BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019327
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 109 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 169 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 228
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 229 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 280
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 339
Query: 243 ------PPHL 246
PPH+
Sbjct: 340 DYYYYGPPHM 349
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 131
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 132 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 179
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 180 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 238
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++
Sbjct: 199 TGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQ 258
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 259 ILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG 318
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 319 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKL 370
Query: 184 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY- 242
Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYD 429
Query: 243 ------PPHL 246
PPH+
Sbjct: 430 DYYYYGPPHM 439
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 168
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 169 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 224
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 202 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 261
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 262 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 321
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183
TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++
Sbjct: 322 TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKL 373
Query: 184 SRYGFVHFAERSSAMKAL 201
Y FVHF +R +A+KA+
Sbjct: 374 KDYAFVHFEDRGAAVKAM 391
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ K GP + + L+ DP + QNRG+AFI + A+ + +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-QNRGYAFITFCGKEAAQEAVK 224
Query: 111 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
+ + + + +S A+ R L+V ++PK+ T++ + E F+ +
Sbjct: 225 LCDSYEIRPGKHLGVCISVANNR------------LFVGSIPKNKTKENILEEFSKVTEG 272
Query: 170 TKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKP 221
VI +P ++ G F+ + + SA +A + + K ++ G V+ A P
Sbjct: 273 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + T+E A +AI+ L++ E++ GK I + RLFIG++P++ +++
Sbjct: 81 SGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEE 140
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 141 IQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTI 200
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + +V+ LYV+NL T++ L+ F+ G + +V +
Sbjct: 201 QVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------K 252
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
+ + Y F+HF R A+ AL++ IDG ++ +LAKP
Sbjct: 253 KLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 292
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + + +NRG+AF+ Y A+ + Q
Sbjct: 47 VFVGKIPRDMYEDELVPVFEQAG-HIYEFRLMM--EFSGENRGYAFVMYTTREKAQRAIQ 103
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE--LFAHHG 167
+ N + + VS + R L++ ++PKD ++ ++E + G
Sbjct: 104 LLDNYEIRPGKFIGVCVSLDNCR------------LFIGSIPKDKKKEEIQEEMMKVTEG 151
Query: 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKP--QA 223
+ +V P A + + FV + +A A + +++ G + A+P +
Sbjct: 152 VMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKEL 211
Query: 224 DQKT 227
D++T
Sbjct: 212 DEET 215
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K+ F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQ 234
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAE 339
Query: 235 KSALNPTY 242
A P+Y
Sbjct: 340 AVAQQPSY 347
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + + A +A++
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRG-YAFVMYCHKHEAKRAVREL 131
Query: 205 EKYEI 209
YEI
Sbjct: 132 NNYEI 136
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ +G + + L+ D +NRG+AF+ Y + A+ + +
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVG-RIYELRLMMDFD--GKNRGYAFVMYCHKHEAKRAVR 129
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGK 168
+++N + + D N L++ +PK + + E A G
Sbjct: 130 ELNNYEIRPGRLLGVCCSVD--NCR---------LFIGGIPKMKKRGEILEEIAKVTEGV 178
Query: 169 ITKVVIPPAKPGQERSRYGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
+ +V A + + FV + + R++AM K + ++ G + A+P+ D
Sbjct: 179 LNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 65
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 108 GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEI 167
Query: 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125
+ + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 168 LEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 227
Query: 126 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 182
V WA+P + + VK LYV+NL + T++ +K F G + +V ++
Sbjct: 228 VDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERV--------KK 279
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQ 234
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++
Sbjct: 280 IRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAE 339
Query: 235 KSALNPTY 242
A P+Y
Sbjct: 340 AVAQQPSY 347
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + + A +A++
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRG-YAFVMYCHKHEAKRAVREL 131
Query: 205 EKYEI 209
YEI
Sbjct: 132 NNYEI 136
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ +G + + L+ D +NRG+AF+ Y + A+ + +
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVG-RIYELRLMMDFD--GKNRGYAFVMYCHKHEAKRAVR 129
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGK 168
+++N + + D N L++ +PK + + E A G
Sbjct: 130 ELNNYEIRPGRLLGVCCSVD--NCR---------LFIGGIPKMKKRGEILEEIAKVTEGV 178
Query: 169 ITKVVIPPAKPGQERSRYGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
+ +V A + + FV + + R++AM K + ++ G + A+P+ D
Sbjct: 179 LNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 109 DGKNRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 168
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 169 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 228
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 229 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 280
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S
Sbjct: 281 KIRDYAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPVDKEQYS 327
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ +G + + L+ D +NRG+AF+ Y + A+ + +
Sbjct: 75 VFVGKIPRDVYEDELVPVFEAVG-RIYELRLMMDFD--GKNRGYAFVTYCHKGEAKRAVR 131
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGK 168
+++N + + D N L++ +PK ++ + E A G
Sbjct: 132 ELNNHEIRPGRLLGVCCSVD--NCR---------LFIGGIPKMKKREEILEEIAKVTEGV 180
Query: 169 ITKVVIPPAKPGQERSRYGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
+ +V A + + FV + + R++AM K + ++ G + A+P+ D
Sbjct: 181 LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 238
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F+ KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F GKI + + G+ R Y FV + + A A++
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRG-YAFVMYTTKEEAQLAIRIL 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + + +NRG+AF+ Y A+ + +
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAG-KIYEFRLMM--EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
++N + + VS + R L++ +PK + + +E+ K+
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCR------------LFIGAIPK---EKKKEEILDEMKKV 164
Query: 170 TK----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKP- 221
T+ V++ P+ + ++R + FV + + R++AM K +++ G + A P
Sbjct: 165 TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPE 224
Query: 222 -QADQKT 227
+ D++T
Sbjct: 225 KEVDEET 231
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + + A +A++
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRG-YAFVMYCHKHEAKRAVREL 131
Query: 205 EKYEI 209
YEI
Sbjct: 132 NNYEI 136
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ +G + + L+ D +NRG+AF+ Y + A+ + +
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVG-RIYELRLMMD--FDGKNRGYAFVMYCHKHEAKRAVR 129
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGK 168
+++N + + D N L++ +PK ++ + E A G
Sbjct: 130 ELNNYEIRPGRLLGVCCSVD--NCR---------LFIGGIPKMKKREEILEEIAKVTEGV 178
Query: 169 ITKVVIPPAKPGQERSRYGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
+ +V A + + FV + + R++AM K + ++ G + A+P+ D
Sbjct: 179 LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++
Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREE 166
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 167 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 226
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQ 181
V WA+P + + VK LYV+NL + T+D +K+ F G + +V +
Sbjct: 227 AVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------K 278
Query: 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228
+ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 279 KIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 325
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F G+I ++ + G+ R Y FV + + A +A++
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRG-YAFVMYCHKHEAKRAVREL 131
Query: 205 EKYEI 209
YEI
Sbjct: 132 NNYEI 136
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ +G + + L+ D +NRG+AF+ Y + A+ + +
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVG-RIYELRLMMD--FDGKNRGYAFVMYCHKHEAKRAVR 129
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGK 168
+++N + + D N L++ +PK ++ + E A G
Sbjct: 130 ELNNYEIRPGRLLGVCCSVD--NCR---------LFIGGIPKMKKREEILEEIAKVTEGV 178
Query: 169 ITKVVIPPAKPGQERSRYGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQAD 224
+ +V A + + FV + + R++AM K + ++ G + A+P+ D
Sbjct: 179 LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F GKI + + G+ R Y FV + + A A++
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRG-YAFVMYTTKEEAQLAIRIL 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + + +NRG+AF+ Y A+ + +
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAG-KIYEFRLMM--EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
++N + + VS + R L++ +PK + + +E+ K+
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCR------------LFIGAIPK---EKKKEEILDEMKKV 164
Query: 170 TK----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKP- 221
T+ V++ P+ + ++R + FV + + R++AM K +++ G + A P
Sbjct: 165 TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPE 224
Query: 222 -QADQKT 227
+ D++T
Sbjct: 225 KEVDEET 231
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ +++
Sbjct: 97 SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L +
Sbjct: 157 ILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WADP + + +VK LYV+NL T++ +K F KPG E
Sbjct: 217 QVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF-----------KPGAVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
R + Y FVHF R A+ A+ IDG ++ +LAKP + T
Sbjct: 266 RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D L +F GKI + + G+ R Y FV + + A A++
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRG-YAFVMYTTKEEAQLAIRIL 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+F+G +PR+ ED++ + G + L+ + + +NRG+AF+ Y A+ + +
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAG-KIYEFRLMM--EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 111 KMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169
++N + + VS + R L++ +PK + + +E+ K+
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCR------------LFIGAIPK---EKKKEEILDEMKKV 164
Query: 170 TK----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKP- 221
T+ V++ P+ + ++R + FV + + R++AM K +++ G + A P
Sbjct: 165 TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPE 224
Query: 222 -QADQKT 227
+ D++T
Sbjct: 225 KEVDEET 231
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKVEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMD-FNGN-NRGYAFVTFSNKLEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF-AERSSAMKALKNTE-KYEIDGQVLDCSLAKPQA 223
+ V++ P+ + ++R + FV + + R++AM K + ++ G + A+P+
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEV 220
Query: 224 D 224
+
Sbjct: 221 E 221
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
SGE +GYAFV + KE A AI LN+ E+ +GK I + RLFIG++P+ +++
Sbjct: 97 SGENRGYAFVMYTNKEEALLAIRMLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEE 156
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + + K+ GV+ + + + +NRGFAF+ Y +H A +R+K+ F+L +
Sbjct: 157 ILEEMKKVTEGVMDVIVYPSATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTI 216
Query: 125 TVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QE 182
V+WA P + + +VK LYV+NL T++ +K F + KPG E
Sbjct: 217 KVAWASPEKEVDEETMQKVKVLYVRNLMMSTTEETIKAEFNRY-----------KPGVVE 265
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF R A+ A+ IDG ++ +LAKP
Sbjct: 266 RVKKIRDYAFVHFFRRDYAIAAMSVMNGRLIDGARIEVTLAKP 308
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
++V +P+D+ +D+L LFA GKI + + G+ R Y FV + + A+ A++
Sbjct: 63 VFVGKIPRDMYEDKLVPLFARAGKIYEFRLMMEFSGENRG-YAFVMYTNKEEALLAIRML 121
Query: 205 EKYEI 209
YEI
Sbjct: 122 NNYEI 126
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + ++ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRMMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIR-----------NGRLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 64
+G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREE 151
Query: 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L +
Sbjct: 152 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPI 211
Query: 125 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 182
V WA+P + S VK LYV+NL +++ +++ F KPG E
Sbjct: 212 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVE 260
Query: 183 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 261 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+FIG +PR+ ED++ KIG + + L+ D N N NRG+AF+ + N A+ + +
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIG-KIYEMRLMMD-FNGN-NRGYAFVTFSNKQEAKNAIK 114
Query: 111 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 170
+++N + + R A+ L+V +PK T+ R +E+ + K+T
Sbjct: 115 QLNNYEIRTG-----------RLLGVCASVDNCRLFVGGIPK--TKKR-EEILSEMKKVT 160
Query: 171 K----VVIPPAKPGQERSR-YGFVHF 191
+ V++ P+ + ++R + FV +
Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY 186
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204
+++ LP+D+ +D L L GKI ++ + G R Y FV F+ + A A+K
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVTFSNKQEAKNAIKQL 116
Query: 205 EKYEI 209
YEI
Sbjct: 117 NNYEI 121
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 24/231 (10%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRN 59
GY +V F + A++AI+ELN L GK I+ + HR +FI N+ +
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDES 134
Query: 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119
+ + G ++S ++ D ++ Q++G+ F++Y N A+ + +K++ L
Sbjct: 135 IDHKALHDTFSSFG-NIVSCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLL 189
Query: 120 DDNAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 177
+D V R S A++ K +YVKNL + T D LK F +GKIT V+
Sbjct: 190 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--M 247
Query: 178 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
K G+ +S+ +GFV+F A +A+++ ++ D + A+ +++++T
Sbjct: 248 KDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 50/310 (16%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFI 53
SG++KGY FV + +E A +AIE+LN L K++ +A + K +++
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYV 219
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+ + +DD++ A + G + S ++KD + +++GF F+ + N A + + ++
Sbjct: 220 KNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGE--GKSKGFGFVNFENADDAARAVESLN 276
Query: 114 NPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQDRL 159
KF DD V A ++ E++ Q LYVKNL I+ ++L
Sbjct: 277 GHKF--DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 160 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219
KE+F+ G +T + G + GFV FA A +A+ I+ + L ++A
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
Query: 220 KPQADQKT---SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG 276
+ + D++ + S + A+ P+ P + GG G Q M YG+
Sbjct: 394 QRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG-----------PGIGQQMFYGQ- 441
Query: 277 AAPGGMAMLP 286
A P AM+P
Sbjct: 442 APP---AMIP 448
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA---AQAKHR-----------L 51
+G +KGY FV F +E A AI++LN + K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 52 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
++ N+P+ GED++RK K GVIS +V Q+ N +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQD 157
M+ L D+ V A ++ SQ LY+KNL + +
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 158 RLKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+LKE+F+ +G +T KV++ P Q SR +GFV ++ A++AL I + L
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP----QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 215 DCSLAKPQADQK 226
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA++ F A +A+E LN L + I+ + K +FI N+ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ ++D
Sbjct: 150 KALFETFSSFG-TILSCKVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDK 204
Query: 123 APTVSWADPRNA----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R E++ + +YVKNLPK+I +D L++ F G I+ V+ +
Sbjct: 205 QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G R +GFV+F +A A++ + VL A+ +++++
Sbjct: 265 SGNSRC-FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +AIE+LN +KGK + +Q L +I N+
Sbjct: 80 GYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDN 139
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D + RGF F+ + N + A + + + ++D
Sbjct: 140 KSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDARDAIEAVDG--MLMNDQ 194
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V+ + S +VKA +YVKN+ ++ +Q+ +ELF +GKIT V+
Sbjct: 195 EVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDS 254
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F + ++A KA+ + E GQ L
Sbjct: 255 EGKLRG-FGFVNFEDHAAAAKAVDELNELEFKGQKL 289
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEE-----LNSCEL--------KGKKIKCSAAQAKH-R 50
++G ++G+ FV F + A AIE +N E+ K ++ K +AK
Sbjct: 161 ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTN 220
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + +++ + K G + S L KD + + RGF F+ + +HA A +
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGK-ITSAVLEKDSEG--KLRGFGFVNFEDHAAAAKAVD 277
Query: 111 KMSNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++ +FK + + E A Q L+VKNL I ++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE FA G IT + + G R +GFV F+ A KA+ + + G+ L ++
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 219 AK 220
A+
Sbjct: 397 AQ 398
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 4 KDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
KDS G+ +G+ FV F A++A++ELN E KG+K+ AQ K+
Sbjct: 252 KDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAA 311
Query: 51 ------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFI 97
LF+ N+ + ++ +++ G + S ++++D +RGF F+
Sbjct: 312 RLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGT-ITSAKVMRD--ETGNSRGFGFV 367
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V F E AS+A+E LN ++ + I+ + K +FI N+ +
Sbjct: 100 GYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDN 159
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S ++ D +++G+ F+++ A+ + K++ L+D
Sbjct: 160 KALYETFSSFG-TILSCKVAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDK 214
Query: 123 APTVSW----ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V D +ES A +YVKNLPK+IT D LK+ F +G I+ V+ +
Sbjct: 215 QVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 274
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G RS +GFV+F +A A++ + VL A+ ++D++
Sbjct: 275 SGNSRS-FGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 321
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 52/311 (16%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 52
G +KGY FV F +E A AI++LN L K++ + A + ++
Sbjct: 183 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 242
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+P+ +D+++K K G IS +V Q+ N +R F F+ + + A + +KM
Sbjct: 243 VKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 113 SNPKFKLDDNAPTVSWADP---------RNAESSAASQVKA-----LYVKNLPKDITQDR 158
+ L ++ V A R E S+ + LY+KNL + ++
Sbjct: 300 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
LKE+F+ +G +T + G R +GFV ++ A+ A+K I + L +L
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 219 AKPQADQKTSGGSNSQK----SALNPTYPPHLGY------GMVGGAY-----GALGAGYV 263
A+ + +++ S + ++P P G+ G + G + G G G V
Sbjct: 417 AQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLV 476
Query: 264 PAGFAQPMVYG 274
P +QPM YG
Sbjct: 477 P---SQPMGYG 484
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 131/313 (41%), Gaps = 46/313 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G AKGY FV F + E A+ AIE +N L KK+ K A +A ++
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVY 264
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ E + + G + S+ LVKD QN ++ RGF F+ Y NH CA+ + ++
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDEL 321
Query: 113 SNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ ++K + + E Q L++KNL ++ +RLK
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220
F+ G IT I + G+ + +GFV + A KA+ + + G+ L +LA+
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 221 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP- 279
+ ++S L + + A G V G P++YG G P
Sbjct: 441 RK---------EVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPI 491
Query: 280 ------GGMAMLP 286
GM M+P
Sbjct: 492 PAAVNGRGMPMVP 504
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F E +A++ELN +KG+ + +Q L FI N+
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D +G+ F+ + + A + + ++ L+D
Sbjct: 182 KALHDTFSAFG-KILSCKVAVD--ELGNAKGYGFVHFDSVESANAAIEHVNG--MLLNDK 236
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R S +KA +Y+KNL +IT+ +LF G+IT + + K
Sbjct: 237 KVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VK 294
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
++ R +GFV++A A KA+ E G+ L
Sbjct: 295 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 49
+ G++KG+ FV + T E A++A+ E+N L GK + + AQ K
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 30/242 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
++G++KG+ +V F E AS+AI+ LN L G++I +K
Sbjct: 158 ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTN 217
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N+ + + + V K G S+ L + P+ +N+GF F+ + NH A +
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGK-TDSVVLERTPEG--ENKGFGFVNFVNHEDAVKCVE 274
Query: 111 KMSNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+++N +FK + + E A Q L++KNL I +
Sbjct: 275 ELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKK 334
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+E FA +G IT + + G+ + +GFV F+ A KA+ + + G+ L ++
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 219 AK 220
A+
Sbjct: 394 AQ 395
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 14/226 (6%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F + A AIE+LN +KGK + +Q L FI N+ +
Sbjct: 77 GYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDN 136
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD- 121
+ + G ++S ++ D +++GF ++ + A + ++ +
Sbjct: 137 KALYDTFSVFG-NILSSKVATD--ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEI 193
Query: 122 -NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 180
P +S + + + +Y+KN+ + T +EL A GK VV+ G
Sbjct: 194 YVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEG 253
Query: 181 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
+ + +GFV+F A+K ++ E GQ L + A+ + +++
Sbjct: 254 ENKG-FGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQ 298
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDN 111
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + + G ++S +++ D Q + +G+AF+ + N + A+ + ++M N K
Sbjct: 112 KTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCK 166
Query: 123 APTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179
+ + ++ E+ S AS+ +Y+KN D+ +RLK++F+ +GK V +
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS 226
Query: 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV F +A KA++ +I+GQ++ A+ + +++
Sbjct: 227 GKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--------------SAAQAKHR 50
D +KGYAFV F+ + A +AIEE+N LKG K+ S A
Sbjct: 132 DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN 191
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
++I N + ++ ++ +K G +S++++ D + +++GF F+ + +H A+ + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ K++ A + E Q LY+KNL I ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L+ F+ G I++V + + GQ + +G + F+ A KA+ E++G++L
Sbjct: 309 LRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKAMT-----EMNGRIL 357
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196
+A ++ +LYV +L D+T+D L F+ G + + I + + Y +V+F + +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 197 AMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG-----GSNSQKSALNPTYPPHL 246
A KAL I G+ + ++ A + SG N KS N T H
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHF 118
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------HRLFIGNVPRNWGE 62
GYA++ F+ A +A++ +N LKG+ I+ +Q +FI N+ +
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++ D + RGF F+ + H A+ + M+ L+D
Sbjct: 113 KALYDTFSTFG-NILSCKVACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDR 166
Query: 123 APTVSWADPR---NAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +YVKNLP D+ + L++LF+ GK+ V +
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G R +GFV+F + A KA+ + E+ G++L
Sbjct: 227 SGHSRC-FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------------- 50
D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN 192
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F+ + H A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 111 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 158
M+ + +L + +N Q+K LYVKNL I D+
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L++ F+ +G IT + G +GFV F+ A KA+ + + L +L
Sbjct: 310 LRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 219 AKPQADQK 226
A+ + ++K
Sbjct: 368 AQRKEERK 375
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G +KGY FV + T E A+QAI+ +N+ L KK+ K +A
Sbjct: 188 ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 247
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ +++ R K G V S L +D + ++RGF F+ + H CA + +
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYG-DVTSSSLARDSE--GKSRGFGFVNFTTHECAAKAVE 304
Query: 111 KMSNPKFKLDD----NAPTVSWADPRNAESSAASQVKA--------LYVKNLPKDITQDR 158
+++ +F+ D A + +S A++++ LY+KNL DI D+
Sbjct: 305 ELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDK 364
Query: 159 LKELFAHHGKITKVVI 174
L+++F+ +G IT +
Sbjct: 365 LRQMFSEYGPITSAKV 380
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + +A+EELN +KG+ + +Q + +FI N+
Sbjct: 107 GYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN 166
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D +N N ++G+ F+ Y A + + ++N L++
Sbjct: 167 KALHDTFAAFG-NILSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNN--MLLNEK 221
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + P+ S ++KA +YVKN+ + T + ++LFA +G +T +
Sbjct: 222 KVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS 281
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F A KA++ E GQ L
Sbjct: 282 EGKSRG-FGFVNFTTHECAAKAVEELNGKEFRGQDL 316
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 26/106 (24%)
Query: 4 KDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
+DS G+++G+ FV F T E A++A+EELN E +G+ + AQ KH
Sbjct: 279 RDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAA 338
Query: 51 ------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 339 RLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGP-ITSAKVMRD 383
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 105
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y + +
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRD-TITRRSLGYAYVNYNSTSDG 119
Query: 106 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 120 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 172
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 173 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPK 231
Query: 223 ADQKT 227
D+++
Sbjct: 232 KDRQS 236
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
G++KG+ FV F + A++A+ E+N ++GK + + AQ K
Sbjct: 431 GKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 18/221 (8%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 57
S ++ GYA+V + E +AIEELN ++G+ + +Q +FI N+
Sbjct: 104 SKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLH 163
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ + G ++S+++ D + Q++ F F+ Y A+ + + ++
Sbjct: 164 PAIDNKALHDTFSAFGK-ILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVNG--M 218
Query: 118 KLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVV 173
L+D V + S ++KA +YVKN+ T+ +ELFA GKIT +
Sbjct: 219 LLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIY 278
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G+ + +GFV+F E +A KA++ EI+GQ +
Sbjct: 279 LEKDAEGKSKG-FGFVNFEEHEAAAKAVEELNDKEINGQKI 318
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
D G++K + FV + T+E A AIE +N L +++ K +A +
Sbjct: 190 DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTN 249
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+++ N+ + E + + G + SI L KD + +++GF F+ + H A + +
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGK-ITSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVE 306
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
++++ + K + + E + Q L+VKNL + I ++
Sbjct: 307 ELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEK 366
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+E F G IT + G+ + +GFV F+ A KA+ + ++G+ L +L
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKG-FGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 219 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGR 275
A+ + + ++S L M A AG +P F PM YG+
Sbjct: 426 AQRK---------DVRRSQLEQQIQARNQMRMQNAA----AAGGLPGQFMPPMFYGQ 469
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + + E +A+EELN +KGK + +Q + +FI N+
Sbjct: 90 GYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L++
Sbjct: 150 KALHDTFAAFG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V P+ S ++KA +YVKN+ D+T + +ELF HG IT I A+
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--AR 262
Query: 179 PGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 214
Q +SR +GFV++ +A A+ + E GQ L
Sbjct: 263 DDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKL 299
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ K +A ++
Sbjct: 173 GNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIY 232
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ + ++D R+ K G + S + +D Q ++RGF F+ Y H A + +
Sbjct: 233 VKNIDLDVTDEDFRELFEKHG-DITSASIARDDQ--GKSRGFGFVNYIRHEAAAVAVDHL 289
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ +F K + + E + Q LY+KNL D+ ++L+
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 161 ELFAHHGKIT--KVVI 174
++F G IT KV++
Sbjct: 350 DMFTPFGTITSAKVIL 365
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 50
D G+++G+ FV + E A+ A++ LN E KG+K+ AQ KH
Sbjct: 264 DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHE 309
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
G++KG+ FV F + A++A+ E+N ++GK + + AQ K
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 43/289 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
+ G+++GY FV F ++ A AI+ LNS + K+I + + L++
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMK 206
Query: 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114
N+ + ED +R+ + G ++S+ + KD RG+AF+ + N A + + ++
Sbjct: 207 NLDADVSEDLLREKFAEFGK-IVSLAIAKDENRLC--RGYAFVNFDNPEDARRAAETVNG 263
Query: 115 PKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 162
KF K + ++ E ++V +YVKN+ +T++ L++
Sbjct: 264 TKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKH 323
Query: 163 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222
F+ G IT + + G+ + +GFV F+ A+ A+K G+ L ++A+ +
Sbjct: 324 FSQCGTITSTKLMCDEKGKSKG-FGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Query: 223 ADQK----------TSGGSNSQKSALNP-TYPPHLGY-----GMVGGAY 255
D+K +S +++NP TY P L Y GMV +Y
Sbjct: 383 EDRKMQLQVQFGNRVEARKSSSSASVNPGTYAP-LYYTNTHPGMVYQSY 430
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 16/234 (6%)
Query: 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----SAAQAKHR----LFI 53
K SG + Y + F +++ A+ AIE+ N+ L GK I+ A A+ +F+
Sbjct: 57 KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFV 116
Query: 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113
N+P + ++ K G ++S ++ ++RG+ F+++ A + Q ++
Sbjct: 117 KNLPESVTNAVLQDMFKKFG-NIVSCKVA--TLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
+ + D V + + LY+KNL D+++D L+E FA GKI +
Sbjct: 174 STI--VADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 174 IPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
I AK R Y FV+F A +A + + + L A+ +A+++
Sbjct: 232 I--AKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 176 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ + E++ RK + G + S L +DP+ ++RGF F+ Y H A+ + +M
Sbjct: 236 IKNIDPDVTEEEFRKIFEQFGE-ITSATLSRDPEG--KSRGFGFVNYSTHESAQAAVDEM 292
Query: 113 SNPKFKL------------DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
+ + K + + E ++ Q LYVKNL D+ ++L+
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 161 ELFAHHGKITKVVI 174
ELF +G IT +
Sbjct: 353 ELFGPYGTITSAKV 366
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 93 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDN 152
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 153 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 207
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KN+ D+T++ +++F G+IT +
Sbjct: 208 KVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDP 267
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+++ SA A+ E+ Q L
Sbjct: 268 EGKSRG-FGFVNYSTHESAQAAVDEMHDKEVKTQKL 302
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 425 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 30/239 (12%)
Query: 3 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------ 50
GKD G KG A+V F ++ A++A+EE E++G+ I K +
Sbjct: 356 GKD-GSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDS 414
Query: 51 --LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 108
L + N+ + ED +R+ K SI + PQN + +GFAFIE+ + A+ +
Sbjct: 415 KVLVVNNLSYSATEDSLREVFEK----ATSIRI---PQNQGRAKGFAFIEFSSAEDAKDA 467
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSA---ASQVKALYVKNLPKDITQDRLKELFAH 165
+N + ++ + + ++ + ++Q K L+V+ L +D T++ LKE F
Sbjct: 468 MDSCNNTE--IEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF-- 523
Query: 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
G + ++ G + +GFV F+ A A + E EIDG + AKP+ D
Sbjct: 524 DGSVNARIVTDRDTGASKG-FGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 37 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNANQNRGFA 95
KK K A +FIGN+ D+++ A+ + ++I+ ++ ++ F
Sbjct: 221 AKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIR----IGNSKKFG 276
Query: 96 FIEYYNHACAE----YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 151
++++ + E + +K+ + K++ +++ + AE+ + L+VKN+P
Sbjct: 277 YVDFSSEEEVEKALKLTGKKILGTEVKIE---KAMAFDKNKTAENKKERDSRTLFVKNIP 333
Query: 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211
T + L+E+F + I IP K G + +V F+ A KAL+ + EI+G
Sbjct: 334 YSTTVEELQEIFENAKDIR---IPTGKDGSNKG-IAYVEFSNEDEANKALEEKQGAEIEG 389
Query: 212 QVL 214
+ +
Sbjct: 390 RSI 392
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGYAFV F T+E A +AIE++N L +K+ + + AK + F
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 55 NVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GE DD +++ ++ G +S+++++DP +++GF F+ Y H A + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVE 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ A + E + Q LY+KNL I ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 159 LKELFAHHGKIT--KVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLD 215
L++ F+ G IT KV++ RS+ +GFV F+ A KA+ + + L
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG-----RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 216 CSLAKPQADQK 226
+LA+ + ++K
Sbjct: 365 VALAQRKEERK 375
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK I+ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+AF+ + A+ + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +++ + LKELF+ GK V +
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G+ + +GFV + + A KA++ EI G+++ A+ + +++
Sbjct: 227 NGKSKG-FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKELF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED +++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 173 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ + E++ R+ K G + S L +D + ++RGF F+ Y H A+ + +M
Sbjct: 233 IKNLDQEISEEEFRQMFEKFGE-ITSATLSRDQEG--KSRGFGFVNYSTHDSAQAAVDEM 289
Query: 113 SNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ + K + + E ++ Q LYVKNL DI ++L+
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 161 ELFAHHGKITKVVI 174
E+FA +G IT +
Sbjct: 350 EMFAPYGTITSAKV 363
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 90 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDN 149
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 150 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 204
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KNL ++I+++ +++F G+IT + +
Sbjct: 205 KVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ 264
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+++ SA A+ E+ GQ L
Sbjct: 265 EGKSRG-FGFVNYSTHDSAQAAVDEMNDKEVKGQKL 299
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 179 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ +D+ RK K G + S L +D + ++RGF F+ + H A+ + ++M
Sbjct: 239 IKNLDSEIDDDEFRKMFEKFGE-ITSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEM 295
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ + K + + E ++ Q LYVKNL DI ++L+
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 161 ELFAHHGKITKVVI 174
ELF +G IT +
Sbjct: 356 ELFGPYGTITSAKV 369
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 96 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDN 155
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 156 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 210
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KNL +I D +++F G+IT + +
Sbjct: 211 KVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ 270
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F+ SA A++ EI Q L
Sbjct: 271 EGKSRG-FGFVNFSTHESAQAAVEEMNDKEIRSQKL 305
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 473
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 28/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A AI+ +N L KK+ AK ++
Sbjct: 180 GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
+ N+ ++ E++ R K G + S L +D ++ ++RGF F+ + +H A + + +
Sbjct: 240 VKNIDQDTTEEEFRDLFEKFGE-ITSATLARDAESG-KSRGFGFVNFTSHDNAAAAVEAL 297
Query: 113 SNPKFK------------LDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
++ FK + + E ++ Q LY+KNL DI ++L+
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 161 ELFAHHGKITKVVI 174
ELF+ +G IT +
Sbjct: 358 ELFSSYGTITSAKV 371
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 19/217 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KG+ + +Q + +FI N+
Sbjct: 97 GYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDN 156
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A+ + + ++ L+D
Sbjct: 157 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVNG--MLLNDK 211
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PA 177
V + S ++KA +YVKN+ +D T++ ++LF G+IT + A
Sbjct: 212 KVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDA 271
Query: 178 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
+ G+ R +GFV+F +A A++ + GQ L
Sbjct: 272 ESGKSRG-FGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 50
+SG+++G+ FV F + + A+ A+E LN + KG+K+ AQ KH
Sbjct: 272 ESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHE 317
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIDKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLKE F +G V +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ R +GFV F A KA+ + +++G+ + A+ + +++T
Sbjct: 227 HGKSRG-FGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 126/299 (42%), Gaps = 44/299 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AI+++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED-DMRKAVTKIGP--GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111
+N+GED D + G +S++++ D + ++RGF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD--DHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 112 MSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA----------LYVKNLPKDITQD 157
M+ L+ A V A + + Q+K LYVKNL I +
Sbjct: 251 MNGK--DLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 308
Query: 158 RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217
RL++ F G IT + G +GFV F+ A KA+ + + L +
Sbjct: 309 RLRKEFTPFGSITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 218 LAKPQADQKTSGGSNS--QKSA--------LNPTYPPHLGYGMVGGAYGALGAGYVPAG 266
LA+ + +++ + +N Q+ A +NP PP Y M A Y P G
Sbjct: 367 LAQ-RKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPG 424
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E+LN +KGK + +Q + +FI N+
Sbjct: 91 GYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDN 150
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ +D ++G+ F+ Y A + + ++ L+D
Sbjct: 151 KALHDTFAAFG-NILSCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDK 205
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S ++KA +Y+KN+ +D+T++ +ELF G+IT + +
Sbjct: 206 KVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQ 265
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
G+ R +GFV+F+ SA A+ + EI Q L
Sbjct: 266 EGKSRG-FGFVNFSTHESAQAAVDEMNEKEIRTQKL 300
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------RLF 52
G +KGY FV + T E A+ AI+ +N L KK+ +K ++
Sbjct: 174 GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112
I N+ ++ E++ R+ K G + S L +D + ++RGF F+ + H A+ + +M
Sbjct: 234 IKNIDQDVTEEEFRELFEKFGE-ITSATLSRDQEG--KSRGFGFVNFSTHESAQAAVDEM 290
Query: 113 SNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 160
+ + K + + E ++ Q LYVKNL D+ ++L+
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 161 ELFAHHGKITKVVI 174
ELF +G IT +
Sbjct: 351 ELFGPYGTITSAKV 364
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
K G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 427 KGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 123 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182
AP V+ + A +++ +LYV L +T+ L ELF+ G++ + + +
Sbjct: 29 APEVTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRR 88
Query: 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
Y +V++ + +AL++ I G+ C + Q D
Sbjct: 89 SLGYAYVNYNNTADGERALEDLNYTLIKGK--PCRIMWSQRD 128
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 428 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 487
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 488 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 544
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 545 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 602
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 603 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 652
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 521 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 580
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 581 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 635
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 636 --EIDGNKVTLDWAKPK 650
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 282 RKKEMAKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 337
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 338 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 385
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 386 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 440
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNS 233
+ A K + + EIDG+ + + +Q GG NS
Sbjct: 441 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 481
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
+++G +KG+ FV F ++E A A E + E+ G K+ A+ K
Sbjct: 606 RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 426 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 485
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 542
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 543 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 600
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 601 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 650
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 519 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 578
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 579 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 633
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 634 --EIDGNKVTLDWAKPK 648
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 280 RKKEMAKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 335
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 336 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGNE--IKLEKPKG 383
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 384 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 438
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNS 233
+ A K + + EIDG+ + + +Q GG NS
Sbjct: 439 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 479
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
+++G +KG+ FV F ++E A A E + E+ G K+ A+ K
Sbjct: 604 RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDD 64
G++KG A++ F+T+ A + EE E+ G+ I + + +++ + G W +
Sbjct: 427 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 486
Query: 65 MRKAVTKIGPGVISIEL---------VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKM-S 113
++ + L +K PQN N +++G+AFIE+ A E +++ + S
Sbjct: 487 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEALNS 543
Query: 114 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173
K +++ A + PR + ++ + K L+VK L +D T++ LKE F G + +
Sbjct: 544 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVRARI 601
Query: 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224
+ + G + +GFV F A A + E EIDG + AKP+ +
Sbjct: 602 VTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 651
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----------SAAQAKHRLFIGN 55
+G++KGYAF+ F + E A +A+ N E++G+ I+ + +Q LF+
Sbjct: 520 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 579
Query: 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115
+ + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M +
Sbjct: 580 LSEDTTEETLKESFD----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG 634
Query: 116 KFKLDDNAPTVSWADPR 132
++D N T+ WA P+
Sbjct: 635 --EIDGNKVTLDWAKPK 649
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 18 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI----G 73
R KE+A Q + E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 281 RKKEMAKQKA----APEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 336
Query: 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133
V+ + + R F ++++ AE + + K+ N + P+
Sbjct: 337 LAVVDVRI-------GMTRKFGYVDF---ESAEDLEKALELTGLKVFGN--EIKLEKPKG 384
Query: 134 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 193
+S + L KNLP +TQD LKE+F +I V +K G+ + ++ F
Sbjct: 385 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKT 439
Query: 194 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNS 233
+ A K + + EIDG+ + + +Q GG NS
Sbjct: 440 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 480
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 48
+++G +KG+ FV F ++E A A E + E+ G K+ A+ K
Sbjct: 605 RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 124/299 (41%), Gaps = 42/299 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G+++G+AFV + T E A AI+ +N L KK+ K +A+
Sbjct: 169 ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTN 228
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA----- 105
++I NV + + V GP IS+ L +D + ++GF F+ Y NH A
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGP-TISVALSRDEKGV--SKGFGFVNYENHESARKAVD 285
Query: 106 EYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
E + ++++ K K + A + + E+ A S LYVKNL + DR
Sbjct: 286 ELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDR 345
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + G R +GFV ++ A KA+ I + L +L
Sbjct: 346 LRAEFEAFGTITSSKVMRDDSGVSRG-FGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 219 A-----KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPA-GFAQPM 271
A + QA + Q+ +P GY G GY P G+ QPM
Sbjct: 405 AQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGY------MGQPMYGYPPMPGYGQPM 457
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E LN +KG+ + +Q + +FI N+ ++
Sbjct: 88 GYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDN 147
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D ++RGFAF+ Y A+ + + ++ L+D
Sbjct: 148 KALHDTFAAFG-DILSCKVGTD--ENGKSRGFAFVHYSTGEAADAAIKAVNG--MLLNDK 202
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S +++A +Y+KN+ ++T ++L G V + +
Sbjct: 203 KVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE 262
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV++ SA KA+ + E++G+ L A+ +++++
Sbjct: 263 KGVSKG-FGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 309
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 124/299 (41%), Gaps = 42/299 (14%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-R 50
++G+++G+AFV + T E A AI+ +N L KK+ K +A+
Sbjct: 169 ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTN 228
Query: 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA----- 105
++I NV + + V GP IS+ L +D + ++GF F+ Y NH A
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGP-TISVALSRDEKGV--SKGFGFVNYENHESARKAVD 285
Query: 106 EYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
E + ++++ K K + A + + E+ A S LYVKNL + DR
Sbjct: 286 ELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDR 345
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218
L+ F G IT + G R +GFV ++ A KA+ I + L +L
Sbjct: 346 LRAEFEAFGTITSSKVMRDDSGVSRG-FGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 219 A-----KPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPA-GFAQPM 271
A + QA + Q+ +P GY G GY P G+ QPM
Sbjct: 405 AQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGY------MGQPMYGYPPMPGYGQPM 457
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGE 62
GYA+V + +A+E LN +KG+ + +Q + +FI N+ ++
Sbjct: 88 GYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDN 147
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ G ++S ++ D ++RGFAF+ Y A+ + + ++ L+D
Sbjct: 148 KALHDTFAAFG-DILSCKVGTD--ENGKSRGFAFVHYSTGEAADAAIKAVNG--MLLNDK 202
Query: 123 APTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V + S +++A +Y+KN+ ++T ++L G V + +
Sbjct: 203 KVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE 262
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226
G + +GFV++ SA KA+ + E++G+ L A+ +++++
Sbjct: 263 KGVSKG-FGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 309
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGE 62
GYA+V F+ A +A++ +N +KGK ++ +Q L FI N+ ++
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122
+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 113 KALYDTFSAFG-NILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 166
Query: 123 APTV---SWADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 178
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 167 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 179 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 227
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 227 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------KCSAAQAKHRLFIG 54
D +KGY FV F T+E A +AIE++N L +K+ + + A+ + F
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 55 NVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110
+N+GED ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 111 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 158
+M+ + K++ + + Q LYVKNL I +R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214
L++ F+ G IT + G +GFV F+ A KA+ E++G+++
Sbjct: 310 LRKEFSPFGTITSAKV--MMEGGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 358
>sp|P28659|CELF1_MOUSE CUGBP Elav-like family member 1 OS=Mus musculus GN=Celf1 PE=1 SV=2
Length = 486
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPI--QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRTMAQTAIK 166
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 8 EAKGYAFVTFRTKELASQAIEELNS----------CELKGKKIKCSAAQAKHRLFIGNVP 57
++KG FVTF T++ A +A L++ ++K + + A +LFIG +
Sbjct: 57 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMIS 116
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ E+D+R + G + +++ P +RG AF+ + A+ + + M +
Sbjct: 117 KKCTENDIRVMFSSFGQ-IEECRILRGPDGL--SRGCAFVTFTTRTMAQTAIKAMHQAQT 173
Query: 118 KLDDNAP-TVSWADPR 132
++P V +AD +
Sbjct: 174 MEGCSSPMVVKFADTQ 189
>sp|Q4QQT3|CELF1_RAT CUGBP Elav-like family member 1 OS=Rattus norvegicus GN=Celf1 PE=2
SV=1
Length = 487
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYS 108
++F+G VPR W E D+R+ + G V I +++D QN Q++G F+ +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 109 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168
+ + N K + P P ++E + A + + L++ + K T++ ++ +F+ G+
Sbjct: 76 QNALHNMKVLPGMHHPI--QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
Query: 169 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202
I + I G R FV F R+ A A+K
Sbjct: 134 IEECRILRGPDGLSRG-CAFVTFTTRTMAQTAIK 166
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 8 EAKGYAFVTFRTKELASQAIEELNS----------CELKGKKIKCSAAQAKHRLFIGNVP 57
++KG FVTF T++ A +A L++ ++K + + A +LFIG +
Sbjct: 57 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMIS 116
Query: 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117
+ E+D+R + G + +++ P +RG AF+ + A+ + + M +
Sbjct: 117 KKCTENDIRVMFSSFGQ-IEECRILRGPDGL--SRGCAFVTFTTRTMAQTAIKAMHQAQT 173
Query: 118 KLDDNAP-TVSWADPR 132
++P V +AD +
Sbjct: 174 MEGCSSPMVVKFADTQ 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,887,011
Number of Sequences: 539616
Number of extensions: 6440228
Number of successful extensions: 21623
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 390
Number of HSP's that attempted gapping in prelim test: 18481
Number of HSP's gapped (non-prelim): 2805
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)