265
Query: 123 APTVSWADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ ++V +YVKN D+ +RLKE+F+ +GK V +
Sbjct: 266 LFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSG 325
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +++GQ+L A+ +++++
Sbjct: 326 GKSKG-FGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQ 371
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 38/237 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D ++GYAFV F+ + A +AIEE+N C L K +K + + Q K F
Sbjct: 231 DDQGSRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNEFTN 290
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 291 VYVKNFGDDMDDERLKEVFSKYGK-TLSVKVMTD--SGGKSKGFGFVSFDSHEAAKKAVE 347
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K + A + E Q LY+KNL I ++
Sbjct: 348 EMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEK 407
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L F+ G I++V I + RS+ +G + F+ A KA+ E++G++L
Sbjct: 408 LWREFSSFGSISRVKIMRE---EGRSKGFGLICFSSPEEATKAMA-----EMNGRIL 456
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 45 AQAKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 101
+AK+R L++G++ + ED + K + +GP V+SI + +D ++ G+A++ +
Sbjct: 102 VEAKYRQASLYVGDLSADVTEDLLFKKFSAVGP-VLSIRICRDLVT-RRSLGYAYVNFLK 159
Query: 102 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
A A+ + M+ F + P R+A S + +++KNL K I L E
Sbjct: 160 LADAQKALDTMN---FDMIKGKPIRLMWSQRDAYLR-KSGIGNVFIKNLDKSIDNKTLYE 215
Query: 162 LFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL-DCSL 218
F+ GKI + G SR Y FVHF +++A +A++ E++G +L DC L
Sbjct: 216 HFSAFGKILSSKVMSDDQG---SRGYAFVHFQNQNAADRAIE-----EMNGALLKDCRL 266
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 22/232 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 86 GYAYVNYLNAADGERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDN 145
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D +++G+ F+ Y AE + + ++ L+D
Sbjct: 146 KALHDTFAAFG-NVLSCKVATDEHG--RSKGYGFVHYETAEAAETAIKAVNG--MLLNDK 200
Query: 123 APTVSWADPRNAES----SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVI 174
V R A S S ++KA +YVKNL ++TQD +LF G +T VI
Sbjct: 201 KVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVI 260
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ GQ R +GFV+F A KA++ E G+ L S A+ +A+++
Sbjct: 261 QTDEQGQSRG-FGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAERE 311
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 34/246 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHRL----- 51
+ G +KGY FV + T E A AI+ +N L KK+ K S+ + + +L
Sbjct: 167 EHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLEEMKA 226
Query: 52 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
++ N+ +DD K + G V S + D Q Q+RGF F+ + H A+
Sbjct: 227 QFTNIYVKNLDPEVTQDDFVKLFEQFG-NVTSAVIQTDEQ--GQSRGFGFVNFETHEEAQ 283
Query: 107 YSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 154
+ + + + ++ K + + E + Q LY+KNL DI
Sbjct: 284 KAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDI 343
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+RL++ F G IT + + G + +GFV F+ A KA+ I + L
Sbjct: 344 DDERLRQEFEPFGSITSAKVMRDEKGTSKG-FGFVCFSSPDEATKAVAEMNNKMIGSKPL 402
Query: 215 DCSLAK 220
SLA+
Sbjct: 403 YVSLAQ 408
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 66/360 (18%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAK-HRLF 52
D G++KG+ FV + +E A A++ LN + K + S+ +AK + +F
Sbjct: 245 DIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVF 304
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + ++D+ K ++ G ++ ++ ++R F F+ + + A + +++
Sbjct: 305 VKNLSESTTKEDLIKVFSEYGTITSAVVMIG---MDGKSRCFGFVNFESPDDAARAVEEL 361
Query: 113 SNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDR 158
+ K ++D V A ++ +++ Q + LY+KNL IT D+
Sbjct: 362 NGKK--INDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQ 419
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ELF++ GKIT I + G + GFV F+ R A +AL I G+ L +
Sbjct: 420 LRELFSNFGKITSCKIMRDQNGVSKGS-GFVSFSTREEASQALTEMNGKMISGKPLYVAF 478
Query: 219 AKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYGALGA 260
A+ + ++K +Q S + P YPP L YG A
Sbjct: 479 AQRKEERKAM--LQAQFSQMRPVPMTPSMTPRLPMYPPMPTLGQQLFYGQAPPAMMPPQP 536
Query: 261 GYVPAGFAQPMVYGRGAAPGGMAMLP-MLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 319
GY GF Q +V G PGG A +P +P + QPG QQ P RSG G A
Sbjct: 537 GY---GFQQQLV--PGMRPGGGAHMPNYFVP-------VVQPG-QQGPRPGMRRSGPGSA 583
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNV 56
+S + GYA+V + A++A+E LN L K I+ S +FI N+
Sbjct: 158 NSRRSLGYAYVNYSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNL 217
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ + + G ++S ++ D + Q++GF F++Y A+ + + ++
Sbjct: 218 DKTIDNKTLHDTFSAFG-AILSCKVAMD--DIGQSKGFGFVQYEKEESAQSAMKSLNG-- 272
Query: 117 FKLDDNAPTVSWADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L ++ P R E SS ++ ++VKNL + T++ L ++F+ +G IT V
Sbjct: 273 -MLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAV 331
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
+ G+ R +GFV+F A +A++ +I+
Sbjct: 332 VMIGMDGKSRC-FGFVNFESPDDAARAVEELNGKKIN 367
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + + A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETYEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPRNAESSA----ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R ++ A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDS 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV+F + A KA+ + E+ G++L S A+ + +++
Sbjct: 227 SGRSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQ 273
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHR------ 50
D ++G+ FV F T E A QAI +N L +K+ + AA+ R
Sbjct: 133 DEHGSRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D ++ ++R F F+ + H A+ +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFG-KMLSVKVMRD--SSGRSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + + +N Q+K LYVKNL I +
Sbjct: 250 HMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
SG + GY +V F +++ A++A+E LN L GK I+ + + LF+ N+
Sbjct: 72 SGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLE 131
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
N ++ + + G ++S ++ D +A Q++G+ F++Y AE + ++
Sbjct: 132 PNIDSKNLYEIFSSFG-AILSCKVATD--SAGQSKGYGFVQYETEESAEAAINGLNG--- 185
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
L +N R + + +Y+KNLP + ++D L++ FA G+IT V+
Sbjct: 186 MLANNRKMFVGLHMRRRDREV--KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRD 243
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV+F + A++A++ I + L A+ + ++K
Sbjct: 244 ADGASKC-FGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERK 291
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 31/244 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-------RLFIGNVPR 58
+G++KGY FV + T+E A AI LN +K+ + ++I N+P
Sbjct: 159 AGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPT 218
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+ EDD+R+ G + S +++D A++ GF N E++ + + K
Sbjct: 219 EFSEDDLRQEFAPFGE-ITSAVVMRDADGASKCFGFV-----NFKKPEFAIEAVEKANGK 272
Query: 119 -LDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDRLKEL 162
+ D V A + E A + + LY+KN+ I + LK+L
Sbjct: 273 AIGDKTLYVGRAQ-KKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKL 331
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F G++ + G+ + GFV FA + +A+ + + L LA+P+
Sbjct: 332 FEEFGQVASCKVMVDARGRSKGS-GFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 390
Query: 223 ADQK 226
++K
Sbjct: 391 EERK 394
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 113/247 (45%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC---------SAAQAKHR---LFI 53
SG++KGY FV F ++E A +AIE+LN L K++ A K R +F+
Sbjct: 149 SGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKTRFNNVFV 208
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D+ KA + G + S+ +++D ++R F F+ + N A + + ++
Sbjct: 209 KNLSETTAEEDLNKAFGEFGT-ITSVVVMRD--GDGKSRCFGFVNFENADDAAKAAEALN 265
Query: 114 NPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A + E++ Q LY+KNL I +++
Sbjct: 266 GKKF--DDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKI 323
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 324 KELFSPFGTITSCKVMRDPNGISRGS-GFVAFSTPEEASRALLEMNGKMVASKPLYVALA 382
Query: 220 KPQADQK 226
+ + D++
Sbjct: 383 QRKEDRR 389
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 22/199 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIG 54
S + GY +V + + A++A+E LN + G I+ + HR +FI
Sbjct: 62 SRRSLGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMYS---HRDPSVRKSGAGNIFIK 118
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + + + G ++S ++ DP + Q++G+ F+++ + A+ + +K++
Sbjct: 119 NLDKAIDHKALHDTFSVFG-NILSCKVATDP--SGQSKGYGFVQFDSEEAAQKAIEKLNG 175
Query: 115 PKFKLDDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKV 172
L+D V + +A + + ++VKNL + ++ L + F G IT V
Sbjct: 176 --MLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSV 233
Query: 173 VIPPAKPGQERSRYGFVHF 191
V+ G+ R +GFV+F
Sbjct: 234 VVMRDGDGKSRC-FGFVNF 251
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDKHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPRNAESSA----ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R ++ A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV+F + A KA+ + E+ G++L S A+ + +++
Sbjct: 227 SGRSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQ 273
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHR------ 50
D ++G+ FV F T E A QAI +N L +K+ + AA+ R
Sbjct: 133 DKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ ++R F F+ + H A+ +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFG-KMLSVKVMRD--NSGRSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 124 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 183
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE D++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 240
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 241 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 300
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 301 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 355
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 356 VALAQRKEERK 366
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 44 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 103
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 104 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 157
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ D LKELF+ GK V +
Sbjct: 158 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP 217
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ E+ G+ + A+ + +++
Sbjct: 218 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQ 264
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 61
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 62 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 114
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + + G + Y FVHF + +A KA++
Sbjct: 115 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE 147
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 169
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 170 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 224
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 225 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 284
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 285 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 190 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 250 IYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 367 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 415
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 32/247 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+N+GE+ +++ ++ +S+++++DP + +++GF F+ Y H A + ++M+
Sbjct: 193 VYIKNFGEEVDDESLKELFSKTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNG 250
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
+ K++ A + E + Q LY+KNL I ++L++
Sbjct: 251 KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 310
Query: 163 FAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
F+ G IT KV++ RS+ +GFV F+ A KA+ + + L +LA
Sbjct: 311 FSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 365
Query: 220 KPQADQK 226
+ + ++K
Sbjct: 366 QRKEERK 372
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ + KV+ P+
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSKTLSV-KVMRDPS- 224
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 225 -GKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 270
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 119/244 (48%), Gaps = 26/244 (10%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------KCSAAQAKHR---LFIG 54
+ G+++GY FV F ++ A AIE+LNS + GK+I K A+A+ + +++
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEKYTNVYMK 206
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + ED +R+ ++ G ++S+ + KD +G+AF+ + A ++ + M+
Sbjct: 207 NLDADVNEDLLREKFSEFGK-IVSLAIAKDENGL--CKGYAFVNFDKPEDARWAAETMNG 263
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
+F K + ++ E ++V +YVKN+ +T++ L++
Sbjct: 264 TRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEELRKH 323
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F+ G IT + + G+ + +GFV F+ A+ A+K G+ L + A+ +
Sbjct: 324 FSQCGTITSTKLMCDEKGKSKG-FGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKK 382
Query: 223 ADQK 226
D+K
Sbjct: 383 EDRK 386
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 28/205 (13%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHR------LFI 53
K +G + Y + F +++ A+ AIE+ N L GK I+ S + R +F+
Sbjct: 57 KDASTGRSLCYGYANFLSRQDANLAIEKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFV 116
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+P + ++ K G ++S ++ ++RG+ F+++ A + +K+
Sbjct: 117 KNLPESITNAVLQDMFKKFG-NIVSCKVATFED--GKSRGYGFVQFEQEDAAHAAIEKL- 172
Query: 114 NPKFKLDDNAPTVSWAD-------PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
N+ TV+ + + + A + +Y+KNL D+ +D L+E F+
Sbjct: 173 --------NSTTVAGKEIYVGKFMKKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSEF 224
Query: 167 GKITKVVIPPAKPGQERSRYGFVHF 191
GKI + I + G + Y FV+F
Sbjct: 225 GKIVSLAIAKDENGLCKG-YAFVNF 248
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++VKNLP+ IT L+++F G I + + G+ R YGFV F + +A A++
Sbjct: 114 VFVKNLPESITNAVLQDMFKKFGNIVSCKVATFEDGKSRG-YGFVQFEQEDAAHAAIEKL 172
Query: 205 EKYEIDGQ 212
+ G+
Sbjct: 173 NSTTVAGK 180
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
+ G KG A+V F T+ A++A+EE E++G+ + K +
Sbjct: 407 NDGSNKGIAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV 466
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L + N+ + ED +R+ K SI + PQN + +GFAF+E+ + A+ +
Sbjct: 467 LVVNNLSYSATEDSLREVFEK----ATSIRI---PQNQGRAKGFAFVEFSSMEDAKEAMD 519
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + S S Q K L+V+ L +D T++ LKE F G I
Sbjct: 520 SCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSKTLFVRGLSEDTTEETLKEAF--DGSI 577
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ G + +GFV F+ A A + E EIDG + AKP+ D
Sbjct: 578 NARIVTDRDTGASKG-FGFVDFSSSEDAKAAREAMEDGEIDGNKVTLDFAKPKGD 631
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--------------AAQAKH 49
++ G AKG+AFV F + E A +A++ N+ E++G+ I+ + Q+K
Sbjct: 495 QNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSKT 554
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
LF+ R ED + + + G I+ +V D ++ ++GF F+++ + A+ +R
Sbjct: 555 -LFV----RGLSEDTTEETLKEAFDGSINARIVTD-RDTGASKGFGFVDFSSSEDAKAAR 608
Query: 110 QKMSNPKFKLDDNAPTVSWADPR 132
+ M + ++D N T+ +A P+
Sbjct: 609 EAMEDG--EIDGNKVTLDFAKPK 629
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNANQNRGF 94
+ KK K A +FIGN+ D+++ A+ + ++I+ V+ + F
Sbjct: 270 EAKKTKTDTASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTIQDVR----IGGTKKF 325
Query: 95 AFIEYYNHACAE----YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
++++ + E S +K+ + K++ V++ +NAE+ + L+VKN+
Sbjct: 326 GYVDFSSEEEVEKALKLSGKKILGLEVKIE---KAVAFDKNKNAENKKERDSRTLFVKNI 382
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
P + + L+E+F + I IP G + +V F+ + A KAL+ + EI+
Sbjct: 383 PYSTSAEELQEIFENAKDIR---IPTGNDGSNKG-IAYVEFSTEAEANKALEEKQGAEIE 438
Query: 211 GQVL 214
G+ L
Sbjct: 439 GRSL 442
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 50/310 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKH-RLFI 53
SG++KGY FV + T E A +AI++LN L K++ S + K +++
Sbjct: 163 SGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 222
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ++++ K + G S +++D + +++GF F+ + N A + ++
Sbjct: 223 KNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVDALN 279
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
F DD V A ++ E++ SQ LYVKNL + +T D+L
Sbjct: 280 GKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 337
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+E FA G IT + G R GFV F+ A +A+ I + L +LA
Sbjct: 338 REHFAPFGTITSCKVMRDPTGVSRGS-GFVAFSTPEEASRAITEMNGKMIVTKPLYVALA 396
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAG--FAQPMVYGRG 276
+ + D+K +Q S + P PP +G M Y P G Q + YG+G
Sbjct: 397 QRKEDRKAR--LQAQFSQMRPVNMPPAVGPRM---------QMYPPGGPPMGQQLFYGQG 445
Query: 277 AAPGGMAMLP 286
AM+P
Sbjct: 446 PP----AMIP 451
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 18/202 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGE 62
GY +V + T + AS+A+ ELN L G+ I+ S R +FI N+ ++
Sbjct: 81 GYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDH 140
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + GP ++S ++ DP + Q++G+ F++Y A+ + K++ L+D
Sbjct: 141 KALHETFSAFGP-ILSCKVAVDP--SGQSKGYGFVQYDTDEAAQRAIDKLNG--MLLNDK 195
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + + +VK +YVKNL + ++ + L ++F G T VI + G
Sbjct: 196 QVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDG 253
Query: 181 QERSR-YGFVHFAERSSAMKAL 201
+ +S+ +GFV+F A +A+
Sbjct: 254 EGKSKGFGFVNFENSDDAARAV 275
>gi|391331494|ref|XP_003740180.1| PREDICTED: probable RNA-binding protein 46-like [Metaseiulus
occidentalis]
Length = 357
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
RL++ N+P+ ++D+ + G++ + + P + QNRGF FIE+ + A +++
Sbjct: 157 RLYVANIPKVKTKEDIFNHFNRFLGGLVDVMVYTYP-GSTQNRGFCFIEFNSSKNAMFAK 215
Query: 110 QKM--SNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+ + S P V WADP + VK LY+KNL +T L+ FA
Sbjct: 216 ETIVASRPW----GCEVVVDWADPEQEPDEEIMKSVKVLYIKNLSPRVTDADLRRAFAER 271
Query: 167 G-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
G ++ +V + + FVHF RS A KA+K + +D L S AKP
Sbjct: 272 GLQVERVKVI--------RDFAFVHFFTRSLAEKAMKVCQNLTLDDLPLQVSWAKP 319
>gi|221104585|ref|XP_002169901.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 38/295 (12%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------AKHRLFIG 54
++ +G++ GYAF+ + T +LA +AI +L+ L+ KK+K S A+ +++
Sbjct: 46 IRNYTTGQSLGYAFIEYPTAQLAEEAINQLDGMTLQDKKLKVSYARPSSTEIKNSNVYVA 105
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P ED + G +I+ +++ D A+++RG F+ Y + AE + + M+
Sbjct: 106 GLPSWVDEDRLLSLFAPFG-SIITHKILTDA--ASKSRGVGFVRYSLKSDAEKAIESMAG 162
Query: 115 PKFKLDDNAPTVSWA---------------DPRNAESSAASQV---------KALYVKNL 150
A V A P N+ + Q+ +YV L
Sbjct: 163 KVLPDSTTALIVKLAIPPASKQLAAAAAAAQPLNSIAGVPKQIVQYNPMSLSNPVYVYGL 222
Query: 151 PKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208
++ L ELFA G I K++ AKP + YGFV+F ++ A+ A+ +
Sbjct: 223 QPHHSELTLYELFAPFGGILNVKLIRDNAKPEKPCKGYGFVNFRKQDEALAAIATMHNHP 282
Query: 209 IDGQVLDCSLAK-PQADQKTSGG-SNSQKSALNPTYPPHLGYGMVGGAYGALGAG 261
DG++L S + Q Q T+ Q A P ++ GM G YGA+G G
Sbjct: 283 YDGKILQVSFKQNKQLGQATAMNLLMHQGVASTPIPQNNISVGMNYG-YGAVGQG 336
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 32/247 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLFI 53
SG++KGY FV F T+E A +AIE+LN L K++ + + +AK + +F+
Sbjct: 158 SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFV 217
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +D+++K + G + S +++D +++ F F+ + + A + + ++
Sbjct: 218 KNLSESTTDDELKKTFGEFG-TITSAVVMRD--GDGKSKCFGFVNFESTDDAARAVEALN 274
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
K+DD V A ++ E++ Q LYVKNL I ++L
Sbjct: 275 GK--KIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKL 332
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ +G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 333 KELFSSYGTITSCKVMRDPNGVSRGS-GFVAFSTPEEASRALLEMNGKMVASKPLYVTLA 391
Query: 220 KPQADQK 226
+ + D++
Sbjct: 392 QRKEDRR 398
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D ++ G+ ++ Y N A +
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLG-QVVSVRVCRD-LTTRRSLGYGYVNYSNPQDAARALD 93
Query: 111 KMSNPKFKLDDNAPT---VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
++ F +N P S DP +S + +++KNL K I L + F+ G
Sbjct: 94 VLN---FTPLNNRPIRIMYSHRDPSIRKSGQGN----IFIKNLDKAIDHKALHDTFSSFG 146
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + GQ + YGFV F +A KA++ +++G +L+
Sbjct: 147 NILSCKVAVDGSGQSKG-YGFVQFDTEEAAQKAIE-----KLNGMLLN 188
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 40/293 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
+ G++KGY FV F T+E A+ +IE++N L KK+ + K +LF
Sbjct: 134 EKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLFTN 193
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+N+GED +A+ ++ SI + ++RGF F+ + N AE + Q++ N
Sbjct: 194 VYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQEL-N 252
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQDRLK 160
K D V A +N Q+K LYVKNL I +RL+
Sbjct: 253 AKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLR 312
Query: 161 ELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
+ FA +G IT KV++ + RS+ +GFV F+ A KA+ + + L +
Sbjct: 313 KEFAPYGTITSAKVML-----DEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVA 367
Query: 218 LAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQP 270
LA+ + ++K+ S + +N H +G Y G+ ++P AQP
Sbjct: 368 LAQRKEERKSHLASQYIQR-VNSLRMQH-----IGQVYQQSGSYFMPT-IAQP 413
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KG+ I+ +Q L FI N+ +
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
M + G ++S ++ +D + Q++G+ F+ + A S +K++ L++
Sbjct: 113 KAMYDTFSAFG-NILSCKVAQDEK--GQSKGYGFVHFETEESANTSIEKVNG--MLLNEK 167
Query: 123 APTV-SWADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKIT--KVVIPP 176
V + + E + K +YVKN +D+T++ L E+F +G IT +V++
Sbjct: 168 KVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMM-- 225
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVL 214
K G+ R +GFV F +A +A++ E+ DG+VL
Sbjct: 226 -KDGKSRG-FGFVAFENPDAAERAVQELNAKELSDGKVL 262
>gi|321465027|gb|EFX76031.1| hypothetical protein DAPPUDRAFT_23823 [Daphnia pulex]
Length = 177
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69
+GYAFVTF T E A +A+ +L+ E++G+ +K + ++ RLF+GN+P + + ++
Sbjct: 76 RGYAFVTFTTTEAAKEAVNQLHDFEMRGRHMKVRLSVSELRLFVGNIPNSKSKVEIMAEF 135
Query: 70 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
K G+ + + K P + +N GF F+EY +H A ++Q++
Sbjct: 136 NKFAAGLTEVIIYKSP-DLEENGGFCFLEYDSHKSASMAKQRL 177
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KG+ ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N +RG+ F+ + H AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSRGYGFVHFETHDAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ ++LKE+F+ G T V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV F A KA+ E++G+++ A+ + +++
Sbjct: 227 SGGGRG-FGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQ 273
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D ++GY FV F T + A +AIE++N L +K+ + + A+ R F
Sbjct: 133 DENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ +K G S+ ++ D + RGF F+ + NH A+ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFSKFG-NATSVRVMTD--ESGGGRGFGFVSFENHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGSITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 54/320 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKH-RLFI 53
SG++KGY FV + T E A AI++LN L K++ S + K +++
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ++++ K + G S +++D + +++GF F+ + N A + ++
Sbjct: 229 KNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVDALN 285
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
F DD V A ++ E++ SQ LYVKNL + +T D+L
Sbjct: 286 GKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+E FA G IT + G R GFV F+ A +A+ I + L +LA
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGS-GFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAG--FAQPMVYGRG 276
+ + D+K +Q S + P PP +G M Y P G Q + YG+G
Sbjct: 403 QRKEDRKAR--LQAQFSQMRPVNMPPAVGPRM---------QMYPPGGPPMGQQLFYGQG 451
Query: 277 AAPGGMAMLPMLLPDGRIGY 296
P ++P GY
Sbjct: 452 P--------PAMIPQPGFGY 463
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 18/202 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGE 62
GY +V + T + AS+A+ ELN L G+ I+ S R +FI N+ ++
Sbjct: 87 GYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDH 146
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + GP ++S ++ DP + Q++G+ F++Y A+ + K++ L+D
Sbjct: 147 KALHETFSAFGP-ILSCKVAVDP--SGQSKGYGFVQYDTDEAAQGAIDKLNG--MLLNDK 201
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + + +VK +YVKNL + ++ + L ++F G T VI + G
Sbjct: 202 QVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDG 259
Query: 181 QERSR-YGFVHFAERSSAMKAL 201
+ +S+ +GFV+F A +A+
Sbjct: 260 EGKSKGFGFVNFENSDDAARAV 281
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 127/300 (42%), Gaps = 48/300 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFEKHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL DI +R
Sbjct: 250 EMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQE--RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E RSR +GFV F+ A KA+ + + L
Sbjct: 310 LRKAFSPFGTITS-----AKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLY 364
Query: 216 CSLAKPQAD----------QKTSGGSNSQKSALNPTYP-PHLGYGMVGGAYGALGAGYVP 264
SLA + + Q+ +G +NP P P GY M A Y P
Sbjct: 365 VSLAHRKEERQAYLTNEYMQRMAGVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYP 424
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNW 60
+ YA+V F+ + A A++ +N +KGK ++ +Q L F+ N+ ++
Sbjct: 51 SSNYAYVNFQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSI 110
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ V+ G ++S ++V D N ++G+ F+ + H AE + +KM+ L+
Sbjct: 111 NNKALYDTVSAFG-NILSCKVVCD---ENGSKGYGFVHFETHEAAERAIEKMNG--MLLN 164
Query: 121 DNAPTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
D V R AE A A + +Y+KN +D+ +RLK+LF G V +
Sbjct: 165 DRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F + A KA+ E+ G+ + A+ + +++T
Sbjct: 225 DESGKSKG-FGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQT 274
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L+ELF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E +++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 23/252 (9%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------RLFIGNVP 57
K + + GY ++ F +KE A + ++++N+ L G+ ++ + +K L + N+
Sbjct: 120 KRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVSKFDYNPKANLLVKNLD 179
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP-- 115
+ + ++ + + G + S++L P + +RG+AFI++ + AE + M+
Sbjct: 180 KEVTQQELFDSFKQFG-DIQSLKLETYPDGS--SRGYAFIQFQSEEEAEKALNAMNQAEI 236
Query: 116 ---KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
K +++ + + +P+ ++ L+VKNLPK D+LK LF G+I V
Sbjct: 237 KGKKIEINRHEKKATRENPQ------QTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIESV 290
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS- 231
+ + G + YG+V F E A A+ K +ID Q L + + D + + GS
Sbjct: 291 TVQRDEQGNLKD-YGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNEPTQGSR 349
Query: 232 -NSQKSALNPTY 242
N LN T+
Sbjct: 350 LNPITQNLNKTF 361
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 114/234 (48%), Gaps = 33/234 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-----------HRLFIGN 55
G ++GYAF+ F+++E A +A+ +N E+KGKKI+ + + K + LF+ N
Sbjct: 208 GSSRGYAFIQFQSEEEAEKALNAMNQAEIKGKKIEINRHEKKATRENPQQTKFNNLFVKN 267
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA---EYSRQKM 112
+P+ +D ++ K G + S+ + +D Q ++ G+ + +HA A E +++++
Sbjct: 268 LPKGTDDDQLKGLFGKFGE-IESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQI 326
Query: 113 S------NPKFKLDDNAPTV-SWADP--RNAESSAASQVKALYVKNLPKDITQDRLKELF 163
N DN PT S +P +N + S + Y+K +P ++T++ L++ F
Sbjct: 327 DDQFLIVNQHISKKDNEPTQGSRLNPITQNLNKTFNSNI---YIKFIPNEVTEEELRKTF 383
Query: 164 AHHG------KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
+ K+TK V + ++ ++ + A KA++ ++ + G
Sbjct: 384 SMKDANIVSIKLTKFVKKIEDQEVQPYQFAYILYDTVLGAQKAIQTFDQSTVFG 437
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G++KG+ +V F E AS+AI+ LN L G++I +K
Sbjct: 158 ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTN 217
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N+ + + + V K G S+ L + P+ +N+GF F+ + NH A +
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGK-TDSVVLERTPEG--ENKGFGFVNFVNHEDAVKCVE 274
Query: 111 KMSNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++N +FK + + E A Q L++KNL I +
Sbjct: 275 ELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKK 334
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+E FA +G IT + + G+ + +GFV F+ A KA+ + + G+ L ++
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 219 AK 220
A+
Sbjct: 394 AQ 395
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 14/226 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F + A AIE+LN +KGK + +Q L FI N+ +
Sbjct: 77 GYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDN 136
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD- 121
+ + G ++S ++ D +++GF ++ + A + ++ +
Sbjct: 137 KALYDTFSVFG-NILSSKVATD--ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEI 193
Query: 122 -NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
P +S + + + +Y+KN+ + T +EL A GK VV+ G
Sbjct: 194 YVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEG 253
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV+F A+K ++ E GQ L + A+ + +++
Sbjct: 254 ENKG-FGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQ 298
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDS 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ D ++ +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYG-KTLSVKVMTD--SSGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 164
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
+ G KG A+V F T+ A++A+EE E++G+ + K +
Sbjct: 408 NDGSNKGIAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV 467
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L + N+ + ED +R+ K SI + PQN + +GFAF+E+ + A+ +
Sbjct: 468 LVVNNLSYSATEDSLREVFEK----ATSIRI---PQNQGRAKGFAFVEFSSMEDAKEAMD 520
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + S S Q K L+V+ L +D T++ LKE F G I
Sbjct: 521 SCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSKTLFVRGLSEDTTEETLKEAF--DGSI 578
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ G + +GFV F+ A A + E EIDG + AKP+ D
Sbjct: 579 NARIVTDRDTGASKG-FGFVDFSSAEDAKAAREAMEDGEIDGNKVTLDFAKPKGD 632
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--------------AAQAKH 49
++ G AKG+AFV F + E A +A++ N+ E++G+ I+ + Q+K
Sbjct: 496 QNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSKT 555
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
LF+ R ED + + + G I+ +V D ++ ++GF F+++ + A+ +R
Sbjct: 556 -LFV----RGLSEDTTEETLKEAFDGSINARIVTD-RDTGASKGFGFVDFSSAEDAKAAR 609
Query: 110 QKMSNPKFKLDDNAPTVSWADPR 132
+ M + ++D N T+ +A P+
Sbjct: 610 EAMEDG--EIDGNKVTLDFAKPK 630
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNANQNRGF 94
+ KK K A +FIGN+ D+++ A+ + ++I+ V+ ++ F
Sbjct: 271 EAKKTKTDTASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTIQDVR----IGGSKKF 326
Query: 95 AFIEYYNHACAE----YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
++++ + E S +K+ + K++ V++ +NAE+ + L+VKN+
Sbjct: 327 GYVDFSSEEEVEKALKLSGKKILGLEVKIE---KAVAFDKNKNAENKKERDSRTLFVKNI 383
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
P + + L+E+F + I IP G + +V F+ + A KAL+ + EI+
Sbjct: 384 PYSTSAEELQEIFENAKDIR---IPTGNDGSNKG-IAYVEFSTEAEANKALEEKQGAEIE 439
Query: 211 GQVL 214
G+ L
Sbjct: 440 GRSL 443
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNV 56
+S ++ GYA+V + + A++A+E LN + GK I+ S +FI N+
Sbjct: 71 NSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNL 130
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
++ + G ++S ++ DP + ++RG+ F+++ A+ + K++
Sbjct: 131 DKSIDNKALYDTFCAFG-NILSCKIATDP--SGESRGYGFVQFEKDESAQSAIDKLNG-- 185
Query: 117 FKLDDN----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172
++D P V D N S+ + +YVKNL +T D LKE+F +G IT
Sbjct: 186 MLINDKKVFVGPFVRKQDRENVSSNI--KFSNVYVKNLSDTVTDDELKEMFGKYGTITSA 243
Query: 173 VIPPAKPGQERSRYGFVHFAERSSAMKALK 202
V+ G+ R +GFV+F +A +A++
Sbjct: 244 VVMRDSDGKSRC-FGFVNFENADAAAQAVQ 272
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
+ G KG A+V F T+ A++A+EE E++G+ + K +
Sbjct: 407 NDGSNKGIAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV 466
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L + N+ + ED +R+ K SI + PQN + +GFAF+E+ + A+ +
Sbjct: 467 LVVNNLSYSATEDSLREVFEK----ATSIRI---PQNQGRAKGFAFVEFSSMEDAKEAMD 519
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKI 169
+N + + S S Q K L+V+ L +D T++ LKE F G I
Sbjct: 520 SCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSKTLFVRGLSEDTTEETLKEAF--DGSI 577
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
++ G + +GFV F+ A A + E EIDG + AKP+ D
Sbjct: 578 NARIVTDRDTGASKG-FGFVDFSSAEDAKAAREAMEDGEIDGNKVTLDFAKPKGD 631
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--------------AAQAKH 49
++ G AKG+AFV F + E A +A++ N+ E++G+ I+ + Q+K
Sbjct: 495 QNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSKT 554
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
LF+ R ED + + + G I+ +V D ++ ++GF F+++ + A+ +R
Sbjct: 555 -LFV----RGLSEDTTEETLKEAFDGSINARIVTD-RDTGASKGFGFVDFSSAEDAKAAR 608
Query: 110 QKMSNPKFKLDDNAPTVSWADPR 132
+ M + ++D N T+ +A P+
Sbjct: 609 EAMEDG--EIDGNKVTLDFAKPK 629
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 36 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNANQNRGF 94
+ KK K A +FIGN+ D+++ A+ + ++I+ V+ + F
Sbjct: 270 EAKKTKTDTASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTIQDVR----IGGTKKF 325
Query: 95 AFIEYYNHACAE----YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 150
++++ + E S +K+ + K++ V++ +NAE+ + L+VKN+
Sbjct: 326 GYVDFSSEEEVEKALKLSGKKILGLEVKIE---KAVAFDKNKNAENKKERDSRTLFVKNI 382
Query: 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
P + + L+E+F + I IP G + +V F+ + A KAL+ + EI+
Sbjct: 383 PYSTSAEELQEIFENAKDIR---IPTGNDGSNKG-IAYVEFSTEAEANKALEEKQGAEIE 438
Query: 211 GQVL 214
G+ L
Sbjct: 439 GRSL 442
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 TGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 118/251 (47%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ DP +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYG-KTLSVKVMTDP--TGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGAITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 109 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 168
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 169 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 223
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 224 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 283
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 284 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 329
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 189 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 248
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 249 IYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 305
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 306 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 365
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 366 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 414
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 35/269 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLFI 53
SG++KGY FV F +E A +AIE+LN L K++ + +A +AK + +F+
Sbjct: 152 SGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFV 211
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +D+++ + G + S +++D +++ F F+ + N A + + ++
Sbjct: 212 KNLSESTTDDELKNVFGEFG-TITSAVVMRD--GDGKSKCFGFVNFENADDAARAVEALN 268
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LYVKNL + D+L
Sbjct: 269 GKKF--DDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKL 326
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 327 KELFSPFGTITSCKVMRDPNGISRGS-GFVAFSTPDEASRALLEMNGKMVVSKPLYVTLA 385
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLG 247
+ + D++ +Q + + P PP +G
Sbjct: 386 QRKEDRRAR--LQAQFAQMRPVGMPPSVG 412
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 20/211 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GY +V F + A++A++ LN L + I+ + + +FI N+ R
Sbjct: 70 GYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDH 129
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D ++ Q++G+ F+++ N A+ + +K++ L+D
Sbjct: 130 KALHDTFSTFG-NILSCKVATD--SSGQSKGYGFVQFDNEESAQKAIEKLNG--MLLNDK 184
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + S A + K ++VKNL + T D LK +F G IT V+ + G
Sbjct: 185 QVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVV--MRDG 242
Query: 181 QERSR-YGFVHFAERSSAMKALK--NTEKYE 208
+S+ +GFV+F A +A++ N +K++
Sbjct: 243 DGKSKCFGFVNFENADDAARAVEALNGKKFD 273
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D + ++ G+ ++ + N A +
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLG-QVVSVRVCRD-LTSRRSLGYGYVNFSNPQDAARALD 87
Query: 111 KMSNPKFKLDDNAPT---VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
++ F +N P S DP +S + +++KNL + I L + F+ G
Sbjct: 88 VLN---FTPLNNRPIRIMYSHRDPSIRKSGQGN----IFIKNLDRAIDHKALHDTFSTFG 140
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + GQ + YGFV F SA KA++
Sbjct: 141 NILSCKVATDSSGQSKG-YGFVQFDNEESAQKAIE 174
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 112 KTLYEHFSGFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKSCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 31/223 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D +KGYAFV F+ + A +AIEE+N SC++ K +K + + ++K F
Sbjct: 132 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSKASEFTN 191
Query: 55 NVPRNWG----EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G ++ ++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 192 IYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LYVKNL I ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
L+ F+ G I +V + + GQ + +GF+ F+ A KA+
Sbjct: 309 LRNEFSSFGSIIRVKVMQ-QEGQSKG-FGFICFSSLEDATKAM 349
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 TGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 118/251 (47%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ DP +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYG-KTLSVKVMTDP--TGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A+E LN +KG+ + +Q L FI N+ +
Sbjct: 70 GYAYVNFHRMADAERALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDH 129
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D Q ++G+ F+ Y AE + + ++ L+D
Sbjct: 130 KALHDTFSAFG-NILSCKIAHDEQ--GNSKGYGFVHYETLEAAESAIKSVNG--MLLNDR 184
Query: 123 APTVSWADPRNAESS----AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S + Q +YVKN+P D+T + L +LF +G IT VI
Sbjct: 185 KVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDD 244
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV+F + A A+ + K + GQ L S A+ + +++
Sbjct: 245 DGTSKG-FGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNERE 291
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 38/238 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----KCSAAQAKHRL--------- 51
+ G +KGY FV + T E A AI+ +N L +K+ S + + +L
Sbjct: 151 EQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGESRVQFTN 210
Query: 52 -FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++ N+P + ++++ + K G + S + +D + ++GF F+ + H A+ +
Sbjct: 211 IYVKNIPFDVTDEELSQLFGKYG-TITSCVITRD--DDGTSKGFGFVNFEKHQDAQNAVD 267
Query: 111 KMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQ 156
+ F+ D VS A +N E + Q LYVKNL D+
Sbjct: 268 DLHKKDFRGQD--LYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDD 325
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
DRL++ F+ +G IT I + +GFV F A +A+ E++G+++
Sbjct: 326 DRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVT-----EMNGRII 378
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 245 GYAYVNFLHVADAQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 304
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M+ K +
Sbjct: 305 KTLYEHFSTFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGTLLK-NCR 359
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ ++ ES + AS+ +Y+KN D+ RLKE+F+ +G V +
Sbjct: 360 VFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSS 419
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV FA +A A++ +I+GQ++ A+ + +++
Sbjct: 420 GKSKG-FGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQ 465
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 37/252 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D +KGYAFV F+ + A +AIEE+N +C + K +K + S + K F
Sbjct: 325 DDQGSKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNKASEFTN 384
Query: 55 NVPRNWGE--DDMR--KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+ DDMR + +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 385 VYIKNFGDDMDDMRLKEVFSKYGT-TLSVKVMTD--SSGKSKGFGFVSFASHEAAKNAVE 441
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + LY+KNL I ++
Sbjct: 442 EMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEK 501
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ FA G I++V K QE R +G + F+ A+KA+ + + L+
Sbjct: 502 LRKEFASFGSISRV-----KVMQEEGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLN 556
Query: 216 CSLAKPQADQKT 227
+LA+ ++KT
Sbjct: 557 IALAQRNEERKT 568
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
SG + GY +V F +++ A++A+E LN L GK I+ + + LF+ N+
Sbjct: 39 SGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLE 98
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
N ++ + + G ++S ++ D +A Q++G+ F++Y AE + ++
Sbjct: 99 PNIDSKNLYEIFSSFG-AILSCKVATD--SAGQSKGYGFVQYETEESAEAAINGLNG--- 152
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
L +N R + + +Y+KNLP + ++D L++ FA G+IT V+
Sbjct: 153 MLANNRKMFVGLHMRRRDREV--KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRD 210
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV+F + A++A++ I + L A+ + ++K
Sbjct: 211 ADGASKC-FGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERK 258
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 31/244 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-------RLFIGNVPR 58
+G++KGY FV + T+E A AI LN +K+ + ++I N+P
Sbjct: 126 AGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPT 185
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
+ EDD+R+ G + S +++D A++ GF N E++ + + K
Sbjct: 186 EFSEDDLRQEFAPFGE-ITSAVVMRDADGASKCFGFV-----NFKKPEFAIEAVEKANGK 239
Query: 119 -LDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDRLKEL 162
+ D V A + E A + + LY+KN+ I + LK+L
Sbjct: 240 AIGDKTLYVGRAQ-KKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKL 298
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F G++ + G+ + GFV FA + +A+ + + L LA+P+
Sbjct: 299 FEEFGQVASCKVMVDARGRSKGS-GFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 357
Query: 223 ADQK 226
++K
Sbjct: 358 EERK 361
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 25/220 (11%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR---------LFIGN 55
+ GE++GYA +++ +E A +A+ ELN + I Q HR L++ N
Sbjct: 131 EKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVERYQPHHREEQLKQYTNLYVKN 190
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + ++ +++ K G ++ V+D N N + GFA++ Y H A + +++
Sbjct: 191 LDPSVDDEKLKEVFAKFGE--VTSAKVRDLGN-NSSVGFAYVAYATHEAAAKAVEELDEK 247
Query: 116 KFKLDDNAPTVSWADPRNAESSAASQVKA-------------LYVKNLPKDITQDRLKEL 162
L +S R+ E + + LYVKN +T ++LKEL
Sbjct: 248 SSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSEKLKEL 307
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
F G+ V + K Q +GFV F E+S+A +A++
Sbjct: 308 FERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQ 347
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + N E + ++GP V S+ + D ++ G+ ++ + N A AE +
Sbjct: 11 IWVGGLDPNLNEQKLYDHFVRVGP-VASVRVCVD-TVTQKSLGYGYVNFQNPADAE---K 65
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL + A + S S V + VK LP + LKE+F+ G++T
Sbjct: 66 ALDQAGVKL--GTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLT 123
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ + + G+ R Y + + + SA++A++ ID DCS+
Sbjct: 124 AIGLATDEKGESRG-YARISYEKEESAVEAVRELNGVSID----DCSIT 167
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 25/224 (11%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR---------L 51
+ ++GE++GYA +++ +E A QA++E+N + I Q HR L
Sbjct: 127 LATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVERYQPHHREEQLKQFTNL 186
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+ + ++ +++ + G ++ V+D ANQ GFA++ Y H A + ++
Sbjct: 187 YVKNLDPSVNDEKLKEVFSAFGE--VTSAKVRD-LGANQTVGFAYVAYATHEAAAKAVEE 243
Query: 112 MSNPKFKLDDNAPTVSWA-------------DPRNAESSAASQVKALYVKNLPKDITQDR 158
+ + L +S R S+ LYVKN +T +R
Sbjct: 244 LDEKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFDDTVTSER 303
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
LKELF G+ V + + + +GFV F E+S+A +A++
Sbjct: 304 LKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQ 347
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++G + N E + ++GP V S+ + D ++ G+ ++ + N A AE +
Sbjct: 11 IWVGGLDPNLNEQKLYDHFVRLGP-VASVRVCVD-SVTQKSLGYGYVNFQNPADAE---K 65
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+ KL + + A + S S V + VK LP + LKE+F+ +G++T
Sbjct: 66 ALDQAGVKL--GSKHIRIAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLT 123
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL-DCSLA 219
+ + + G+ R Y + + + SA++A++ E++G V+ DC++
Sbjct: 124 AIGLATNENGESRG-YARISYEKEESAIQAVQ-----EVNGMVIDDCAIT 167
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 169
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 170 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 224
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 225 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 284
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 285 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 190 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 250 IYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 367 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 415
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 141/333 (42%), Gaps = 61/333 (18%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--------AAQAK-HRLFIGN 55
D+GE+KGY +V + A+ AI ++N + GK++ A QA L++
Sbjct: 165 DAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNRAGQADWTNLYVKG 224
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQN-------------RGFAFIEYYNH 102
+P +W + +R+ K G V S ++ PQ + RGF F+ + H
Sbjct: 225 LPSSWDDAKLREEFEKHG-AVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEH 283
Query: 103 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA------ASQVKA----------LY 146
A + + ++N + + T+ A + A QVK +Y
Sbjct: 284 ESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQGVNVY 343
Query: 147 VKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
VKNL + +T+D ++E FA +G IT +V++ + Q + +GFV F+ A KA+
Sbjct: 344 VKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKG-FGFVCFSAPEEATKAITEM 402
Query: 205 EKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVP 264
+ + + +LA+ + ++T +Q + PP G M GA G G
Sbjct: 403 NGKMLLNKPIYVALAQRREVRRTQ--LEAQFAQRTGGMPPR-GMPMAPGAQGMYG----- 454
Query: 265 AGFAQPMVYGRGAAPGG-----MAMLPMLLPDG 292
M Y GA PG M+P ++P G
Sbjct: 455 ------MPYWMGAQPGMPQQPRQFMMPQMMPRG 481
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 54/252 (21%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMR 66
GYA+V F A +A++ +N +K + + +Q + R +GN+ +N E
Sbjct: 84 GYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDN 143
Query: 67 KAV---TKIGPGVISIELVKDPQNANQNRGFAFIEYY-----NHACAEYSRQKMSNPKFK 118
KA+ + ++S ++ D +A +++G+ ++ Y N A A+ + ++ +
Sbjct: 144 KALYDTFSLFGNILSCKVATD--DAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVH 201
Query: 119 L------DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT-- 170
+ D+ A W + LYVK LP +L+E F HG +T
Sbjct: 202 VGHFVRRDNRAGQADWTN--------------LYVKGLPSSWDDAKLREEFEKHGAVTSC 247
Query: 171 KVVIPPAKPGQERSR-------------YGFVHFAERSSAMKALKNTEKYEI-DGQ---V 213
KV + P + GQ +GFV+F E SA+KA++ E+ DG+
Sbjct: 248 KVQVAP-QEGQGDESKEKGKGGEGKSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTT 306
Query: 214 LDCSLAKPQADQ 225
L C+ A+ ++++
Sbjct: 307 LYCARAQKKSER 318
>gi|147853770|emb|CAN79549.1| hypothetical protein VITISV_022646 [Vitis vinifera]
Length = 798
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 60
M +G++KGY FV F TKE A++AI+E + ++GKKI + + LF GN+P++W
Sbjct: 161 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 220
Query: 61 GEDDMRKAVTKIGPGVISIELV-------KDPQNANQNRGFAFIEYYNHA 103
D+ K V + V S++L QNRGFAF+++ +HA
Sbjct: 221 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHA 270
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKD 153
+++ A A R S F L D+ P V WA+ + +++ +V NLPKD
Sbjct: 724 TLVDFVGWAAARAHRMG-SKSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKD 782
Query: 154 ITQDRLKELFAHHGKI 169
+D LK+LF GK+
Sbjct: 783 ANEDYLKKLFGPFGKV 798
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 178 GYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 237
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N +
Sbjct: 238 KTLYEHFSGFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGRLLKSCK 292
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 293 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSR 352
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 353 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 398
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D +KGYAFV F+ + A +AIEE+N SC++ K +K + + ++K F
Sbjct: 258 DDQGSKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSKASEFTN 317
Query: 55 NVPRNWG----EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G ++ ++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 318 IYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDSR--GKSKGFGFVSFDSHEAAKKAVE 374
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LYVKNL I ++
Sbjct: 375 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEK 434
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I +V + + GQ + +GF+ F+ A KA+ E++G+ L
Sbjct: 435 LRNEFSSFGSIIRVKVMQ-QEGQSKG-FGFICFSSLEDATKAM-----IEMNGRFL 483
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 132 RNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 189
++ E S A++ + +LYV +L D+T+D L F+ G + + I + + Y +V
Sbjct: 123 KDKEMSVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYV 182
Query: 190 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG-----GSNSQKSALNPTYPP 244
+F + + A KAL I G+ + ++ A + SG N KS N T
Sbjct: 183 NFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYE 242
Query: 245 HL-GYGMV 251
H G+G +
Sbjct: 243 HFSGFGKI 250
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 101 GYAYVNYNATADGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDN 160
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 161 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEK 215
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T+D +ELF G +T + +
Sbjct: 216 KVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQ 275
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F SA KA+ + + GQ L
Sbjct: 276 EGKSRG-FGFVNFTTHESASKAVDDLNGKDFHGQDL 310
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 182 ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTN 241
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + EDD R+ K G V S L +D + ++RGF F+ + H A +
Sbjct: 242 VYVKNIAPDVTEDDFRELFEKFGD-VTSSSLARDQE--GKSRGFGFVNFTTHESASKAVD 298
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAES-----SAASQVKA-------LYVKNLPKDITQDR 158
++ F D + E AA KA LY+KNL D+ D+
Sbjct: 299 DLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 159 LKELFAHHGKITKVVI 174
L+++F+ G IT +
Sbjct: 359 LRQMFSEFGPITSAKV 374
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q L FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N +RG+ F+ + H A + + M+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSRGYGFVHFETHEAATRAIETMNG--MLLNDR 166
Query: 123 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ DRL+E+F+ GK V +
Sbjct: 167 KVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV+F + A KA+ + EI+G++L A+ + ++++
Sbjct: 227 NGRSKG-FGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQS 274
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++GY FV F T E A++AIE +N L +K+ +++
Sbjct: 133 DENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + +D +R+ ++ G +S++++ D N +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFG-KTLSVKVMMD--NNGRSKGFGFVNFEKHEEAQKAVA 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
M+ + +L+ + + E Q LYVKNL I +R
Sbjct: 250 DMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGTITSAKV--MTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 38/296 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------R 50
++G++KG+ FV F A +A++ +N L G+++ + +K
Sbjct: 173 ETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKLEEVKANFTN 232
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ NV + ED+ +K GP + SI + KD + + RGF FI + NH A + +
Sbjct: 233 VYVKNVDVDTPEDEFTALFSKYGP-ITSIAMEKDSEG--KFRGFGFINFENHDDAAKAVE 289
Query: 111 KMSNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++++ +FK + + E A Q L+VKNL I ++
Sbjct: 290 ELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEK 349
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ FA G IT + + G+ ++ +GFV F+ A KA+ + + G+ L ++
Sbjct: 350 LEAEFAPFGSITSAKVMRNEEGKSKN-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 408
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYG 274
A+ + +++ Q A N L Y A A AG +P F QPM YG
Sbjct: 409 AQRKDVRRSQLAQQIQ--ARN-----QLRYQQATAAAAAAAAG-MPGQFMQPMFYG 456
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E AIE+LN +KGK + +Q L FI N+ +
Sbjct: 92 GYAYVNFNDHESGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDN 151
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +++GF F+ + A + ++ L+
Sbjct: 152 KALHDTFSVFG-NILSCKIATD--ETGKSKGFGFVHFEEDNAAVEAVDAING--MMLNGR 206
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V+ + S +VKA +YVKN+ D +D LF+ +G IT + +
Sbjct: 207 EVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDS 266
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GF++F A KA++ E GQ L
Sbjct: 267 EGKFRG-FGFINFENHDDAAKAVEELNDLEFKGQKL 301
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR---------- 50
M+ G+ +G+ F+ F + A++A+EELN E KG+K+ AQ K+
Sbjct: 262 MEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKKQYE 321
Query: 51 --------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 95
LF+ N+ + ++ + G + S +++++ + ++N GF
Sbjct: 322 ASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFG-SITSAKVMRNEEGKSKNFGFV 379
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 28/238 (11%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS---------AAQAKHR---LFIG 54
G +KGY FV F T E A+ AIE++N +L GKK+ + AA + + +F+
Sbjct: 162 GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVK 221
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ E+++++ + G + ++ ++KD ++++GF F+ + + A + + M+N
Sbjct: 222 NLDPEMAEEEIKEHFSTFG-VITNVVIMKD--ENDKSKGFGFVNFDDPEAARAAVETMNN 278
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
+ K + + + E Q LYVKNL I + LK+
Sbjct: 279 SQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQE 338
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
F+ +G IT + + G + +GFV F A +A T I+G+ + ++A+
Sbjct: 339 FSRYGNITSAKVMRDEKGISKG-FGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQ 395
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 108/230 (46%), Gaps = 25/230 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + A +A+E LN + GK I+ + HR +FI N+ +
Sbjct: 80 GYGYVNYSSGADAVRAMEALNYTPINGKTIRIMWS---HRDPSTRKSGVGNIFIKNLDES 136
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ GP ++S ++ +++G+ F+ + A + +K++ +L
Sbjct: 137 IDNKALHDTFIAFGP-ILSCKIA---HQDGRSKGYGFVHFETDEAANLAIEKVNG--MQL 190
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
V+ R+ +A + K ++VKNL ++ ++ +KE F+ G IT VVI
Sbjct: 191 VGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGVITNVVI--M 248
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
K ++S+ +GFV+F + +A A++ ++ + + A+ +A+++
Sbjct: 249 KDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAERE 298
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWAD---PRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L+ELF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E +++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGK-MLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKIT 170
L++ F+ +G IT
Sbjct: 310 LRKEFSPYGVIT 321
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 169
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 170 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 224
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 225 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 284
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ + +GFV F +A KA++ +I+GQ++
Sbjct: 285 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLI 318
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 190 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 250 IYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 367 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 415
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 42/297 (14%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG++KGY FV + T+E A +A+ +LN L K++ + +++
Sbjct: 164 SGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYV 223
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +DD++ + G + S ++KD + + +GF F+ + N A + + ++
Sbjct: 224 KNLAESTTDDDLKNIFGEFGK-ITSAVVMKDGE--GKPKGFGFVNFENADDAAKAVESLN 280
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
F DD V A ++ E++ Q LYVKNL ++ ++L
Sbjct: 281 GKTF--DDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKL 338
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF +G +T + G R GFV F+ A KA+ I+ + L ++A
Sbjct: 339 KELFTPYGTVTSCKVMRDPNGMSRGS-GFVAFSTPEEATKAMSEMSGKMIENKPLYVAVA 397
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGR 275
+ + D++ +Q S + P PP +G M G G QPM YG+
Sbjct: 398 QRKEDRRAR--LQAQFSQMRPVAMPPPVGPRMPIYPPGGPGI-------GQPMFYGQ 445
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 29/219 (13%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V F + + A++AI+ELN L GK ++ + HR +FI N+ ++
Sbjct: 82 GYGYVNFTSPQDAARAIQELNYIPLNGKPVRVMYS---HRDPSVRRSGAGNIFIKNLDKS 138
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G +IS ++ D ++ Q++G+ F++Y A+ + +++ L
Sbjct: 139 IDHKALHDTFSVFG-NIISCKVAVD--SSGQSKGYGFVQYETEESAQKAMGQLNG--MLL 193
Query: 120 DDNAPTVSWADPRNAESSAASQV--KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R S ++ +YVKNL + T D LK +F GKIT V+
Sbjct: 194 NDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVV--M 251
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
K G+ + + +GFV+F A KA+++ ++G+ D
Sbjct: 252 KDGEGKPKGFGFVNFENADDAAKAVES-----LNGKTFD 285
>gi|213515090|ref|NP_001135023.1| cytotoxic granule-associated RNA binding protein 1 [Salmo salar]
gi|209738084|gb|ACI69911.1| Nucleolysin TIA-1 [Salmo salar]
Length = 409
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 113/274 (41%), Gaps = 43/274 (15%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-------------AKHRLFIGNVPR 58
Y F+TF A+ A+ LN E+ GKK+K S A H +++G++P
Sbjct: 65 YCFMTFADVNTATSALSILNGREVMGKKLKVSWASGGAGQFKQSQISGTTHSIYVGDLPH 124
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
++ + +A G V+S +V+DP++ ++GF FI Y + AE + QKM
Sbjct: 125 ECDDNMLAQAFRPFGE-VLSSRVVRDPESG-LSKGFGFIVYRHQYEAEEAIQKMHGG--T 180
Query: 119 LDDNAPTVSWADPRNAESS------------AASQVKALYVKNLPKDITQDRLKELFAHH 166
+ + VSWA A +S + + LYV NLP+ + + L F +
Sbjct: 181 ISSKSVKVSWATRSKATTSVPQLNYNDVYQQSGAHNTTLYVGNLPESMKEQFLISFFEPY 240
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + I K + F+ +A ++ +DG V+ ++ D
Sbjct: 241 GAVLDTKIFHDK------HFAFIKMDTHEAAATSIVKCNGQPVDGCVMKVWWSR---DNP 291
Query: 227 TSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGA 260
G+ A PTY G V +YG GA
Sbjct: 292 NLQGNMPSNPAPQPTY-----MGSVPSSYGVSGA 320
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR----------LFIGNV 56
G++KGY FV F T+E A AIE++N L K++ Q ++ +++ N+
Sbjct: 157 GQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNL 216
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ E+ +R+ K G + S+ ++KD + +++GF F+ Y + A S +++
Sbjct: 217 HESVTEEKLREVFEKFG-ALTSVVVMKDAE--GKSKGFGFVCYEDAEAAGKSVEELDGYD 273
Query: 117 FKLDDNAPTVSWA---DPRNAESSAASQVKA-----------LYVKNLPKDITQDRLKEL 162
K++D A V A R AE A + LY+KNL + +L+EL
Sbjct: 274 -KIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLREL 332
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G IT + G R FV F+ A +A+ + L +LA+ +
Sbjct: 333 FAEFGTITSCRVMRDTAGASRGS-AFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRK 391
Query: 223 ADQKTSGGSNSQKSALNPTYPPHLG-YGM 250
D++ + + + P++G YGM
Sbjct: 392 EDRRLRLQAQFAQRQVAAGGMPNMGPYGM 420
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 102/206 (49%), Gaps = 14/206 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A++AI+ LN + GK I+ +Q L FI N+ +
Sbjct: 74 GYAYVNFQQGNDAARAIDALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDN 133
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D Q Q++G+ F+++ A+ + +K++ L+D
Sbjct: 134 KALYDTFAQFG-NIVSAKVATDLQG--QSKGYGFVQFDTEEGAQSAIEKVNG--MLLNDK 188
Query: 123 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V RN + +YVKNL + +T+++L+E+F G +T VV+ G+
Sbjct: 189 QVYVGPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKS 248
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYE 208
+ +GFV + + +A K+++ + Y+
Sbjct: 249 KG-FGFVCYEDAEAAGKSVEELDGYD 273
>gi|242043858|ref|XP_002459800.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
gi|241923177|gb|EER96321.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
Length = 730
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 20/226 (8%)
Query: 14 FVTFRTKELAS-QA-------IEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
F TF + LAS QA I + ++KGK L + N+ +W +DD+
Sbjct: 217 FFTFASSSLASYQAGLSQVTFIYWYLNFQIKGKACGICKNSENETLHVRNICFDWSKDDL 276
Query: 66 RKAVTKIGP----GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-D 120
K+ P + I L++ P+ +NRG+AF+++ H A + K+ L
Sbjct: 277 ---AEKLEPFKLENLDRINLIEHPEKKGKNRGYAFLDFRTHVDAVAAFVKLQKRDLYLGT 333
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
D +S+++ + + +VK++++ LP +D+++E+F G+I + +
Sbjct: 334 DFRAHISFSNTLSQDDEIMEKVKSVFLDGLPPHWDEDKVREMFGKFGEIDSIQLARNMYT 393
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKY---EIDGQVL-DCSLAKPQ 222
+R +GF+ F R SA+ +K K E G+VL SL +P+
Sbjct: 394 AKRKDFGFIGFTTRQSALDCIKMVNKDGVGEGSGKVLIKASLQRPR 439
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+ +F+ +PR+ E+D+ KA+ + G V + LV+DP + N+GFAF+ +
Sbjct: 113 YEVFVSGLPRDAAEEDVAKALAEAG-DVEEVRLVRDPADQRLNKGFAFVRF 162
>gi|194211413|ref|XP_001495211.2| PREDICTED: nucleolin [Equus caballus]
Length = 705
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------------KCSAAQAKH 49
G++KG A++ F+T+ A + +EE E+ G+ I K S +
Sbjct: 421 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGES 480
Query: 50 R-LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
+ L + N+ N E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 481 KTLVLSNLSYNATEETLQEVFEKAT-------FIKVPQNQNGKSKGYAFIEF---ASFED 530
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 531 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 588
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 589 GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 645
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 514 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 573
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G I +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 574 LSEDTTEETLKESFD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 628
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 629 --EIDGNKVTLDWAKPK 643
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ + +++ ++ +
Sbjct: 275 RKKEMAKQKA----APEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLFAKND 330
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ + AE + + K+ N + P+
Sbjct: 331 LAVVDVRI-------GVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKG 378
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 379 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDALEIRLV----SKDGKSKG-IAYIEFKT 433
Query: 194 RSSAMKALKNTEKYEIDGQVL 214
+ A K L+ + EIDG+ +
Sbjct: 434 EADAEKTLEEKQGTEIDGRSI 454
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 169
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 170 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 224
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 225 VFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 284
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 285 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 190 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 367 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 415
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A++AI+ LN + GK I+ +Q L FI N+ +
Sbjct: 62 GYAYVNFQQGADAARAIDVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDN 121
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ ++ G ++S ++ D Q + +G+ F+++ A+ + K++ L+D
Sbjct: 122 KALYDTFSQFG-NIVSAKVAADGQGVS--KGYGFVQFAEQEAAQQAIDKVNG--MLLNDK 176
Query: 123 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V R + +YVKNL + + +D+LKE+F GK+T VVI K G+
Sbjct: 177 QVYVGPFQRRGERGGGPTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVI--MKDGEG 234
Query: 183 RSR-YGFVHFAERSSAMKALKNTEKYE 208
+S+ +GFV F E +A +A++ + Y+
Sbjct: 235 KSKGFGFVCFEESEAASEAVEKLDGYD 261
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 41/250 (16%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK----------HRLFIGNV 56
G +KGY FV F +E A QAI+++N L K++ Q + + +++ N+
Sbjct: 145 GVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGERGGGPTTFNNVYVKNL 204
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ ED +++ +G + S+ ++KD + +++GF F+ + A + +K+
Sbjct: 205 HESVDEDKLKEVFGAVGK-LTSVVIMKDGE--GKSKGFGFVCFEESEAASEAVEKLDGYD 261
Query: 117 FKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDRLKE 161
K++D A V A + AE A + K LY+KNL + +L+E
Sbjct: 262 -KIEDKAWVVCRAQ-KKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLRE 319
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-----LDC 216
LFA G IT + G R FV F+ A +A+ E++G++ L
Sbjct: 320 LFAEFGTITSCRVMRDASGASRGS-AFVAFSSADEATRAVT-----EMNGKMAGTKPLYV 373
Query: 217 SLAKPQADQK 226
+LA+ + D++
Sbjct: 374 ALAQRKEDRR 383
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 155 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 214
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE D++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 271
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 272 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 331
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 332 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 386
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 387 VALAQRKEERK 397
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 75 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 134
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 135 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 188
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ D LKELF+ GK V +
Sbjct: 189 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP 248
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ E+ G+ + A+ + +++
Sbjct: 249 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQ 295
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 92
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 93 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 145
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + + G + Y FVHF + +A KA++
Sbjct: 146 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE 178
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 132 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 191
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 309 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 357
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 132 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 191
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 309 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 357
>gi|156373168|ref|XP_001629405.1| predicted protein [Nematostella vectensis]
gi|156216405|gb|EDO37342.1| predicted protein [Nematostella vectensis]
Length = 817
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 110/208 (52%), Gaps = 19/208 (9%)
Query: 24 SQAIEELNSCELKGKKIKCSAAQAK----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79
+Q I+++ S E KK C ++ + ++FI N+ + ED +R +K+G V+ +
Sbjct: 573 NQQIDKVRSSEPAAKK-PCGESEEESSDPRKVFISNLLFSITEDHLRDKFSKLGE-VLDV 630
Query: 80 ELVKDPQNANQNRGFAFIEYYNHACAE----YSRQKMS-NPKFKLDDNAPTVSWA-DPRN 133
+VK+ A +++G+A++E+ N + + R+KM P F +P V A +P
Sbjct: 631 RIVKNM--AGRSKGYAYVEFNNESTVQAALAMDREKMEGRPMFI----SPCVDKAKNPTT 684
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+ + L+V NLP D + ++ELF+ HG + +V + + G+ + YG+V + +
Sbjct: 685 FKFPTSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKG-YGYVEYEQ 743
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKP 221
SSA A+ +K E+ G+ + +L+ P
Sbjct: 744 ESSASTAVLTLDKTEVKGRTISVALSNP 771
>gi|324505959|gb|ADY42552.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324526563|gb|ADY48690.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 248
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 8/89 (8%)
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
S+VK LYV+NL + +T+++LKE+FA HG++ + ++ Y F+HF ER A+K
Sbjct: 2 SKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERA--------KKIRDYAFIHFKEREPALK 53
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
A++ ++G ++ SLAKPQ D+K +
Sbjct: 54 AMEALNGTVLEGIAIEISLAKPQGDKKKT 82
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 97 GYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 156
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++ +G+ F+ Y A+ + + ++ L++
Sbjct: 157 KALHDTFAAFG-NILSCKVAQDENGSS--KGYGFVHYETDEAAQQAIKHVNG--MLLNEK 211
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ ++T D +ELF HG +T I +
Sbjct: 212 KVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQ 271
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F +A KA++ ++ GQ L
Sbjct: 272 DGKSRG-FGFVNFTTHEAAAKAVEELNNKDLHGQEL 306
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A QAI+ +N L KK+ K +A
Sbjct: 178 ENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTN 237
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +D+ R+ + G V S + + + ++RGF F+ + H A + +
Sbjct: 238 VYVKNISPEVTDDEFRELFERHG-DVTSSSIAR--EQDGKSRGFGFVNFTTHEAAAKAVE 294
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++N K + + E ++ Q LY+KNL D+ D+
Sbjct: 295 ELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDK 354
Query: 159 LKELFAHHGKIT 170
L+ +FA G IT
Sbjct: 355 LRIMFAEFGPIT 366
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 34 DENGSKGYAFVHFETQEAADKAIEKMNGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 93
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH-----ACA 105
+N+GE+ ++++ ++ G +S+++++D ++ ++RGF F+ Y H A
Sbjct: 94 VYIKNFGEEVDDGNLKELFSQFGK-TLSVKVMRD--SSGKSRGFGFVSYEKHEDANKAVD 150
Query: 106 EYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
E + ++MS K++ A + E + Q LY+KNL I ++
Sbjct: 151 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 210
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F R A KA+ + + L
Sbjct: 211 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLY 265
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 266 VALAQRKEERK 276
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 54/328 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC---------SAAQAKHR---LFI 53
SG++KGY FV F ++E A +AIE+LN L K++ A K R +F+
Sbjct: 149 SGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNNVFV 208
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D+ K + G + SI +++D +++ F F+ + N A + + ++
Sbjct: 209 KNLSETTTEEDLNKTFGEFG-TITSIVVMRD--GDGKSKCFGFVNFENAEDAAKAVEALN 265
Query: 114 NPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQDRL 159
K+DD V A + E++ Q LY+KNL I ++L
Sbjct: 266 GK--KIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKL 323
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 324 KELFSPFGTITSCKVMRDPNGISRGS-GFVAFSTPEEASRALLEMNGKIVVSKPLYVALA 382
Query: 220 KPQADQKT---SGGSNSQKSALNPT-------YPP-------HLGYGMVGGAYGALGAGY 262
+ + D++ + S + A+ P+ YPP + YG A G+
Sbjct: 383 QRKEDRRARLQAQFSQMRPVAMAPSVGPRMPMYPPAGPGLGQQIFYGQAPPAIIPPQPGF 442
Query: 263 VPAGFAQPMVYGRGAAPGGMAMLPMLLP 290
G+ Q +V G PGG M +P
Sbjct: 443 ---GYQQQLV--PGMRPGGAPMPNFFVP 465
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 103/214 (48%), Gaps = 24/214 (11%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + A++A+E LN L G I+ + HR +FI N+ +
Sbjct: 67 GYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYS---HRDPTIRKSGAGNIFIKNLDKA 123
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ DP + Q++G+ F+++ + A+ + +K++ L
Sbjct: 124 IDHKALHDTFSAFG-NILSCKVATDP--SGQSKGYGFVQFDSEEAAQKAIEKLNG--MLL 178
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V + +A +++ ++VKNL + T++ L + F G IT +V+
Sbjct: 179 NDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVV--M 236
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEID 210
+ G +S+ +GFV+F A KA++ +ID
Sbjct: 237 RDGDGKSKCFGFVNFENAEDAAKAVEALNGKKID 270
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 113/229 (49%), Gaps = 21/229 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N ++GK I+ +Q L FI N+ ++
Sbjct: 329 GYAYVNFLHLADAQKALDTMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 388
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M+ KL
Sbjct: 389 KTLYEHFSAFGR-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNG---KLLQG 441
Query: 123 APTV-----SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
S D S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 442 CKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD 501
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ + A+ + +++
Sbjct: 502 SSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQ 549
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 113/236 (47%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N L+G K+ S A
Sbjct: 409 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASEFTN 468
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 469 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 525
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E QV LYVKNL I ++
Sbjct: 526 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEK 585
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G I++V + + GQ + +G + F+ A+KA+ E++G++L
Sbjct: 586 LRKEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDALKAMT-----EMNGRIL 634
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 156 GYAYVNYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 215
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 216 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAAANAIKHVNG--MLLNEK 270
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+P ++T + +ELFA +G +T + +
Sbjct: 271 KVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSD 330
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F +A KA++ + GQ L
Sbjct: 331 EGKSRG-FGFVNFTTHEAASKAVEELNGKDFRGQEL 365
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+ AI+ +N L KK+ K +A
Sbjct: 237 ENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 296
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P +++ R+ K G V S L + + ++RGF F+ + H A + +
Sbjct: 297 VYVKNIPAEVTDEEFRELFAKYG-DVTSSSLARS--DEGKSRGFGFVNFTTHEAASKAVE 353
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAES-----SAASQVKA-------LYVKNLPKDITQDR 158
+++ F+ + + E AA Q KA LY+KNL D+ D+
Sbjct: 354 ELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDK 413
Query: 159 LKELFAHHGKITKVVI 174
L+++F+ +G IT +
Sbjct: 414 LRQMFSEYGPITSAKV 429
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 25/104 (24%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D G+++G+ FV F T E AS+A+EELN + +G+++ AQ KH
Sbjct: 330 DEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQ 389
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 390 EKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGP-ITSAKVMRD 432
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 85/185 (45%), Gaps = 13/185 (7%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y A
Sbjct: 111 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAV-TRRSLGYAYVNYNATADG 168
Query: 106 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + + ++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 169 EKALEDLN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 221
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G I + + G + YGFVH+ +A A+K+ ++ + + P+
Sbjct: 222 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPK 280
Query: 223 ADQKT 227
D+++
Sbjct: 281 KDRQS 285
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGK-MLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 114/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N ++G+ I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLHVADAQRALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + RG+ F+ + N A A+ + ++M+ K D
Sbjct: 112 KTLYEHFSVFGK-ILSSKVMCDDQGS---RGYGFVHFQNQAAADRAIEEMNGVLLK-DFR 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + R+ E+ + AS+ +Y+KN ++ ++LKE F+H+GKI V +
Sbjct: 167 LFVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A +A+ EI GQ + A+ +A+++
Sbjct: 227 GKSKG-FGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQ 272
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 42/239 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D ++GY FV F+ + A +AIEE+N LK ++ + + Q K F
Sbjct: 132 DDQGSRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQNKASEFTN 191
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS-- 108
+N+G+ DD +++ + G ++S++++ D ++ +++GF F+ + H A+ +
Sbjct: 192 IYIKNFGDEMDDEKLKEFFSHYGK-IVSVKVMTD--SSGKSKGFGFVSFDTHEAAKRAVD 248
Query: 109 ----RQKMSNPKF------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
R+ F K + A + R E S + +YVKNL + I +++
Sbjct: 249 IVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQE--RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G I +V K QE RSR +G + F+ A +A+ E++G++L
Sbjct: 309 LRKAFSSFGSIIRV-----KVMQEEGRSRGFGLICFSSPEEAARAMA-----EMNGRLL 357
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 42/259 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKHR--- 50
++G +KG+ FV F T+E A +A+ ++N L GKK+ + +A+ R
Sbjct: 135 ETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTN 194
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N W +D +R K G V+S +++ D + +RGF F+ Y A + +
Sbjct: 195 IYVKNFGDKWDDDKLRDFFEKYG-KVVSAKVMTD--DMGHSRGFGFVSYEEPDSAGKACE 251
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDIT 155
+M++ ++DD + AE A + K LYVKNL I
Sbjct: 252 EMND--MEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTID 309
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQ 212
++ L++ F+ G IT +K E R +GFV F+ A KA+ + +
Sbjct: 310 EEILRKEFSQFGTITS-----SKVMTENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSK 364
Query: 213 VLDCSLAKPQADQKTSGGS 231
L +LA+ + D+K S
Sbjct: 365 PLYVALAQRKEDRKAQLAS 383
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 18/212 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 54 GYAYVNFQQPADAERALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 113
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ +D ++GF F+ + A+ + K++ L+
Sbjct: 114 KAIYDTFSAFG-NILSCKVAQD--ETGSSKGFGFVHFETQEAADEAMAKVNG--MMLNGK 168
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR+ +A + + +YVKN D+L++ F +GK+ +
Sbjct: 169 KVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDD 228
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
G R +GFV + E SA KA + E+D
Sbjct: 229 MGHSRG-FGFVSYEEPDSAGKACEEMNDMEVD 259
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GYA++ F+ A +A++ +N +KG+ I+ + HR +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENS 109
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++V N + +RGF F+ + H A+ + M+ L
Sbjct: 110 IDNKALYDTFSTFG-SILSSKVV---YNEHGSRGFGFVHFETHEAAQKAINTMNG--MLL 163
Query: 120 DDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
+D V R AE A A +YVKNL ++ + RL++LF+ G + V +
Sbjct: 164 NDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVM 223
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
GQ R +GFV+F + A KA+ + E+ GQ+L A+ +A++++
Sbjct: 224 RDSNGQSRG-FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 41/249 (16%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR--------------LFIG 54
++G+ FV F T E A +AI +N L +K+ +++ + +++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ N E ++ ++ G + S+++++D Q+RGF F+ + H A+ + M+
Sbjct: 197 NLHANVDEQRLQDLFSQFG-NMQSVKVMRDSNG--QSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQDRLK 160
+ + V A R S Q+K LYVKNL I +RLK
Sbjct: 254 KE--VSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query: 161 ELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
E+F+ +G VI AK E S +GFV F+ A KA+ + + L +
Sbjct: 312 EVFSTYG-----VITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 218 LAKPQADQK 226
LA+ + ++K
Sbjct: 367 LAQRKEERK 375
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 27/239 (11%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-------------- 49
+++G+ +G+AFV + AIE+LN E+ G+ I S + K
Sbjct: 132 RETGKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESLPKDQVAEKKKKFQGRKK 191
Query: 50 -----RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 104
++++GN+ + +D++ A + G + V NA RGF FI+ +
Sbjct: 192 RDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNA---RGFGFIQMSDEDS 248
Query: 105 AEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELF 163
+ + + M+ +F D V+ + P+ ++AA + LYV NL + L+ELF
Sbjct: 249 LK-AIEGMNGVEF--DGRTLNVNKSLPKGQRPAAAAPKETKLYVGNLSWGTEEGALRELF 305
Query: 164 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
+G + IP + + + FV A++A T+ YE+DG++L + A+P+
Sbjct: 306 GEYGSVIDCYIPTDRETGQHRGFAFVTMGP-DDALRAADETDGYELDGRILRVNEAQPK 363
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 24/209 (11%)
Query: 71 KIGPGVISIELVKDPQNANQNRGFAFIEYYNH-----ACAEYSRQKMSNPKFKLDDNAPT 125
K G G + + L ++ + RGFAF+ N A + + +++ + ++ P
Sbjct: 120 KRGGGSVDVPLSRE---TGKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESLPK 176
Query: 126 VSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
A+ + + + +YV NL D T + LK F G + +P G R
Sbjct: 177 DQVAEKKKKFQGRKKRDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNAR 236
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 243
+GF+ ++ S +KA++ E DG+ L+ + + P+ + + K Y
Sbjct: 237 G-FGFIQMSDEDS-LKAIEGMNGVEFDGRTLNVNKSLPKGQRPAAAAPKETK-----LYV 289
Query: 244 PHLGYGMVGGA-------YGALGAGYVPA 265
+L +G GA YG++ Y+P
Sbjct: 290 GNLSWGTEEGALRELFGEYGSVIDCYIPT 318
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +K + + +Q + +FI N+
Sbjct: 86 GYAYVNYLNTSDGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDN 145
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D +++G+ F+ Y AE + + ++ L+D
Sbjct: 146 KALHDTFAAFG-NVLSCKVATDEHG--RSKGYGFVHYETGEAAETAIKAVNG--MLLNDK 200
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + R S ++KA LY+KNL +TQD +E+F +G +T ++ +
Sbjct: 201 KVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDE 260
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV++ A A+ +I G+ L S A+ +A+++
Sbjct: 261 EGNSKG-FGFVNYEHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAERE 307
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 32/243 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E A AI+ +N L KK+ K +A+
Sbjct: 167 EHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFTN 226
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L+I N+ + +D+ + K G +I V + N+ +GF F+ Y +H A+ +
Sbjct: 227 LYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNS---KGFGFVNYEHHEEAQSAVD 283
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+ + K + + E + Q LY+KNL D+ ++
Sbjct: 284 ALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEK 343
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
L+ F G IT + + + S+ +GFV F+ A KA+ I + L S
Sbjct: 344 LRAEFEPFGTITSCKV--MRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVS 401
Query: 218 LAK 220
LA+
Sbjct: 402 LAQ 404
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A +A+++ +I+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQ 273
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ DP + +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYG-KTLSVKVMTDP--SGKSKGFGFVSFEKHEDANQAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 DMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 27/238 (11%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKHRLFIG 54
+G +KGY FV + +E A AIE++N L+GKK+ Q +F+
Sbjct: 159 AGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTERPVDKEQHYTNVFVK 218
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ N ++++ K + G V S ++KD A +++GF FI + + A + ++
Sbjct: 219 NLSENLTDEEVEKMFNEHG-MVTSFAIMKD--EAGKSKGFGFINFEDAEGAHAAVTALNG 275
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
+ K + A D E A Q LYVKNL ++ D+L+
Sbjct: 276 KEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAE 335
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
FA HG IT + G+ + +GFV ++ A +A+ + G+ + +LA+
Sbjct: 336 FAPHGTITSAKVMKDSAGKSKG-FGFVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQ 392
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ R+ E + + ++IGP V SI + +D ++ G+A++ Y + A + +
Sbjct: 26 LYVGDLDRDVTEAQLFEIFSQIGP-VASIRVCRDAVT-RRSLGYAYVNYNSALDAAAAER 83
Query: 111 KMSNPKFKL--------DDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRL 159
+ + +D+ P + W+ DP + S V +++KNL KDI L
Sbjct: 84 AIEALNYTSVIPGKEGGEDSKPMRIMWSHRDP----AFRKSGVGNIFIKNLDKDIDNKAL 139
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
+ F G I + G + YGFVH+ + +A A++ ++G+
Sbjct: 140 HDTFTAFGTILSCKVATDLAGNSKG-YGFVHYEKEEAAQLAIEKVNGMLLEGK 191
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 27/119 (22%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK---------------- 48
++G++KG+ F+ F E A A+ LN E+ GK++ C AQ K
Sbjct: 248 EAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQ 307
Query: 49 --------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
L++ N+ +D +R G + S +++KD +A +++GF F+ Y
Sbjct: 308 ERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHG-TITSAKVMKD--SAGKSKGFGFVCY 363
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQ 245
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+QAI+ +N+ L KK+ K +A
Sbjct: 188 ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 247
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +++ R K G V S L +D + ++RGF F+ + H CA + +
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYG-DVTSSSLARDSE--GKSRGFGFVNFTTHECAAKAVE 304
Query: 111 KMSNPKFKLDD----NAPTVSWADPRNAESSAASQVKA--------LYVKNLPKDITQDR 158
+++ +F+ D A + +S A++++ LY+KNL DI D+
Sbjct: 305 ELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDK 364
Query: 159 LKELFAHHGKITKVVI 174
L+++F+ +G IT +
Sbjct: 365 LRQMFSEYGPITSAKV 380
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 107 GYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 166
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++N L++
Sbjct: 167 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNN--MLLNEK 221
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+ + T + ++LFA +G +T +
Sbjct: 222 KVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS 281
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F A KA++ E GQ L
Sbjct: 282 EGKSRG-FGFVNFTTHECAAKAVEELNGKEFRGQDL 316
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 26/106 (24%)
Query: 4 KDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
+DS G+++G+ FV F T E A++A+EELN E +G+ + AQ KH
Sbjct: 279 RDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAA 338
Query: 51 ------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 339 RLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGP-ITSAKVMRD 383
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y + +
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRD-TITRRSLGYAYVNYNSTSDG 119
Query: 106 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 120 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 172
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 173 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPK 231
Query: 223 ADQKT 227
D+++
Sbjct: 232 KDRQS 236
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GYA++ F+ A +A++ +N +KG+ I+ + HR +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENS 109
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++V N + +RGF F+ + H A+ + M+ L
Sbjct: 110 IDNKALYDTFSTFG-SILSSKVVY---NEHGSRGFGFVHFETHEAAQKAINTMNG--MLL 163
Query: 120 DDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
+D V R AE A A +YVKNL ++ + RL++LF+ G + V +
Sbjct: 164 NDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVM 223
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
GQ R +GFV+F + A KA+ + E+ GQ+L A+ +A++++
Sbjct: 224 RDSNGQSRG-FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 41/249 (16%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR--------------LFIG 54
++G+ FV F T E A +AI +N L +K+ +++ + +++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ N E ++ ++ G + S+++++D + Q+RGF F+ + H A+ + M+
Sbjct: 197 NLHANVDEQRLQDLFSQFG-NMQSVKVMRD--SNGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQDRLK 160
+ + V A R S Q+K LYVKNL I +RLK
Sbjct: 254 KE--VSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query: 161 ELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
E+F+ +G VI AK E S +GFV F+ A KA+ + + L +
Sbjct: 312 EVFSTYG-----VITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 218 LAKPQADQK 226
LA+ + ++K
Sbjct: 367 LAQRKEERK 375
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GYA++ F+ A +A++ +N +KG+ I+ + HR +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENS 109
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++V N + +RGF F+ + H A+ + M+ L
Sbjct: 110 IDNKALYDTFSTFG-SILSSKVVY---NEHGSRGFGFVHFETHEAAQKAINTMNG--MLL 163
Query: 120 DDNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
+D V R AE A A +YVKNL ++ + RL++LF+ G + V +
Sbjct: 164 NDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVM 223
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
GQ R +GFV+F + A KA+ + E+ GQ+L A+ +A++++
Sbjct: 224 RDSNGQSRG-FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 41/249 (16%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR--------------LFIG 54
++G+ FV F T E A +AI +N L +K+ +++ + +++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ N E ++ ++ G + S+++++D + Q+RGF F+ + H A+ + M+
Sbjct: 197 NLHANVDEQRLQDLFSQFG-NMQSVKVMRD--SNGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQDRLK 160
+ + V A R S Q+K LYVKNL I +RLK
Sbjct: 254 KE--VSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query: 161 ELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
E+F+ +G IT AK E S +GFV F+ A KA+ + + L +
Sbjct: 312 EVFSTYGVITS-----AKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 218 LAKPQADQK 226
LA+ + ++K
Sbjct: 367 LAQRKEERK 375
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77
+ +E A AI++ + E + + A+ LF+GN+ N ED +R+ G ++
Sbjct: 209 KAEEAAEPAIKKTKTVE------EPAGAEGIKNLFVGNLSWNIDEDWLRREFEGFGE-IV 261
Query: 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137
++ D + + +GF ++E+ A A ++ +M +++LD V ++ PR +
Sbjct: 262 GCRIITD-RETGRGKGFGYVEFATSADAAKAQAEMH--QYELDGRPLNVDFSTPRQKPDA 318
Query: 138 AASQVKA-------------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 184
+ +A L++ NL D T D ++E+FA +G IT+V +P +
Sbjct: 319 GKTNDRANKYGDKRSAPSNTLFLGNLSFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIK 378
Query: 185 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+G+V F + A AL +I G+ + A P+ D
Sbjct: 379 GFGYVDFGSQEEATAALDALNGQDIAGRNIRIDYAAPRED 418
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKE F+ +GK V +
Sbjct: 167 KVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F A KA+ + +++G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQ 273
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 54/373 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----KCSAAQ-----AKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ KC + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ +K G +S++++ DP + +++GF F+ + H A +
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYG-KTLSVKVMTDP--SGKSKGFGFVSFERHEDANKAVD 249
Query: 111 KMS----NPKF--------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
M+ N K K++ A + E + Q LY+KNL I ++
Sbjct: 250 DMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQKTSGGSN-SQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYG 274
+LA+ + ++K + Q+ A P + A G VP ++P Y
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQTQSRPTYY- 423
Query: 275 RGAAPGGMAML---PMLLPDGR------IGYVLQQPGVQQ---HNPPPQPRSGRGGAGSS 322
AP MA + P GR + L+ G +Q H PP + RG G +
Sbjct: 424 ---APNHMAQIRPGPRWQQTGRPQGFQPMPNTLRHSGPRQSLRHMPPSNAQGTRGIPGVT 480
Query: 323 SSGGRRSTDNGRG 335
G S+ G
Sbjct: 481 QRVGVSSSTQTMG 493
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 184 EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTN 243
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +DD R K G V S L +D Q ++RGF F+ + +H A + +
Sbjct: 244 IYVKNIQLDVTDDDFRALFEKFG-HVTSSSLARD-QETGKSRGFGFVNFTSHEDASKAVE 301
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAES-----SAASQVKA-------LYVKNLPKDITQDR 158
+++ +F + + E AA Q KA LY+KNL ++ D+
Sbjct: 302 ELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDK 361
Query: 159 LKELFAHHGKITKVVI 174
L++LF+ G IT +
Sbjct: 362 LRQLFSEFGPITSAKV 377
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T +A++ELN +KG+ + +Q + +FI N+
Sbjct: 103 GYAYVNYNTTSDGEKALDELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 162
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L++
Sbjct: 163 KALHDTFAAFG-NILSCKVAQDEHG--NSKGYGFVHYETDEAASQAIKHVNG--MLLNEK 217
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T D + LF G +T + +
Sbjct: 218 KVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQ 277
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV+F A KA++ + E GQ L
Sbjct: 278 ETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNL 313
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 25/107 (23%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR----------- 50
+ +++G+++G+ FV F + E AS+A+EELN E G+ + AQ KH
Sbjct: 275 RDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEA 334
Query: 51 -------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ +D +R+ ++ GP + S +++++
Sbjct: 335 ARQEKASKYQGVNLYIKNLDDEVDDDKLRQLFSEFGP-ITSAKVMRE 380
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +K + + +Q + +FI N+
Sbjct: 101 GYAYVNYNSTADGEKALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDN 160
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A+ + + ++ L++
Sbjct: 161 KALHDTFAAFG-NILSCKVAQDEHG--NSKGYGFVHYETDEAAQQAIKHVNG--MLLNEK 215
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +Y+KNL D+T D ++LF +G +T I +
Sbjct: 216 KVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQ 275
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GF++F SA KA++ EI GQ L
Sbjct: 276 ETGKSRGFGFINFTTHESAAKAVEELNSREIHGQEL 311
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E A QAI+ +N L KK+ K +A +
Sbjct: 182 EHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTN 241
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH-----ACA 105
++I N+ + +D+ RK + G V S + +D Q ++RGF FI + H A
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYG-AVTSSTIARD-QETGKSRGFGFINFTTHESAAKAVE 299
Query: 106 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA-------LYVKNLPKDITQDR 158
E + +++ + + + AA Q KA LY+KNL ++ ++
Sbjct: 300 ELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEK 359
Query: 159 LKELFAHHGKITKVVI 174
L+ELFA +G IT +
Sbjct: 360 LRELFAPYGPITSAKV 375
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 50
+ +++G+++G+ F+ F T E A++A+EELNS E+ G+++ AQ KH
Sbjct: 273 RDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHE 321
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 86 GYAYVNYLNAADGERALEQLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDN 145
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D +++G+ F+ Y AE + + ++ L+D
Sbjct: 146 KALHDTFAAFG-NVLSCKVATDEH--GRSKGYGFVHYETAEAAETAIKAVNG--MLLNDK 200
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + R S ++KA +YVKN ++T++ LF G +T VI
Sbjct: 201 KVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDD 260
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV+F A KA++ + G+ L S A+ +A+++
Sbjct: 261 EGRSRG-FGFVNFEVHDEAQKAVEGLHDLDFKGKKLFVSRAQKKAERE 307
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 34/244 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E A AI+ +N L KK+ K +A+
Sbjct: 167 EHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQFTN 226
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N E++ + G V S + +D + ++RGF F+ + H A+ + +
Sbjct: 227 IYVKNFDPEVTEEEFMALFQQFG-SVTSAVIQRD--DEGRSRGFGFVNFEVHDEAQKAVE 283
Query: 111 KMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQ 156
+ + FK VS A + E + Q LY+KNL D+
Sbjct: 284 GLHDLDFK--GKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDD 341
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
DRL+ F G IT + + G + +GFV F+ A KA+ I + L
Sbjct: 342 DRLRTEFEPFGSITSAKVMRDEKGTSKG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYV 400
Query: 217 SLAK 220
SLA+
Sbjct: 401 SLAQ 404
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 60/349 (17%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFIG 54
G++KGY FV F +E A AI+ELN + KK+ + +++
Sbjct: 130 GQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVK 189
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N + ++D+ + + G + S ++KD ++ GF E + A A R +
Sbjct: 190 NFSETYTDEDLEQLFSTYGT-ITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTT 248
Query: 115 PKFKLDDNAPTVSWAD---PRNAESSAASQVK-----------ALYVKNLPKDITQDRLK 160
DD V A R AE A +++ LYVKNL +I D+LK
Sbjct: 249 VN---DDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDKLK 305
Query: 161 ELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD-- 215
ELF+ G IT KV++ P RS+ YGFV F+ +A +AL +E++G+++
Sbjct: 306 ELFSEFGTITSCKVMLEP----NGRSKGYGFVAFSAPRNANRAL-----HEMNGKMIGRR 356
Query: 216 -CSLAKPQADQKTSGGSNSQKSALNPTYP-PHLGYGMVGGAYGALGAGYVPAGFAQPMVY 273
+A Q ++ +Q S ++ Y HL G+ GA P Q + Y
Sbjct: 357 PLYVAVAQRKEERKALLEAQFSQMHALYAITHLPTGIPVYHPGA------PRHGPQALHY 410
Query: 274 GRGA------APGGMAMLPMLLPDGRIGYV--LQQPGVQQHNPPPQPRS 314
G+GA P G LLP G P +Q PP+ R+
Sbjct: 411 GQGAPSLVAPQPTGYGFQQQLLPGMHPGVAPNFIMPYHRQRQVPPRLRN 459
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 17/233 (7%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNV 56
++ + GYA+V F + A+ A+E LN L GK I+ + +FI N+
Sbjct: 41 ETNRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNL 100
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ + G V+S ++ D + Q++G+ F+++ N A+ + ++++
Sbjct: 101 DISIDNKTLHDTFAAFG-FVLSSKVAVD--SIGQSKGYGFVQFDNEESAQNAIKELNG-- 155
Query: 117 FKLDDNAPTVSWADPRN--AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 174
++D V R A+ + + +YVKN + T + L++LF+ +G IT V+
Sbjct: 156 MLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVV 215
Query: 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKPQADQK 226
G+ R +GFV+F SA+ A++ + D +VL A+ +A+++
Sbjct: 216 MKDTDGKSRC-FGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAERE 267
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ RN E + + ++GP + SI + +D N++ G+A++ + N A + +
Sbjct: 8 LYVGDLERNVDEAQLFQLFARVGP-IFSIRVCRD--ETNRSLGYAYVNFVNPQDAANAME 64
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ S DP +S A+ +++KNL I L + FA G +
Sbjct: 65 HLNFTPLNGKSIRVMFSNRDPSIRKSGYAN----VFIKNLDISIDNKTLHDTFAAFGFVL 120
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
+ GQ + YGFV F SA A+K E++G +++
Sbjct: 121 SSKVAVDSIGQSKG-YGFVQFDNEESAQNAIK-----ELNGMLIN 159
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 18/221 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S ++ GYA+V + E +AIEELN ++G+ + +Q +FI N+
Sbjct: 104 SKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLH 163
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + G ++S+++ D + Q++ F F+ Y A+ + + ++
Sbjct: 164 PAIDNKALHDTFSAFGK-ILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVNG--M 218
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+D V + S ++KA +YVKN+ T+ +ELFA GKIT +
Sbjct: 219 LLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIY 278
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G+ + +GFV+F E +A KA++ EI+GQ +
Sbjct: 279 LEKDAEGKSKG-FGFVNFEEHEAAAKAVEELNDKEINGQKI 318
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
D G++K + FV + T+E A AIE +N L +++ K +A +
Sbjct: 190 DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E + + G + SI L KD + +++GF F+ + H A + +
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGK-ITSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++++ + K + + E + Q L+VKNL + I ++
Sbjct: 307 ELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+E F G IT + G+ + +GFV F+ A KA+ + ++G+ L +L
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKG-FGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGR 275
A+ + + ++S L M A AG +P F PM YG+
Sbjct: 426 AQRK---------DVRRSQLEQQIQARNQMRMQNAA----AAGGLPGQFMPPMFYGQ 469
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AIE+LN +KG+ + +Q +FI N+ +
Sbjct: 85 GYAYVNFNDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDN 144
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++GF F+ + N A + ++ +
Sbjct: 145 KTLYETFSVFG-NILSCKIAND--ETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEV 201
Query: 123 --APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
AP VS D ++ A + +YVKNL + T++ + LF +G IT V + G
Sbjct: 202 YVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEG 261
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ R +GFV F A+KA++ E GQ L
Sbjct: 262 KSRG-FGFVDFENHEDAVKAVEALNDTEYKGQTL 294
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 43/306 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G++KG+ FV F +E A +AI+ +N L G+++ K A+A
Sbjct: 166 ETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTN 225
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ E+D G + S+ L KD + ++RGF F+++ NH A + +
Sbjct: 226 VYVKNLDLEATEEDFENLFKPYGT-ITSVALEKDAEG--KSRGFGFVDFENHEDAVKAVE 282
Query: 111 KMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQ 156
+++ ++K V A + E A Q L++KNL I
Sbjct: 283 ALNDTEYK--GQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDD 340
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++LKE FA G IT + + G+ + +GFV F+ A +A+ + + G+ L
Sbjct: 341 EKLKEEFAPFGTITSARVMRTENGKSKG-FGFVCFSTPEEATRAITEKNQQIVAGKPLYV 399
Query: 217 SLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
++A+ + +++ Q A N + Y A A AG +P F PM YG
Sbjct: 400 AIAQRKDVRRSQLAQQIQ--ARN-----QMRYQQATAAAAAAAAG-IPGQFMPPMFYGV- 450
Query: 277 AAPGGM 282
P GM
Sbjct: 451 VPPRGM 456
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ DP + +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYG-KTLSVKVMTDP--SGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 97/215 (45%), Gaps = 16/215 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
I + + G + Y FVHF + +A +A++ ++ + + K + +++
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 228 SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGY 262
G+ +++ Y + G M G L + Y
Sbjct: 182 ELGAKAKE--FTNVYIKNFGDDMDDGRLKELFSKY 214
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 29/218 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK----------HRLFIGN 55
+G +KGY FV F + A +AI+ +N +++GK + + Q + +F+ N
Sbjct: 150 NGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPRARTLYTNVFVKN 209
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA----CAEY-SRQ 110
+P + G+D++ K T+ G + S ++KD + ++GF FI + + C EY + +
Sbjct: 210 LPADIGDDELGKMATEHGE-ITSAVVMKDDKGG--SKGFGFINFKDAESAAKCVEYLNER 266
Query: 111 KMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLP-KDITQDRLKEL 162
+MS K + A A+ E Q LYVKNL +++ D L+EL
Sbjct: 267 EMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDDALREL 326
Query: 163 FAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMK 199
FA+ G IT + K G +S+ +GFV F A +
Sbjct: 327 FANSGTITSCKV--MKDGSGKSKGFGFVCFTSHDEATR 362
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 11 GYAFVTFRTK---ELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNV 56
GYA+V + + + A +A+E LN + GK ++ + HR +FI N+
Sbjct: 65 GYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWS---HRDPSARKSGVGNIFIKNL 121
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ + + G ++S ++ D + +G+ F+ + + A A+ + Q ++ K
Sbjct: 122 DKTIDAKALHDTFSAFGK-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKK 178
Query: 117 F--KLDDNAPTVSWAD-PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K+ AP AD PR A + ++VKNLP DI D L ++ HG+IT V
Sbjct: 179 IEGKIVYVAPFQKRADRPR-----ARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAV 233
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G + +GF++F + SA K ++ + E+ G+ L
Sbjct: 234 VMKDDKGGSKG-FGFINFKDAESAAKCVEYLNEREMSGKTL 273
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D G +KG+ F+ F+ E A++ +E LN E+ GK + AQ K
Sbjct: 238 DKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQ 297
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100
L++ N+ +DD + + + S +++KD + +++GF F+ +
Sbjct: 298 ERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKD--GSGKSKGFGFVCFT 355
Query: 101 NH 102
+H
Sbjct: 356 SH 357
>gi|31455187|gb|AAH06494.3| NCL protein [Homo sapiens]
gi|31455191|gb|AAH06516.3| NCL protein [Homo sapiens]
gi|31455242|gb|AAH02343.3| NCL protein [Homo sapiens]
Length = 482
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 198 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 257
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 258 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 314
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 315 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 372
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 373 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 422
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 291 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 350
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 351 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 405
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 406 --EIDGNKVTLDWAKPK 420
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F A +A++ LN ++GK + +Q +FI N+ +
Sbjct: 87 GYAYVNFHAAVDAERALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDN 146
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ Y AE + K++ ++
Sbjct: 147 KALLDTFSAFG-NILSCKVVTDE---NGSKGYGFVHYETQEAAETAIAKVNG--MVINGK 200
Query: 123 APTVSWADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V PR ++ ++VKNLP+D T L ++F+ GKIT VVI +
Sbjct: 201 QVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSD 260
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ +GFV + + A A+ E+ G+ L + A+ +A+++
Sbjct: 261 DDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAERE 307
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 33/235 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------L 51
D +KGY FV + T+E A AI ++N + GK++ + +
Sbjct: 167 DENGSKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFTNV 226
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
F+ N+P + + + +K G + S+ ++K + ++++GF F+ Y A+ +
Sbjct: 227 FVKNLPEDTTDAALNDMFSKFGK-ITSVVIMKSSDD-DKSKGFGFVCYEKVEDAQAAVNA 284
Query: 112 MSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159
++ + K + A D E Q LYVKNL I +D++
Sbjct: 285 LNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKI 344
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ FA G IT V I + G+ R +GF+ F+ A KA+ E++GQ +
Sbjct: 345 RTEFAPFGTITSVKIMRDEKGKSRG-FGFICFSSAEEATKAVT-----EMNGQTI 393
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L G+K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL DI +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKAFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 19/231 (8%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNW 60
+ YA+V F+ + A A++ +N +KGK ++ +Q L F+ N+ ++
Sbjct: 51 SSNYAYVNFQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSI 110
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ V+ G ++S +V D N ++G+ F+ + H AE + +KM+ L+
Sbjct: 111 NNKALYDTVSAFG-NILSCNVVCD---ENGSKGYGFVHFETHEAAERAIEKMNG--MLLN 164
Query: 121 DNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
V R AE A A + +Y+KN +D+ +RLK+LF G V +
Sbjct: 165 GRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 225 DESGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWAD---PRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGK-MLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKIT 170
L++ F+ +G IT
Sbjct: 310 LRKEFSPYGVIT 321
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ DP + +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYG-KTLSVKVMTDP--SGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 97/215 (45%), Gaps = 16/215 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
I + + G + Y FVHF + +A +A++ ++ + + K + +++
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 228 SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGY 262
G+ +++ Y + G M G L + Y
Sbjct: 182 ELGAKAKE--FTNVYIKNFGDDMDDGRLKELFSKY 214
>gi|355565264|gb|EHH21753.1| hypothetical protein EGK_04889, partial [Macaca mulatta]
Length = 705
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 421 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 480
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 481 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 537
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 538 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 595
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + TE EIDG + AKP+ +
Sbjct: 596 VTDRETGSSKG-FGFVDFNSEEDAKAAKEATEDGEIDGNKVTLDWAKPKGE 645
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 514 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 573
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ +
Sbjct: 574 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEATEDG 628
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 629 --EIDGNKVTLDWAKPK 643
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 275 RKKEMAKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 330
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 331 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 378
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 379 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 433
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNS 233
+ A K + + EIDG+ + + +Q GG NS
Sbjct: 434 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 474
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ RLKELF+ +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ +K G +S++++ DP + +++GF F+ + H A + +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYG-KTLSVKVMTDP--SGKSKGFGFVSFEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 97/215 (45%), Gaps = 16/215 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
I + + G + Y FVHF + +A +A++ ++ + + K + +++
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 228 SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGY 262
G+ +++ Y + G M G L + Y
Sbjct: 182 ELGAKAKE--FTNVYIKNFGDDMDDGRLKELFSKY 214
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 45/324 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEEL---NSCELKGKKIKCSAAQAKH-RLFIGNVPRNWGE 62
G +KGY FV ++T E A AI+ + + K ++ K + K +++ N+ E
Sbjct: 201 GNSKGYGFVHYKTSESAEAAIKHVYVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEISE 260
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + K G V S+ L D ++RGF F+ Y NH A + +++ + ++K D
Sbjct: 261 AEFEELFKKFG-NVTSLSLSVDENG--KSRGFGFVNYENHEDAARAVEELHDTEYK--DR 315
Query: 123 APTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQDRLKELFAHHGK 168
V A ++ Q K L+VKNL DI +RL++ F+ +G
Sbjct: 316 KLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGT 375
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
IT I G+ + +GFV F+ A KA+ + + G+ L +LA+ + +++
Sbjct: 376 ITSAKIMVDDNGKSKG-FGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQ 434
Query: 229 GGSN--------SQKSALNPTYPPHLGYGMVGG--AYGALGAGYVPAGFAQPMVYGRGAA 278
S Q+ A P YGM G YG G++PAG PM RG
Sbjct: 435 LESQINARNQLRIQQQAAAAGMSPQ--YGMPGAPMFYGQGPTGFMPAG---PMT-DRGMP 488
Query: 279 PGGMAMLPMLLPDGRIGYVLQQPG 302
AM+P R +V QQ G
Sbjct: 489 FPQPAMVP-----SRPRWVPQQSG 507
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 27/119 (22%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G+++G+ FV + E A++A+EEL+ E K +K+ AQ KH
Sbjct: 282 ENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKL 341
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
LF+ N+ + ++ +R+ + G + S +++ D + +++GF F+ +
Sbjct: 342 DKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGT-ITSAKIMVD--DNGKSKGFGFVCF 397
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 130/312 (41%), Gaps = 40/312 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
DSG +KGY FV + + E A AI+ +N L KK+ ++
Sbjct: 197 DSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSHFTN 256
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ N+ GE++ ++ GP I+ +++ + N ++GF F+ + NH A+ + +
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGP--ITSAVIQKDEEGN-SKGFGFVNFENHEDAQRAVE 313
Query: 111 KMSN------PKF------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++ N P F K + + E + Q LY+KNL D+ ++
Sbjct: 314 ELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEK 373
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + + G + +GFV F+ A +A+ + + L +L
Sbjct: 374 LRAEFEPFGTITSCKVMRDEKGTSKG-FGFVCFSSPDEATRAMSEMNNKIVGTKPLYVAL 432
Query: 219 A------KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMV 272
A K Q + + + +N + A P++ YG Y AGY P Q V
Sbjct: 433 AQRKDVRKQQLESQIAQRNNQLRLAAAQGI-PNMPYGAAPMFYQPAAAGYPP---GQRPV 488
Query: 273 YGRGAAPGGMAM 284
G APG M
Sbjct: 489 MGYPPAPGPARM 500
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+++LN +++GK + +Q + +FI N+ +
Sbjct: 116 GYAYVNYLNYNDGERALDQLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDN 175
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D ++ ++G+ F+ Y ++ AE + + ++ L+D
Sbjct: 176 KALHDTFAAFG-TVLSCKVATD--DSGLSKGYGFVHYDSNEAAEAAIKAVNG--MLLNDK 230
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S ++K+ LYVKNL ++ ++ + LF+ G IT VI +
Sbjct: 231 KVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDE 290
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV+F A +A++ + EI G+ + A+ +++++
Sbjct: 291 EGNSKG-FGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSERE 337
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+++ M+ L+D+
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQHAINTMNG--MLLNDH 166
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R + A + +YVKNL D+ + L+ELF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDS 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQ 273
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 133/334 (39%), Gaps = 61/334 (18%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A AI +N L K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAMEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E +++ ++ G ++S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFG-KMLSVKVMRD--SSGHSRGFGFVNFETHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I ++
Sbjct: 250 HMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGMITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA 278
A+ + + +K+ L Y L ALG+ ++ F QP Y A
Sbjct: 368 AQRKEE---------RKAILTNQYMQRL------STMRALGSPFL-GSFQQPTSYFLPAV 411
Query: 279 PGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQP 312
P P G+ Y PPPQP
Sbjct: 412 PQ---------PPGQAAYY-----GSSSMPPPQP 431
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 2/199 (1%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM-RKA 68
KG+AF F A A +L + +KGK L + N+ +W ++D+ K
Sbjct: 144 KGFAFARFAEVWQARWAANDLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKL 203
Query: 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVS 127
T + I L++ P +NRG+AF+++ +H A K+ L D +S
Sbjct: 204 KTFELENLEDINLIEHPDRKGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQIS 263
Query: 128 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187
+++ + + +VK++++ LP +D ++E F G+I + + +R +G
Sbjct: 264 FSNTISQDDKVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFG 323
Query: 188 FVHFAERSSAMKALKNTEK 206
F+ F R +A+ + K
Sbjct: 324 FISFTTRQAALGCIDMVNK 342
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 19/217 (8%)
Query: 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107
++ +F+ +PR EDD+ A+T+ G V + LV+DP N+GFAF + A +
Sbjct: 101 EYEVFVFGLPREAMEDDVAAALTEAGE-VEEVRLVRDPAQPQLNKGFAFARFAEVWQARW 159
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ----DRLKELF 163
+ + K + + + L+++N+ D ++ ++LK
Sbjct: 160 AANDLRTAMIK------------GKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFE 207
Query: 164 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAKPQ 222
+ + ++ P + G+ R Y F+ F+ A+ +K ++ G + ++
Sbjct: 208 LENLEDINLIEHPDRKGRNRG-YAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQISFSN 266
Query: 223 ADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 259
+ KS PPH V +G G
Sbjct: 267 TISQDDKVMEKVKSVFLDGLPPHWDEDDVREKFGKFG 303
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 117/265 (44%), Gaps = 37/265 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS-----------AAQAKH-RLF 52
+ G++KGY FV F +E A+ AIE+LN + K+I AK+ L+
Sbjct: 135 EDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKYTNLY 194
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ + E +++ + G +IS+ + KD ++GFAF+ Y N A+ + + M
Sbjct: 195 IKNLDSDITEALLQEKFSSFGK-IISLAISKDDNGL--SKGFAFVNYENPDDAKKAMEAM 251
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
+ +F K + + + E Q LYVKN+ D+T L+
Sbjct: 252 NGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELR 311
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
+LF+ G IT V + G + +GFV F+ A KA+ + + L ++A+
Sbjct: 312 DLFSSCGTITSVKVMRDDKGISKG-FGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQ 370
Query: 221 PQADQKTSGGSNSQKSALNPTYPPH 245
+ ++KT LN Y P
Sbjct: 371 RKKERKTQ---------LNLHYAPQ 386
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 18/226 (7%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGED 63
Y +V FR+++ A +AI+ N+ L GK I+ + + +F+ N+ +
Sbjct: 55 YGYVNFRSQQDAIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNA 114
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY---NHACAEYSRQKMSNPKFKLD 120
+ K G ++S ++V ++ GF E+ N+A + + + N + +
Sbjct: 115 GLHDLFKKYG-NILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVG 173
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
P ++ LY+KNL DIT+ L+E F+ GKI + I G
Sbjct: 174 KFVRKGDRILP-----GYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNG 228
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + FV++ A KA++ + + L + A+ +A+++
Sbjct: 229 LSKG-FAFVNYENPDDAKKAMEAMNGLQFGSKYLYVARAQKKAERE 273
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + E +A+EELN +KGK + +Q + +FI N+
Sbjct: 90 GYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L++
Sbjct: 150 KALHDTFAAFG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T + +ELF HG IT I A+
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--AR 262
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
Q +SR +GFV++ +A A+ + E GQ L
Sbjct: 263 DDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKL 299
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ K +A ++
Sbjct: 173 GNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIY 232
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + ++D R+ K G + S + +D Q ++RGF F+ Y H A + +
Sbjct: 233 VKNIDLDVTDEDFRELFEKHG-DITSASIARDDQ--GKSRGFGFVNYIRHEAAAVAVDHL 289
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ +F K + + E + Q LY+KNL D+ ++L+
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 161 ELFAHHGKIT--KVVI 174
++F G IT KV++
Sbjct: 350 DMFTPFGTITSAKVIL 365
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 50
D G+++G+ FV + E A+ A++ LN E KG+K+ AQ KH
Sbjct: 264 DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHE 309
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 101 GYAYVNYNATPDGEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 160
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A ++G+ F+ Y A + + ++ L++
Sbjct: 161 KALHDTFAAFG-NILSCKVAQDETGA--SKGYGFVHYETDEAASQAIKHVNG--MLLNEK 215
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T+D ++LF +G +T + +
Sbjct: 216 KVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQ 275
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F SA KA+ + GQ L
Sbjct: 276 EGKSRG-FGFVNFTTHESAFKAVDELNNKDFHGQDL 310
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 182 ETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTN 241
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + EDD R+ K G V S L +D + ++RGF F+ + H A +
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYG-DVTSSSLARDQE--GKSRGFGFVNFTTHESAFKAVD 298
Query: 111 KMSNPKFKLDD----NAPTVSWADPRNAESSAASQVKA--------LYVKNLPKDITQDR 158
+++N F D A + +S A++++ LY+KNL D+ D+
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 159 LKELFAHHGKITKVVI 174
L+E+F G IT +
Sbjct: 359 LREMFKDFGSITSAKV 374
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L G+K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL DI +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LQKAFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 19/231 (8%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNW 60
+ YA+V F+ + A A++ +N +KGK ++ +Q L F+ N+ ++
Sbjct: 51 SSNYAYVNFQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSI 110
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ V+ G ++S +V D N ++G+ F+ + H AE + +KM+ L+
Sbjct: 111 NNKALYDTVSAFG-NILSCNVVCD---ENGSKGYGFVHFETHEAAERAIEKMNG--MLLN 164
Query: 121 DNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
V R AE A A + +Y+KN +D+ +RLK+LF G V +
Sbjct: 165 GRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 225 DESGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GYA++ F+ A +A++ +N +KG+ I+ + HR +FI N+ +
Sbjct: 116 GYAYINFQQPADAERALDTMNFEMIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENS 172
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++V N + +RGF F+ + H A+ + M+ L
Sbjct: 173 IDNKALYDTFSTFG-SILSSKVVY---NEHGSRGFGFVHFETHEAAQKAINTMNG--MLL 226
Query: 120 DDNAPTVSWA---DPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
+D V R AE A A +YVKNL D+ + L++LF+ GK+ V +
Sbjct: 227 NDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVM 286
Query: 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
GQ R +GFV+F + A KA+ + E+ GQ+L A+ +A++++
Sbjct: 287 RDSNGQSRG-FGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQS 337
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 41/249 (16%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR--------------LFIG 54
++G+ FV F T E A +AI +N L +K+ +++ + +++
Sbjct: 200 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVK 259
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + E ++ ++ G + S+++++D + Q+RGF F+ + H A+ + M+
Sbjct: 260 NLHMDMDEQGLQDLFSQFGK-MQSVKVMRD--SNGQSRGFGFVNFEKHEEAQKAVDHMNG 316
Query: 115 PKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQDRLK 160
+ + V A R S QVK LYVKNL I +RLK
Sbjct: 317 KEVR--GQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLK 374
Query: 161 ELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
E+F+ +G VI AK E S +GFV F+ A KA+ + + L +
Sbjct: 375 EVFSAYG-----VITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 429
Query: 218 LAKPQADQK 226
LA+ + ++K
Sbjct: 430 LAQRKEERK 438
>gi|221121672|ref|XP_002156905.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 38/293 (12%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------AKHRLFIG 54
++ +G++ GYAF+ + T +LA AI +L+ L+ KK+K S A+ +++
Sbjct: 46 IRNYTTGQSLGYAFIEYPTAQLAEDAINQLDGMTLQDKKLKVSYARPSSTEIKNSNVYVA 105
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
+P ED + G +I+ +++ D A+++RG F+ Y + AE + + M+
Sbjct: 106 GLPSWVDEDRLLSLFAPFG-SIITHKILTDA--ASKSRGVGFVRYSLKSDAEKAIESMAG 162
Query: 115 PKFKLDDNAPTVSWA---------------DPRNAESSAASQV---------KALYVKNL 150
A V A P N+ + Q+ +YV L
Sbjct: 163 KVLPDSTTALIVKLAIPPASKQLAAAAAAAQPLNSIAGVPKQIVQYNPMSLSNPVYVYGL 222
Query: 151 PKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208
++ L ELFA G I K++ AKP + YGFV+F ++ A+ A+ +
Sbjct: 223 QPHHSELTLYELFAPFGGILNVKLIRDNAKPEKPCKGYGFVNFRKQDEALAAIATMHNHP 282
Query: 209 IDGQVLDCSLAK-PQADQKTSGG-SNSQKSALNPTYPPHLGYGMVGGAYGALG 259
DG++L S + Q Q T+ Q A P ++ GM G YGA+G
Sbjct: 283 YDGKILQVSFKQNKQLGQATAMNLLMHQGVASTPIPQNNISVGMNYG-YGAVG 334
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKH------R 50
++G++KG+ FV F A +AI+ LN L G++I K +Q +
Sbjct: 163 ETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTN 222
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +++ + +K G V+S L K + +GF F+++ NH A + +
Sbjct: 223 IYVKNINLETTDEEFTELFSKYGK-VLSAALEKTEDG--KLKGFGFVDFENHEDAAKAVE 279
Query: 111 KMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQ 156
+++ +FK D VS A + E A Q L++KNL I
Sbjct: 280 ELNGSQFK--DQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDD 337
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++LKE FA +G IT V + + G+ R +GFV F+ A KA+ + + G+ L
Sbjct: 338 EKLKEEFAPYGNITSVRVMRTENGKSRG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYV 396
Query: 217 SLAK 220
++A+
Sbjct: 397 AIAQ 400
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 18/222 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E +AIE+LN +KG+ + +Q +FI N+ +
Sbjct: 82 GYAYVNFNDHEAGKKAIEKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDN 141
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +++GF F+ + + A+ + ++ L+
Sbjct: 142 KALYDTFSVFG-NILSSKIATD--ETGKSKGFGFVHFEDDTAAKEAIDALNG--MLLNGQ 196
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S + KA +YVKN+ + T + ELF+ +GK+ + +
Sbjct: 197 EIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTE 256
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
G+ + +GFV F A KA++ + Q L S A+
Sbjct: 257 DGKLKG-FGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQ 297
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 54 GYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 113
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 114 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 167
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ RLKELF +GK V +
Sbjct: 168 KVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP 227
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV + + A KA++ E++G+ + A+ + +++
Sbjct: 228 TGKSRG-FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQ 274
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 134 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTN 193
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP ++RGF F+ Y H A + +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYG-KTLSVKVMTDP--TGKSRGFGFVSYEKHEDANKAVE 250
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 251 EMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 310
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 311 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 365
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 366 VALAQRKEERK 376
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 71
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 72 TMN---FDVVKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 124
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 125 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 165
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ R+
Sbjct: 44 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDN 103
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++GF F+ Y + A+ + +K++ ++D
Sbjct: 104 KALYDTFSSFG-NILSCKVVCD---INGSKGFGFVHYESDESAQRAIEKVNG--MLMEDK 157
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKI-TKVVIPPA 177
V+ RN AA L+VKNLP D L E F G++ + VI
Sbjct: 158 KVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDE 217
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G + +GF+ F E A A++ + EI+G+ L C A+ +A++ +
Sbjct: 218 TTGLSKC-HGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSS 266
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 29/248 (11%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------------AKH--R 50
D +KG+ FV + + E A +AIE++N ++ KK+ + + AKH
Sbjct: 124 DINGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTN 183
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
LF+ N+P +W D + + + G V+S +++ D + ++ FI + H AE + +
Sbjct: 184 LFVKNLPDSWDTDALLENFEQFGE-VVSHKVICD-ETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
M + K + ++ + + E Q LYVKNL I +
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+E F G IT + G+ + +GFV F+ A KA+ G+ L L
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKG-FGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGL 360
Query: 219 AKPQADQK 226
A+ + D+K
Sbjct: 361 AQRKEDRK 368
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L G+K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL DI +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LQKAFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 19/231 (8%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNW 60
+ YA+V F+ + A A++ +N +KGK ++ +Q L F+ N+ ++
Sbjct: 51 SSNYAYVNFQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSI 110
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ V+ G ++S +V D N ++G+ F+ + H AE + +KM+ L+
Sbjct: 111 NNKALYDTVSAFG-NILSCNVVCD---ENGSKGYGFVHFETHEAAERAIEKMNG--MLLN 164
Query: 121 DNAPTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
V R AE A A + +Y+KN +D+ +RLK+LF G V +
Sbjct: 165 GRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 225 DESGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
>gi|281349809|gb|EFB25393.1| hypothetical protein PANDA_005719 [Ailuropoda melanoleuca]
Length = 645
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------------KCSAAQAKH 49
G++KG A++ F+T+ A + +EE E+ G+ I K S +
Sbjct: 389 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGES 448
Query: 50 R-LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
+ L + N+ N E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 449 KTLVLSNLSYNATEETLQEVFEKAT-------FIKVPQNQNGKSKGYAFIEF---ASFED 498
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 499 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 556
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 557 GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 613
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 482 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 541
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 542 LSEDTTEETLKESF----DGSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 596
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 597 --EIDGNKVTLDWAKPK 611
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ + +++ ++ I
Sbjct: 243 RKKEMAKQKA----APEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDIFAKND 298
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ AE + + K+ N + P+
Sbjct: 299 LAVVDVRI-------GVSRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 346
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 347 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKT 401
Query: 194 RSSAMKALKNTEKYEIDGQVL 214
+ A K L+ + EIDG+ +
Sbjct: 402 EADAEKTLEEKQGTEIDGRSI 422
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 28/238 (11%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS---------AAQAKHR---LFIG 54
G +KGY FV F T E A+ AIE++N +L GKK+ + AA + + +F+
Sbjct: 161 GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVK 220
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ E+++ + + G + ++ ++KD ++++GF F+ + + A + + M+N
Sbjct: 221 NLDPEMAEEEINEHFSTFGV-ITNVVIMKDEN--DKSKGFGFVNFDDPEAARAAVETMNN 277
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
+ K + + + E Q LYVKNL I + LK+
Sbjct: 278 SQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQE 337
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
F+ +G IT + + G + +GFV F A +A T I+G+ + ++A+
Sbjct: 338 FSRYGNITSAKVMRDEKGISKG-FGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQ 394
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + A +A+E LN + GK I+ + HR +FI N+ +
Sbjct: 79 GYGYVNYSSGADAVRAMEALNYTPINGKTIRIMWS---HRDPSTRKSGVGNIFIKNLDES 135
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ GP I K +++G+ F+ + A + +K++ +L
Sbjct: 136 IDNKALHDTFIAFGP----ILSCKIAHQDGRSKGYGFVHFETDEAANLAIEKVNG--MQL 189
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
V+ R+ +A + K ++VKNL ++ ++ + E F+ G IT VVI
Sbjct: 190 VGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEINEHFSTFGVITNVVI--M 247
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
K ++S+ +GFV+F + +A A++ ++ + + A+ +A+++
Sbjct: 248 KDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAERE 297
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV + + A KA+++ E++G+ +
Sbjct: 227 TGKSRG-FGFVSYEKHEDANKAVEDMNGTELNGKTV 261
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 41/253 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP ++RGF F+ Y H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYG-KTLSVKVMMDP--TGKSRGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
M+ +L+ V A +N E + Q LY+KNL I
Sbjct: 250 DMNGT--ELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQV 213
++L++ F+ G IT AK E R +GFV F+ A KA+ + +
Sbjct: 308 EKLRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 214 LDCSLAKPQADQK 226
L +LA+ + ++K
Sbjct: 363 LYVALAQRKEERK 375
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFSQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVVKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 164
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|348523079|ref|XP_003449051.1| PREDICTED: nucleolin-like isoform 1 [Oreochromis niloticus]
Length = 700
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCS-----------AAQAKHRLFIGNVPR 58
KG A+V F+T+ A + +EE E++G+ I A+ A L + N+
Sbjct: 412 KGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARASAASKTLVVNNLSF 471
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
N E+ ++ K +SI + PQ + +GFAF+E+ + A+ + + +N +
Sbjct: 472 NATEEVLQSTFEK----AVSIRI---PQRDGRPKGFAFLEFESTDDAKDALENFNNTE-- 522
Query: 119 LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
++ + + ++ R+ + K L+VK L +D T++ LK+ F G + ++
Sbjct: 523 IEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGLSEDTTEETLKDAF--EGAVAARIVTDRD 580
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + +GFV F+ A + E EIDG + AKP+ +
Sbjct: 581 TGSSKG-FGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDYAKPKGE 625
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------RLFIGNV 56
G KG+AF+ F + + A A+E N+ E++G+ I+ +Q++ LF+ +
Sbjct: 495 GRPKGFAFLEFESTDDAKDALENFNNTEIEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGL 554
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ E+ ++ A G ++ +V D ++ ++GF F+++ N + +++ M +
Sbjct: 555 SEDTTEETLKDAF----EGAVAARIVTD-RDTGSSKGFGFVDFSNEDDCKAAKEAMEDG- 608
Query: 117 FKLDDNAPTVSWADPR 132
++D + T+ +A P+
Sbjct: 609 -EIDGSKVTLDYAKPK 623
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 51 LFIGNVPRNWGEDD----MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA- 105
LF+GN+ + D+ +RK +K G + + L N+ F ++++ +
Sbjct: 287 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL-------GGNKKFGYVDFASEEDLQ 339
Query: 106 ---EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + +K+ + KL+ + + + +S + L+VKNLP T D LKE+
Sbjct: 340 KGLELNGKKVMGQEVKLEK-----ARSKEGSQDSKKEKDARTLFVKNLPFSATADDLKEI 394
Query: 163 FAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEIDGQVL 214
F ++ +P PGQ S G +V F + A + ++ T+ E+ G+ +
Sbjct: 395 FKDA---VEIRVP---PGQNTSNKGIAYVEFKTEADAERTMEETQGSEVQGRSI 442
>gi|444707599|gb|ELW48864.1| CUGBP Elav-like family member 1 [Tupaia chinensis]
Length = 487
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPI--QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRGGCAFVTFTTRAMAQTAIK 167
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q L FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDDHGS---RGFGFVHFETHEAAQNAIRTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNL D+ + L++LF+ GKI V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQ 273
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A AI +N L +K+ +++
Sbjct: 133 DDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E ++ ++ G ++S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFG-KILSVKVMRD--DSGHSRGFGFVNFEKHEDAQKAVT 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I ++
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ FA +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFAPYGMITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 169
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 170 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 224
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN ++ +RLK++F+ +GK V +
Sbjct: 225 VFVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSS 284
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 285 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 190 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N ++ ++ +K G +S++++ D ++ +++GF F+ + +H A+ + +
Sbjct: 250 IYIKNFGGEMDDERLKDVFSKYGK-TLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 367 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 415
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|410969636|ref|XP_003991299.1| PREDICTED: nucleolin [Felis catus]
Length = 715
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------------KCSAAQAKH 49
G++KG A++ F+T+ A + +EE E+ G+ I K S +
Sbjct: 431 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 490
Query: 50 R-LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
+ L + N+ N E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 491 KTLVLSNLSYNATEETLQEVFEKAT-------FIKVPQNQNGKSKGYAFIEF---ASFED 540
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 541 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 598
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 599 GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 655
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 524 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 583
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 584 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 638
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 639 --EIDGNKVTLDWAKPK 653
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 26/221 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ + +++ ++ I
Sbjct: 285 RKKEMAKQKA----APEAKKQKVEGTEPTTSFNLFVGNLNFSKSAPELKTGISDIFAKND 340
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ AE + + K+ N + P+
Sbjct: 341 LAVVDVRI-------GVSRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 388
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 389 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKT 443
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNS 233
+ A K L+ + EIDG+ + + +Q GG NS
Sbjct: 444 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 484
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ R+
Sbjct: 47 GYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDN 106
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D + RG+AF+ + N A+ + ++M+ K D
Sbjct: 107 KTLYEHFSAFGK-ILSSKVMSDDHGS---RGYAFVHFQNQIAADRAIEEMNGTLLK-DCR 161
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ ++ E+ + A + +Y+KN ++ +RLKE+F+ +GK V +
Sbjct: 162 LFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSS 221
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A +A++ +I+GQ+L A+ +A+++
Sbjct: 222 GKSKG-FGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQ 267
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 47/257 (18%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D ++GYAFV F+ + A +AIEE+N C L K +K + + Q K F
Sbjct: 127 DDHGSRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNKAHEFTN 186
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+ DD +++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 187 VYIKNFGDEMDDERLKEVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKRAVE 243
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K + A + E + LY+KNL + I ++
Sbjct: 244 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEK 303
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQV-- 213
L+ F+ G I++V K QE R +G + F+ A KA+ E++G++
Sbjct: 304 LRREFSSFGSISRV-----KVMQEEGRSKGFGLICFSSAEEATKAMT-----EMNGRILG 353
Query: 214 ---LDCSLAKPQADQKT 227
L+ +LA+ ++KT
Sbjct: 354 SKPLNIALAQKPXERKT 370
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
>gi|301764124|ref|XP_002917484.1| PREDICTED: nucleolin-like [Ailuropoda melanoleuca]
Length = 717
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------------KCSAAQAKH 49
G++KG A++ F+T+ A + +EE E+ G+ I K S +
Sbjct: 433 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGES 492
Query: 50 R-LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
+ L + N+ N E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 493 KTLVLSNLSYNATEETLQEVFEKAT-------FIKVPQNQNGKSKGYAFIEF---ASFED 542
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 543 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 600
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 601 GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 657
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 526 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 585
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 586 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 640
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 641 --EIDGNKVTLDWAKPK 655
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ + +++ ++ I
Sbjct: 287 RKKEMAKQKA----APEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDIFAKND 342
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ AE + + K+ N + P+
Sbjct: 343 LAVVDVRI-------GVSRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 390
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 391 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKT 445
Query: 194 RSSAMKALKNTEKYEIDGQVL 214
+ A K L+ + EIDG+ +
Sbjct: 446 EADAEKTLEEKQGTEIDGRSI 466
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLHLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLQGCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 167 VFVGRFKSRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ + A+ + +++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQ 272
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N L+G K+ S A
Sbjct: 132 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASEFTN 191
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E QV LYVKNL I ++
Sbjct: 249 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A+KA+ E++G++L
Sbjct: 309 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDALKAMT-----EMNGRIL 357
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 124/299 (41%), Gaps = 42/299 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G+++G+AFV + T E A AI+ +N L KK+ K +A+
Sbjct: 171 ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTN 230
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH-----ACA 105
++I NV + + V GP IS+ L +D Q ++GF F+ Y NH A
Sbjct: 231 VYIKNVDLEVTDAEFEDLVKPFGP-TISVALSRDEQGV--SKGFGFVNYENHESAKQAVD 287
Query: 106 EYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
E + ++++ K K + A + + E+ A S LY+KNL + DR
Sbjct: 288 ELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDR 347
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + G R +GFV ++ A KA+ I + L +L
Sbjct: 348 LRAEFEAFGTITSSKVMRDDSGVSRG-FGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 406
Query: 219 A-----KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPA-GFAQPM 271
A + QA + Q+ +P GY G GY P G+ QPM
Sbjct: 407 AQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGY------MGQPMYGYPPMPGYGQPM 459
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E LN +KG+ + +Q + +FI N+ ++
Sbjct: 90 GYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D ++RGFAF+ Y A+ + + ++ L+D
Sbjct: 150 KALHDTFAAFG-DILSCKVGTD--ENGKSRGFAFVHYSTGEAADAAIKAVNG--MLLNDK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S +++A +Y+KN+ ++T ++L G V + +
Sbjct: 205 KVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV++ SA +A+ + EI+G+ L A+ +++++
Sbjct: 265 QGVSKG-FGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSERE 311
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 101 GYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 160
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 161 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEK 215
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+ D+T D +ELF G +T + +
Sbjct: 216 KVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQ 275
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F +A KA+++ + GQ L
Sbjct: 276 EGKPRG-FGFVNFTTHEAAFKAVEDLNGKDFRGQEL 310
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 149/392 (38%), Gaps = 95/392 (24%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+QAI+ +N L KK+ K +A
Sbjct: 182 ENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 241
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +D+ R+ K G V S L +D + + RGF F+ + H A + +
Sbjct: 242 VYVKNIGPDVTDDEFRELFEKFG-DVTSSSLARDQE--GKPRGFGFVNFTTHEAAFKAVE 298
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++ F K + + E + Q LY+KNL D+ ++
Sbjct: 299 DLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEK 358
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR------------------------------- 185
L+++FA G IT KV+ + G+E +
Sbjct: 359 LRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEKKSD 418
Query: 186 --------YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSA 237
+GFV F+ A KA+ + I+ + L +LA+ + +K+ ++ Q
Sbjct: 419 KKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQARN 478
Query: 238 LNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 297
GM P + QP V+ APG P +P G G
Sbjct: 479 QLRMQQAAAAAGM-------------PQQYMQPPVF---YAPGQQ---PGFIPQGGRGMP 519
Query: 298 LQQPGVQQHNPPPQPRSGRGGA--GSSSSGGR 327
QPG+ P P + GR G G GGR
Sbjct: 520 FPQPGM----PLPNVQGGRPGQFPGYPQQGGR 547
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 56 QNSASLYVGELDPSVTEAMLFELFSQIG-AVASIRVCRDAV-TRRSLGYAYVNYNSTPDG 113
Query: 106 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 114 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 166
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 167 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 225
Query: 223 ADQKT 227
D+++
Sbjct: 226 KDRQS 230
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 17/216 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + + +A+EELN +KGK + +Q + +FI N+
Sbjct: 99 GYAYVNYNSSDDGEKALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDN 158
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++ L++
Sbjct: 159 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETAEAANNAIKAVNG--MLLNEK 213
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ ++T D +ELF +G+IT +
Sbjct: 214 KVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDN 273
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV+F + SA KA+ + GQ L
Sbjct: 274 ETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKL 309
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+ AI+ +N L KK+ K +A
Sbjct: 180 ENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTN 239
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +D+ R+ K G + S L D + ++RGF F+ + H A +
Sbjct: 240 VYVKNIDLEVTDDEFRELFEKYGQ-ITSASLAHDNETG-KSRGFGFVNFVKHESAAKAVD 297
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++++ + K + + AE + Q LYVKNL D+ ++
Sbjct: 298 ELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEK 357
Query: 159 LKELFAHHGKITKVVI 174
L+++FA G IT +
Sbjct: 358 LRDMFAPFGTITSAKV 373
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 146/347 (42%), Gaps = 53/347 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
+G++ GY FV F +E A AI++LN L K++ + +++
Sbjct: 153 AGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYV 212
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ E+D++K + G + S +++D ++R F F+ + N A S + ++
Sbjct: 213 KNLSETTTEEDLKKIFGEYG-AITSAVVMRD--GDGKSRCFGFVNFENPDDAARSVEALN 269
Query: 114 NPKFKLDDNAPTVSWADPRNA---------ESSAASQVKA-----LYVKNLPKDITQDRL 159
F D+ V A ++ E + V LYVKNL IT D+L
Sbjct: 270 GKTF--DEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKL 327
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ G IT + G + GFV ++ A KAL I + L +LA
Sbjct: 328 KELFSEFGTITSCKVMRDPNGVSKGS-GFVAYSTAEEASKALTEMNGKMIVSKPLYVALA 386
Query: 220 KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG--- 276
+ + +++ +Q S + P P +G M +G G G Q + YG+G
Sbjct: 387 QRKEERRAR--LQAQFSQMRPAMAPAVGPRMPMYPHGTPGIG-------QQLFYGQGPPA 437
Query: 277 ---AAPG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG 317
PG ++P + P+ + V QPG QQ P RSG G
Sbjct: 438 IVPPQPGFGYQQQLVPGMRPNFFVPMV--QPG-QQAQRPSGRRSGAG 481
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGE 62
GY +V + A+QA+E LN + GK I+ + ++I N+ +
Sbjct: 71 GYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIYIKNLDKAIDN 130
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +A Q+ G+ F+++ N A+ + K++ L+D
Sbjct: 131 KALHDTFSAFG-NILSCKVATD--SAGQSLGYGFVQFDNEESAKNAIDKLNG--MLLNDK 185
Query: 123 APTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V R S + K +YVKNL + T++ LK++F +G IT V+ + G
Sbjct: 186 QVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVV--MRDG 243
Query: 181 QERSR-YGFVHFAERSSAMKALK 202
+SR +GFV+F A ++++
Sbjct: 244 DGKSRCFGFVNFENPDDAARSVE 266
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 90 GYAYVNYLNAADGERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D +++G+ F+ Y A+ + + ++ L+D
Sbjct: 150 KALHDTFAAFG-NVLSCKVATDEHG--RSKGYGFVHYETAEAADTAIKAVNG--MLLNDK 204
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P +S + ++ +Q +YVKN+ ++T + ++LF G +T VI +
Sbjct: 205 KVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDE 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV+F + A K +++ +E++G+ L + A+ +A+++
Sbjct: 265 EGRSKG-FGFVNFEKHEEAQKGVESLHDFELNGKKLFVTRAQKKAERE 311
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 34/244 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+ G +KGY FV + T E A AI+ +N L KK+ K +A+
Sbjct: 171 EHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTN 230
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +++ R+ + G V S + +D + +++GF F+ + H A+ +
Sbjct: 231 VYVKNIDAEVTDEEFRQLFEQFG-NVTSAVIQRDEE--GRSKGFGFVNFEKHEEAQKGVE 287
Query: 111 KMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQ 156
+ + F+L+ V+ A + E + Q LY+KNL ++
Sbjct: 288 SLHD--FELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDD 345
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
+RL++ F G IT + + G + +GFV F+ A KA+ I + L
Sbjct: 346 ERLRQEFEPFGTITSAKVMRDEKGSSKG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYV 404
Query: 217 SLAK 220
SLA+
Sbjct: 405 SLAQ 408
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 108 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 167
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 224
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 225 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 284
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 285 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 339
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 340 VALAQRKEERK 350
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 28 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 87
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 88 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 141
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 142 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 201
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 202 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 248
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 19/146 (13%)
Query: 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT-VSWA-- 129
GP V+SI + +D ++ G+A++ + A AE + M+ F + P + W+
Sbjct: 10 GP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTMN---FDVIKGKPIRIMWSQR 64
Query: 130 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 189
DP S S V +++KNL K I L + F+ G I + + G + Y FV
Sbjct: 65 DP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YAFV 118
Query: 190 HFAERSSAMKALKNTEKYEIDGQVLD 215
HF + +A KA++ +++G +L+
Sbjct: 119 HFETQEAADKAIE-----KMNGMLLN 139
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 146 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 205
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 262
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 263 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 322
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 323 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 377
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 378 VALAQRKEERK 388
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 38/290 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKH-RLFIGN 55
GE+KGY FV F E A AIE++N L+GKK+ + S ++ K +F+ N
Sbjct: 166 GESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKN 225
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ +D+++ + G V S +++D + +++GF FI + A + Q ++
Sbjct: 226 LDEAVSDDEVKAMFAEHGT-VNSCIIMRDDE--GKSKGFGFINFEEPEQAASAVQALNGK 282
Query: 116 KF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF 163
K + A + + +E A Q LYVKNL DI + L+ F
Sbjct: 283 DVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEF 342
Query: 164 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223
+ G IT + G+ R +GFV +A A +A+ I G+ + +LA+ +
Sbjct: 343 SQFGTITSAKVMVDSAGKSRG-FGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRR- 400
Query: 224 DQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVY 273
+ +++ L Y + M G G + G P G A PM Y
Sbjct: 401 --------DVRRAQLEQQYQQRV--AMPPGPRGPMAPGMFPPGGAPPMFY 440
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY---YNHACAEY 107
L++G++ R+ E + + ++IGP V SI + +D ++ G+A++ Y + A AE
Sbjct: 40 LYVGDLDRDVTEAQLFEVFSQIGP-VASIRVCRDAVT-RRSLGYAYVNYNSVLDPAAAER 97
Query: 108 SRQKMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 165
+ +++ L + W+ DP + S V +++KNL + + L + F+
Sbjct: 98 ALDQLNYT--PLVGRPMRIMWSHRDP----AFRKSGVGNIFIKNLDRSVDNKALHDTFSA 151
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
G I + G+ + YGFVHF + SA A++ ++G+
Sbjct: 152 FGNILSCKVAQDLKGESKG-YGFVHFEKDESARLAIEKVNGMLLEGK 197
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 27/119 (22%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK---------------- 48
D G++KG+ F+ F E A+ A++ LN ++ K++ AQ K
Sbjct: 254 DEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRS 313
Query: 49 --------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
L++ N+ + ++ +R ++ G + S +++ D +A ++RGF F+ Y
Sbjct: 314 ERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGT-ITSAKVMVD--SAGKSRGFGFVCY 369
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 30/197 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 185 ETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTN 244
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P +++ R+ K G V S L +D ++N++RGF F+ + NH A +
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFG-DVTSASLARD-TDSNKSRGFGFVNFINHEHAAKAVD 302
Query: 111 KMSNPKFKLDD-------------NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQD 157
+++ FK D S+ R E ++ Q LYVKNL D+ D
Sbjct: 303 ELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAAR-IEKASKYQGVNLYVKNLDDDVDDD 361
Query: 158 RLKELFAHHGKITKVVI 174
+L+ELF G IT +
Sbjct: 362 KLRELFTPFGSITSAKV 378
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 17/216 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + T +A+EELN +KG+ + +Q + +FI N+
Sbjct: 104 GYAYVNYNTTIDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDN 163
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A+ +G+ F+ Y A + + ++ L++
Sbjct: 164 KALHDTFAAFG-NILSCKVAQDETGAS--KGYGFVHYETDEAASQAIKHVNG--MLLNEK 218
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+P + T + +ELF G +T +
Sbjct: 219 KVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDT 278
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GFV+F A KA+ + GQ L
Sbjct: 279 DSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDL 314
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 43/289 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
+ G+++GY FV F ++ A AI+ LNS + K+I + + L++
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMK 206
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + ED +R+ + G ++S+ + KD RG+AF+ + N A + + ++
Sbjct: 207 NLDADVSEDLLREKFAEFGK-IVSLAIAKDENRLC--RGYAFVNFDNPEDARRAAETVNG 263
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
KF K + ++ E ++V +YVKN+ +T++ L++
Sbjct: 264 TKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKH 323
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F+ G IT + + G+ + +GFV F+ A+ A+K G+ L ++A+ +
Sbjct: 324 FSQCGTITSTKLMCDEKGKSKG-FGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Query: 223 ADQK----------TSGGSNSQKSALNP-TYPPHLGY-----GMVGGAY 255
D+K +S +++NP TY P L Y GMV +Y
Sbjct: 383 EDRKMQLQVQFGNRVEARKSSSSASVNPGTYAP-LYYTNTHPGMVYQSY 430
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 16/234 (6%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----SAAQAKHR----LFI 53
K SG + Y + F +++ A+ AIE+ N+ L GK I+ A A+ +F+
Sbjct: 57 KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFV 116
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+P + ++ K G ++S ++ ++RG+ F+++ A + Q ++
Sbjct: 117 KNLPESVTNAVLQDMFKKFG-NIVSCKVA--TLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
+ + D V + + LY+KNL D+++D L+E FA GKI +
Sbjct: 174 STI--VADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 174 IPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
I AK R Y FV+F A +A + + + L A+ +A+++
Sbjct: 232 I--AKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 35/312 (11%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G +KGY FV F + + A+ AIE +N L KK+ K A +A ++
Sbjct: 194 GNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVY 253
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + E++ K K G + S+ L KD NA + RGFAF+ + H A+ + ++
Sbjct: 254 VKNLDLDTTEEEFTKLFEKYGK-ITSLSLAKD--NAGKFRGFAFVNFATHDSAQQAVDEL 310
Query: 113 SNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ ++K + + E Q L+VKNL +I +RLK
Sbjct: 311 NDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLK 370
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
F+ G IT + + + + +GFV ++ A KA+ + + G+ L +LA+
Sbjct: 371 SEFSAFGTITSAKVMTDENNKSKG-FGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQ 429
Query: 221 PQADQKTSGGSNSQ---KSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGA 277
+ +++ + Q + L G YGA + P G+ P V RG
Sbjct: 430 RKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAAAVQYGAAPIVFGPGGYPMPPVNARGM 489
Query: 278 --APGGMAMLPM 287
PG +PM
Sbjct: 490 PIVPGQPGAIPM 501
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +A++ELN +KG+ + +Q L FI N+
Sbjct: 111 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDN 170
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D ++G+ F+ + + A + + ++ L+D
Sbjct: 171 KALHDTFSAFGK-ILSCKVAVD--ELGNSKGYGFVHFDSVDSANAAIEHVNG--MLLNDK 225
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S +KA +YVKNL D T++ +LF +GKIT + +
Sbjct: 226 KVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDN 285
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R + FV+FA SA +A+ +E G+ L
Sbjct: 286 AGKFRG-FAFVNFATHDSAQQAVDELNDFEYKGKKL 320
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 27/121 (22%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G+ +G+AFV F T + A QA++ELN E KGKK+ AQ KH
Sbjct: 285 NAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKL 344
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100
LF+ N+ ++ ++ + G + S +++ D N+++GF F+ Y
Sbjct: 345 EKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGT-ITSAKVMTDEN--NKSKGFGFVCYS 401
Query: 101 N 101
N
Sbjct: 402 N 402
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
SG + GY +V F +++ A+ A+E LN L GK I+ + + LF+ N+
Sbjct: 74 SGVSLGYGYVNFYSRQEATCALEALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLE 133
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ ++ + + G ++S ++ D +A Q++G+ F++Y A+ + ++ N
Sbjct: 134 PSIDSKNLYEMFSSFGT-ILSCKVATD--SAGQSKGYGFVQYETEESAQDAINRL-NGML 189
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
D RN E + +Y+KNLP + + D L++ FA G+IT V+
Sbjct: 190 ANDREMFVGLHMRRRNREV----KFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRD 245
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV+F + A++A+K I+ + L A+ +A+++
Sbjct: 246 VNGVSKC-FGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQ 293
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 53/316 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------LFIGNVPR 58
+G++KGY FV + T+E A AI LN +++ + ++I N+P
Sbjct: 161 AGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREVKFTNVYIKNLPT 220
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIE-------------------- 98
+ +DD+R+ G + S +++D ++ GF E
Sbjct: 221 EFSDDDLRQEFAPFGE-ITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDK 279
Query: 99 --YYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ 156
Y A + RQ KFK +D V + N LY+KN+ I
Sbjct: 280 TLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGIN-----------LYLKNIDDSIND 328
Query: 157 DRLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQV 213
+ LK LF G++T KV++ Q RS+ GFV FA + A+ + +
Sbjct: 329 EGLKILFEEFGQVTSCKVMV----DAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKP 384
Query: 214 LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVP---AGFAQP 270
L LA+P+ +++ ++ + L P+ G V +G G +P A F P
Sbjct: 385 LYVGLAQPKEERRAMLMAHFAQRNLAMAASPYAGPQQV--YFGHPAPGQIPPQAAVFGFP 442
Query: 271 MVYGRGAAPGGMAMLP 286
+ P M+P
Sbjct: 443 QHFVPAMGPVSPVMMP 458
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV + + A KA+++ E++G+ +
Sbjct: 227 TGKSRG-FGFVSYEKHEDANKAVEDMNGTELNGKTV 261
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 41/253 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP ++RGF F+ Y H A + +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYG-KTLSVKVMMDP--TGKSRGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
M+ +L+ V A +N E + Q LY+KNL I
Sbjct: 250 DMNGT--ELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQV 213
++L++ F+ G IT AK E R +GFV F+ A KA+ + +
Sbjct: 308 EKLRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 214 LDCSLAKPQADQK 226
L +LA+ + ++K
Sbjct: 363 LYVALAQRKEERK 375
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFSQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVVKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 164
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP + ++RGF F+ Y H A + +
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYG-KTLSVKVMTDP--SGKSRGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKE+F +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GFV + + A KA++ E++G+ + A+ + +++
Sbjct: 227 SGKSRG-FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQ 273
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F +A+E LN +KGK + +Q L FI N+ +
Sbjct: 81 GYAYVNFHNIVDGERALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDN 140
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + ++G+ F+ Y A+ + + + L+D
Sbjct: 141 KALHDTFSAFG-NILSCKIALD--ESGNSKGYGFVHYETEEAADNAIKHVDG--MLLNDK 195
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR + Q++A +YVKNL + I ++ KE+F+ G IT ++ +
Sbjct: 196 KVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDE 255
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GF++F A KA+ + E +G+ L + A+ + +++
Sbjct: 256 EGKSKG-FGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQKKTERE 302
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 43/240 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
+SG +KGY FV + T+E A AI+ ++ L KK+ K +AK
Sbjct: 162 ESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTN 221
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + ++ ++ +K GP I+ LV+ + +++GF FI + N+ A +
Sbjct: 222 VYVKNLDESINDEQFKEMFSKFGP--ITSALVQTDEEG-KSKGFGFINFENYEDAHKAVD 278
Query: 111 KMSNPKFKLDDNAPTVSWA----------------DPRNAESSAASQVKALYVKNLPKDI 154
++ + + N T+ A + E A Q LY+KNL DI
Sbjct: 279 TLN----ETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDI 334
Query: 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++L++ F+ +G IT + + G + +GFV F+ A KA+ E++G+++
Sbjct: 335 DDEKLRQEFSVYGVITSAKVMCDEKGTSKG-FGFVCFSSPDEATKAVT-----EMNGRMI 388
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 101 GYAYVNYNATPDGEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 160
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A+ +G+ F+ Y A + + ++ L++
Sbjct: 161 KALHDTFAAFG-NILSCKVAQDETGAS--KGYGFVHYETDEAASQAIKHVNG--MLLNEK 215
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T+D ++LF +G +T + +
Sbjct: 216 KVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQ 275
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F SA KA+ + GQ L
Sbjct: 276 EGKSRG-FGFVNFTTHESASKAVDELNNKDFHGQDL 310
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E ASQAI+ +N L KK+ K +A
Sbjct: 182 ETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTN 241
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + EDD R+ K G V S L +D + ++RGF F+ + H A +
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYG-DVTSSSLARDQE--GKSRGFGFVNFTTHESASKAVD 298
Query: 111 KMSNPKFKLDD 121
+++N F D
Sbjct: 299 ELNNKDFHGQD 309
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 50
G+++G+ FV F T E AS+A++ELN+ + G+ + AQ KH
Sbjct: 277 GKSRGFGFVNFTTHESASKAVDELNNKDFHGQDLYVGRAQKKHE 320
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN D+ +RLKELF +GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ R +GF+ + + A KA+++ E++G+ + A+ + +++
Sbjct: 227 TGKSRG-FGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQ 273
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP ++RGF FI Y H A + +
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYG-KTLSVKVMTDP--TGKSRGFGFISYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 DMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFSQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVVKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 164
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKH----R 50
+ G+++G+AFV ++T E A AI+ ++ L KK+ + S A+ +
Sbjct: 163 EDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTN 222
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+ NV + E + V+K G +SI L D + +++GF F+ Y +H AE +
Sbjct: 223 VFVKNVDLSVTEKEFEDLVSKFGE-TVSIALSLDEE--GKSKGFGFVNYVSHEAAEKAVD 279
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++++ + +++ + + + E A S LYVKNL + DR
Sbjct: 280 ELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDR 339
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + + G R+ +GFV ++ A KA+ I + L +L
Sbjct: 340 LRAEFDSFGTITSCKVMKDERGVSRN-FGFVCYSSPEEATKAVSEMNGKMIGSKPLYVAL 398
Query: 219 AK 220
A+
Sbjct: 399 AQ 400
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 18/229 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E LN +KG+ + +Q + +FI N+ +
Sbjct: 82 GYAYVNYLNAADGERALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDN 141
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D ++RGFAF+ Y A+ + + + L+D
Sbjct: 142 KALHDTFAAFGE-ILSCKVGVD--EDGKSRGFAFVHYQTGEAADAAIKGVDG--MMLNDK 196
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S A + +A ++VKN+ +T+ ++L + G+ + + +
Sbjct: 197 KVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDE 256
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV++ +A KA+ E++GQ L A+ + ++ T
Sbjct: 257 EGKSKG-FGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDT 304
>gi|147902038|ref|NP_001087561.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
laevis]
gi|51261513|gb|AAH80105.1| MGC84540 protein [Xenopus laevis]
Length = 389
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 59/319 (18%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAA---------------------QAKHR 50
Y FV F A+ ++ +N ++ GK++K + A Q
Sbjct: 48 YCFVEFFEHRHAAASLAAINGRKIMGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDHFH 107
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS-- 108
+F+G++ DD++ A G + +VKD +++G+ F+ ++N AE +
Sbjct: 108 VFVGDLSPEITTDDIKAAFAPFG-RISDARVVKD-MTTGKSKGYGFVSFFNKWDAENAIA 165
Query: 109 ---------RQKMSN--------PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 151
RQ +N PK + NA +++ + N S + V Y +
Sbjct: 166 QMGGQWLGGRQIRTNWATRKPPAPKSTYESNAKQLTYEEVVNQSSPSNCTV---YCGGVT 222
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
+T+ +++ F+ G+I +V + P K Y FV F+ SA A+ + I+G
Sbjct: 223 SGLTEQLMRQTFSPFGQIMEVRVFPDK------GYSFVRFSSHESAAHAIVSVNGTTIEG 276
Query: 212 QVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG--AGYVPAGFAQ 269
V+ C K D S+ S + ++PP YG G YG + YVP G+
Sbjct: 277 HVVKCYWGKETPDMLNPVQQVSEPSQI--SFPPP--YGQWGQWYGGAQQISQYVPNGWQM 332
Query: 270 PM--VYGRGAAPGGMAMLP 286
P VYG+ G + P
Sbjct: 333 PAYGVYGQAWNQQGYSQTP 351
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++GN+ R+ E + + +++GP S +++ D N + F+E++ H A S
Sbjct: 9 LYVGNLSRDVTEPLILQVFSQLGP-CKSCKMIMDTAG---NDPYCFVEFFEHRHAAASLA 64
Query: 111 KMSNPKF---KLDDNAPTVSWADPRNAESSAA-SQVKA-----LYVKNLPKDITQDRLKE 161
++ K ++ N T + ++A SS+ S +++ ++V +L +IT D +K
Sbjct: 65 AINGRKIMGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKA 124
Query: 162 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA- 219
FA G+I+ V+ G+ + YGFV F + A A+ + G+ + + A
Sbjct: 125 AFAPFGRISDARVVKDMTTGKSKG-YGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWAT 183
Query: 220 -KPQADQKT 227
KP A + T
Sbjct: 184 RKPPAPKST 192
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 129/301 (42%), Gaps = 42/301 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 53
SGE+KGY FV F +E A AI +LN L KK+ S + +++
Sbjct: 163 SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYV 222
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ED++++ K GP + S+ +++ + ++R F F+ + N A + + ++
Sbjct: 223 KNLSESTTEDNLKEIFGKFGP-ITSVVVMR--EGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQD-R 158
KF DD V A ++ E++ +Q LY+KNL I D +
Sbjct: 280 GKKF--DDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEK 337
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+FA G IT + G + GFV F A +AL I + L +L
Sbjct: 338 LKEIFADFGTITSCKVMRDLNGVSKGS-GFVAFKSAEDASRALVAMNGKMIGSKPLYVAL 396
Query: 219 AKPQADQKTSGGSNSQKSALNP-TYPPHLGYGM------VGGAYGALGAGYVPAGFAQPM 271
A+ + +++ +Q S + P PP + M V G L G P F P
Sbjct: 397 AQRKEERRAR--LQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQ 454
Query: 272 V 272
+
Sbjct: 455 L 455
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGE 62
GYA+V F + A++A+E LN + GK I+ S +FI N+ ++
Sbjct: 81 GYAYVNFSSPADAARALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDN 140
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ + + +++G+ F+++ A+ + K++ L+D
Sbjct: 141 KALYDTFSVFG-NILSCKVAT--EMSGESKGYGFVQFELEEAAQNAISKLNG--MLLNDK 195
Query: 123 ----APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
P V + N S + +YVKNL + T+D LKE+F G IT VV+
Sbjct: 196 KVYVGPFVRKQERENV--SGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREG 253
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
G+ R +GFV+F A +A+++ + D +
Sbjct: 254 DGKSRC-FGFVNFENPDDAARAVEDLNGKKFDDK 286
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|218195457|gb|EEC77884.1| hypothetical protein OsI_17174 [Oryza sativa Indica Group]
Length = 274
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 35 LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV-TKIGPGVISIELVKDPQNANQNRG 93
+KG+ A L + N+ +W +DD+ + + T + I LV+DP+ +NRG
Sbjct: 2 VKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPERKGKNRG 61
Query: 94 FAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADPRNAESSAASQVKALYVKNLPK 152
+AF+++ + + K+ N L D VS++ + + +VK++++ LP
Sbjct: 62 YAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSQDDKIMEKVKSVFLDGLPP 121
Query: 153 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206
+D+++E+F G+I + + +R +GF+ F R SA+ + K
Sbjct: 122 HWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSK 175
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 176 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ + E++ RK + G + S L +DP+ ++RGF F+ Y H A+ + +M
Sbjct: 236 IKNIDPDVTEEEFRKIFEQFGE-ITSATLSRDPEG--KSRGFGFVNYSTHESAQAAVDEM 292
Query: 113 SNPKFKL------------DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
+ + K + + E ++ Q LYVKNL D+ ++L+
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 161 ELFAHHGKITKVVI 174
ELF +G IT +
Sbjct: 353 ELFGPYGTITSAKV 366
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 93 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDN 152
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 153 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 207
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KN+ D+T++ +++F G+IT +
Sbjct: 208 KVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDP 267
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+++ SA A+ E+ Q L
Sbjct: 268 EGKSRG-FGFVNYSTHESAQAAVDEMHDKEVKTQKL 302
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 123/297 (41%), Gaps = 42/297 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL DI +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKAFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 219 AKPQAD----------QKTSGGSNSQKSALNPTYP-PHLGYGMVGGAYGALGAGYVP 264
A+ + D Q+ + +NP P P GY M A Y P
Sbjct: 368 AQRKEDRQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYP 424
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 19/231 (8%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNW 60
+ YA+V F+ + A A++ +N +KGK ++ +Q L F+ N+ ++
Sbjct: 51 SSSYAYVNFQHPKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSI 110
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ V+ G ++S ++V D N ++G+ F+ + H AE + +KM+ L+
Sbjct: 111 NNKVLYDTVSAFG-NILSCKVVCD---ENGSKGYGFVHFETHEAAERAIEKMNGT--LLN 164
Query: 121 DNAPTV-SWADPRNAESSAASQVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
D V + + E+ ++VK +Y+KN +D+ +RLK+LF G V +
Sbjct: 165 DRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 225 DESGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI+G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|464252|sp|P20397.3|NUCL_XENLA RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|64937|emb|CAA44805.1| nucleolin [Xenopus laevis]
Length = 651
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 30/239 (12%)
Query: 3 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
GKD G KG A+V F ++ A++A+EE E++G+ I K +
Sbjct: 356 GKD-GSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDS 414
Query: 51 --LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
L + N+ + ED +R+ K SI + PQN + +GFAFIE+ + A+ +
Sbjct: 415 KVLVVNNLSYSATEDSLREVFEK----ATSIRI---PQNQGRAKGFAFIEFSSAEDAKDA 467
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSA---ASQVKALYVKNLPKDITQDRLKELFAH 165
+N + ++ + + ++ + ++Q K L+V+ L +D T++ LKE F
Sbjct: 468 MDSCNNTE--IEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF-- 523
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + ++ G + +GFV F+ A A + E EIDG + AKP+ D
Sbjct: 524 DGSVNARIVTDRDTGASKG-FGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 37 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNANQNRGFA 95
KK K A +FIGN+ D+++ A+ + ++I+ ++ ++ F
Sbjct: 221 AKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIR----IGNSKKFG 276
Query: 96 FIEYYNHACAE----YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 151
++++ + E + +K+ + K++ +++ + AE+ + L+VKN+P
Sbjct: 277 YVDFSSEEEVEKALKLTGKKILGTEVKIE---KAMAFDKNKTAENKKERDSRTLFVKNIP 333
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
T + L+E+F + I IP K G + +V F+ A KAL+ + EI+G
Sbjct: 334 YSTTVEELQEIFENAKDIR---IPTGKDGSNKG-IAYVEFSNEDEANKALEEKQGAEIEG 389
Query: 212 QVL 214
+ +
Sbjct: 390 RSI 392
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 110/233 (47%), Gaps = 18/233 (7%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNV 56
+S + GYA+V F A++A+E LN L K I+ S +FI N+
Sbjct: 73 NSRRSLGYAYVNFSNPMDAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNL 132
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ + + G ++S ++ D + Q++GF F++Y E+++ M +
Sbjct: 133 DKTIDNKTLHDTFSAFG-AILSCKVATD--DMGQSKGFGFVQYEKE---EFAQSAMKSLN 186
Query: 117 FKLDDNAPTVSWADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
L ++ P R E S ++ ++VKNL + T++ L ++F+ +G IT V
Sbjct: 187 GMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAV 246
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ G+ R +GF++F A++A++ +I+ + C A+ +++++
Sbjct: 247 VMVGTDGKSRC-FGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSERE 298
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 148/359 (41%), Gaps = 64/359 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LF 52
D G++KG+ FV + +E A A++ LN + K + K +F
Sbjct: 160 DMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVF 219
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-----HACAEY 107
+ N+ + ++D+ K ++ G ++ +V ++R F FI + + A E
Sbjct: 220 VKNLSESTTKEDLVKIFSEYGNITSAVVMVG---TDGKSRCFGFINFESPDDAVRAVEEL 276
Query: 108 SRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
+ +K+++ ++ K + + +++ Q + LY+KNL I+ D+L+
Sbjct: 277 NGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLR 336
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
ELF+ GKIT + + G + GFV F+ R A +A+ + G+ L + A+
Sbjct: 337 ELFSTFGKITSCKVMRDQNGVSKGS-GFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQ 395
Query: 221 PQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYGALGAGY 262
+ ++K +Q S + P YPP L YG G+
Sbjct: 396 RKEERKAM--LQAQFSQMRPVPITPSMTPRLPMYPPMAPLGQQLFYGQAPPPMMPPQPGF 453
Query: 263 VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGS 321
GF Q +V G P G M P+ + P VQQ P+P R GAGS
Sbjct: 454 ---GFQQQLV--PGMRPSGAHM-----PNYFV------PVVQQGQQGPRPGMRRSGAGS 496
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 140/326 (42%), Gaps = 51/326 (15%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH---------RLFIG 54
++ G + GY +V + T E A+ AIE+L+ + G++++ ++ +I
Sbjct: 162 REGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDRPDIDSWTNCYIK 221
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
NVP W + + + + G V+S + + ++ NQ GF FI + H A + + ++
Sbjct: 222 NVPYEWDDARLNQEFAQFGE-VLSATVSR--EDTNQTLGFGFINFAEHESAVAAVEALNG 278
Query: 115 PKFKLDDNAPTVS---WADPRNAESSAASQVKA-----------------LYVKNLPKDI 154
++ + ++ + +S +++A LYVKNL +
Sbjct: 279 KEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDDSV 338
Query: 155 TQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
T D L++ FA G IT V+ AK G+ R +GFV ++ + +A+ I +
Sbjct: 339 TDDMLRDEFAVMGTITSARVMKDAKDGRSRG-FGFVCYSTPEESTRAVNEMNGKLIANKP 397
Query: 214 LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGF-AQPMV 272
+ +LA+ + ++ + A P P GM+ GA P G+ PM
Sbjct: 398 IFVALAQRREVRRAQLEAQHANRAGGPGQP-----GMMRAPMGA------PMGYPGMPMY 446
Query: 273 YGRGAAPGGMA----MLPMLL-PDGR 293
R GGM M+P ++ P GR
Sbjct: 447 MQRPGPGGGMQPAYPMMPQMMGPGGR 472
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 18/229 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GY++V F A +A++ +N +KGK + +Q L F+ N+
Sbjct: 81 GYSYVNFHQMADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDN 140
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + + G+ ++ Y A + +K+ +D
Sbjct: 141 KQLYDTFSLFG-NILSCKVVTD-REGGVSMGYGYVHYETAEAANAAIEKLDG--MLIDGQ 196
Query: 123 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
V RN S Y+KN+P + RL + FA G++ + Q
Sbjct: 197 EVQVGHFMRRNDRPDIDSWTNC-YIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQT 255
Query: 183 RSRYGFVHFAERSSAMKALK--NTEKY--EIDGQVLDCSLAKPQADQKT 227
+GF++FAE SA+ A++ N ++Y +DG+ + + +A +K+
Sbjct: 256 LG-FGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKS 303
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + +GP V SI + +D ++ G++++ ++ A AE +
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGP-VASIRVCRDAV-TRRSLGYSYVNFHQMADAERAMD 98
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V ++VKNL + I +L + F+ G
Sbjct: 99 TMN---FSMIKGKPCRIMWSQRDP----SLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFG 151
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
I + + G YG+VH+ +A A++ + IDGQ
Sbjct: 152 NILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQ 196
>gi|432875366|ref|XP_004072806.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 122/308 (39%), Gaps = 44/308 (14%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----------KHRLFIGNVPRNWG 61
Y FV F A+ ++ +N ++ GK++K + A +F+G++
Sbjct: 48 YCFVEFYDHRHAAASLAAMNGRKIMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEIT 107
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN------- 114
+D++ A G + +VKD +++G+ F+ ++N AE + Q M
Sbjct: 108 TEDVKAAFAPFGR-ISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQHMGGQWLGGRQ 165
Query: 115 ------------PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
PK + N+ +S+ + + S + V Y + +T+ +++
Sbjct: 166 IRTNWATRKPPAPKTTYESNSKHLSFEEVMSQSSPSNCTV---YCGGVSSGLTEQLMRQT 222
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F+ G+I +V + P K Y FV F SA A+ + IDG V+ C K
Sbjct: 223 FSAFGQIMEVRVFPDK------GYSFVRFNSHESAAHAIVSVNGTSIDGHVVKCYWGKET 276
Query: 223 ADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGA--LGAGYVPAGFAQPM--VYGRGAA 278
D S S +P YG G YG + YVP G+ P VY +G
Sbjct: 277 PDMMNSMQQMSIPQQNKIGFPAAQPYGQWGQWYGNGPQISQYVPNGWQVPTYGVYSQGWN 336
Query: 279 PGGMAMLP 286
G LP
Sbjct: 337 QQGFNHLP 344
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++GN+ R+ E + + T+IGP S +++ D N + F+E+Y+H A S
Sbjct: 9 LYVGNLSRDVTEPLILQVFTQIGP-CKSCKMIVDTAG---NDPYCFVEFYDHRHAAASLA 64
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
M+ K + V+WA ++ S ++V +L +IT + +K FA G+I+
Sbjct: 65 AMNGRK--IMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTEDVKAAFAPFGRIS 122
Query: 171 KV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA--KPQADQKT 227
V+ G+ + YGFV F + A A+++ + G+ + + A KP A KT
Sbjct: 123 DARVVKDMATGKSKG-YGFVSFFNKWDAENAIQHMGGQWLGGRQIRTNWATRKPPAP-KT 180
Query: 228 SGGSNSQ 234
+ SNS+
Sbjct: 181 TYESNSK 187
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDDHGS---RGFGFVHFETHEAAQQAITTMNG--MLLNDR 166
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R + A + +YVKNL D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G R +GFV+F + A KA+ + E+ G++L A+ + ++++
Sbjct: 227 SGHSRG-FGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 40/238 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E ++ ++ G ++S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFG-KMLSVKVMRD--DSGHSRGFGFVNFQKHEEAQKAVM 249
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQ 156
M+ ++ V A R S Q+K LYVKNL I
Sbjct: 250 DMNGK--EVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++L++ F+ +G IT + G +GFV F+ A KA+ E++G++L
Sbjct: 308 EKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVT-----EMNGRIL 358
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 59/341 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G++KG+ FV F + A++AI+ LN L G++I + +
Sbjct: 170 ETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTN 229
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +++ ++ KIG V S+ L + P + +GF F+ Y +H A + +
Sbjct: 230 VYVKNIDLETTDEEFKEFFGKIGT-VTSVALERGPDG--KLKGFGFVNYEDHNDAVKAVE 286
Query: 111 KMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQ 156
+++ +FK D V A + E A Q L+VKNL I
Sbjct: 287 ELNGAEFK--DQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDD 344
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++L+E FA G IT V + + G+ + +GFV F+ A KA+ + + G+ L
Sbjct: 345 EKLQEEFAPFGNITSVKVMRTENGKSKG-FGFVCFSSPEEATKAITEKNQQIVAGKPLYV 403
Query: 217 SLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
++A+ + +++ Q A N + Y A A AG +P F PM YG
Sbjct: 404 AIAQRKDVRRSQLAQQIQ--ARN-----QMRYQQATAAAAAAAAG-IPGQFMPPMFYG-- 453
Query: 277 AAPGGMAMLPMLLPDGRIGYVLQQPGVQQHN--PPPQPRSG 315
M P +P P QQ N PP Q R+G
Sbjct: 454 ------VMPPRGVP-------FNGPNPQQMNGVPPQQFRNG 481
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E QAIE+LN +KGK + +Q L FI N+ ++
Sbjct: 89 GYAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDN 148
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +++GF F+ + + A + ++ L+
Sbjct: 149 KALFDTFSVFG-NILSSKIATD--ETGKSKGFGFVHFEEESAANEAIDALNG--MLLNGQ 203
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V+ R S + KA +YVKN+ + T + KE F G +T V +
Sbjct: 204 EIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGP 263
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ + +GFV++ + + A+KA++ E Q L
Sbjct: 264 DGKLKG-FGFVNYEDHNDAVKAVEELNGAEFKDQEL 298
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 32/255 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D G +KGY FV F T+ A AIE++N L KK+ Q + +
Sbjct: 63 DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTN 122
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+ N + ++ + +K G + S ++ D Q + +GF F+ + + A + +
Sbjct: 123 VFVKNFGEHLDQEKLSAMFSKFGE-ITSAVVMTDAQ--GKPKGFGFVAFADQDAAGQAVE 179
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESS-------AASQVKA-------LYVKNLPKDITQ 156
K+++ + D +V A ++ S+ A Q + LYVKN+ +D+
Sbjct: 180 KLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLND 239
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
D L++ F+ G IT + + G+ + +GFV F + A A+ + I + L
Sbjct: 240 DGLRDHFSSFGTITSAKVMVDENGRSKG-FGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 298
Query: 217 SLAKPQADQKTSGGS 231
+LA+ + D++ S
Sbjct: 299 ALAQRKEDRRAQLAS 313
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FI N+ R + + G ++S ++ D + ++G+ F+ + A+ + +
Sbjct: 30 IFIKNLDRVIDNKSVYDTFSLFG-NILSCKVATD--DEGNSKGYGFVHFETEHSAQTAIE 86
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAE----SSAASQVKALYVKNLPKDITQDRLKELFAHH 166
K++ L D V PR + + ++VKN + + Q++L +F+
Sbjct: 87 KVNG--MLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF 144
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+IT V+ G+ + +GFV FA++ +A +A++ ++G DC L+ +A +K
Sbjct: 145 GEITSAVVMTDAQGKPKG-FGFVAFADQDAAGQAVEKLNDSILEG--TDCKLSVCRAQKK 201
Query: 227 TS 228
+
Sbjct: 202 SE 203
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|348523085|ref|XP_003449054.1| PREDICTED: nucleolin-like isoform 4 [Oreochromis niloticus]
Length = 659
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCS-----------AAQAKHRLFIGNVPR 58
KG A+V F+T+ A + +EE E++G+ I A+ A L + N+
Sbjct: 371 KGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARASAASKTLVVNNLSF 430
Query: 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118
N E+ ++ K +SI + PQ + +GFAF+E+ + A+ + + +N +
Sbjct: 431 NATEEVLQSTFEK----AVSIRI---PQRDGRPKGFAFLEFESTDDAKDALENFNNTE-- 481
Query: 119 LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
++ + + ++ R+ + K L+VK L +D T++ LK+ F G + ++
Sbjct: 482 IEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGLSEDTTEETLKDAF--EGAVAARIVTDRD 539
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + +GFV F+ A + E EIDG + AKP+ +
Sbjct: 540 TGSSKG-FGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDYAKPKGE 584
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------RLFIGNV 56
G KG+AF+ F + + A A+E N+ E++G+ I+ +Q++ LF+ +
Sbjct: 454 GRPKGFAFLEFESTDDAKDALENFNNTEIEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGL 513
Query: 57 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116
+ E+ ++ A G ++ +V D ++ ++GF F+++ N + +++ M +
Sbjct: 514 SEDTTEETLKDAF----EGAVAARIVTD-RDTGSSKGFGFVDFSNEDDCKAAKEAMEDG- 567
Query: 117 FKLDDNAPTVSWADPR 132
++D + T+ +A P+
Sbjct: 568 -EIDGSKVTLDYAKPK 582
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 36/178 (20%)
Query: 51 LFIGNVPRNWGEDD----MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA- 105
LF+GN+ + D+ +RK +K G + + L N+ F ++++ +
Sbjct: 246 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL-------GGNKKFGYVDFASEEDLQ 298
Query: 106 ---EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQ----VKALYVKNLPKDITQDR 158
E + +K+ + KL+ R+ E S S+ + L+VKNLP T D
Sbjct: 299 KGLELNGKKVMGQEVKLEK---------ARSKEGSQDSKKEKDARTLFVKNLPFSATADD 349
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEIDGQVL 214
LKE+F ++ +P PGQ S G +V F + A + ++ T+ E+ G+ +
Sbjct: 350 LKEIFKDA---VEIRVP---PGQNTSNKGIAYVEFKTEADAERTMEETQGSEVQGRSI 401
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 19/233 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK--------CSAAQAKHRLFIGNVP 57
+G + Y +V F A +A+ LN LKGK ++ C+ L++ N+
Sbjct: 56 TGRSLCYGYVNFYRPYDAYKALSNLNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLD 115
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ ++ +K G ++S ++V++ +++G+ F+++ + A +R + +
Sbjct: 116 ASIDSAGLQSLFSKFGT-ILSCKVVEE---HGKSKGYGFVQFDSEDSALAARTALHDTML 171
Query: 118 KLDDNAPTVSWADPRNAESSAAS----QVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K + VS ++ ++A S + LYVKNL KD+TQD +F+ G+I V
Sbjct: 172 K--EKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAV 229
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
I G+ R +GFV F A KA+ Y+++ + L A+ +A++K
Sbjct: 230 IMQDHNGKSRG-FGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAKAERK 281
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 34/253 (13%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------- 50
++ G++KGY FV F +++ A A L+ LK KK+ S K
Sbjct: 140 EEHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKFT 199
Query: 51 -LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
L++ N+ ++ +D + G +IS +++D + ++RGF F+++ + A+ +
Sbjct: 200 NLYVKNLSKDMTQDAFHNMFSAFGE-IISAVIMQD--HNGKSRGFGFVDFESPEDAKKAV 256
Query: 110 QKMSNPKFKLDDNAPTVSWA------------DPRNAESSAASQVKA--LYVKNLPKDIT 155
++ ++L+ V A + ++ ++ + KA LYVKNL I
Sbjct: 257 DALNG--YQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCID 314
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
D+L+ELF+ GKI + G R +GFV F+ A KAL G+ L
Sbjct: 315 NDKLQELFSCSGKIVSAKVMRYDNGASRG-FGFVCFSSPEEAKKALNALNGAVFQGKSLY 373
Query: 216 CSLAKPQADQKTS 228
++A+ + D++ +
Sbjct: 374 VAMAQCKRDRQLA 386
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KG+ ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ D+LK++F+ +G + + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ R +GFV F A +A+ E++G+++ A+ + +++T
Sbjct: 227 NGKSRG-FGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 42/299 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS------------AAQAKH--R 50
D +KGY FV F T+E A +AIE++N L +K+ A+AK
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + +D ++ +K G +SI ++ D ++RGF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYG-NAMSIRVMTD--ENGKSRGFGFVSFERHEDAQRAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPFGTITSAKV--MMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 219 AKPQAD----------QKTSGGSNSQKSALNPTYP-PHLGYGMVGGAYGALGAGYVPAG 266
A+ + + Q+ + +NP P P GY M A Y P
Sbjct: 368 AQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYYPTS 426
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|317008639|gb|ADU79247.1| GH13679p [Drosophila melanogaster]
Length = 202
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 8/87 (9%)
Query: 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199
S+VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++
Sbjct: 2 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVE 53
Query: 200 ALKNTEKYEIDGQVLDCSLAKPQADQK 226
A++ EI ++ SLAKP +D+K
Sbjct: 54 AMRGLNGKEIGASNIEVSLAKPPSDKK 80
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+QAI+ +N L KK+ AK ++
Sbjct: 186 GNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVY 245
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ + +++ K G V+S + +D ++RGF F+ + +H A + +++
Sbjct: 246 IKNIDESVSDEEFTKLFEPYGE-VVSATITRDEN--GKSRGFGFVNFASHESAAKAVEEL 302
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ +F K + + E ++ Q LYVKNL D+ D+L+
Sbjct: 303 NDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 362
Query: 161 ELFAHHGKITKVVI 174
ELF+ +G IT +
Sbjct: 363 ELFSSYGTITSAKV 376
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 103 GYAYVNYNNTADGERALEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDN 162
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ ++ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 163 KALHDTFSQFG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANQAIKSVNG--MLLNDK 217
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KN+ + ++ + +LF +G++ I +
Sbjct: 218 KVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDE 277
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+FA SA KA++ E G+ L
Sbjct: 278 NGKSRG-FGFVNFASHESAAKAVEELNDKEFHGKKL 312
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 25/104 (24%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G+++G+ FV F + E A++A+EELN E GKK+ AQ KH
Sbjct: 277 ENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARM 336
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L++ N+ + +D +R+ + G + S ++++D
Sbjct: 337 EKASKYQGVNLYVKNLTDDVDDDKLRELFSSYGT-ITSAKVMRD 379
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 35/269 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAK-HRLFI 53
SG++KGY FV F +E A +AIE+LN L K++ + +A +AK + +F+
Sbjct: 155 SGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFV 214
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +D+++ + G + S +++D +++ F F+ + N A + + ++
Sbjct: 215 KNLSESTTDDELKNTFGEFG-TITSAVVMRD--GDGKSKCFGFVNFENADDAARAVEALN 271
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
F DD V A ++ E++ Q LYVKNL I ++L
Sbjct: 272 GKNF--DDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKL 329
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KELF+ G IT + G R GFV F+ A +AL + + L +LA
Sbjct: 330 KELFSPFGTITSCKVMRDPNGLSRGS-GFVAFSTPEEASRALLEMNGKMVVSKPLYVTLA 388
Query: 220 KPQADQKTSGGSNSQKSALNPT-YPPHLG 247
+ + D++ +Q + + P PP +G
Sbjct: 389 QRKEDRRAR--LQAQFAQMRPVGMPPSVG 415
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 18/208 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S + GY +V F + A++A++ LN L + I+ + + +FI N+
Sbjct: 68 SRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLD 127
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
R + + G ++S ++ D ++ Q++G+ F+++ N A+ + +K++
Sbjct: 128 RAIDHKALHDTFSTFG-NILSCKVATD--SSGQSKGYGFVQFDNEESAQKAIEKLNG--M 182
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
L+D V + SAA + K ++VKNL + T D LK F G IT V+
Sbjct: 183 LLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVV- 241
Query: 176 PAKPGQERSR-YGFVHFAERSSAMKALK 202
+ G +S+ +GFV+F A +A++
Sbjct: 242 -MRDGDGKSKCFGFVNFENADDAARAVE 268
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D + ++ G+ ++ + N A +
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLG-QVVSVRVCRD-LTSRRSLGYGYVNFSNPQDAARALD 90
Query: 111 KMSNPKFKLDDNAPT---VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
++ F +N P S DP +S + +++KNL + I L + F+ G
Sbjct: 91 VLN---FTPLNNRPIRIMYSHRDPSIRKSGQGN----IFIKNLDRAIDHKALHDTFSTFG 143
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + GQ + YGFV F SA KA++ +++G +L+
Sbjct: 144 NILSCKVATDSSGQSKG-YGFVQFDNEESAQKAIE-----KLNGMLLN 185
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|270002294|gb|EEZ98741.1| hypothetical protein TcasGA2_TC001296 [Tribolium castaneum]
Length = 339
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGED 63
D+G K +AF+++ E A++A+ + + K +K+ + RL+ GN+PR ++
Sbjct: 67 DNGNNKPFAFISYHNDEDANKAVLFFHKFSIRKHRKLNVHLSVNNCRLYFGNIPREMTKE 126
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
D+ + ++ + ++ N NRG+AF+++ +H A ++++++ F
Sbjct: 127 DVMLNLLNFIEKIVKVLVLPSRCNTALNRGYAFVDFVSHTLAAFAKRQLELGLF-WGGRH 185
Query: 124 PTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
TV WA +P Q+K L KN+P D ++ ++ + IT V +
Sbjct: 186 ITVEWAYREPL-VPPFIFLQIKCLIFKNIPIDCSRCVFRKFLSLFVHITTV-----RRIY 239
Query: 182 ERSRYGFVHFAERSSAMKALKN 203
++ + FVHF +A A+K
Sbjct: 240 KKDSHAFVHFQSWEAAEIAIKT 261
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 129 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 188
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--TGKSKGFGFVSYEKHEDANKAVE 245
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 246 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 305
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ G IT+ + + G+ + +GFV F+ A KA+ + + L +L
Sbjct: 306 LRKEFSPFGSITRAEV-MLEDGRSKG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 363
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 364 AQRKEERK 371
>gi|167517167|ref|XP_001742924.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778023|gb|EDQ91638.1| predicted protein [Monosiga brevicollis MX1]
Length = 231
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 41 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100
+ A Q R+++G +P + GE ++ +A G + D Q N+++GF F+EY
Sbjct: 11 RLKAVQLLGRVYVGGIPFDAGEQEIAEAFRPFG-AIQQCAFTYD-QALNKHKGFCFVEYD 68
Query: 101 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-------ESSAASQVKA--LYVKNLP 151
A + ++M++ K T+ P NA E+ AA +A +YV ++
Sbjct: 69 APEAALLALEQMTSYNIK----GRTLKIGRPNNAPQALPYLETLAAKAAEAHRIYVSSIH 124
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEID 210
D+ + +K +F G +T+V++ P G+ R YG+V F E+ S A+K+ +++
Sbjct: 125 PDLGELEIKSVFESFGPVTRVILAPGAEGKGNHRGYGWVDFEEQKSVPDAIKSMNLFDLG 184
Query: 211 GQVLDCSL 218
GQ L S+
Sbjct: 185 GQFLRVSI 192
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------------SAAQAKHRLF 52
KG+ FV + E A A+E++ S +KG+ +K + A HR++
Sbjct: 60 KGFCFVEYDAPEAALLALEQMTSYNIKGRTLKIGRPNNAPQALPYLETLAAKAAEAHRIY 119
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
+ ++ + GE +++ GP V + L + +RG+ ++++
Sbjct: 120 VSSIHPDLGELEIKSVFESFGP-VTRVILAPGAEGKGNHRGYGWVDF 165
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 42/298 (14%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFI 53
SG++KGY FV F +E A A ++LN L K++ K +++
Sbjct: 156 SGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYV 215
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + ++D++ + GP + S +++D +++ F F+ + N A S + ++
Sbjct: 216 KNLLESTTDEDLKNIFGEYGP-ITSAVVMQD--GDGKSKCFGFVNFENADDAARSVEALN 272
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A + E+ Q LYVKNL I D+L
Sbjct: 273 GKKF--DDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKL 330
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
+ELF+ G IT + G R GFV F+ A +AL + + + L +LA
Sbjct: 331 RELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASRALADMNGKMVASKPLYVALA 389
Query: 220 KPQADQKTSGGSNSQKSALNP-TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+ + D++ +Q S + P P +G M GA G G Q + YG+G
Sbjct: 390 QRKEDRRAR--LQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLG-------QQLFYGQG 438
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGE 62
GY +V + + A++A++ LN L GK I+ + +FI N+ +
Sbjct: 74 GYGYVNYGNTQDAARALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDN 133
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + Q++G+ F+++ N A+ + K++ L+D
Sbjct: 134 KALYDTFSTFG-AILSCKIATDA--SGQSKGYGFVQFDNEESAKNATDKLNG--MLLNDK 188
Query: 123 APTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V + SA ++ K +YVKNL + T + LK +F +G IT V+ G
Sbjct: 189 QVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDG 248
Query: 181 QERSRYGFVHFAERSSAMKALK--NTEKYE 208
+ + +GFV+F A ++++ N +K++
Sbjct: 249 KSKC-FGFVNFENADDAARSVEALNGKKFD 277
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +K + + +Q + +FI N+
Sbjct: 98 GYAYVNYLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDH 157
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G V+S ++ D ++RGF F+ Y A+ + + ++ L+D
Sbjct: 158 KALHDTFAAFG-NVLSCKVATDENG--RSRGFGFVHYDTAEAADTAIKAVNG--MLLNDK 212
Query: 123 APTV----SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V S + + SQ LYVKNL ++T D ++FA G++T V+ +
Sbjct: 213 KVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDE 272
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV+F + SA A+ E++G+ L + A+ +A+++
Sbjct: 273 EGKSKG-FGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAERE 319
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 30/223 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G ++G+ FV + T E A AI+ +N L KK+ +K
Sbjct: 179 ENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTN 238
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++ N+ +D+ K G V S + KD + +++GF F+ + +H A+ +
Sbjct: 239 LYVKNLDTEVTDDEFNDMFAKFGE-VTSAVVQKDEE--GKSKGFGFVNFKDHESAQAAVD 295
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA------------LYVKNLPKDITQDR 158
+ + + T + E S +A LY+KNL D+ D+
Sbjct: 296 ALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDK 355
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
L+ F G IT I + G + +GFV ++ A KA+
Sbjct: 356 LRAEFEPFGTITSCKIMRDEKGTSKG-FGFVCYSSPEEATKAV 397
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
+ G++KG+ FV F+ E A A++ L+ EL GKK+ + AQ K
Sbjct: 272 EEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKM 331
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100
L+I N+ + +D +R G + S ++++D + ++GF F+ Y
Sbjct: 332 EKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFG-TITSCKIMRDEKGT--SKGFGFVCYS 388
Query: 101 NHACAEYSRQKMSN 114
+ A + +M+N
Sbjct: 389 SPEEATKAVAEMNN 402
>gi|440913256|gb|ELR62731.1| Nucleolin, partial [Bos grunniens mutus]
Length = 714
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-----HR----------- 50
G++KG A++ F+T+ A + +EE E+ G+ I K HR
Sbjct: 430 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGES 489
Query: 51 --LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
L + N+ + E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 490 KTLVLSNLSYSATEETLQEVFEKA-------THIKVPQNQNGKSKGYAFIEF---ASFED 539
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 540 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 597
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 598 GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 654
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 523 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 582
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G I +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 583 LSEDTTEETLKESFD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 637
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 638 --EIDGNKVTLDWAKPK 652
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 284 RKKEMAKQKA----APEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLFAKND 339
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ AE + + K+ N + P+
Sbjct: 340 LAVVDVRI-------GVSRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 387
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 388 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKT 442
Query: 194 RSSAMKALKNTEKYEIDGQVLDC 216
+ A K L+ + EIDG+ +
Sbjct: 443 EADAEKTLEEKQGTEIDGRSISL 465
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 54/373 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----KCSAAQ-----AKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ KC + AK + F
Sbjct: 139 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTN 198
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ +K G +S++++ DP + +++GF F+ + H A +
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYG-KTLSVKVMTDP--SGKSKGFGFVSFERHEDANKAVD 255
Query: 111 KMS----NPKF--------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
M+ N K K++ A + E + Q LY+KNL I ++
Sbjct: 256 DMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 315
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 316 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 370
Query: 216 CSLAKPQADQKTSGGSN-SQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYG 274
+LA+ + ++K + Q+ A P + A G VP ++P Y
Sbjct: 371 VALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQTQSRPTYY- 429
Query: 275 RGAAPGGMAML---PMLLPDGR------IGYVLQQPGVQQ---HNPPPQPRSGRGGAGSS 322
AP MA + P GR + L+Q G +Q H PP + RG +
Sbjct: 430 ---APNHMAQIRPGPRWQQTGRPQGFQPMPNTLRQSGPRQSLRHMPPSNTQGTRGIPSVT 486
Query: 323 SSGGRRSTDNGRG 335
G S+ G
Sbjct: 487 QRVGVSSSTQTMG 499
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ R+
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D + RG+AF+ + N A+ + ++M+ K D
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDHGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCR 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ ++ E+ + A + +Y+KN ++ +RL E+F+ +GK V +
Sbjct: 167 LFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A +A++ +I+GQ+L A+ +A+++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 42/239 (17%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELN-----SCEL-----KGKKIKCSAAQAKHRLFIG 54
D ++GYAFV F+ + A +AIEE+N C L K +K + + Q K F
Sbjct: 132 DDHGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNKAHEFTN 191
Query: 55 NVPRNWGE--DDMR--KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+ DD R + +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGDEMDDERLNEVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKRAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K + A + E Q LY+KNL + I ++
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V K QE R +G + F+ A KA+ E++G++L
Sbjct: 309 LRREFSSFGSISRV-----KVMQEEGRSKGFGLICFSSAEEATKAMT-----EMNGRIL 357
>gi|195052284|ref|XP_001993272.1| GH13720 [Drosophila grimshawi]
gi|193900331|gb|EDV99197.1| GH13720 [Drosophila grimshawi]
Length = 421
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107
+ +LF+G + ++++ + + G +I ++K+ ++ ++RGF F+ + + A +
Sbjct: 6 RGKLFVGGLSWETTQENLSRYFCRFGD-IIDCVVMKNNESG-RSRGFGFVTFADPANVNH 63
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
Q N LD +PR + +++ LP ++T+ L+ F +G
Sbjct: 64 VLQ---NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFGRYG 120
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
K+T+VVI + ++ +GF+ F E SS ++ + N ++G+ ++ A+P +
Sbjct: 121 KVTEVVIMYDQEKKKSRGFGFLSFEEESS-VEHVTNERYINLNGKQVEIKKAEP---RDG 176
Query: 228 SGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 259
SGG NS SA VGGAYG LG
Sbjct: 177 SGGQNSNNSA-------------VGGAYGKLG 195
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK---CSAAQAK-------HR 50
MK +SG ++G+ FVTF + ++ L G+ I C+ + ++
Sbjct: 39 MKNNESGRSRGFGFVTFADPANVNHVLQN-GPHTLDGRTIDPKPCNPRTLQKPKKGGGYK 97
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +P N E D+R + G V + ++ D Q ++RGF F+ + + E+
Sbjct: 98 VFLGGLPSNVTETDLRTFFGRYGK-VTEVVIMYD-QEKKKSRGFGFLSFEEESSVEH--- 152
Query: 111 KMSNPKF-KLDDNAPTVSWADPRNAESSAASQVKAL 145
++N ++ L+ + A+PR+ S A+
Sbjct: 153 -VTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSAV 187
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 101/235 (42%), Gaps = 31/235 (13%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVP------------- 57
G A V F+ ++ A++A+E L +++ K++ ++ + LFIGN+
Sbjct: 294 GLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKMDKQLLTA 353
Query: 58 ---------------RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 102
R W ++ + K K G+++ E+ D N N NRGF F + +
Sbjct: 354 RPSGNPNTLFIGGLNRTWKKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDV 413
Query: 103 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
+ + K K + +N + WA+ R + + +Y+ L + + + L++
Sbjct: 414 DSCKAAHAKYYKDKLTILENKVLIDWAETR---GNKQDDERGVYITGLDEKVDEAGLRKH 470
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
F +G I KVV+ +R + ++++ +A +++ + G++ S
Sbjct: 471 FGSYGTIVKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTS 525
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD ++ ++ G +S+++++DP + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGK-TLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LK+LF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQ 273
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 49/326 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIG 54
SG+++GY FV F +E A AI++LN L K++ KH +++
Sbjct: 161 SGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVK 220
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + E+D++ + G + S +++D +++ F F+ + N A + + ++
Sbjct: 221 NLSESTTEEDLKNIFGEYGE-ITSAVIMRDAD--GKSKCFGFVNFENTDAAAKAVESLNG 277
Query: 115 PKFKLDDNAPTVSWADPRNA-ESSAASQVKA-------------LYVKNLPKDITQDRLK 160
K+DD V A ++ E SQ + LY+KNL I+ + LK
Sbjct: 278 K--KIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLK 335
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
ELF+ G IT + G R GFV F+ A +AL + + L +LA+
Sbjct: 336 ELFSDFGMITSCKVMRDPSGISRGS-GFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQ 394
Query: 221 PQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP 279
+ +++ +Q S + P P +G M + GA G G Q +YG+G
Sbjct: 395 RKEERRAR--LQAQFSQMRPVAMAPSVGPRMPIYSPGAPGMG-------QQFLYGQGPP- 444
Query: 280 GGMAMLPMLLPDGRIGYVLQQ-PGVQ 304
M+P P G GY Q PG++
Sbjct: 445 ---TMIP---PQGGFGYQQQLVPGIR 464
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 105/212 (49%), Gaps = 21/212 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V + + + A++A++ LN K I+ + HR +FI N+ +
Sbjct: 79 GYGYVNYTSPQDAARALDILNFTPFNNKPIRIMYS---HRDPSIRKSGTGNIFIKNLDKT 135
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q+RG+ F+++ N A+ + K++ L
Sbjct: 136 IDHKALHDTFSSFG-NILSCKVATD--SSGQSRGYGFVQFDNEEAAQNAIDKLNG--MLL 190
Query: 120 DDNAPTVSWADPRNAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
+D V ++ SA++ + +YVKNL + T++ LK +F +G+IT VI
Sbjct: 191 NDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDA 250
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEID 210
G+ + +GFV+F +A KA+++ +ID
Sbjct: 251 DGKSKC-FGFVNFENTDAAAKAVESLNGKKID 281
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ N + + ++G V+S+ + +D ++ G+ ++ Y + A +
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVG-QVVSVRVCRD-LTTRRSLGYGYVNYTSPQDAARALD 96
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
++ F S DP +S + +++KNL K I L + F+ G I
Sbjct: 97 ILNFTPFNNKPIRIMYSHRDPSIRKSGTGN----IFIKNLDKTIDHKALHDTFSSFGNIL 152
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
+ GQ R YGFV F +A A+
Sbjct: 153 SCKVATDSSGQSRG-YGFVQFDNEEAAQNAI 182
>gi|193788267|dbj|BAG53161.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 349 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 408
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 409 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 465
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 466 CNKREIEGRAIRLELQGPRGSPNAGSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 523
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 524 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 573
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 442 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNAGSQPSKTLFVKG 501
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 502 LSEDTTEETLKESF----DGSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 556
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 557 --EIDGNKVTLDWAKPK 571
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 26/229 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 203 RKKEMAKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 258
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 259 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 306
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 307 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 361
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
+ A K + + EIDG+ + + +Q GG NS S + T
Sbjct: 362 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 410
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGED 63
YA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 41 YAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNK 100
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 101 ALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRK 154
Query: 124 PTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
V R AE A A + +Y+KN D+ +RLKELF +GK V +
Sbjct: 155 VFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPT 214
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F + A KA++ +I+G+++ A+ + +++
Sbjct: 215 GKSKG-FGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQ 260
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T++ A +AIE++N L +K+ + + AK + F
Sbjct: 120 DENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 179
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+G+D +++ K G +S++++ DP +++GF F+ + H A + +
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYG-KTLSVKVMTDP--TGKSKGFGFVSFEKHEEANKAVE 236
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E + Q LY+KNL I ++
Sbjct: 237 EMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 296
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 297 LRKEFSPFGSITS-----AKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 351
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 352 VALAQRKEERK 362
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + E +A+EELN +KGK + +Q + +FI N+
Sbjct: 90 GYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L++
Sbjct: 150 KALHDTFAAFG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D++ + +ELF HG IT I +
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDE 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV++ + +A A+ + GQ L
Sbjct: 265 QGKSRG-FGFVNYIKHEAASAAVDALNDTDFRGQKL 299
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ K +A ++
Sbjct: 173 GNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIY 232
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + +++ R+ K G + S + +D Q ++RGF F+ Y H A + +
Sbjct: 233 VKNIDLDVSDEEFRELFEKHG-DITSASIARDEQ--GKSRGFGFVNYIKHEAASAAVDAL 289
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ F K + + E + Q LY+KNL D+ ++L+
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 161 ELFAHHGKITKV-VIPPAKPGQERSR 185
++F G IT V+ A P ERS
Sbjct: 350 DMFTPFGTITSAKVMRDAMPA-ERSE 374
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 25/104 (24%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
+ G+++G+ FV + E AS A++ LN + +G+K+ AQ KH
Sbjct: 264 EQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL 323
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ + ++ +R T G + S ++++D
Sbjct: 324 EKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGT-ITSAKVMRD 366
>gi|426221705|ref|XP_004023200.1| PREDICTED: LOW QUALITY PROTEIN: nucleolin [Ovis aries]
Length = 724
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-----HR----------- 50
G++KG A++ F+T+ A + +EE E+ G+ I K HR
Sbjct: 440 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGES 499
Query: 51 --LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
L + N+ + E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 500 KTLVLSNLSYSATEETLQEVFEKAT-------HIKVPQNQNGKSKGYAFIEF---ASFED 549
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 550 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 607
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 608 GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 664
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 533 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 592
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G I +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 593 LSEDTTEETLKESFD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 647
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 648 --EIDGNKVTLDWAKPK 662
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LFIGN+ N +++ ++ I
Sbjct: 294 RKKEMAKQKA----APEAKKQKVEGTEPTTSFNLFIGNLNFNKSAPELKTGISDIFAKND 349
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ AE + + K+ N + P+
Sbjct: 350 LAVVDVRI-------GVSRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 397
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 398 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKT 452
Query: 194 RSSAMKALKNTEKYEIDGQVLDC 216
+ A K L+ + EIDG+ +
Sbjct: 453 EADAEKTLEEKQGTEIDGRSISL 475
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNW 60
+ YA+V F+ + A A++ +N +KGK ++ +Q L F+ N+ ++
Sbjct: 51 SSNYAYVNFQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSI 110
Query: 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120
+ V+ G ++S ++V D N ++G+ F+ + H AE + +KM+ L+
Sbjct: 111 NNKALYDTVSAFG-NILSCKVVCD---ENGSKGYGFVHFETHEAAERAIEKMNG--MLLN 164
Query: 121 DNAPTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176
D V R AE A A + +Y+KN +D+ +RLK+LF G V +
Sbjct: 165 DRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ G+ + +GFV F + A KA+ E+ G+ + A+ + +++T
Sbjct: 225 DESGKSKG-FGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQT 274
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFEKHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL I +R
Sbjct: 250 EMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKAFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|331284195|ref|NP_001193589.1| nucleolin [Bos taurus]
gi|296490214|tpg|DAA32327.1| TPA: nucleolin [Bos taurus]
Length = 720
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 33/238 (13%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-----HR----------- 50
G++KG A++ F+T+ A + +EE E+ G+ I K HR
Sbjct: 436 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGES 495
Query: 51 --LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEY 107
L + N+ + E+ +++ K +K PQN N +++G+AFIE+ A E
Sbjct: 496 KTLVLSNLSYSATEETLQEVFEKAT-------HIKVPQNQNGKSKGYAFIEF---ASFED 545
Query: 108 SRQKM-SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 166
+++ + S K +++ A + PR + ++ + K L+VK L +D T++ LKE F
Sbjct: 546 AKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--D 603
Query: 167 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G I ++ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 604 GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 660
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 529 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 588
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G I +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 589 LSEDTTEETLKESFD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 643
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 644 --EIDGNKVTLDWAKPK 658
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 290 RKKEMAKQKA----APEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLFAKND 345
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + +R F ++++ AE + + K+ N + P+
Sbjct: 346 LAVVDVRI-------GVSRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 393
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 394 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKT 448
Query: 194 RSSAMKALKNTEKYEIDGQVLDC 216
+ A K L+ + EIDG+ +
Sbjct: 449 EADAEKTLEEKQGTEIDGRSISL 471
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + E +A+EELN +KGK + +Q + +FI N+
Sbjct: 90 GYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L++
Sbjct: 150 KALHDTFAAFG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D++ D ++LF HG IT I A+
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASI--AR 262
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
Q +SR +GFV++ + +A A+ + GQ L
Sbjct: 263 DDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKL 299
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 29/190 (15%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ K +A ++
Sbjct: 173 GNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIY 232
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + +DD R K G + S + +D Q ++RGF F+ Y H A + +
Sbjct: 233 VKNIDLDVSDDDFRDLFEKHG-DITSASIARDDQ--GKSRGFGFVNYIKHEAASAAVDAL 289
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ F K + + E + Q LY+KNL D+ ++L+
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 161 ELFAHHGKIT 170
++F G IT
Sbjct: 350 DMFTPFGTIT 359
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 25/104 (24%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D G+++G+ FV + E AS A++ LN + +G+K+ AQ KH
Sbjct: 264 DQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL 323
Query: 51 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ + ++ +R T G + S ++++D
Sbjct: 324 EKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGT-ITSAKVMRD 366
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 138/307 (44%), Gaps = 34/307 (11%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A+++IE++N L GKK+ + A + + F
Sbjct: 133 DENGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-----HACA 105
+N+G+ DD +R+ + G ++S ++++D ++ +N+GF F+ + + +AC
Sbjct: 193 VFVKNFGDELDDEGLREMFERYG-KIVSHKVMQD-DHSGRNKGFGFVCFEDPIDAENACD 250
Query: 106 EYSRQKMS-------NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+ + + ++ + K++ A + + AE + Q LYVKNL + +R
Sbjct: 251 DLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDER 310
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 311 LRKEFMPFGTITSAKV--MSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 368
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA 278
A+ + D+K S + P G +G Y + + Y P Q G AA
Sbjct: 369 AQRKEDRKAHLASQFMQRMSGLRLP---GQAQMGQMYQSNVSAYFPQTVPQTQ-RGFFAA 424
Query: 279 PGGMAML 285
P +A +
Sbjct: 425 PTQVAQV 431
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 14/214 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KG+ I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDSMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLD 120
M + G ++S ++V D N ++G+ F+ + A S +K++ K
Sbjct: 113 KAMYDTFSAFG-DILSCKVVCD---ENGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKV 168
Query: 121 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
+S + +A + ++VKN ++ + L+E+F +GKI +
Sbjct: 169 YVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHS 228
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+GFV F + A A + +I+G++L
Sbjct: 229 GRNKGFGFVCFEDPIDAENACDDLNMKDINGRIL 262
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|443725988|gb|ELU13330.1| hypothetical protein CAPTEDRAFT_219071 [Capitella teleta]
Length = 453
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107
K ++F+G + + M K ++ G VI ++K+PQ ++RGF F+ + + +C
Sbjct: 7 KGKIFVGGLSWDTTHATMLKYFSRYGE-VIDCVVMKNPQT-GKSRGFGFVTFKDPSCV-- 62
Query: 108 SRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFA 164
+ ++N LD +PR+ SA + + +++ LP +IT+D +KE FA
Sbjct: 63 -KTVLANQPHVLDSRQIDPKQCNPRSMNKGGKSAENSKRKVFMGGLPSNITEDEIKEHFA 121
Query: 165 HHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
G++ VVI +ERSR +GF+ F S K + + G+ ++C A+P+
Sbjct: 122 EFGEVQDVVI-MVDQDKERSRGFGFLTFDCEESVEKVISQ-HYVPVKGKQVECKRAQPR 178
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 14/111 (12%)
Query: 1 MKGKDSGEAKGYAFVTFR----TKELASQAIEELNSCELKGKKIKC--------SAAQAK 48
MK +G+++G+ FVTF+ K + + L+S ++ K+ SA +K
Sbjct: 40 MKNPQTGKSRGFGFVTFKDPSCVKTVLANQPHVLDSRQIDPKQCNPRSMNKGGKSAENSK 99
Query: 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99
++F+G +P N ED++++ + G V + ++ D Q+ ++RGF F+ +
Sbjct: 100 RKVFMGGLPSNITEDEIKEHFAEFGE-VQDVVIMVD-QDKERSRGFGFLTF 148
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 42/298 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 219 AKPQAD----------QKTSGGSNSQKSALNPTYP-PHLGYGMVGGAYGALGAGYVPA 265
A+ + + Q+ + +NP P P GY M A Y PA
Sbjct: 368 AQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPA 425
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+V+ A+ + +++
Sbjct: 227 TGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDP--TGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT AK E R +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITS-----AKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + + G + Y FVHF + +A KA++
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE 156
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQT 274
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 40/238 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQ 156
+M+ +L+ V A R + Q+K LYVKNL I
Sbjct: 250 EMNGK--ELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+RL++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 308 ERLRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPVRIMWSQRDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + YGFVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YGFVHFETQEAAERAIE-----KMNGMLLN 164
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 32/255 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D G +KGY FV F T+ A AIE++N L KK+ Q + +
Sbjct: 180 DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTN 239
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+ N + ++ + +K G + S ++ D Q + +GF F+ + + A + +
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGE-ITSAVVMTDAQ--GKPKGFGFVAFADQDAAGQAVE 296
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESS-------AASQVKA-------LYVKNLPKDITQ 156
K+++ + D +V A ++ S+ A Q + LYVKN+ +D+
Sbjct: 297 KLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLND 356
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
D L++ F+ G IT + + G+ + +GFV F + A A+ + I + L
Sbjct: 357 DGLRDHFSSFGTITSAKVMVDENGRSKG-FGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Query: 217 SLAKPQADQKTSGGS 231
+LA+ + D++ S
Sbjct: 416 ALAQRKEDRRAQLAS 430
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 109/229 (47%), Gaps = 20/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGE 62
GYA+V F+ A +A++ +N + G+ ++ +Q A R +FI N+ R
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDN 158
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + ++G+ F+ + A+ + +K++ L D
Sbjct: 159 KSVYDTFSLFG-NILSCKVATD--DEGNSKGYGFVHFETEHSAQTAIEKVNG--MLLSDK 213
Query: 123 APTVSWADPRNAE----SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR + + ++VKN + + Q++L +F+ G+IT V+
Sbjct: 214 KVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDA 273
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV FA++ +A +A++ ++G DC L+ +A +K+
Sbjct: 274 QGKPKG-FGFVAFADQDAAGQAVEKLNDSILEG--TDCKLSVCRAQKKS 319
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L+IG++ + E + + + GP V+SI + +D + + G+A++ + A AE +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGP-VLSIRVCRD-NTSRLSLGYAYVNFQQPADAERALD 116
Query: 111 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
M+ F++ P + W+ A A + +++KNL + I + + F+ G I
Sbjct: 117 TMN---FEVIHGRPMRIMWSQRDPAARRAGN--GNIFIKNLDRVIDNKSVYDTFSLFGNI 171
Query: 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G + YGFVHF SA A++ +++G +L
Sbjct: 172 LSCKVATDDEGNSKG-YGFVHFETEHSAQTAIE-----KVNGMLL 210
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ + G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGY FV F T+E A++AIE +N L +K+ S A
Sbjct: 133 DEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N ++ ++ +++ + G +S+ ++KD + ++RGF F+ Y +H A+ +
Sbjct: 193 VYIKNFGEDFTDEKLKEVFSAFG-RTLSVRVMKDEK--GRSRGFGFVNYAHHEDAQKAVN 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + +L+ D + Q LYVKNL I +R
Sbjct: 250 EMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ FA +G IT + G + +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFAPYGTITSAKV--MTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRREERK 375
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA+V F+ A A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYVNFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + + +G+ F+ + A + + M+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCDEKGS---KGYGFVHFETQEAANRAIETMNG--MLLNDR 166
Query: 123 APTVSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S A + +Y+KN +D T ++LKE+F+ G+ V + +
Sbjct: 167 KVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV++A A KA+ EI+G++L
Sbjct: 227 KGRSRG-FGFVNYAHHEDAQKAVNEMNGKEINGKIL 261
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 85/185 (45%), Gaps = 8/185 (4%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGP-IMSIRVCRDIIT-RRSLGYAYVNFQQPADAECALD 70
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
M+ K S DP +S + +++KN+ + I L + F+ G I
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVGN----IFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 230
+ + G + YGFVHF + +A +A++ ++ + + K + +++ G
Sbjct: 127 SCKVVCDEKGSKG--YGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFG 184
Query: 231 SNSQK 235
S + K
Sbjct: 185 SKAMK 189
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 19/204 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GYA+V + T + ASQA+E LN +KGK I+ + HR +FI N+ ++
Sbjct: 68 GYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYS---HRDPSIRKSGAANIFIKNLEKS 124
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S +V D +A ++G+ F+++ A+ + +K+ N
Sbjct: 125 IDNKALHDTFSAFGT-ILSCRVVMD--DAGNSKGYGFVQFEKEESAQIAIEKV-NGMLIN 180
Query: 120 DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
D + + + +++ +YVKNL + T + L+++FA G I+ V+
Sbjct: 181 DRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDAD 240
Query: 180 GQERSRYGFVHFAERSSAMKALKN 203
G+ + +GFV+F A A++N
Sbjct: 241 GKSKC-FGFVNFENVDDAANAVEN 263
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 23/243 (9%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKHRLFI 53
D+G +KGY FV F +E A AIE++N + +++ ++++ + +++
Sbjct: 149 DAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYV 208
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA--CAEYSRQK 111
N+ ++D+RK GP + S +++D ++ GF E + A E K
Sbjct: 209 KNLAEATTDEDLRKVFAGFGP-ISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGK 267
Query: 112 MSNPKF--------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF 163
+ N K K + A + + E Q LY+KN+ I ++L+ELF
Sbjct: 268 LINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELF 327
Query: 164 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223
A G +T + + GQ GFV F+ AM+A+ + + + L +LA+ +
Sbjct: 328 AVFGTVTSCKVMKSPQGQSMGS-GFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKE 386
Query: 224 DQK 226
+++
Sbjct: 387 ERR 389
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 102/202 (50%), Gaps = 16/202 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC-------SAAQAKH-RLFIGNVPRNWGE 62
GYA+V F + A+ A+E LN L GK I+ S ++ H +FI N+ +
Sbjct: 65 GYAYVNFSNPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDN 124
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+++ GP V+S ++ D N Q++G+ F+++ N A+ + +++ ++D
Sbjct: 125 KALQETFASFGP-VLSCKVAVD--NNGQSKGYGFVQFENEEAAQSAINRLNG--MLINDK 179
Query: 123 APTVS--WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V E++ + + +YVKNL + + + LK+ F+++G IT ++ + G
Sbjct: 180 EVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSG 239
Query: 181 QERSRYGFVHFAERSSAMKALK 202
+ + +GFV+F SA A++
Sbjct: 240 KSKG-FGFVNFQSPDSAAAAVE 260
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 52/326 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGK------------KIKCSAAQAKHRLF 52
++G++KGY FV F +E A AI LN + K +I+ + + ++
Sbjct: 146 NNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVY 205
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ ++D++K + G + S ++KD + +++GF F+ + + A + +K+
Sbjct: 206 VKNLSETTSDEDLKKFFSNYG-SITSAIVMKD--QSGKSKGFGFVNFQSPDSAAAAVEKL 262
Query: 113 SNPKFKLDDNAPTVSWAD---PRNAE---------SSAASQVKA--LYVKNLPKDITQDR 158
+ F +D V A R AE +S ++KA LY+KNL I ++
Sbjct: 263 NGTTF--NDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEK 320
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKELF+ G IT + + G + GFV F+ A +AL I + L ++
Sbjct: 321 LKELFSEFGSITSCKVMLDQQGLSKGS-GFVAFSTPEEASRALNGMNGKMIGKKPLYVAV 379
Query: 219 AKPQADQKT---SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGR 275
A+ + ++K + + Q L+P + G+ G GA P Q + +G+
Sbjct: 380 AQRREERKARLQAHFTQIQAPGLSP-----MPSGLPGYHPGA------PRLAPQQLFFGQ 428
Query: 276 GAA------PGGMAMLPMLLPDGRIG 295
G A P G LLP R G
Sbjct: 429 GTAGMMPPQPAGYGFQQQLLPGMRAG 454
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 26/235 (11%)
Query: 11 GYAFVTFRT-------KELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGN 55
GYA++ F+ + A +A++ +N LKG+ I+ +Q +FI N
Sbjct: 58 GYAYINFQQPADGEEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 117
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + + + G ++S ++V D + RGF F+ + H A+ + M+
Sbjct: 118 LEDSIDNKALYDTFSTFG-NILSCKVVCDEHGS---RGFGFVHFETHEAAQQAINTMNG- 172
Query: 116 KFKLDDNAPTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITK 171
L+D V R AE A A + +YVKNLP D+ + L++LF+ GK+
Sbjct: 173 -MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLS 231
Query: 172 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
V + G R +GFV+F + A KA+ + E+ G++L A+ + +++
Sbjct: 232 VKVMRDNSGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 285
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 145 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 204
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 205 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 261
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 262 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 321
Query: 159 LKELFAHHGKIT 170
L++ F+ +G IT
Sbjct: 322 LRKEFSPYGVIT 333
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|410922589|ref|XP_003974765.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 386
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 120/309 (38%), Gaps = 46/309 (14%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----------KHRLFIGNVPRNWG 61
Y FV F A+ ++ +N ++ GK++K + A +F+G++
Sbjct: 48 YCFVEFYEHRHAAASLAAMNGRKIMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEIT 107
Query: 62 EDDMRKAVTKIGP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN------ 114
DD++ A GP G IS V +++G+ F+ ++N AE + Q+M
Sbjct: 108 TDDVKAA---FGPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 164
Query: 115 -------------PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 161
PK + N+ + + D N S + V Y + +T+ +++
Sbjct: 165 QIRTNWATRKPPAPKTTYESNSKQLCFDDVVNQSSPSNCTV---YCGGVSTGLTEQLMRQ 221
Query: 162 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
F+ G I ++ + P K Y FV F SA A+ + I+G V+ C K
Sbjct: 222 TFSPFGPIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGSSIEGHVVKCYWGKE 275
Query: 222 QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAY--GALGAGYVPAGFAQPM--VYGRGA 277
D + ++P YG G Y G + YVP G+ P VYG
Sbjct: 276 TPDMMNTMQQMPMPQQNKMSFPAAQPYGQWGQWYGNGHQISQYVPNGWQVPTYGVYGHAW 335
Query: 278 APGGMAMLP 286
G LP
Sbjct: 336 NQQGFNHLP 344
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 11/192 (5%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++GN+ R+ E + + T+IGP S +++ D N + F+E+Y H A S
Sbjct: 9 LYVGNLSRDVTEPLILQVFTQIGP-CKSCKMIVDTAG---NDPYCFVEFYEHRHAAASLA 64
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
M+ K + V+WA ++ S ++V +L +IT D +K F G+I+
Sbjct: 65 AMNGRK--IMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTDDVKAAFGPFGRIS 122
Query: 171 KV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA--KPQADQKT 227
V+ G+ + YGFV F + A A++ + G+ + + A KP A KT
Sbjct: 123 DARVVKDMATGKSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP-KT 180
Query: 228 SGGSNSQKSALN 239
+ SNS++ +
Sbjct: 181 TYESNSKQLCFD 192
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KVLYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFG-KTLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAADKAIE-----KMNGMLLN 164
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A++AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE +++R+ ++ G +S+++++D + +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRD--CSGKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAANKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + L+ELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ E+ G+ + A+ + +++
Sbjct: 227 SGKSKG-FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQ 273
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
I + + G + Y FVHF + +A KA++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQEAANKAIE-----KMNGMLLN 164
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 173 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ + E++ R+ K G + S L +D + ++RGF F+ Y H A+ + +M
Sbjct: 233 IKNLDQEISEEEFRQMFEKFGE-ITSATLSRDQEG--KSRGFGFVNYSTHDSAQAAVDEM 289
Query: 113 SNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ + K + + E ++ Q LYVKNL DI ++L+
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 161 ELFAHHGKITKVVI 174
E+FA +G IT +
Sbjct: 350 EMFAPYGTITSAKV 363
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 90 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 150 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KNL ++I+++ +++F G+IT + +
Sbjct: 205 KVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+++ SA A+ E+ GQ L
Sbjct: 265 EGKSRG-FGFVNYSTHDSAQAAVDEMNDKEVKGQKL 299
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 18/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + A +A+E+LN +K K + +Q + +FI N+
Sbjct: 126 GYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDN 185
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D A+ +G+ F+ Y AE + + ++ +L+D
Sbjct: 186 KALHDTFAAFG-DILSCKVATDEHGAS--KGYGFVHYVTGESAEAAIKGVNG--MQLNDK 240
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V PR + +V++ LY+KNLP + T + L E+F G IT + +
Sbjct: 241 VVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDE 300
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
G+ R +GFV++ SA KA+ + G VL + A+ + ++
Sbjct: 301 HGKHRG-FGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTER 346
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 138/343 (40%), Gaps = 45/343 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA------QAK--------HR 50
+ G +KGY FV + T E A AI+ +N +L K + QAK
Sbjct: 207 EHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTN 266
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L+I N+P +++ + K GP + S + D ++RGF F+ Y NH A +
Sbjct: 267 LYIKNLPTETTTEELNEVFGKFGP-ITSAAVQSDEH--GKHRGFGFVNYENHESASKAVD 323
Query: 111 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 156
+ + +K N V+ A R E++ Q LYVKNL +
Sbjct: 324 ALHDKDYK--GNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDD 381
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++L+ F G IT + + G + +GFV F+ A KA+ + + L
Sbjct: 382 EKLQNEFTPFGTITSCKVMKDEKGTSKG-FGFVCFSSPDEATKAVAEMNGKMLGSKPLYV 440
Query: 217 SLA-KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGAL-------GAGYVPAGFA 268
SLA + + ++ SQ+S + G+ G YGA GA P
Sbjct: 441 SLAQRKEVRKQQLEAQMSQRSQMRSQQ--IAAAGIPGAPYGAPPNPMYFGGAAAYPPHGG 498
Query: 269 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ 311
+ M+Y P GM P P G++ + PG + P PQ
Sbjct: 499 RGMMYPPNGMPAGMPPRPRYAPPGQMA-PMGMPGGAPYPPHPQ 540
>gi|348667006|gb|EGZ06832.1| hypothetical protein PHYSODRAFT_353005 [Phytophthora sojae]
Length = 507
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109
+LF+G VPR EDD+R + GP + + +++D + +RG AF Y+ AE +
Sbjct: 37 KLFVGQVPRTMEEDDLRPVLEVFGP-LEDLVIIRD-KITGAHRGCAFASYFTRDAAEKAV 94
Query: 110 QKMSNPKFKLDDNAPTVSWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGK 168
Q++ N K L +++ R AE A ASQ L++ +PK + ++E+F G
Sbjct: 95 QELHN-KVTLPQ---SINPLQVRPAEGQAGASQEHKLFIGMIPKTADEAAIREVFELFGT 150
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213
I +V I + F+ F ERSSA+ A++ E++G V
Sbjct: 151 IEEVYILRHPATGQSKGCAFLKFKERSSALAAIE-----EVNGNV 190
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 74/143 (51%), Gaps = 14/143 (9%)
Query: 1 MKGKDSGEAKGYAFVTFRTKELASQAIEEL----------NSCELKGKKIKCSAAQAKHR 50
++ K +G +G AF ++ T++ A +A++EL N +++ + + A+Q +H+
Sbjct: 68 IRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAGASQ-EHK 126
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
LFIG +P+ E +R+ G + + +++ P Q++G AF+++ + A + +
Sbjct: 127 LFIGMIPKTADEAAIREVFELFGT-IEEVYILRHPATG-QSKGCAFLKFKERSSALAAIE 184
Query: 111 KMS-NPKFKLDDNAPTVSWADPR 132
+++ N + V +AD R
Sbjct: 185 EVNGNVTMDRGTSPLVVKFADSR 207
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 179 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ +D+ RK K G + S L +D + ++RGF F+ + H A+ + ++M
Sbjct: 239 IKNLDSEIDDDEFRKMFEKFGE-ITSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEM 295
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ + K + + E ++ Q LYVKNL DI ++L+
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 161 ELFAHHGKITKVVI 174
ELF +G IT +
Sbjct: 356 ELFGPYGTITSAKV 369
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 96 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDN 155
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 156 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 210
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KNL +I D +++F G+IT + +
Sbjct: 211 KVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ 270
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F+ SA A++ EI Q L
Sbjct: 271 EGKSRG-FGFVNFSTHESAQAAVEEMNDKEIRSQKL 305
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 17/213 (7%)
Query: 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGED 63
YA++ + A +A++ LN+ +KGK + +Q L FI N+ +
Sbjct: 51 YAYINYHNSTDAERALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHK 110
Query: 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123
+ + G ++S ++V D N ++GF F+ Y + AE + K++ + +N
Sbjct: 111 ALYDTFSAFG-NILSCKVVTD--ETNTSKGFGFVHYESQESAEKAIAKVNG---MMINNQ 164
Query: 124 PTVSWADPRNAESSAASQVK--ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181
+ E A +VK +++KNL +D+++ +L +L HGKIT + I + G+
Sbjct: 165 KVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGK 224
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ +GF +F +A A++N G+V+
Sbjct: 225 SKG-FGFANFEHADAAKGAVENENGKMFSGKVI 256
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKH-RLFI 53
++ +KG+ FV + ++E A +AI ++N + +K+ + + + K+ +FI
Sbjct: 131 ETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQEVKYTNVFI 190
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA--CAEYSRQK 111
N+ + E + + G + ++ ++ D + ++ GFA E+ + A E K
Sbjct: 191 KNLSEDVSEQQLTDLLQAHG-KITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENGK 249
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAASQVK----ALYVKNLPKDITQDRLKELFAHHG 167
M + K A R AE + K LY+KNL I D+L+ F+ +G
Sbjct: 250 MFSGKVIYVGRA---QKKLEREAELKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYG 306
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201
IT + G +GFV ++ A KA+
Sbjct: 307 TITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAV 340
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 37/275 (13%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T+E A QAI +N L +K+ S +++
Sbjct: 133 DDHGSRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVRAMEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E + + ++ G +S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 VYVKNLQMDIDEQGLEELFSQFGK-TLSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 111 KMSNPKFK--LDDNAPTVSWADPRNAESSAASQVKA-------------LYVKNLPKDIT 155
M+ + + L WA+ +N Q+K LYVKNL I
Sbjct: 250 DMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSID 309
Query: 156 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
+RL++ F+ +G IT + G +GFV F+ A KA+ + + L
Sbjct: 310 NERLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLY 367
Query: 216 CSLAKPQADQKTSGGSNSQKSALNPTYP---PHLG 247
+LA+ + ++K + + L+ + PHLG
Sbjct: 368 VALAQRKDERKAILTNQFMQQRLSNVWALGGPHLG 402
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A A++ +N +KG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAELALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + A+ + M+ L++
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDDHGS---RGFGFVHFETREAAQQAISTMNG--MLLNNR 166
Query: 123 APTVSWADPRNAESSAASQVKAL-----YVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
VS R E A V+A+ YVKNL DI + L+ELF+ GK V +
Sbjct: 167 KVFVSHFKSRQ-EREAELGVRAMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRD 225
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + E+ GQ+L A+ A+++
Sbjct: 226 DSGHSRG-FGFVNFEKHEEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQ 273
>gi|403278071|ref|XP_003930653.1| PREDICTED: nucleolin-like [Saimiri boliviensis boliviensis]
Length = 713
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 429 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 488
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 489 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 545
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 546 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 603
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 604 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 653
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 522 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 581
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 582 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 636
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 637 --EIDGNKVTLDWAKPK 651
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 26/230 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+ Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 283 RKKEMTKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 338
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 339 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 386
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 387 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 441
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPTY 242
+ A K + + EIDG+ + + +Q GG NS S + T
Sbjct: 442 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTL 491
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIKKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AI+++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 144/348 (41%), Gaps = 53/348 (15%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------LFIG 54
G++ GY FV F +E A AI++LN L K++ K +++
Sbjct: 154 GQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVK 213
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ E+D++K + G + S +++D ++R F F+ + N A S + ++
Sbjct: 214 NLSETTTEEDLKKIFGEYG-TITSAVVMRD--GNGKSRCFGFVNFENPDDAAQSVEALNG 270
Query: 115 PKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRLK 160
F D+ V A ++ E+ Q LYVKNL IT D+LK
Sbjct: 271 KTF--DEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLK 328
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
ELF+ G IT + G R GFV F+ A +AL + + L +LA+
Sbjct: 329 ELFSEFGTITSCKVMRDPNGVSRGS-GFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQ 387
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG---- 276
+ +++ +Q S + P P +G M G G G+ + YG+G
Sbjct: 388 RKEERRAR--LQAQYSQIRPAMAPPIGPRMPIYPPGTPGIGH-------QLFYGQGPPAI 438
Query: 277 --AAPG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 319
PG ++P + P+ + V QPG QQ P RSG G
Sbjct: 439 VPPQPGFGYQQQLVPGMRPNFFVPMV--QPG-QQAQRPSGRRSGAGAV 483
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA--------QAKHRLFIGNVP 57
S + GY +V + A+QAIE LN + GK I+ + ++I N+
Sbjct: 66 SRRSLGYGYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIYIKNLD 125
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + + G ++S ++ D + Q+ G+ F+++ N A+ + K++
Sbjct: 126 KAIDNKALHDTFSAFG-SILSCKVATD--SLGQSLGYGFVQFDNEESAKNAIDKLNG--M 180
Query: 118 KLDDNAPTVSWADPRNAESSAASQ--VKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175
L+D V + SA + +YVKNL + T++ LK++F +G IT V+
Sbjct: 181 LLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVV- 239
Query: 176 PAKPGQERSR-YGFVHFAERSSAMKALK 202
+ G +SR +GFV+F A ++++
Sbjct: 240 -MRDGNGKSRCFGFVNFENPDDAAQSVE 266
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 179 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ +D+ RK K G + S L +D + ++RGF F+ + H A+ + ++M
Sbjct: 239 IKNLDSEIDDDEFRKMFEKFGE-ITSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEM 295
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ + K + + E ++ Q LYVKNL DI ++L+
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 161 ELFAHHGKITKVVI 174
ELF +G IT +
Sbjct: 356 ELFGPYGTITSAKV 369
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 96 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDN 155
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 156 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 210
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KNL +I D +++F G+IT + +
Sbjct: 211 KVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ 270
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F+ SA A++ EI Q L
Sbjct: 271 EGKSRG-FGFVNFSTHESAQAAVEEMNDKEIRSQKL 305
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 101 GYAYVNYNSTPDGEKALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 160
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D A ++G+ F+ Y A + + ++ L++
Sbjct: 161 KALHDTFAAFG-NILSCKVAQDETGA--SKGYGFVHYETDEAAAQAIKHVNG--MLLNEK 215
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+ D+T + +ELF +G +T + +
Sbjct: 216 KVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQ 275
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F +A KA+ + GQ L
Sbjct: 276 EGKSRG-FGFVNFTTHEAAYKAVDELNGNDFRGQEL 310
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 151/394 (38%), Gaps = 99/394 (25%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+QAI+ +N L KK+ K +A
Sbjct: 182 ETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 241
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +++ R+ K G V S L +D + ++RGF F+ + H A +
Sbjct: 242 VYVKNISPDVTDNEFRELFEKYG-DVTSSSLARDQE--GKSRGFGFVNFTTHEAAYKAVD 298
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ F K + + E ++ Q LY+KNL D+ D+
Sbjct: 299 ELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDK 358
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR------------------------------- 185
L+++F+ G IT KV+ + G+E +
Sbjct: 359 LRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEKK 418
Query: 186 ----------YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 235
+GFV F+ A KA+ + I+ + L +LA+ + +K+ ++ Q
Sbjct: 419 GDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQA 478
Query: 236 SALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIG 295
GM P F QP V+ APG P +P G G
Sbjct: 479 RNQLRMQQAAAAAGM-------------PQQFMQPPVF---YAPGQQ---PGFIPQGGRG 519
Query: 296 YVLQQPGVQQHNPPPQPRSGRGGA--GSSSSGGR 327
QPG+ P P+ GR G G GGR
Sbjct: 520 MPFPQPGM------PLPQGGRPGQFPGYPQQGGR 547
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 56 QNSASLYVGELDPSVTEAMLFELFSQIG-AVASIRVCRDAV-TRRSLGYAYVNYNSTPDG 113
Query: 106 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 165
E + ++++ K S DP ++ + +++KNL I L + FA
Sbjct: 114 EKALEELNYTPIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDTFAA 169
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225
G I + + G + YGFVH+ +A +A+K+ ++ + + P+ D+
Sbjct: 170 FGNILSCKVAQDETGASKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDR 228
Query: 226 KT 227
++
Sbjct: 229 QS 230
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 123/297 (41%), Gaps = 42/297 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L +K+ + + AK + F
Sbjct: 101 DENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN 160
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 217
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + QV LYVKNL DI +R
Sbjct: 218 EMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDER 277
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 278 LRKAFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 219 AKPQAD----------QKTSGGSNSQKSALNPTYP-PHLGYGMVGGAYGALGAGYVP 264
A+ + + Q+ + +NP P P GY M A Y P
Sbjct: 336 AQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYP 392
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDD--MR 66
+ YA+V F+ + A +A++ +N +KGK ++ W + D +R
Sbjct: 51 SSSYAYVNFQHPKDAERALDTMNFDVIKGKPVRIM----------------WSQRDPSLR 94
Query: 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126
++ GV+ E N ++G+ F+ + H AE + +KM+ L+D V
Sbjct: 95 RS------GVVCDE--------NGSKGYGFVHFETHEAAERAIEKMNGT--LLNDRKVFV 138
Query: 127 ---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
R AE A A + +Y+KN +D+ +RLK+LF G V + + G+
Sbjct: 139 GRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 198
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
+ +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 199 KG-FGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQT 242
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 34/245 (13%)
Query: 6 SGEAKGYAFVTFRTKELASQAIE----ELNSCE------LKGKKIKCSAAQAKHRLFIGN 55
+G +KGY FV F T + A A+E +L CE L+ + AA++ ++I N
Sbjct: 135 AGNSKGYGFVQFETADGAKAALEMDGSKLGDCEVVVAPFLRRVDREVMAAKSFRNIYIKN 194
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ E D++ V G V S+ L ++A FA + + H A + ++
Sbjct: 195 LKATVAEADVKTTVETFG-KVNSLFL---SEHAPFPTKFALVAFEEHEAAVKAIAALNES 250
Query: 116 KFK-LDDNAPTVSWA-----DPRNAESSAASQV-----KALYVKNLPKDITQDRLKELFA 164
+ L + A + R+ E A+ + + LYVK+LP DIT DRL+E+FA
Sbjct: 251 EESGLTEKAAKLVVCRALSKSERDREKKKAASLYQNHGRNLYVKHLPDDITDDRLREIFA 310
Query: 165 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS---LAKP 221
GKIT I +P + FV F +R A AL++ ++G LD S L
Sbjct: 311 PFGKITSCAI-MKEPNGTFKGFAFVCFEDRQHASAALRS-----LNGHSLDNSKKLLYVS 364
Query: 222 QADQK 226
QA+QK
Sbjct: 365 QAEQK 369
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 114/253 (45%), Gaps = 25/253 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAA--------QAKHRLFIGNVPRNWG 61
GY +V F+T A + I+ LN + G++I+ + + +F+ +
Sbjct: 52 GYGYVNFQTPADAEKVIDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVN 111
Query: 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121
+++ A TK G V+S ++ D +A ++G+ F+++ A+ ++ + KL D
Sbjct: 112 AKELQAAFTKCG-RVLSCKVALD--SAGNSKGYGFVQF---ETADGAKAALEMDGSKLGD 165
Query: 122 NAPTVS-WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
V+ + + E AA + +Y+KNL + + +K GK+ + + P
Sbjct: 166 CEVVVAPFLRRVDREVMAAKSFRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPF 225
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDG------QVLDC-SLAKPQADQKTSGGSNS 233
+++ V F E +A+KA+ + E G +++ C +L+K + D++ ++
Sbjct: 226 P--TKFALVAFEEHEAAVKAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKKAASL 283
Query: 234 QKSALNPTYPPHL 246
++ Y HL
Sbjct: 284 YQNHGRNLYVKHL 296
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA++ F+ A +A++ +N +KG+ I+ +Q L FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVVCDDHGS---RGFGFVHFETHEAAQQAISTMNG--MLLNDR 166
Query: 123 APTVSWADP---RNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A+ +YVKNLP + + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F + A KA+ + ++ G++L A+ + +++
Sbjct: 227 SGHSRG-FGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQ 273
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 35/250 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D ++G+ FV F T E A QAI +N L +K+ + A A
Sbjct: 133 DDHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATAFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D ++ +RGF F+ + H A+ +
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFG-KMLSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQ 156
M+ ++ V A R + Q LYVKNL I
Sbjct: 250 DMNG--MQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216
++L++ F+ +G IT + G +GFV F+ A KA+ I + L
Sbjct: 308 EKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYV 365
Query: 217 SLAKPQADQK 226
+LA+ + ++K
Sbjct: 366 ALAQRKEERK 375
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 19/214 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KG+ ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + H AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETHEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ ++LKELF ++G V +
Sbjct: 167 KVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212
G+ + +GFV F A KA+ + E++G+
Sbjct: 227 TGKSKG-FGFVSFERHEDAQKAVDDMNGKELNGR 259
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 40/238 (16%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T E A +AIE++N L +K+ + + A+ R F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ GP +S+ ++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPA-LSVRVMTD--DTGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKFKLDDNAPTVSWA----DPRNAESSAASQVKA----------LYVKNLPKDITQ 156
M+ +L+ V A + +N Q+K LYVKNL +
Sbjct: 250 DMNGK--ELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDD 307
Query: 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+RL++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 308 ERLRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 16/233 (6%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 111 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVIKGRPLRIMWSQRDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
I + + G + YGFVHF +A +A++ ++ + + K + +++
Sbjct: 124 NILSCKVVCDENGSKG--YGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 228 SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPG 280
G+ +++ Y + G M L Y PA + M G + G
Sbjct: 182 ELGARARE--FTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKG 232
>gi|402889647|ref|XP_003908120.1| PREDICTED: nucleolin isoform 3 [Papio anubis]
Length = 634
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 350 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 409
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 410 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 466
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 467 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 524
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 525 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 574
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 443 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 502
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 503 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 557
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 558 --EIDGNKVTLDWAKPK 572
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 26/229 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 204 RKKEMAKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 259
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 260 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 307
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 308 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 362
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 241
+ A K + + EIDG+ + + +Q GG NS S + T
Sbjct: 363 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 411
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,995,291,999
Number of Sequences: 23463169
Number of extensions: 272179151
Number of successful extensions: 878774
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5612
Number of HSP's successfully gapped in prelim test: 10435
Number of HSP's that attempted gapping in prelim test: 826522
Number of HSP's gapped (non-prelim): 51174
length of query: 342
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 199
effective length of database: 9,003,962,200
effective search space: 1791788477800
effective search space used: 1791788477800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 77 (34.3 bits)