Query 019327
Match_columns 342
No_of_seqs 318 out of 2700
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 3.1E-52 6.8E-57 364.0 32.7 281 1-290 116-406 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-42 4.3E-47 325.8 31.3 216 1-225 91-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.1E-42 1.8E-46 313.9 27.2 222 1-224 36-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-38 7E-43 306.4 33.7 215 5-225 124-367 (562)
5 KOG0145 RNA-binding protein EL 100.0 3.6E-38 7.8E-43 257.9 20.1 220 1-222 74-358 (360)
6 TIGR01659 sex-lethal sex-letha 100.0 4.1E-37 8.9E-42 276.6 26.2 172 46-225 105-278 (346)
7 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-37 3.4E-42 301.6 24.8 219 1-225 33-264 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.4E-33 7.4E-38 265.0 26.4 205 8-223 36-352 (481)
9 KOG0148 Apoptosis-promoting RN 100.0 1.2E-33 2.6E-38 232.8 20.2 170 49-228 63-244 (321)
10 KOG0144 RNA-binding protein CU 100.0 1.5E-34 3.2E-39 252.2 15.4 221 1-224 67-506 (510)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-33 3.2E-38 271.3 23.4 213 4-221 217-501 (509)
12 TIGR01622 SF-CC1 splicing fact 100.0 1.4E-32 3E-37 261.1 25.4 213 1-222 122-448 (457)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-32 3.6E-37 260.3 25.1 163 49-222 276-480 (481)
14 KOG0127 Nucleolar protein fibr 100.0 1E-32 2.2E-37 247.1 20.2 219 1-224 38-380 (678)
15 TIGR01645 half-pint poly-U bin 100.0 7.3E-32 1.6E-36 254.7 22.0 175 47-225 106-287 (612)
16 TIGR01645 half-pint poly-U bin 100.0 8.7E-31 1.9E-35 247.5 24.2 127 1-131 140-283 (612)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.6E-31 1.4E-35 241.5 20.6 169 47-223 2-172 (352)
18 KOG0123 Polyadenylate-binding 100.0 8.6E-30 1.9E-34 230.4 20.0 208 9-224 36-248 (369)
19 KOG0144 RNA-binding protein CU 100.0 2.5E-30 5.4E-35 225.9 13.8 175 49-229 35-213 (510)
20 KOG0117 Heterogeneous nuclear 100.0 1.1E-27 2.5E-32 210.3 29.4 194 16-227 40-253 (506)
21 TIGR01648 hnRNP-R-Q heterogene 100.0 6.9E-29 1.5E-33 234.4 21.7 192 19-224 18-224 (578)
22 TIGR01622 SF-CC1 splicing fact 100.0 6E-29 1.3E-33 236.2 21.4 172 46-222 87-266 (457)
23 KOG0145 RNA-binding protein EL 100.0 9E-30 1.9E-34 208.8 13.2 173 45-225 38-212 (360)
24 KOG0131 Splicing factor 3b, su 100.0 6.9E-28 1.5E-32 187.9 11.8 176 44-226 5-181 (203)
25 KOG0123 Polyadenylate-binding 99.9 1.3E-26 2.8E-31 209.8 16.4 211 9-226 115-353 (369)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.9E-26 8.4E-31 219.9 20.4 168 46-223 173-376 (509)
27 TIGR01659 sex-lethal sex-letha 99.9 1.1E-26 2.5E-31 209.1 15.5 130 1-132 140-275 (346)
28 KOG4205 RNA-binding protein mu 99.9 1.2E-25 2.7E-30 196.3 20.8 177 47-229 5-183 (311)
29 KOG0109 RNA-binding protein LA 99.9 1.1E-26 2.3E-31 193.7 10.3 155 49-229 3-157 (346)
30 KOG0127 Nucleolar protein fibr 99.9 1.9E-25 4.1E-30 200.7 16.6 171 49-224 6-198 (678)
31 KOG0146 RNA-binding protein ET 99.9 9.5E-26 2.1E-30 185.9 10.0 186 38-226 3-369 (371)
32 KOG0124 Polypyrimidine tract-b 99.9 1.7E-24 3.6E-29 185.8 17.7 214 3-220 148-533 (544)
33 KOG0124 Polypyrimidine tract-b 99.9 5.5E-25 1.2E-29 188.7 12.1 172 49-224 114-292 (544)
34 KOG0147 Transcriptional coacti 99.9 1E-24 2.2E-29 196.8 13.0 210 1-220 212-526 (549)
35 KOG0110 RNA-binding protein (R 99.9 1.6E-24 3.5E-29 200.6 13.8 210 12-224 423-695 (725)
36 KOG0148 Apoptosis-promoting RN 99.9 1.4E-24 3E-29 179.4 11.8 123 1-133 95-239 (321)
37 KOG4212 RNA-binding protein hn 99.9 1.9E-20 4E-25 164.5 20.1 109 4-115 80-279 (608)
38 KOG0105 Alternative splicing f 99.9 3.5E-20 7.5E-25 145.1 15.7 152 46-211 4-177 (241)
39 KOG0147 Transcriptional coacti 99.9 6.9E-22 1.5E-26 178.7 7.0 175 47-226 178-362 (549)
40 KOG4211 Splicing factor hnRNP- 99.8 2.4E-19 5.1E-24 160.3 21.5 167 49-225 11-185 (510)
41 KOG4211 Splicing factor hnRNP- 99.8 6E-19 1.3E-23 157.7 21.9 208 2-219 41-355 (510)
42 KOG0131 Splicing factor 3b, su 99.8 4.3E-20 9.3E-25 144.4 8.8 130 2-134 43-179 (203)
43 PLN03134 glycine-rich RNA-bind 99.8 6.2E-19 1.3E-23 139.5 14.7 86 139-224 31-116 (144)
44 KOG4206 Spliceosomal protein s 99.8 2.5E-18 5.5E-23 139.9 16.8 164 45-220 6-220 (221)
45 KOG0120 Splicing factor U2AF, 99.8 2.4E-18 5.2E-23 157.8 13.7 212 5-221 218-491 (500)
46 KOG0110 RNA-binding protein (R 99.8 4.9E-18 1.1E-22 158.0 13.7 162 49-220 386-596 (725)
47 KOG4212 RNA-binding protein hn 99.8 1.8E-17 3.8E-22 145.9 16.4 171 47-223 43-295 (608)
48 KOG1190 Polypyrimidine tract-b 99.7 1.3E-16 2.7E-21 139.6 17.2 198 11-221 189-490 (492)
49 PLN03134 glycine-rich RNA-bind 99.7 2.4E-17 5.3E-22 130.4 10.1 85 45-133 31-115 (144)
50 KOG0106 Alternative splicing f 99.7 2.8E-17 6.1E-22 135.3 6.6 151 49-219 2-168 (216)
51 KOG1457 RNA binding protein (c 99.7 4.5E-16 9.8E-21 125.7 12.2 158 47-209 33-273 (284)
52 KOG1190 Polypyrimidine tract-b 99.7 6.3E-16 1.4E-20 135.2 14.0 211 7-228 61-379 (492)
53 KOG1548 Transcription elongati 99.7 1.5E-15 3.2E-20 130.5 16.0 168 47-223 133-353 (382)
54 KOG1456 Heterogeneous nuclear 99.7 7.1E-15 1.5E-19 127.3 20.2 200 11-221 160-490 (494)
55 KOG1365 RNA-binding protein Fu 99.7 9.3E-17 2E-21 139.2 8.7 216 1-223 93-363 (508)
56 KOG0109 RNA-binding protein LA 99.7 7.3E-17 1.6E-21 135.2 7.7 115 9-135 35-153 (346)
57 KOG4205 RNA-binding protein mu 99.6 1.2E-16 2.5E-21 140.1 5.4 163 1-169 39-214 (311)
58 KOG0149 Predicted RNA-binding 99.6 4E-16 8.7E-21 127.4 7.8 79 48-131 12-90 (247)
59 KOG0149 Predicted RNA-binding 99.6 1.6E-15 3.5E-20 123.9 9.4 82 139-221 9-90 (247)
60 KOG0122 Translation initiation 99.6 1.4E-15 3E-20 124.7 9.0 83 140-222 187-269 (270)
61 PF00076 RRM_1: RNA recognitio 99.6 2.6E-15 5.6E-20 104.2 8.1 70 145-215 1-70 (70)
62 KOG1456 Heterogeneous nuclear 99.6 1.7E-13 3.6E-18 118.9 20.3 167 47-226 30-203 (494)
63 KOG0122 Translation initiation 99.6 4.7E-15 1E-19 121.6 8.3 82 47-132 188-269 (270)
64 KOG0146 RNA-binding protein ET 99.6 9.4E-15 2E-19 121.2 9.7 82 49-134 286-367 (371)
65 KOG0121 Nuclear cap-binding pr 99.6 8.5E-15 1.8E-19 108.2 8.0 86 139-224 33-118 (153)
66 KOG0121 Nuclear cap-binding pr 99.6 1.3E-14 2.8E-19 107.2 8.6 83 46-132 34-116 (153)
67 KOG0125 Ataxin 2-binding prote 99.6 1.2E-14 2.6E-19 124.0 9.5 88 138-227 92-179 (376)
68 PF00076 RRM_1: RNA recognitio 99.6 8E-15 1.7E-19 101.7 6.8 69 51-124 1-69 (70)
69 KOG0105 Alternative splicing f 99.6 2.5E-14 5.4E-19 112.4 10.1 77 141-220 5-81 (241)
70 COG0724 RNA-binding proteins ( 99.5 8.4E-14 1.8E-18 123.4 13.7 151 48-202 115-285 (306)
71 KOG4207 Predicted splicing fac 99.5 1.1E-14 2.3E-19 116.5 6.7 81 141-221 12-92 (256)
72 PF14259 RRM_6: RNA recognitio 99.5 3.6E-14 7.7E-19 98.5 8.2 70 145-215 1-70 (70)
73 KOG0113 U1 small nuclear ribon 99.5 4.1E-14 9E-19 119.3 9.7 87 137-223 96-182 (335)
74 PLN03120 nucleic acid binding 99.5 5.4E-14 1.2E-18 119.1 10.5 77 142-222 4-80 (260)
75 KOG0126 Predicted RNA-binding 99.5 3.1E-15 6.7E-20 117.2 1.8 105 108-220 9-113 (219)
76 KOG0107 Alternative splicing f 99.5 5.3E-14 1.2E-18 109.8 8.1 78 142-224 10-87 (195)
77 KOG0111 Cyclophilin-type pepti 99.5 2.2E-14 4.8E-19 115.7 5.3 87 141-227 9-95 (298)
78 KOG0107 Alternative splicing f 99.5 5.7E-14 1.2E-18 109.7 7.3 79 47-134 9-87 (195)
79 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.5E-18 118.0 8.2 83 47-135 95-177 (376)
80 KOG0114 Predicted RNA-binding 99.5 4.5E-13 9.9E-18 95.3 9.8 81 140-223 16-96 (124)
81 PLN03120 nucleic acid binding 99.5 2.7E-13 5.9E-18 114.8 10.1 78 48-133 4-81 (260)
82 KOG0130 RNA-binding protein RB 99.4 2.6E-13 5.6E-18 101.2 7.3 87 138-224 68-154 (170)
83 PF14259 RRM_6: RNA recognitio 99.4 1.6E-13 3.4E-18 95.3 5.8 69 51-124 1-69 (70)
84 smart00362 RRM_2 RNA recogniti 99.4 9.3E-13 2E-17 91.3 9.4 72 144-217 1-72 (72)
85 PLN03213 repressor of silencin 99.4 6.3E-13 1.4E-17 119.3 9.8 79 140-222 8-88 (759)
86 KOG0113 U1 small nuclear ribon 99.4 4.7E-13 1E-17 113.0 8.4 83 46-132 99-181 (335)
87 PLN03121 nucleic acid binding 99.4 1.4E-12 3.1E-17 108.6 10.6 78 141-222 4-81 (243)
88 smart00360 RRM RNA recognition 99.4 1.3E-12 2.8E-17 90.2 8.4 71 147-217 1-71 (71)
89 KOG0129 Predicted RNA-binding 99.4 7.5E-12 1.6E-16 113.5 13.6 153 49-203 260-432 (520)
90 KOG0111 Cyclophilin-type pepti 99.4 3.9E-13 8.5E-18 108.6 4.4 88 44-135 6-93 (298)
91 cd00590 RRM RRM (RNA recogniti 99.4 6.5E-12 1.4E-16 87.4 9.7 74 144-218 1-74 (74)
92 KOG0132 RNA polymerase II C-te 99.4 3.7E-11 8E-16 113.5 17.5 108 47-164 420-528 (894)
93 KOG0126 Predicted RNA-binding 99.4 8.9E-14 1.9E-18 109.1 -0.4 102 25-130 8-113 (219)
94 PLN03213 repressor of silencin 99.3 2.6E-12 5.7E-17 115.3 8.5 77 48-132 10-88 (759)
95 PLN03121 nucleic acid binding 99.3 4.7E-12 1E-16 105.6 9.2 75 48-130 5-79 (243)
96 smart00362 RRM_2 RNA recogniti 99.3 6.2E-12 1.3E-16 87.0 8.3 71 50-126 1-71 (72)
97 KOG4207 Predicted splicing fac 99.3 1.9E-12 4.2E-17 103.7 6.2 81 48-132 13-93 (256)
98 KOG0114 Predicted RNA-binding 99.3 6.4E-12 1.4E-16 89.5 8.0 80 47-133 17-96 (124)
99 PF13893 RRM_5: RNA recognitio 99.3 9.5E-12 2.1E-16 82.1 8.3 56 159-219 1-56 (56)
100 KOG1457 RNA binding protein (c 99.3 1.3E-11 2.7E-16 100.2 10.0 100 10-115 77-271 (284)
101 smart00360 RRM RNA recognition 99.3 1.1E-11 2.3E-16 85.5 8.4 70 53-126 1-70 (71)
102 KOG0120 Splicing factor U2AF, 99.3 6.4E-12 1.4E-16 115.9 8.8 168 47-224 174-371 (500)
103 KOG0130 RNA-binding protein RB 99.3 3.8E-12 8.2E-17 95.1 5.9 81 50-134 74-154 (170)
104 KOG0108 mRNA cleavage and poly 99.3 5.7E-12 1.2E-16 115.6 8.3 82 143-224 19-100 (435)
105 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.3E-16 85.0 7.7 62 156-217 2-70 (70)
106 COG0724 RNA-binding proteins ( 99.3 1.9E-11 4E-16 108.3 10.3 80 142-221 115-194 (306)
107 cd00590 RRM RRM (RNA recogniti 99.3 5.2E-11 1.1E-15 82.8 9.2 74 50-128 1-74 (74)
108 KOG4206 Spliceosomal protein s 99.2 8.6E-11 1.9E-15 96.2 10.7 118 4-129 46-219 (221)
109 KOG0108 mRNA cleavage and poly 99.2 2.3E-11 4.9E-16 111.7 8.1 82 49-134 19-100 (435)
110 KOG4454 RNA binding protein (R 99.2 6.1E-12 1.3E-16 101.8 2.1 143 45-207 6-148 (267)
111 KOG0415 Predicted peptidyl pro 99.2 3.8E-11 8.3E-16 103.7 6.3 85 140-224 237-321 (479)
112 KOG0415 Predicted peptidyl pro 99.2 4.4E-11 9.5E-16 103.4 6.4 93 37-133 228-320 (479)
113 KOG0128 RNA-binding protein SA 99.2 2.7E-12 5.9E-17 122.3 -1.5 188 12-226 616-819 (881)
114 KOG4307 RNA binding protein RB 99.2 2.3E-10 5.1E-15 106.8 10.7 77 142-218 867-943 (944)
115 smart00361 RRM_1 RNA recogniti 99.1 2E-10 4.3E-15 79.4 7.2 61 62-126 2-69 (70)
116 KOG0226 RNA-binding proteins [ 99.1 7.7E-11 1.7E-15 97.6 5.0 168 50-222 98-270 (290)
117 KOG0116 RasGAP SH3 binding pro 99.1 6.4E-10 1.4E-14 101.6 11.5 82 143-225 289-370 (419)
118 KOG0153 Predicted RNA-binding 99.1 2.6E-10 5.6E-15 98.6 8.1 79 137-221 223-302 (377)
119 KOG0132 RNA polymerase II C-te 99.1 5E-09 1.1E-13 99.4 17.3 79 142-226 421-499 (894)
120 KOG4210 Nuclear localization s 99.1 1.4E-10 3E-15 101.9 6.4 173 47-224 87-266 (285)
121 KOG0112 Large RNA-binding prot 99.1 8.5E-11 1.8E-15 112.8 5.4 163 45-224 369-533 (975)
122 PF13893 RRM_5: RNA recognitio 99.0 3.3E-10 7.2E-15 74.6 4.8 56 65-129 1-56 (56)
123 KOG0226 RNA-binding proteins [ 99.0 4.8E-10 1E-14 93.0 6.6 122 4-129 134-267 (290)
124 KOG0106 Alternative splicing f 99.0 1.5E-10 3.3E-15 95.7 3.5 109 8-128 33-167 (216)
125 KOG0153 Predicted RNA-binding 99.0 5.2E-10 1.1E-14 96.7 6.8 75 48-131 228-302 (377)
126 KOG4208 Nucleolar RNA-binding 98.9 3.7E-09 8E-14 85.3 8.1 84 139-222 46-130 (214)
127 KOG4208 Nucleolar RNA-binding 98.9 3.6E-09 7.9E-14 85.4 7.0 83 47-132 48-130 (214)
128 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.7E-09 7.9E-14 96.9 7.0 80 142-221 405-484 (940)
129 KOG1365 RNA-binding protein Fu 98.8 1.3E-08 2.8E-13 89.2 8.6 169 43-218 55-239 (508)
130 KOG2193 IGF-II mRNA-binding pr 98.8 5.5E-10 1.2E-14 98.8 -0.5 155 49-222 2-157 (584)
131 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.7E-13 93.5 7.6 81 48-132 405-485 (940)
132 KOG1548 Transcription elongati 98.8 1.1E-07 2.4E-12 82.6 11.5 120 5-132 178-352 (382)
133 KOG0533 RRM motif-containing p 98.7 4.3E-08 9.2E-13 83.1 8.7 83 142-225 83-165 (243)
134 KOG4660 Protein Mei2, essentia 98.7 1.7E-08 3.6E-13 92.8 5.7 159 46-221 73-249 (549)
135 KOG0533 RRM motif-containing p 98.7 6.4E-08 1.4E-12 82.1 8.3 81 47-132 82-162 (243)
136 KOG1995 Conserved Zn-finger pr 98.6 1.6E-07 3.6E-12 82.2 8.1 87 139-225 63-157 (351)
137 KOG4454 RNA binding protein (R 98.6 2.8E-08 6.1E-13 80.8 2.5 77 142-220 9-85 (267)
138 KOG4209 Splicing factor RNPS1, 98.5 1.2E-07 2.5E-12 80.7 5.8 85 137-222 96-180 (231)
139 KOG4660 Protein Mei2, essentia 98.5 8.4E-08 1.8E-12 88.3 4.3 74 137-215 70-143 (549)
140 PF04059 RRM_2: RNA recognitio 98.5 9E-07 2E-11 64.3 8.6 80 143-222 2-87 (97)
141 KOG0116 RasGAP SH3 binding pro 98.5 2.1E-07 4.7E-12 85.3 6.4 78 49-131 289-366 (419)
142 PF11608 Limkain-b1: Limkain b 98.5 1.5E-06 3.3E-11 60.1 8.4 70 143-222 3-77 (90)
143 PF04059 RRM_2: RNA recognitio 98.5 1.7E-06 3.6E-11 62.9 9.1 82 48-131 1-86 (97)
144 KOG4210 Nuclear localization s 98.5 2.8E-07 6E-12 81.1 5.8 127 3-134 123-266 (285)
145 KOG4849 mRNA cleavage factor I 98.4 3.3E-06 7.2E-11 73.5 11.3 77 141-217 79-157 (498)
146 KOG4307 RNA binding protein RB 98.4 4.8E-07 1.1E-11 85.2 6.1 164 49-219 312-511 (944)
147 KOG4209 Splicing factor RNPS1, 98.4 4.8E-07 1E-11 77.0 5.2 81 45-130 98-178 (231)
148 KOG1855 Predicted RNA-binding 98.3 1.7E-05 3.6E-10 71.2 14.2 91 117-207 206-309 (484)
149 KOG0151 Predicted splicing reg 98.3 9.4E-07 2E-11 83.5 6.8 86 138-223 170-258 (877)
150 KOG0128 RNA-binding protein SA 98.3 4.1E-07 8.9E-12 87.7 2.7 112 4-131 703-814 (881)
151 KOG4676 Splicing factor, argin 98.2 4.2E-07 9.2E-12 80.1 1.2 156 49-212 8-216 (479)
152 PF08777 RRM_3: RNA binding mo 98.2 3.9E-06 8.5E-11 62.4 6.1 70 143-218 2-76 (105)
153 KOG0151 Predicted splicing reg 98.1 3.4E-06 7.4E-11 79.8 5.4 81 49-132 175-257 (877)
154 KOG0129 Predicted RNA-binding 98.1 3.6E-05 7.8E-10 70.8 11.5 99 11-111 307-432 (520)
155 KOG0115 RNA-binding protein p5 98.0 2.5E-05 5.5E-10 65.5 7.5 104 20-127 4-109 (275)
156 COG5175 MOT2 Transcriptional r 97.9 5E-05 1.1E-09 66.0 8.6 82 141-222 113-203 (480)
157 PF08777 RRM_3: RNA binding mo 97.9 1.8E-05 3.9E-10 58.9 5.1 58 50-115 3-60 (105)
158 PF11608 Limkain-b1: Limkain b 97.9 0.00011 2.4E-09 51.0 8.0 71 49-132 3-77 (90)
159 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.3E-05 9.3E-10 49.2 5.6 52 143-201 2-53 (53)
160 KOG4849 mRNA cleavage factor I 97.9 1.5E-05 3.3E-10 69.5 4.0 74 50-126 82-156 (498)
161 KOG1995 Conserved Zn-finger pr 97.8 3.4E-05 7.4E-10 67.9 5.1 83 47-133 65-155 (351)
162 COG5175 MOT2 Transcriptional r 97.7 7.6E-05 1.7E-09 64.9 6.6 113 47-162 113-240 (480)
163 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00025 5.4E-09 52.0 7.7 77 142-220 6-90 (100)
164 KOG0112 Large RNA-binding prot 97.6 5E-05 1.1E-09 74.1 4.4 123 4-134 407-533 (975)
165 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 4E-09 46.2 5.2 52 49-109 2-53 (53)
166 KOG2202 U2 snRNP splicing fact 97.5 4E-05 8.7E-10 64.5 1.8 72 157-229 83-155 (260)
167 KOG2314 Translation initiation 97.5 0.00042 9.1E-09 64.5 8.3 77 142-219 58-141 (698)
168 KOG0921 Dosage compensation co 97.3 0.0074 1.6E-07 59.9 13.9 13 189-201 1086-1098(1282)
169 KOG0115 RNA-binding protein p5 97.2 0.00096 2.1E-08 56.2 6.2 103 103-219 5-111 (275)
170 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.5E-08 56.7 6.5 65 156-220 300-365 (378)
171 PF08952 DUF1866: Domain of un 97.2 0.0021 4.5E-08 50.1 7.4 57 157-222 51-107 (146)
172 KOG3152 TBP-binding protein, a 97.1 0.00048 1E-08 57.9 3.7 73 141-213 73-157 (278)
173 PF10309 DUF2414: Protein of u 97.0 0.0034 7.4E-08 41.4 6.5 55 142-204 5-62 (62)
174 KOG2591 c-Mpl binding protein, 97.0 0.0015 3.4E-08 60.7 6.1 94 24-126 151-246 (684)
175 KOG2193 IGF-II mRNA-binding pr 97.0 7.1E-05 1.5E-09 67.0 -2.6 112 10-128 37-153 (584)
176 KOG2314 Translation initiation 96.9 0.002 4.3E-08 60.2 6.1 67 47-116 57-129 (698)
177 KOG1855 Predicted RNA-binding 96.9 0.0012 2.5E-08 59.7 4.3 67 47-114 230-308 (484)
178 KOG4676 Splicing factor, argin 96.8 0.002 4.4E-08 57.4 5.2 76 143-219 8-86 (479)
179 KOG3152 TBP-binding protein, a 96.7 0.0015 3.2E-08 55.1 3.4 71 49-123 75-157 (278)
180 PF10309 DUF2414: Protein of u 96.7 0.014 3E-07 38.5 7.1 56 48-112 5-62 (62)
181 KOG2416 Acinus (induces apopto 96.6 0.0031 6.6E-08 59.3 4.8 80 138-223 440-523 (718)
182 KOG2202 U2 snRNP splicing fact 96.6 0.0016 3.4E-08 55.1 2.5 62 64-130 84-146 (260)
183 KOG3973 Uncharacterized conser 96.5 0.034 7.5E-07 49.0 10.5 11 264-274 381-391 (465)
184 KOG3973 Uncharacterized conser 96.4 0.034 7.3E-07 49.1 9.8 7 334-340 455-461 (465)
185 PF07576 BRAP2: BRCA1-associat 96.2 0.048 1E-06 40.8 8.6 64 51-117 16-79 (110)
186 PF08675 RNA_bind: RNA binding 96.2 0.012 2.6E-07 41.0 4.8 56 48-114 9-64 (87)
187 PF10567 Nab6_mRNP_bdg: RNA-re 96.1 0.16 3.4E-06 44.1 12.3 159 48-207 15-214 (309)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.02 4.4E-07 46.9 6.6 80 142-221 7-97 (176)
189 KOG2591 c-Mpl binding protein, 96.0 0.021 4.5E-07 53.5 6.9 85 117-218 160-248 (684)
190 PF08675 RNA_bind: RNA binding 95.9 0.049 1.1E-06 38.0 6.5 55 143-206 10-64 (87)
191 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.029 6.2E-07 41.2 5.1 79 46-129 4-89 (100)
192 KOG1996 mRNA splicing factor [ 95.6 0.041 8.8E-07 47.5 6.7 66 62-130 300-365 (378)
193 PF07292 NID: Nmi/IFP 35 domai 95.6 0.0068 1.5E-07 43.1 1.7 68 95-163 1-73 (88)
194 PF15023 DUF4523: Protein of u 95.6 0.045 9.8E-07 42.2 6.1 75 139-221 83-161 (166)
195 PF04847 Calcipressin: Calcipr 95.4 0.066 1.4E-06 44.1 7.1 63 155-223 8-72 (184)
196 PF07292 NID: Nmi/IFP 35 domai 95.3 0.085 1.9E-06 37.6 6.5 57 13-69 1-73 (88)
197 KOG2068 MOT2 transcription fac 95.3 0.0078 1.7E-07 53.0 1.4 81 143-223 78-164 (327)
198 KOG2068 MOT2 transcription fac 95.3 0.014 3.1E-07 51.4 2.8 111 48-161 77-199 (327)
199 KOG4285 Mitotic phosphoprotein 95.0 0.17 3.8E-06 44.0 8.5 74 142-223 197-271 (350)
200 KOG2416 Acinus (induces apopto 95.0 0.018 4E-07 54.3 2.8 62 47-115 443-504 (718)
201 PF15023 DUF4523: Protein of u 94.7 0.1 2.2E-06 40.3 5.7 71 49-131 87-161 (166)
202 PF07576 BRAP2: BRCA1-associat 94.6 0.44 9.6E-06 35.6 8.9 67 143-211 14-81 (110)
203 KOG1924 RhoA GTPase effector D 94.1 0.42 9.1E-06 47.1 9.7 18 16-33 205-222 (1102)
204 KOG2135 Proteins containing th 94.0 0.036 7.8E-07 51.0 2.4 72 145-223 375-447 (526)
205 KOG0804 Cytoplasmic Zn-finger 94.0 0.23 5.1E-06 45.6 7.4 69 47-118 73-141 (493)
206 KOG2318 Uncharacterized conser 93.7 0.33 7.1E-06 46.1 8.1 126 46-219 172-305 (650)
207 PF03880 DbpA: DbpA RNA bindin 93.6 0.33 7.2E-06 33.5 6.2 60 151-219 10-74 (74)
208 PF03467 Smg4_UPF3: Smg-4/UPF3 92.7 0.1 2.2E-06 42.7 2.9 71 46-116 5-79 (176)
209 KOG4574 RNA-binding protein (c 92.3 0.11 2.3E-06 51.4 3.0 76 50-133 300-375 (1007)
210 PF08952 DUF1866: Domain of un 92.3 0.2 4.2E-06 39.2 3.8 56 64-132 52-107 (146)
211 KOG4574 RNA-binding protein (c 91.9 0.13 2.7E-06 50.9 2.9 77 144-226 300-378 (1007)
212 KOG0804 Cytoplasmic Zn-finger 91.1 0.79 1.7E-05 42.3 6.8 68 142-211 74-142 (493)
213 PRK11634 ATP-dependent RNA hel 91.0 3.6 7.9E-05 41.0 12.1 61 151-220 496-561 (629)
214 KOG2135 Proteins containing th 90.5 0.12 2.5E-06 47.8 1.1 77 46-133 370-447 (526)
215 PF11767 SET_assoc: Histone ly 90.3 0.47 1E-05 31.9 3.6 29 14-42 37-65 (66)
216 PF04847 Calcipressin: Calcipr 89.6 0.62 1.3E-05 38.4 4.6 65 61-133 8-72 (184)
217 KOG2253 U1 snRNP complex, subu 89.5 0.38 8.3E-06 46.4 3.7 74 137-219 35-108 (668)
218 PF03880 DbpA: DbpA RNA bindin 88.9 2 4.3E-05 29.6 6.1 60 58-129 11-74 (74)
219 PF14111 DUF4283: Domain of un 86.5 1.8 3.8E-05 34.3 5.4 109 59-177 28-140 (153)
220 PF05918 API5: Apoptosis inhib 84.4 0.3 6.6E-06 47.1 0.0 11 213-223 456-466 (556)
221 COG5638 Uncharacterized conser 84.4 8.6 0.00019 35.2 9.0 40 45-84 143-186 (622)
222 PF11767 SET_assoc: Histone ly 83.7 8.9 0.00019 25.7 6.8 55 153-216 11-65 (66)
223 PF10567 Nab6_mRNP_bdg: RNA-re 82.5 2.8 6.1E-05 36.7 5.1 80 142-221 15-107 (309)
224 KOG2253 U1 snRNP complex, subu 81.9 0.11 2.3E-06 50.0 -4.0 71 45-128 37-107 (668)
225 PF02714 DUF221: Domain of unk 81.2 3.3 7.1E-05 37.5 5.5 57 13-71 1-57 (325)
226 KOG4483 Uncharacterized conser 78.7 10 0.00022 34.7 7.4 57 140-203 389-446 (528)
227 KOG4019 Calcineurin-mediated s 78.4 2.4 5.2E-05 34.4 3.1 75 143-223 11-91 (193)
228 KOG4483 Uncharacterized conser 78.0 6 0.00013 36.1 5.8 56 48-111 391-446 (528)
229 PF14111 DUF4283: Domain of un 77.5 1.2 2.7E-05 35.3 1.3 73 9-83 54-139 (153)
230 PF07530 PRE_C2HC: Associated 76.5 8.2 0.00018 26.1 4.9 63 157-222 2-65 (68)
231 KOG4410 5-formyltetrahydrofola 76.4 6.1 0.00013 34.4 5.2 57 49-112 331-394 (396)
232 PF02714 DUF221: Domain of unk 75.7 5.6 0.00012 36.0 5.3 57 95-165 1-57 (325)
233 KOG4285 Mitotic phosphoprotein 74.6 9.5 0.00021 33.6 5.9 55 48-111 197-251 (350)
234 smart00596 PRE_C2HC PRE_C2HC d 74.5 8 0.00017 26.1 4.3 63 157-222 2-65 (69)
235 PF05918 API5: Apoptosis inhib 73.5 1.1 2.4E-05 43.4 0.0 6 333-338 546-551 (556)
236 KOG4410 5-formyltetrahydrofola 72.4 17 0.00037 31.7 6.9 47 142-194 330-377 (396)
237 KOG2891 Surface glycoprotein [ 72.3 17 0.00038 31.5 6.9 36 141-176 148-195 (445)
238 TIGR02542 B_forsyth_147 Bacter 66.2 10 0.00023 28.2 3.8 114 56-194 11-129 (145)
239 PF11823 DUF3343: Protein of u 64.1 40 0.00088 22.9 6.3 62 11-74 2-64 (73)
240 PF03468 XS: XS domain; Inter 64.1 8.6 0.00019 29.1 3.2 40 60-104 29-68 (116)
241 PF15513 DUF4651: Domain of un 63.5 18 0.00038 23.9 4.0 21 157-177 9-29 (62)
242 PF05036 SPOR: Sporulation rel 60.5 36 0.00079 22.7 5.7 59 15-73 10-69 (76)
243 PRK14548 50S ribosomal protein 58.7 44 0.00096 23.6 5.7 57 145-204 23-81 (84)
244 TIGR03636 L23_arch archaeal ri 58.5 50 0.0011 22.9 5.9 58 144-204 15-74 (77)
245 KOG4213 RNA-binding protein La 58.3 19 0.00041 29.3 4.2 55 142-203 111-169 (205)
246 COG1512 Beta-propeller domains 56.4 17 0.00037 32.0 4.1 22 143-164 112-134 (271)
247 PF15513 DUF4651: Domain of un 53.5 39 0.00084 22.3 4.4 19 62-81 8-26 (62)
248 KOG2891 Surface glycoprotein [ 53.1 31 0.00066 30.1 4.9 33 49-82 150-194 (445)
249 PF07530 PRE_C2HC: Associated 50.4 26 0.00057 23.6 3.4 64 63-132 2-65 (68)
250 PF00403 HMA: Heavy-metal-asso 48.8 70 0.0015 20.5 6.3 54 144-203 1-58 (62)
251 PTZ00191 60S ribosomal protein 48.7 80 0.0017 24.9 6.2 57 50-110 83-140 (145)
252 KOG3875 Peroxisomal biogenesis 46.4 1.5E+02 0.0032 26.6 8.1 12 331-342 88-99 (362)
253 KOG4008 rRNA processing protei 45.3 30 0.00066 29.4 3.7 35 44-79 36-70 (261)
254 KOG1295 Nonsense-mediated deca 44.5 16 0.00035 33.3 2.2 68 48-115 7-75 (376)
255 KOG2567 Uncharacterized conser 44.5 52 0.0011 26.3 4.6 6 193-198 60-65 (179)
256 TIGR03636 L23_arch archaeal ri 44.4 1.1E+02 0.0023 21.3 5.7 57 51-111 16-73 (77)
257 PRK12757 cell division protein 44.3 49 0.0011 28.8 4.9 63 16-83 191-253 (256)
258 COG0445 GidA Flavin-dependent 44.3 1.1E+02 0.0025 29.8 7.7 72 12-84 238-336 (621)
259 PRK14548 50S ribosomal protein 43.9 98 0.0021 21.9 5.6 57 51-111 23-80 (84)
260 PF11532 HnRNP_M: Heterogeneou 43.2 8.9 0.00019 20.8 0.2 9 334-342 16-24 (30)
261 KOG2295 C2H2 Zn-finger protein 42.5 5 0.00011 38.3 -1.4 66 48-115 231-296 (648)
262 COG4009 Uncharacterized protei 42.4 1.1E+02 0.0025 21.2 5.4 46 29-74 28-74 (88)
263 COG0445 GidA Flavin-dependent 41.0 1E+02 0.0023 30.1 6.9 83 94-177 238-336 (621)
264 PF14893 PNMA: PNMA 37.9 34 0.00074 31.1 3.1 61 45-106 15-76 (331)
265 KOG2044 5'-3' exonuclease HKE1 37.8 2.4E+02 0.0053 28.9 9.0 22 142-165 667-688 (931)
266 PF12091 DUF3567: Protein of u 37.7 80 0.0017 22.3 4.2 58 8-74 6-76 (85)
267 cd04904 ACT_AAAH ACT domain of 37.4 1.3E+02 0.0028 20.3 6.2 51 62-114 14-65 (74)
268 COG5193 LHP1 La protein, small 36.6 17 0.00036 33.5 1.0 62 141-202 173-244 (438)
269 KOG4019 Calcineurin-mediated s 35.9 64 0.0014 26.4 4.0 42 8-49 49-91 (193)
270 PF03439 Spt5-NGN: Early trans 33.5 93 0.002 21.8 4.3 34 168-206 33-66 (84)
271 KOG2295 C2H2 Zn-finger protein 33.2 6 0.00013 37.8 -2.4 70 142-211 231-300 (648)
272 cd04883 ACT_AcuB C-terminal AC 31.7 1.5E+02 0.0033 19.4 5.4 50 61-114 14-63 (72)
273 KOG4213 RNA-binding protein La 31.2 64 0.0014 26.3 3.3 56 49-112 112-170 (205)
274 PF12764 Gly-rich_Ago1: Glycin 31.0 69 0.0015 23.4 3.1 6 314-319 18-23 (104)
275 KOG4008 rRNA processing protei 31.0 40 0.00087 28.7 2.3 34 138-171 36-69 (261)
276 COG2608 CopZ Copper chaperone 30.1 1.7E+02 0.0036 19.7 4.9 46 143-194 4-49 (71)
277 PTZ00191 60S ribosomal protein 30.1 1.9E+02 0.0042 22.8 5.8 56 145-203 84-141 (145)
278 PF03439 Spt5-NGN: Early trans 29.9 92 0.002 21.8 3.7 33 76-114 34-66 (84)
279 PF11823 DUF3343: Protein of u 29.7 67 0.0015 21.7 2.9 26 185-210 2-27 (73)
280 PF00276 Ribosomal_L23: Riboso 29.5 81 0.0017 22.6 3.4 54 51-104 22-85 (91)
281 cd04909 ACT_PDH-BS C-terminal 28.6 1.7E+02 0.0037 19.0 6.8 52 61-115 14-65 (69)
282 KOG1295 Nonsense-mediated deca 28.6 81 0.0018 29.0 3.9 68 143-210 8-78 (376)
283 cd00187 TOP4c DNA Topoisomeras 28.3 5.2E+02 0.011 24.7 9.5 62 47-112 224-289 (445)
284 KOG3424 40S ribosomal protein 27.1 2.8E+02 0.0061 21.0 6.1 48 59-107 34-84 (132)
285 COG3254 Uncharacterized conser 27.0 1.6E+02 0.0036 21.7 4.5 43 157-202 27-69 (105)
286 COG1512 Beta-propeller domains 26.4 81 0.0018 27.8 3.5 14 325-338 257-270 (271)
287 PF09341 Pcc1: Transcription f 26.2 63 0.0014 22.1 2.3 43 12-54 4-47 (76)
288 PRK10629 EnvZ/OmpR regulon mod 26.1 3.1E+02 0.0066 21.1 7.8 59 154-220 50-109 (127)
289 PHA01632 hypothetical protein 25.6 88 0.0019 20.0 2.5 22 50-71 18-39 (64)
290 cd04880 ACT_AAAH-PDT-like ACT 25.5 2.1E+02 0.0046 19.1 6.4 52 61-114 12-66 (75)
291 KOG4365 Uncharacterized conser 25.4 13 0.00027 34.6 -1.7 79 143-222 4-82 (572)
292 PF14134 DUF4301: Domain of un 25.1 3.1E+02 0.0068 26.5 7.2 37 9-45 197-239 (513)
293 PRK08559 nusG transcription an 24.9 2.4E+02 0.0053 22.3 5.8 35 73-113 33-67 (153)
294 PRK09756 PTS system N-acetylga 24.6 3.1E+02 0.0067 21.9 6.3 66 11-83 80-149 (158)
295 COG0018 ArgS Arginyl-tRNA synt 24.5 5.1E+02 0.011 25.7 8.9 100 62-178 60-166 (577)
296 PF12829 Mhr1: Transcriptional 24.3 2.8E+02 0.006 20.0 5.7 71 38-114 3-73 (91)
297 COG0656 ARA1 Aldo/keto reducta 24.1 4.2E+02 0.0091 23.6 7.5 112 49-175 75-191 (280)
298 PRK11901 hypothetical protein; 24.0 1.3E+02 0.0029 27.1 4.4 60 142-206 245-306 (327)
299 cd04908 ACT_Bt0572_1 N-termina 23.8 2.1E+02 0.0046 18.5 8.6 44 156-203 15-59 (66)
300 COG5584 Predicted small secret 23.4 1.5E+02 0.0031 21.5 3.6 32 54-86 28-59 (103)
301 PRK10927 essential cell divisi 23.3 1.5E+02 0.0033 26.6 4.6 61 16-81 254-314 (319)
302 PF09183 DUF1947: Domain of un 23.0 1.4E+02 0.0031 19.9 3.3 41 17-57 4-47 (65)
303 COG3392 Adenine-specific DNA m 22.9 1.6E+02 0.0034 26.0 4.4 48 16-74 251-298 (330)
304 TIGR00854 pts-sorbose PTS syst 22.8 3.7E+02 0.0081 21.3 6.4 66 11-83 76-145 (151)
305 PRK11901 hypothetical protein; 22.7 1.7E+02 0.0036 26.5 4.7 56 55-114 249-306 (327)
306 PF14893 PNMA: PNMA 22.2 91 0.002 28.4 3.1 77 142-223 18-98 (331)
307 COG1438 ArgR Arginine represso 22.0 4.1E+02 0.0089 21.1 7.3 22 184-205 126-147 (150)
308 PRK10629 EnvZ/OmpR regulon mod 21.7 3.8E+02 0.0082 20.6 7.4 46 60-114 50-95 (127)
309 PF11411 DNA_ligase_IV: DNA li 21.5 73 0.0016 18.5 1.5 15 153-167 20-34 (36)
310 KOG1175 Acyl-CoA synthetase [L 21.5 1.2E+02 0.0026 30.3 4.0 90 60-165 508-598 (626)
311 PF03108 DBD_Tnp_Mut: MuDR fam 21.0 2E+02 0.0043 18.9 3.9 32 16-49 9-40 (67)
312 PF08734 GYD: GYD domain; Int 21.0 3.2E+02 0.0069 19.4 6.5 48 62-114 22-69 (91)
313 PF13193 AMP-binding_C: AMP-bi 20.5 2.7E+02 0.0058 18.4 4.6 35 64-99 1-35 (73)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-52 Score=364.01 Aligned_cols=281 Identities=41% Similarity=0.646 Sum_probs=236.9
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccC-CeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~-g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v 79 (342)
|.|+.+|.+||||||+|++.++|.+|++.||+.+|. |+.|.|..+..+++|||+|||+++++++|++.|++.++.|++|
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdV 195 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDV 195 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEE
Confidence 689999999999999999999999999999999885 9999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc-ccccCceEEEEecCCCCCCHHH
Q 019327 80 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-SAASQVKALYVKNLPKDITQDR 158 (342)
Q Consensus 80 ~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~-~~~~~~~~l~v~~l~~~~~~~~ 158 (342)
.|..+|.++.++||||||+|.++..|..|..+|-...+++.+..+.|.|+.+..... ....+.+.|||+||+.++|+|.
T Consensus 196 ivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~ 275 (506)
T KOG0117|consen 196 IVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEET 275 (506)
T ss_pred EEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHH
Confidence 999999899999999999999999999999998888899999999999999987654 4556679999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCCCCCCCCCCCCCCC
Q 019327 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 238 (342)
Q Consensus 159 l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~ 238 (342)
|+++|++||.|++|+.++| ||||.|.+.++|.+|++.+|+++|+|..|.|.+|+|..+++.......++..
T Consensus 276 lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g~~- 346 (506)
T KOG0117|consen 276 LKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQGGA- 346 (506)
T ss_pred HHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccchhhhhcccc-
Confidence 9999999999999998855 9999999999999999999999999999999999998877665433333322
Q ss_pred CCCCCCC--CCCC-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q 019327 239 NPTYPPH--LGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPG----GMAMLPMLLP 290 (342)
Q Consensus 239 ~~~~~~~--~g~g-~~~~~~g~~g~g~-~~~~~~~~~~~~~g~~~~----g~~~~p~~~~ 290 (342)
.+.+.+. .... -+...++..+++. ....+.+|++++.+..+. +|.|+|++.+
T Consensus 347 ~~~~~~~~~p~~~~~~~~~~g~~~~g~~~~~y~~~P~~y~~~~~~~~~~~~m~~~~~~l~ 406 (506)
T KOG0117|consen 347 YPTYYYFGPPVFYAIPPAPRGAGRGGGSRAGYYSQPGMYGTGHAPGLKGYGMHMAPGGLE 406 (506)
T ss_pred CCCccccCCcccCCCCCCCcCcccCCCCccccccCCccccCccccccccCCccccccccc
Confidence 1111111 1111 0111222222222 345567888888887777 7888888877
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2e-42 Score=325.84 Aligned_cols=216 Identities=33% Similarity=0.612 Sum_probs=191.3
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccC-CeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~-g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v 79 (342)
|+| .+|+++|||||+|.+.|+|++|++.||+..|. ++.|.|.++..+++|||+|||+++|+++|.++|+++++.++++
T Consensus 91 ~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~v 169 (578)
T TIGR01648 91 MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDV 169 (578)
T ss_pred EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEE
Confidence 356 78999999999999999999999999998885 8889999999999999999999999999999999997646666
Q ss_pred EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc-ccccCceEEEEecCCCCCCHHH
Q 019327 80 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-SAASQVKALYVKNLPKDITQDR 158 (342)
Q Consensus 80 ~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~-~~~~~~~~l~v~~l~~~~~~~~ 158 (342)
.++..+...+++++||||+|+++++|++|++.|+...+.+.++.|.|+|+.+..... ......++|||+||++++++++
T Consensus 170 Iv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~ 249 (578)
T TIGR01648 170 IVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEI 249 (578)
T ss_pred EEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHH
Confidence 665443456788999999999999999999998766678899999999998875433 2234468899999999999999
Q ss_pred HHHHHhcC--CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 159 LKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 159 l~~~f~~~--G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
|+++|++| |+|++|+++ ++||||+|++.++|++|++.||+..|.|+.|+|+|++++...
T Consensus 250 L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 250 IEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99999999 999999876 469999999999999999999999999999999999887643
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.1e-42 Score=313.92 Aligned_cols=222 Identities=23% Similarity=0.387 Sum_probs=195.5
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc------cCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------AKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~------~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
|+|+.||+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+++ ..++|||+|||.++++++|+++|++||+
T Consensus 36 ~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 115 (352)
T TIGR01661 36 VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ 115 (352)
T ss_pred EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCC
Confidence 4688899999999999999999999999999999999999998876 3458999999999999999999999999
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc------------------
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES------------------ 136 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~------------------ 136 (342)
|..++++.+ ..++.+++||||+|.+.++|+.|++.|++..+......|.|.++.......
T Consensus 116 -i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (352)
T TIGR01661 116 -IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTR 193 (352)
T ss_pred -EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCC
Confidence 999999988 567889999999999999999999999997554445667777764332000
Q ss_pred ----------------------------------------------------------------------ccccCceEEE
Q 019327 137 ----------------------------------------------------------------------SAASQVKALY 146 (342)
Q Consensus 137 ----------------------------------------------------------------------~~~~~~~~l~ 146 (342)
.......+||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf 273 (352)
T TIGR01661 194 VPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIF 273 (352)
T ss_pred CCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEE
Confidence 0011123699
Q ss_pred EecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 147 v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
|+|||+++++++|+++|++||.|++++|+.|..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|+|+..+..
T Consensus 274 V~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 274 VYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999999999999999998888899999999999999999999999999999999999988764
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.2e-38 Score=306.42 Aligned_cols=215 Identities=28% Similarity=0.468 Sum_probs=190.9
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc-----------cCCeEEEcCCCCCCCHHHHHHHHHhhC
Q 019327 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-----------AKHRLFIGNVPRNWGEDDMRKAVTKIG 73 (342)
Q Consensus 5 ~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~-----------~~~~l~v~nl~~~~te~~l~~~f~~~G 73 (342)
.+|+++|||||+|.+.|+|.+|++.+|+..+.++.|.|.... ..++|||+||++++|+++|+++|+.||
T Consensus 124 ~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG 203 (562)
T TIGR01628 124 ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG 203 (562)
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcC
Confidence 478899999999999999999999999999999999986432 235799999999999999999999999
Q ss_pred CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC----CCCCeeecCCCCCccc-------------
Q 019327 74 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD----DNAPTVSWADPRNAES------------- 136 (342)
Q Consensus 74 ~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~----~~~i~v~~~~~~~~~~------------- 136 (342)
+ |+++.++++ .++.++|||||+|++.++|.+|++.+++. .+. ++.+.|.++..+....
T Consensus 204 ~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~--~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~ 278 (562)
T TIGR01628 204 E-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK--KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQE 278 (562)
T ss_pred C-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc--EecccccceeeEeecccChhhhHHHHHhhHHhhhhh
Confidence 9 999999998 57889999999999999999999999987 556 8888888876654331
Q ss_pred -ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 137 -SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 137 -~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
.......+|||+||++++++++|+++|++||.|++|+|+.+ .++.+++||||+|.+.++|.+|++.||+..|.|+.|.
T Consensus 279 ~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~ 357 (562)
T TIGR01628 279 RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY 357 (562)
T ss_pred hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence 11334678999999999999999999999999999999999 4455699999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 019327 216 CSLAKPQADQ 225 (342)
Q Consensus 216 v~~a~~~~~~ 225 (342)
|.+|..+..+
T Consensus 358 V~~a~~k~~~ 367 (562)
T TIGR01628 358 VALAQRKEQR 367 (562)
T ss_pred EEeccCcHHH
Confidence 9999987654
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.6e-38 Score=257.95 Aligned_cols=220 Identities=24% Similarity=0.391 Sum_probs=198.6
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC------CeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------HRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~------~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
|+|+.||+|.||+||.|-+++||++|++.|||..|..+.|+|+++++. ..|||.+||+.+|+.||+++|++||.
T Consensus 74 vRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr 153 (360)
T KOG0145|consen 74 VRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR 153 (360)
T ss_pred eeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhh
Confidence 589999999999999999999999999999999999999999998876 48999999999999999999999999
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc------------------
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES------------------ 136 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~------------------ 136 (342)
|..-+|+.| ..++.+||.+||.|+..++|+.|++.||+..-.-.-.+|.|+++.......
T Consensus 154 -IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~G 231 (360)
T KOG0145|consen 154 -IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGG 231 (360)
T ss_pred -hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCC
Confidence 888888888 788999999999999999999999999998655566788888876432211
Q ss_pred -----------------------------------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEec
Q 019327 137 -----------------------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175 (342)
Q Consensus 137 -----------------------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~ 175 (342)
.......+|||-||.++.+|..|.++|.+||.|..|+|+
T Consensus 232 p~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvi 311 (360)
T KOG0145|consen 232 PMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVI 311 (360)
T ss_pred cccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEE
Confidence 000115899999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 176 ~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
+|-.+.+.|||+||++.+.++|..||..||+..+.++.|.|+|...+
T Consensus 312 rD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 312 RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999997654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.1e-37 Score=276.62 Aligned_cols=172 Identities=23% Similarity=0.419 Sum_probs=156.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++||++|+++|+.||+ |++|+|++| ..++++++||||+|.++++|++|++.|++. .+.++.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~--~l~gr~i~ 180 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNLNGI--TVRNKRLK 180 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHcCCC--ccCCceee
Confidence 35689999999999999999999999999 999999999 678999999999999999999999999985 78899999
Q ss_pred eecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC
Q 019327 126 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 205 (342)
Q Consensus 126 v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 205 (342)
|.++.+.. .....++|||.|||.++|+++|+++|++||.|++++|+.++.+..+++||||+|++.++|++||+.||
T Consensus 181 V~~a~p~~----~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 181 VSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred eecccccc----cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 99987653 22345789999999999999999999999999999999999888889999999999999999999999
Q ss_pred CceeCC--cEEEEEeccCCCCC
Q 019327 206 KYEIDG--QVLDCSLAKPQADQ 225 (342)
Q Consensus 206 ~~~~~g--~~i~v~~a~~~~~~ 225 (342)
+..+.+ +.|+|.+++.....
T Consensus 257 g~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCccCCCceeEEEEECCccccc
Confidence 998876 78999999876543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-37 Score=301.65 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=195.8
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------CCeEEEcCCCCCCCHHHHHHHHHhh
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------KHRLFIGNVPRNWGEDDMRKAVTKI 72 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------~~~l~v~nl~~~~te~~l~~~f~~~ 72 (342)
++|+.|++++|||||+|.+.++|++|++.+|+..|.|+.|+|.|+.. ..+|||+|||+++++++|+++|+.|
T Consensus 33 ~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~ 112 (562)
T TIGR01628 33 CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKF 112 (562)
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhc
Confidence 36888999999999999999999999999999999999999998752 3579999999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc-cccccCceEEEEecCC
Q 019327 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-SSAASQVKALYVKNLP 151 (342)
Q Consensus 73 G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~-~~~~~~~~~l~v~~l~ 151 (342)
|. |.+|+++.+ .+++++|||||+|.+.++|++|++.+++. .++++.|.|......... .......++|||+||+
T Consensus 113 G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~ 187 (562)
T TIGR01628 113 GN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLD 187 (562)
T ss_pred CC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--EecCceEEEeccccccccccccccCCCeEEEeCCC
Confidence 99 999999998 57889999999999999999999999985 788999998776555433 2234456889999999
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC----CcEEEEEeccCCCCC
Q 019327 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID----GQVLDCSLAKPQADQ 225 (342)
Q Consensus 152 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~----g~~i~v~~a~~~~~~ 225 (342)
.++|+++|+++|++||.|+++.|+.+..+ .+++||||+|++.++|.+|++.||+..+. ++.|.|.++..+.++
T Consensus 188 ~~~tee~L~~~F~~fG~i~~~~i~~~~~g-~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 188 PSVNEDKLRELFAKFGEITSAAVMKDGSG-RSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred CcCCHHHHHHHHHhcCCEEEEEEEECCCC-CcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 99999999999999999999999988654 45999999999999999999999999999 999999998766543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.4e-33 Score=265.03 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=171.8
Q ss_pred CccceEEEEeCCHHHHHHHHHHh--CCCccCCeEEEEeecccC------------------CeEEEcCCCCCCCHHHHHH
Q 019327 8 EAKGYAFVTFRTKELASQAIEEL--NSCELKGKKIKCSAAQAK------------------HRLFIGNVPRNWGEDDMRK 67 (342)
Q Consensus 8 ~~~G~afV~f~~~e~A~~a~~~~--~g~~~~g~~i~v~~~~~~------------------~~l~v~nl~~~~te~~l~~ 67 (342)
++|+||||+|.+.|+|.+|++.+ ++..|.|+.|+|.+++.. .+|||.||++.+|+++|++
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~ 115 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQ 115 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHH
Confidence 46799999999999999999974 678999999999876421 1689999999999999999
Q ss_pred HHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc------------
Q 019327 68 AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE------------ 135 (342)
Q Consensus 68 ~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~------------ 135 (342)
+|+.||+ |++|+|+++ . .+++|||+|.+.++|.+|++.||+..+.-..+.|+|+|+.+....
T Consensus 116 ~F~~~G~-V~~v~i~~~-~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt 189 (481)
T TIGR01649 116 IFNPYGK-VLRIVTFTK-N----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYT 189 (481)
T ss_pred HHhccCC-EEEEEEEec-C----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCc
Confidence 9999999 999999887 1 246899999999999999999999744333345666665431100
Q ss_pred --------c-----------------------------------------------------------------------
Q 019327 136 --------S----------------------------------------------------------------------- 136 (342)
Q Consensus 136 --------~----------------------------------------------------------------------- 136 (342)
.
T Consensus 190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
T TIGR01649 190 NPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGP 269 (481)
T ss_pred CCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCC
Confidence 0
Q ss_pred ccccCceEEEEecCCC-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 137 SAASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
.....+.+|||+||++ .+|+++|+++|++||.|.+|+|++++ +++|||+|.+.++|++|+..||+..|.|+.|+
T Consensus 270 ~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~ 344 (481)
T TIGR01649 270 AGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLR 344 (481)
T ss_pred CCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 0012356999999998 69999999999999999999999874 79999999999999999999999999999999
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|++++...
T Consensus 345 v~~s~~~~ 352 (481)
T TIGR01649 345 VCPSKQQN 352 (481)
T ss_pred EEEccccc
Confidence 99987654
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=232.76 Aligned_cols=170 Identities=25% Similarity=0.500 Sum_probs=157.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
..|||+.|..+++-|+|++.|.+||+ |.+++|++| ..++++|||+||.|...++|+.||..|++. -|..|.|+.+|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IRTNW 138 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIRTNW 138 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceeeccc
Confidence 37999999999999999999999999 999999999 689999999999999999999999999997 89999999999
Q ss_pred CCCCCccc------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHH
Q 019327 129 ADPRNAES------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196 (342)
Q Consensus 129 ~~~~~~~~------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~ 196 (342)
+..+.... ......++|||+|++..++|++|++.|+.||.|.+|+|.++ ++|+||+|++.|+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 98876432 44556799999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhcCCceeCCcEEEEEeccCCCCCCCC
Q 019327 197 AMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 228 (342)
Q Consensus 197 a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~ 228 (342)
|..||..+|+.+|.|+.++|+|.+........
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~~~~~ 244 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDGINN 244 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCCCCCc
Confidence 99999999999999999999999876655443
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=252.24 Aligned_cols=221 Identities=21% Similarity=0.412 Sum_probs=197.1
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCc-cCC--eEEEEeeccc-------CCeEEEcCCCCCCCHHHHHHHHH
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKG--KKIKCSAAQA-------KHRLFIGNVPRNWGEDDMRKAVT 70 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~-~~g--~~i~v~~~~~-------~~~l~v~nl~~~~te~~l~~~f~ 70 (342)
|||+.|+.++|||||+|.+.++|.+|+.+|++.+ |.| +.|+|.+++. +++|||+-|++.+||.||+++|+
T Consensus 67 ~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs 146 (510)
T KOG0144|consen 67 IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFS 146 (510)
T ss_pred ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHH
Confidence 6899999999999999999999999999999865 444 6788877653 56899999999999999999999
Q ss_pred hhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC-CCCCCCCCCeeecCCCCCcccccccC--------
Q 019327 71 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP-KFKLDDNAPTVSWADPRNAESSAASQ-------- 141 (342)
Q Consensus 71 ~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~-~~~~~~~~i~v~~~~~~~~~~~~~~~-------- 141 (342)
+||. |++|.|++| ..+.+||||||.|.+.|.|..|++.||+. .++-+..++.|+|++++.+...+...
T Consensus 147 ~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~q 223 (510)
T KOG0144|consen 147 RFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQ 223 (510)
T ss_pred hhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHH
Confidence 9999 999999999 68999999999999999999999999986 34445678999999987665210000
Q ss_pred --------------------------------------------------------------------------------
Q 019327 142 -------------------------------------------------------------------------------- 141 (342)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (342)
T Consensus 224 ql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qt 303 (510)
T KOG0144|consen 224 QLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQT 303 (510)
T ss_pred HhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCcccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 019327 142 -------------------------------------------------------------------------------- 141 (342)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (342)
T Consensus 304 s~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~ 383 (510)
T KOG0144|consen 304 SFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDH 383 (510)
T ss_pred CCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhH
Confidence
Q ss_pred ----------------------------------------ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCC
Q 019327 142 ----------------------------------------VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 181 (342)
Q Consensus 142 ----------------------------------------~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~ 181 (342)
..+|||.+||.+.-+.+|-..|..||.|.+.++..|+.++
T Consensus 384 tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tn 463 (510)
T KOG0144|consen 384 TQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTN 463 (510)
T ss_pred HHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccC
Confidence 4789999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 182 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 182 ~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
.++.|+||.|++..+|..||..||+..|..++++|...+.+..
T Consensus 464 lskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 464 LSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999999999999998876553
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.5e-33 Score=271.32 Aligned_cols=213 Identities=23% Similarity=0.385 Sum_probs=179.1
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec-----------------------------------ccC
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA-----------------------------------QAK 48 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~-----------------------------------~~~ 48 (342)
..+++++|||||+|.+.|+|..||+ |++..|.|..|+|... ...
T Consensus 217 ~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (509)
T TIGR01642 217 VNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSK 295 (509)
T ss_pred EEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCC
Confidence 3456889999999999999999995 9999999999988531 123
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
++|||+|||..+|+++|+++|+.||. |..+.|+++ ..++.++|||||+|.+.++|..|++.|++. .+.++.|.|.+
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~ 371 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESFGD-LKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQR 371 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEE
Confidence 68999999999999999999999999 999999998 578999999999999999999999999985 78899999988
Q ss_pred CCCCCccc------------------------ccccCceEEEEecCCCC--C--------CHHHHHHHHhcCCcEEEEEe
Q 019327 129 ADPRNAES------------------------SAASQVKALYVKNLPKD--I--------TQDRLKELFAHHGKITKVVI 174 (342)
Q Consensus 129 ~~~~~~~~------------------------~~~~~~~~l~v~~l~~~--~--------~~~~l~~~f~~~G~i~~v~i 174 (342)
+....... .....+.+|+|.||... + ..++|+++|++||.|+.|.|
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 75332110 01124678999999532 1 12679999999999999999
Q ss_pred cCCCC---CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 175 PPAKP---GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 175 ~~~~~---~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
+++.. .....|++||+|++.++|++|+..||+..|.|+.|.|.|...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 87632 234478999999999999999999999999999999999764
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.4e-32 Score=261.09 Aligned_cols=213 Identities=21% Similarity=0.360 Sum_probs=181.5
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc------------------cCCeEEEcCCCCCCCH
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------------------AKHRLFIGNVPRNWGE 62 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~------------------~~~~l~v~nl~~~~te 62 (342)
|+|+.|++++|||||+|.+.++|.+|++ |++..|.|+.|.|..+. ..++|||+|||..+|+
T Consensus 122 ~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te 200 (457)
T TIGR01622 122 IKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITE 200 (457)
T ss_pred eecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCH
Confidence 4678899999999999999999999997 99999999999987542 1368999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc------
Q 019327 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES------ 136 (342)
Q Consensus 63 ~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~------ 136 (342)
++|+++|++||. |..|.|+.+ ..++.++|||||+|.+.++|.+|++.|++ +.+.++.|.|.|+.......
T Consensus 201 ~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~ 276 (457)
T TIGR01622 201 QELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAKEALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTF 276 (457)
T ss_pred HHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhcCC--cEECCEEEEEEEccCCCccccchhhh
Confidence 999999999999 999999999 57789999999999999999999999998 48899999999953110000
Q ss_pred ------------------------------------------------------------------------------c-
Q 019327 137 ------------------------------------------------------------------------------S- 137 (342)
Q Consensus 137 ------------------------------------------------------------------------------~- 137 (342)
.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
T TIGR01622 277 EDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPST 356 (457)
T ss_pred ccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcc
Confidence 0
Q ss_pred -cccCceEEEEecCCCCCC----------HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 138 -AASQVKALYVKNLPKDIT----------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 138 -~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
......+|+|.||....+ .+||++.|++||.|+.|.|.... ..|++||+|.+.++|.+|++.||+
T Consensus 357 ~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnG 432 (457)
T TIGR01622 357 NNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN----SAGKIYLKFSSVDAALAAFQALNG 432 (457)
T ss_pred cCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC----CceeEEEEECCHHHHHHHHHHhcC
Confidence 113357889999955443 36899999999999999997432 279999999999999999999999
Q ss_pred ceeCCcEEEEEeccCC
Q 019327 207 YEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 207 ~~~~g~~i~v~~a~~~ 222 (342)
..|+|+.|.|.+....
T Consensus 433 r~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 433 RYFGGKMITAAFVVND 448 (457)
T ss_pred cccCCeEEEEEEEcHH
Confidence 9999999999997643
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.7e-32 Score=260.29 Aligned_cols=163 Identities=20% Similarity=0.317 Sum_probs=139.9
Q ss_pred CeEEEcCCCC-CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 49 HRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 49 ~~l~v~nl~~-~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
++|||+||++ .+|+++|+++|+.||. |.+|+|+++ .++||||+|.+.++|+.|++.|++. .+.++.|.|.
T Consensus 276 ~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~~A~~Ai~~lng~--~l~g~~l~v~ 346 (481)
T TIGR01649 276 SVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPYQAQLALTHLNGV--KLFGKPLRVC 346 (481)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC--EECCceEEEE
Confidence 4899999998 6999999999999999 999999987 2689999999999999999999996 7889999998
Q ss_pred cCCCCCcccc---------------------------------cccCceEEEEecCCCCCCHHHHHHHHhcCCc--EEEE
Q 019327 128 WADPRNAESS---------------------------------AASQVKALYVKNLPKDITQDRLKELFAHHGK--ITKV 172 (342)
Q Consensus 128 ~~~~~~~~~~---------------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~v 172 (342)
++........ ....+.+|||.|||.++++++|+++|++||. |+.+
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 8754311000 0123578999999999999999999999998 8889
Q ss_pred EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcE------EEEEeccCC
Q 019327 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV------LDCSLAKPQ 222 (342)
Q Consensus 173 ~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~------i~v~~a~~~ 222 (342)
++.....+ ++++|||+|++.++|.+||..||+..|.++. |+|+|++++
T Consensus 427 k~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 427 KFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 88765432 3789999999999999999999999999985 999999864
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=247.15 Aligned_cols=219 Identities=26% Similarity=0.478 Sum_probs=192.2
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------------------------------C
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------------------------------K 48 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------------------------------~ 48 (342)
+.|..+++++||+||+|.-.||+.+|++.+++..+.|+.|.|+.+.. .
T Consensus 38 Vt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k 117 (678)
T KOG0127|consen 38 VTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPK 117 (678)
T ss_pred ecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCcc
Confidence 35778889999999999999999999999999999999999874431 2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
-+|.|.|||+.+.+.+|+.+|+.||. |.+|.|.+. ..++..|||||+|....+|..|++.+|+. .|++++|-|.|
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFaFV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDW 192 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFAFVQFKEKKDAEKALEFFNGN--KIDGRPVAVDW 192 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceEEEEEeeHHHHHHHHHhccCc--eecCceeEEee
Confidence 37999999999999999999999999 999999876 56677799999999999999999999985 99999999999
Q ss_pred CCCCCcccc-----------------------------------------c--cc-------------------------
Q 019327 129 ADPRNAESS-----------------------------------------A--AS------------------------- 140 (342)
Q Consensus 129 ~~~~~~~~~-----------------------------------------~--~~------------------------- 140 (342)
+.++..-.. . +.
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 875532100 0 00
Q ss_pred ------------------CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 141 ------------------QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 141 ------------------~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
...+|||.|||.++|+++|.++|++||+|.++.|+.++.|..++|.|||.|.+..+|+.||+
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 03789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-----C-ceeCCcEEEEEeccCCCC
Q 019327 203 NTE-----K-YEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 203 ~l~-----~-~~~~g~~i~v~~a~~~~~ 224 (342)
... + ..|+||.|.|..|.++..
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHH
Confidence 862 3 678999999999987654
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.3e-32 Score=254.71 Aligned_cols=175 Identities=23% Similarity=0.460 Sum_probs=156.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||+||++++++++|+++|++||+ |.+|++++| ..+++++|||||+|.+.++|++|++.|++. .++++.|+|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV 181 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKV 181 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeee
Confidence 4579999999999999999999999999 999999999 678999999999999999999999999985 789999999
Q ss_pred ecCCCCCccc-------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHH
Q 019327 127 SWADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199 (342)
Q Consensus 127 ~~~~~~~~~~-------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~ 199 (342)
.+........ ......++|||+||+.++++++|+++|+.||.|++++|.++..++.++|||||+|++.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 8754332110 122345799999999999999999999999999999999999888889999999999999999
Q ss_pred HHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 200 ALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 200 a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
||+.||+..|+|+.|+|.++.++...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999999875543
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=8.7e-31 Score=247.45 Aligned_cols=127 Identities=24% Similarity=0.411 Sum_probs=115.6
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc-----------------cCCeEEEcCCCCCCCHH
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-----------------AKHRLFIGNVPRNWGED 63 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~-----------------~~~~l~v~nl~~~~te~ 63 (342)
++|+.|++++|||||+|.+.++|.+|++.+||..|.|+.|+|.+.. ..++|||+||+++++++
T Consensus 140 ~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vtee 219 (612)
T TIGR01645 140 SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSET 219 (612)
T ss_pred eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHH
Confidence 4688999999999999999999999999999999999999996532 23689999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCC
Q 019327 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131 (342)
Q Consensus 64 ~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~ 131 (342)
+|+++|+.||+ |++|+|.+| ..+++++|||||+|.+.++|.+|++.||+. .++|+.|+|.++..
T Consensus 220 dLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kAI~amNg~--elgGr~LrV~kAi~ 283 (612)
T TIGR01645 220 DIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASMNLF--DLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEecCC
Confidence 99999999999 999999999 578899999999999999999999999984 88899888877553
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=6.6e-31 Score=241.53 Aligned_cols=169 Identities=26% Similarity=0.454 Sum_probs=154.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||.+++|++|+++|++||+ |.+|+|++| ..+++++|||||+|.+.++|++|++.|++. .+.++.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 5789999999999999999999999999 999999999 678999999999999999999999999985 889999999
Q ss_pred ecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
+++.+... .....+|||+|||.++++++|+++|++||.|..+.|+.+..+..+++||||+|++.++|++|++.||+
T Consensus 78 ~~a~~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeeccccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 99877642 23457899999999999999999999999999999999887777799999999999999999999999
Q ss_pred ceeCC--cEEEEEeccCCC
Q 019327 207 YEIDG--QVLDCSLAKPQA 223 (342)
Q Consensus 207 ~~~~g--~~i~v~~a~~~~ 223 (342)
..+.+ .+|.|.++..+.
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 98877 678999987655
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.6e-30 Score=230.36 Aligned_cols=208 Identities=25% Similarity=0.426 Sum_probs=187.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC-CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCC
Q 019327 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87 (342)
Q Consensus 9 ~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~-~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~ 87 (342)
|.|||||.|.+.++|++||+++|...|+|+.|+|.|+..+ ..|||.||++++|..+|.++|+.||+ |++|+|.++ .
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~--~ 112 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATD--E 112 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEc--C
Confidence 9999999999999999999999999999999999998644 45999999999999999999999999 999999998 4
Q ss_pred CCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccc----cccCceEEEEecCCCCCCHHHHHHHH
Q 019327 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS----AASQVKALYVKNLPKDITQDRLKELF 163 (342)
Q Consensus 88 ~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~----~~~~~~~l~v~~l~~~~~~~~l~~~f 163 (342)
.| ++|| ||+|++++.|++|++.+|+. .+.++.|.|.....+..... .......++|.+++.++++++|.++|
T Consensus 113 ~g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f 188 (369)
T KOG0123|consen 113 NG-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF 188 (369)
T ss_pred CC-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhh
Confidence 55 9999 99999999999999999996 78899998877665544321 23346789999999999999999999
Q ss_pred hcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 164 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 164 ~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
..+|.|..+.|+.+..+. +++|+||.|++.++|..|++.|++..+.+..+.|..+..+.+
T Consensus 189 ~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 189 SAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred cccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhccCCcCCccceeecccccchh
Confidence 999999999999998877 499999999999999999999999999999999998887443
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=225.91 Aligned_cols=175 Identities=28% Similarity=0.481 Sum_probs=154.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCC-CCCCCCCCeee
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK-FKLDDNAPTVS 127 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~~~~i~v~ 127 (342)
-+|||+.||+.|+|.||+++|++||. |.+|.|++| +.++.++|||||.|.+.++|.+|+.+|++.. +.-...+|.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 48999999999999999999999999 999999999 7899999999999999999999999998862 22234678888
Q ss_pred cCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCc
Q 019327 128 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 207 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~ 207 (342)
+++.+.+.. ...++|||+-|+..+||.+|+++|++||.|++|.|++|....+ ||||||+|.+.|.|..||+.||+.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccc
Confidence 888775432 3468999999999999999999999999999999999987666 999999999999999999999985
Q ss_pred -eeCC--cEEEEEeccCCCCCCCCC
Q 019327 208 -EIDG--QVLDCSLAKPQADQKTSG 229 (342)
Q Consensus 208 -~~~g--~~i~v~~a~~~~~~~~~~ 229 (342)
.+.| .+|.|+||.++.++....
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHH
Confidence 5555 699999999887765543
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=210.27 Aligned_cols=194 Identities=20% Similarity=0.365 Sum_probs=162.1
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEe------------ecc----cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCS------------AAQ----AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~------------~~~----~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v 79 (342)
...+.|+|.+++.+-.+. .|.|+ |.. .-+.|||+.||.++.|++|.-+|++.|+ |.++
T Consensus 40 ~~~~~eaal~al~E~tgy-----~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~el 113 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGY-----TLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYEL 113 (506)
T ss_pred ccccHHHHHHHHHHhcCc-----eEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeE
Confidence 344578898888776543 33333 211 2368999999999999999999999999 9999
Q ss_pred EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHH
Q 019327 80 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRL 159 (342)
Q Consensus 80 ~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l 159 (342)
+||.| ..+|.+||||||+|.+.++|++|++.||+.++. .|+.|.|+.+... ++|||+|||.++++++|
T Consensus 114 RLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Svan----------~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 114 RLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVAN----------CRLFIGNIPKTKKKEEI 181 (506)
T ss_pred EEeec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeeec----------ceeEeccCCccccHHHH
Confidence 99999 589999999999999999999999999997554 6888888766544 89999999999999999
Q ss_pred HHHHhcCCc-EEEEEecCCCC-CCCCCceEEEEeCCHHHHHHHHHhcC--CceeCCcEEEEEeccCCCCCCC
Q 019327 160 KELFAHHGK-ITKVVIPPAKP-GQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQADQKT 227 (342)
Q Consensus 160 ~~~f~~~G~-i~~v~i~~~~~-~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a~~~~~~~~ 227 (342)
.+.|++.++ |++|.|..... ..++||||||+|++...|..|..+|- ...+.|+.|.|+||.|......
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~de 253 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDE 253 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCCh
Confidence 999999875 77888777643 44579999999999999999998875 3578899999999998875433
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=6.9e-29 Score=234.37 Aligned_cols=192 Identities=21% Similarity=0.359 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHhCCCccCCeEEEEeec-----------ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCC
Q 019327 19 TKELASQAIEELNSCELKGKKIKCSAA-----------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 87 (342)
Q Consensus 19 ~~e~A~~a~~~~~g~~~~g~~i~v~~~-----------~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~ 87 (342)
-.|+|.+|+..+++..+.....+..+. ...++|||+|||++++|++|+++|++||. |.+|+|++| .
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~ 94 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--F 94 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--C
Confidence 478999999988886665433332221 23479999999999999999999999999 999999999 6
Q ss_pred CCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCC
Q 019327 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 167 (342)
Q Consensus 88 ~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G 167 (342)
+++++|||||+|.+.++|++||+.|++..+ ..++.+.|.++.. .++|||+|||.++++++|.++|++++
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i-~~Gr~l~V~~S~~----------~~rLFVgNLP~~~TeeeL~eeFskv~ 163 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEI-RPGRLLGVCISVD----------NCRLFVGGIPKNKKREEILEEFSKVT 163 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCee-cCCcccccccccc----------CceeEeecCCcchhhHHHHHHhhccc
Confidence 899999999999999999999999998632 2467777765532 38899999999999999999999986
Q ss_pred c-EEEEEec-CCCCCCCCCceEEEEeCCHHHHHHHHHhcCC--ceeCCcEEEEEeccCCCC
Q 019327 168 K-ITKVVIP-PAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 168 ~-i~~v~i~-~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~a~~~~~ 224 (342)
. ++++.+. .+....++++||||+|++.++|.+|+++|+. ..+.++.|.|+|+.+...
T Consensus 164 egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 164 EGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred CCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc
Confidence 3 4454443 3334456699999999999999999998864 468899999999987653
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=6e-29 Score=236.22 Aligned_cols=172 Identities=21% Similarity=0.402 Sum_probs=152.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||..+++++|+++|++||+ |.+|+|+.| ..+++++|||||+|.+.++|++||+ |++. .+.++.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeE
Confidence 45679999999999999999999999998 999999999 6789999999999999999999997 6765 77899999
Q ss_pred eecCCCCCccc--------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHH
Q 019327 126 VSWADPRNAES--------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 197 (342)
Q Consensus 126 v~~~~~~~~~~--------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a 197 (342)
|.++....... ......++|||+|||..+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 88765432211 1112358999999999999999999999999999999999998878899999999999999
Q ss_pred HHHHHhcCCceeCCcEEEEEeccCC
Q 019327 198 MKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 198 ~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
.+|++.||+..|.|+.|.|.|+...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999998743
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9e-30 Score=208.77 Aligned_cols=173 Identities=26% Similarity=0.460 Sum_probs=160.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.++++.|.|.-||..+|++||+.+|...|+ |++|++++| +.+|.+.||+||.|.+++||++|+..||+ +++..+.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTI 113 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceE
Confidence 456678999999999999999999999999 999999999 79999999999999999999999999998 58999999
Q ss_pred eeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 125 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
+|+++.|.. ......+|||++||..+|..||+++|++||.|...+|+.|..++.+||.+||.|+..++|+.||+.|
T Consensus 114 KVSyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 114 KVSYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred EEEeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 999999984 4555689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeCC--cEEEEEeccCCCCC
Q 019327 205 EKYEIDG--QVLDCSLAKPQADQ 225 (342)
Q Consensus 205 ~~~~~~g--~~i~v~~a~~~~~~ 225 (342)
|+..-.| .+|.|+||..+...
T Consensus 190 NG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccc
Confidence 9987666 69999999866443
No 24
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=6.9e-28 Score=187.88 Aligned_cols=176 Identities=18% Similarity=0.316 Sum_probs=158.3
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
..+...+|||+||+..++++.|+++|-+.|+ |..+.+.+| +.+...+|||||||.++|+|+.|++-|+. +++-+++
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagp-Vv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln~--VkLYgrp 80 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGP-VVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILNM--VKLYGRP 80 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCc-eeeeecchh-hhcccccceeEEEEechhhhHHHHHHHHH--HHhcCce
Confidence 3456789999999999999999999999999 999999999 77888999999999999999999999994 6899999
Q ss_pred CeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEE-EEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 124 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 124 i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
|+|+.+.... .......+|||+||.++++|..|.+.|+.||.|.. -+|+++..++.+++|+||.|++.+.+.+|+.
T Consensus 81 Irv~kas~~~---~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 81 IRVNKASAHQ---KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred eEEEeccccc---ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 9999887322 23334589999999999999999999999998765 5899999999989999999999999999999
Q ss_pred hcCCceeCCcEEEEEeccCCCCCC
Q 019327 203 NTEKYEIDGQVLDCSLAKPQADQK 226 (342)
Q Consensus 203 ~l~~~~~~g~~i~v~~a~~~~~~~ 226 (342)
.+|+..+..++|+|+++..+..+.
T Consensus 158 s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999998776543
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.3e-26 Score=209.76 Aligned_cols=211 Identities=27% Similarity=0.495 Sum_probs=186.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc--------------cCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------------AKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 9 ~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~--------------~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
+||| ||+|.++++|.+|++.+||..+.+++|.|.... .-+.++|.+++.+++++.|.++|..+|.
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~ 193 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS 193 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc
Confidence 9999 999999999999999999999999999995433 2357899999999999999999999999
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc--------------cccc
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES--------------SAAS 140 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~--------------~~~~ 140 (342)
|.++.++.+ ..+.+++|+||+|+++++|..|++.+++. ...+..+.|..+....... ....
T Consensus 194 -i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~~--~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~ 268 (369)
T KOG0123|consen 194 -ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNGK--IFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSL 268 (369)
T ss_pred -ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccCC--cCCccceeecccccchhhHHHHhhhhHhhhhhccccc
Confidence 999999998 67779999999999999999999999997 4557777777766533221 2244
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
...+|||.||+..++++.|++.|+.||+|++++|+.+..+.. ++|+||+|.+.++|.+|+..+|+..+.++.|.|.++.
T Consensus 269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 578999999999999999999999999999999999887666 9999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 019327 221 PQADQK 226 (342)
Q Consensus 221 ~~~~~~ 226 (342)
.+..+.
T Consensus 348 r~~~r~ 353 (369)
T KOG0123|consen 348 RKEDRR 353 (369)
T ss_pred hhccch
Confidence 555443
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.9e-26 Score=219.92 Aligned_cols=168 Identities=17% Similarity=0.304 Sum_probs=138.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhh-----------CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKI-----------GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~-----------G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
...++|||+|||+++|+++|+++|..+ +..|..+.+. ..++||||+|.+.++|..||+ |++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 345799999999999999999999986 2213333332 347899999999999999994 887
Q ss_pred CCCCCCCCCCeeecCCCCCcc-------------------------cccccCceEEEEecCCCCCCHHHHHHHHhcCCcE
Q 019327 115 PKFKLDDNAPTVSWADPRNAE-------------------------SSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 169 (342)
Q Consensus 115 ~~~~~~~~~i~v~~~~~~~~~-------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 169 (342)
. .+.++.|.|.+....... .......++|||+|||..+++++|+++|++||.|
T Consensus 245 ~--~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 I--IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred e--EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4 778888888654321100 0012235799999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCC
Q 019327 170 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 170 ~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 223 (342)
..+.|+++..++.++|||||+|.+.++|..||+.||+..|.++.|.|.++....
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999998888889999999999999999999999999999999999997543
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.1e-26 Score=209.09 Aligned_cols=130 Identities=25% Similarity=0.445 Sum_probs=118.0
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc------CCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA------KHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~------~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
++|+.|++++|||||+|.++++|++|++.||+..|.+++|+|.++++ +++|||+|||+++||++|+++|++||+
T Consensus 140 ~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 140 MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 46889999999999999999999999999999999999999998753 568999999999999999999999999
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
|+.|+|++| +.++++++||||+|.+.++|++||+.|++..+....+.|.|.++...
T Consensus 220 -V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 220 -IVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred -EEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999 67899999999999999999999999999755445577888877654
No 28
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=196.31 Aligned_cols=177 Identities=23% Similarity=0.418 Sum_probs=160.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||++|+|+++++.|+++|.+||+ |.+|.+++| ..++++++|+||+|++++.+.+++.. ..+.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge-v~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE-VTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc-eeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccc
Confidence 5789999999999999999999999999 999999999 57899999999999999999888654 457899999999
Q ss_pred ecCCCCCcccccc--cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 127 SWADPRNAESSAA--SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
+.+.++....... ...++|||++||.++++++|+++|++||.|.++.++.|+.+..+++|+||+|++++++++++.+
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~- 158 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ- 158 (311)
T ss_pred eeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-
Confidence 9998887654322 2478999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCceeCCcEEEEEeccCCCCCCCCC
Q 019327 205 EKYEIDGQVLDCSLAKPQADQKTSG 229 (342)
Q Consensus 205 ~~~~~~g~~i~v~~a~~~~~~~~~~ 229 (342)
.-+.|+++.+.|..|.|++......
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~~ 183 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQSTK 183 (311)
T ss_pred ceeeecCceeeEeeccchhhccccc
Confidence 7889999999999999998776553
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=193.68 Aligned_cols=155 Identities=23% Similarity=0.441 Sum_probs=142.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
-+|||+|||.++++++|+.+|++||+ |++|.|+++ |+||-.++...|+.|+..|++ +.|++..|.|+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk-VlECDIvKN---------YgFVHiEdktaaedairNLhg--YtLhg~nInVea 70 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK-VLECDIVKN---------YGFVHIEDKTAAEDAIRNLHG--YTLHGVNINVEA 70 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc-eEeeeeecc---------cceEEeecccccHHHHhhccc--ceecceEEEEEe
Confidence 47999999999999999999999999 999999998 999999999999999999998 599999999998
Q ss_pred CCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCce
Q 019327 129 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 208 (342)
++.+. ..+++|+|+||.+.++.++|+..|++||.|.+++|++ +|+||.|+-.++|..|++.||+.+
T Consensus 71 SksKs------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 71 SKSKS------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ccccC------CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 87663 3458999999999999999999999999999999984 599999999999999999999999
Q ss_pred eCCcEEEEEeccCCCCCCCCC
Q 019327 209 IDGQVLDCSLAKPQADQKTSG 229 (342)
Q Consensus 209 ~~g~~i~v~~a~~~~~~~~~~ 229 (342)
|+|++++|.++..+-......
T Consensus 137 ~~gk~m~vq~stsrlrtapgm 157 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAPGM 157 (346)
T ss_pred cccceeeeeeeccccccCCCC
Confidence 999999999998876554443
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=200.67 Aligned_cols=171 Identities=24% Similarity=0.419 Sum_probs=154.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
.+|||++||++++.++|.++|+.+|+ |..|.++.+ ..++.++||+||+|.-.||++.|++.++.+ .+.++.|.|..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGP-ik~~~vVt~-~gs~~~RGfgfVtFam~ED~qrA~~e~~~~--kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGP-IKHAVVVTN-KGSSEKRGFGFVTFAMEEDVQRALAETEQS--KFEGRILNVDP 81 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccC-cceeEEecC-CCcccccCccceeeehHhHHHHHHHHhhcC--cccceeccccc
Confidence 69999999999999999999999999 999999999 678899999999999999999999999886 78899999888
Q ss_pred CCCCCccc---------------c-----c--ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCce
Q 019327 129 ADPRNAES---------------S-----A--ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 186 (342)
Q Consensus 129 ~~~~~~~~---------------~-----~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~ 186 (342)
+..+.... . . +....+|.|.||||.+.+.+|+.+|+.||.|.+|.|++...+.. .||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGF 160 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGF 160 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cce
Confidence 76554321 0 0 11257899999999999999999999999999999998888888 699
Q ss_pred EEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 187 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 187 ~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
|||+|....+|..|++.+|+..|+||+|-|.||.++..
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999999999999999999999999999988764
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=9.5e-26 Score=185.86 Aligned_cols=186 Identities=20% Similarity=0.402 Sum_probs=160.4
Q ss_pred eEEEEeecc------cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 38 KKIKCSAAQ------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 38 ~~i~v~~~~------~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
+.|+|..++ .+++|||+.|.+.-.|||++.+|..||. |++|.+.+. .++.+||||||.|.+..+|+.||..
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~-~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGN-IEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCC-cceeEEecC--CCCCCCCceEEEeccchHHHHHHHH
Confidence 556666544 3579999999999999999999999999 999999998 6899999999999999999999999
Q ss_pred hCCCCCC-CCCCCCeeecCCCCCcccccc---------------------------------------------------
Q 019327 112 MSNPKFK-LDDNAPTVSWADPRNAESSAA--------------------------------------------------- 139 (342)
Q Consensus 112 l~~~~~~-~~~~~i~v~~~~~~~~~~~~~--------------------------------------------------- 139 (342)
|+++... --...+.|+++....+.....
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 9987432 233456777776654431000
Q ss_pred --------------------------------------------------------------------------------
Q 019327 140 -------------------------------------------------------------------------------- 139 (342)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (342)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred -------------------------------------------cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecC
Q 019327 140 -------------------------------------------SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176 (342)
Q Consensus 140 -------------------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~ 176 (342)
....+|||..||.+..+.||.+.|-.||.|++.+|..
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 0048999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCCC
Q 019327 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226 (342)
Q Consensus 177 ~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 226 (342)
|+.|+.||.|+||.|+++.+|+.||..||++.|.-++|+|.+.+|++..+
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999999999999999999999987653
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=185.80 Aligned_cols=214 Identities=25% Similarity=0.421 Sum_probs=177.2
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee-----------------cccCCeEEEcCCCCCCCHHHH
Q 019327 3 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA-----------------AQAKHRLFIGNVPRNWGEDDM 65 (342)
Q Consensus 3 ~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~-----------------~~~~~~l~v~nl~~~~te~~l 65 (342)
|..|++.||||||+|+-.|.|..|++.+|+..+.|+.|+|.. ++.-++|||..+.++.+|+||
T Consensus 148 Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~Di 227 (544)
T KOG0124|consen 148 DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDI 227 (544)
T ss_pred ccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHH
Confidence 678999999999999999999999999999999999999963 234469999999999999999
Q ss_pred HHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc------ccc
Q 019327 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES------SAA 139 (342)
Q Consensus 66 ~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~------~~~ 139 (342)
+..|+.||+ |..|.+-++| ..+.+|||+||||.+..+...|+..||- |.+.|+.++|..+......- +..
T Consensus 228 KSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAiasMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~ 303 (544)
T KOG0124|consen 228 KSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIASMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAI 303 (544)
T ss_pred HHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHhhhcch--hhcccceEecccccCCCchhcCCCCcccC
Confidence 999999999 9999999994 6778999999999999999999999986 68888888776543221110 000
Q ss_pred c-------------------------------------------------------------------------------
Q 019327 140 S------------------------------------------------------------------------------- 140 (342)
Q Consensus 140 ~------------------------------------------------------------------------------- 140 (342)
.
T Consensus 304 P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g 383 (544)
T KOG0124|consen 304 PAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVG 383 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcc
Confidence 0
Q ss_pred -------------------------------------------------------------CceEEEEecC--CCCCC--
Q 019327 141 -------------------------------------------------------------QVKALYVKNL--PKDIT-- 155 (342)
Q Consensus 141 -------------------------------------------------------------~~~~l~v~~l--~~~~~-- 155 (342)
.++.|.++|+ |.+++
T Consensus 384 ~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~ 463 (544)
T KOG0124|consen 384 VVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDED 463 (544)
T ss_pred eechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhH
Confidence 0577888887 55555
Q ss_pred -HHHHHHHHhcCCcEEEEEecCCCCCCCC----CceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 156 -QDRLKELFAHHGKITKVVIPPAKPGQER----SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 156 -~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
+.+|.+.+.+||.|.+|.|...+.+... ----||+|....++.+|+..|++..|.|+++..+...
T Consensus 464 LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 464 LEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhh
Confidence 4689999999999999999887765421 1246999999999999999999999999998876543
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.5e-25 Score=188.74 Aligned_cols=172 Identities=24% Similarity=0.472 Sum_probs=155.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
|+|||+.|.++..|+.|+..|..||+ |++|.+.+| ..++++|+||||||+-+|.|+.|++.||+. .+.|+.|+|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 69999999999999999999999999 999999999 478999999999999999999999999996 89999999986
Q ss_pred CCCCCccc-------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHH
Q 019327 129 ADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201 (342)
Q Consensus 129 ~~~~~~~~-------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 201 (342)
........ .......+|||..+.++++|+||+.+|+.||+|++|.+-++..+..+|||+||+|.+..+...||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 54332211 33445689999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeCCcEEEEEeccCCCC
Q 019327 202 KNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 202 ~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
..||-+.+.|..|+|-.+.....
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred hhcchhhcccceEecccccCCCc
Confidence 99999999999999988765544
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=1e-24 Score=196.84 Aligned_cols=210 Identities=23% Similarity=0.378 Sum_probs=173.6
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc--------------------cCCeEEEcCCCCCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------------------AKHRLFIGNVPRNW 60 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~--------------------~~~~l~v~nl~~~~ 60 (342)
|.|+.++.+||.|||+|.+.++...|+. |+|..+-|..|.|..++ +-..|||+||...+
T Consensus 212 I~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNi 290 (549)
T KOG0147|consen 212 IGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNI 290 (549)
T ss_pred eccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCc
Confidence 5688999999999999999999999995 99999999999997443 22349999999999
Q ss_pred CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccc---
Q 019327 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS--- 137 (342)
Q Consensus 61 te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~--- 137 (342)
+|++|+.+|+.||. |..|.+++| ..+|+++||+||+|.+.++|.+|++.||+ |++-|+.|+|..-........
T Consensus 291 te~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~ 366 (549)
T KOG0147|consen 291 TEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDARKALEQLNG--FELAGRLIKVSVVTERVDTKEAAV 366 (549)
T ss_pred hHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHHHHHHHHhcc--ceecCceEEEEEeeeecccccccc
Confidence 99999999999999 999999999 57999999999999999999999999999 799999998764321111100
Q ss_pred -----------------------------------------------------------------cc-------cCceEE
Q 019327 138 -----------------------------------------------------------------AA-------SQVKAL 145 (342)
Q Consensus 138 -----------------------------------------------------------------~~-------~~~~~l 145 (342)
+. ..+.++
T Consensus 367 ~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~ 446 (549)
T KOG0147|consen 367 TQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCL 446 (549)
T ss_pred cccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHH
Confidence 00 113445
Q ss_pred EEecC--CCCCC--------HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 146 YVKNL--PKDIT--------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 146 ~v~~l--~~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
.+.|+ |...| .|++.+.+.+||.|..|.|.+.. -|+.||.|.+.++|..|+..||+.+|.|+.|.
T Consensus 447 lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-----~g~VYvrc~s~~~A~~a~~alhgrWF~gr~It 521 (549)
T KOG0147|consen 447 LLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-----AGCVYVRCPSAEAAGTAVKALHGRWFAGRMIT 521 (549)
T ss_pred HHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-----CceEEEecCcHHHHHHHHHHHhhhhhccceeE
Confidence 55555 21112 26788888999999999997764 48999999999999999999999999999999
Q ss_pred EEecc
Q 019327 216 CSLAK 220 (342)
Q Consensus 216 v~~a~ 220 (342)
++|-.
T Consensus 522 a~~~~ 526 (549)
T KOG0147|consen 522 AKYLP 526 (549)
T ss_pred EEEee
Confidence 99865
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=200.63 Aligned_cols=210 Identities=23% Similarity=0.361 Sum_probs=175.3
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc---------------------------------------------
Q 019327 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------------------------------------------- 46 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~--------------------------------------------- 46 (342)
-|+|+|.+..+|++|...|....+....+.+.|+.
T Consensus 423 ~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ 502 (725)
T KOG0110|consen 423 GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEE 502 (725)
T ss_pred eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCcccc
Confidence 38999999999999999988776665554443211
Q ss_pred -----------cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeC--CCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 019327 47 -----------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD--PQNANQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 47 -----------~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~--~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
..++|||.||++++|.++|..+|...|. |.+|.|... +.+.-.|.||+||+|.++++|+.|++.|+
T Consensus 503 ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq 581 (725)
T KOG0110|consen 503 SSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ 581 (725)
T ss_pred ccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc
Confidence 0124999999999999999999999999 999888654 22233477999999999999999999999
Q ss_pred CCCCCCCCCCCeeecCCCCCccc-----ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEE
Q 019327 114 NPKFKLDDNAPTVSWADPRNAES-----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 188 (342)
Q Consensus 114 ~~~~~~~~~~i~v~~~~~~~~~~-----~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~f 188 (342)
++ .++++.|.|+++....... ......++|+|.|||...+..+|+++|..||.|.+|+|++......++||||
T Consensus 582 gt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~F 659 (725)
T KOG0110|consen 582 GT--VLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGF 659 (725)
T ss_pred Cc--eecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhcccee
Confidence 86 8999999999988222111 2333367999999999999999999999999999999998855566799999
Q ss_pred EEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 189 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 189 V~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
|+|-+.++|.+|+.+|..+-|.||+|.++||..-..
T Consensus 660 v~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 660 VDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred eeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999999999999986543
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-24 Score=179.39 Aligned_cols=123 Identities=28% Similarity=0.560 Sum_probs=116.7
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc----------------------cCCeEEEcCCCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ----------------------AKHRLFIGNVPR 58 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~----------------------~~~~l~v~nl~~ 58 (342)
|||..|++||||+||-|-+.++|+.|+..|||..|..+.|+..|+. ++++|||+||+.
T Consensus 95 irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~ 174 (321)
T KOG0148|consen 95 IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS 174 (321)
T ss_pred eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCc
Confidence 6899999999999999999999999999999999999999999864 457999999999
Q ss_pred CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCC
Q 019327 59 NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133 (342)
Q Consensus 59 ~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~ 133 (342)
.+||++|++.|++||. |.+|+|.++ +||+||.|++.|+|.+||..+|++ ++.++.++|.|.+...
T Consensus 175 ~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~mNnt--ei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 175 GLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAAAHAIVQMNNT--EIGGQLVRCSWGKEGD 239 (321)
T ss_pred cccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhHHHHHHHhcCc--eeCceEEEEeccccCC
Confidence 9999999999999999 999999999 799999999999999999999997 8999999999998664
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.87 E-value=1.9e-20 Score=164.47 Aligned_cols=109 Identities=27% Similarity=0.489 Sum_probs=96.9
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc-------------------------------------
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------------------------------------- 46 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~------------------------------------- 46 (342)
..+|+++|||.|||+++|.+++|++.||..++.|++|.|....
T Consensus 80 D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~g 159 (608)
T KOG4212|consen 80 DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGG 159 (608)
T ss_pred ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCC
Confidence 3579999999999999999999999999999999999986211
Q ss_pred ------------------------------------------------------cCCeEEEcCCCCCCCHHHHHHHHHhh
Q 019327 47 ------------------------------------------------------AKHRLFIGNVPRNWGEDDMRKAVTKI 72 (342)
Q Consensus 47 ------------------------------------------------------~~~~l~v~nl~~~~te~~l~~~f~~~ 72 (342)
-..++||.||...+....|++.|.-.
T Consensus 160 gG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA 239 (608)
T KOG4212|consen 160 GGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA 239 (608)
T ss_pred CccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc
Confidence 01279999999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 73 G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
|. |+.|.+-.| ..+.++|+|.++|..+-.|-.|+..++..
T Consensus 240 Gk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 240 GK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred ee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhccC
Confidence 99 999999988 56789999999999999999999988853
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.5e-20 Score=145.09 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=130.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
+..++|||+|||.++-+.||+++|.+||. |.+|.|... -..-+||||+|+++.+|+.|+..-++ +.+++..|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~-i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdG--Ydydg~rLR 76 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR-IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDG--YDYDGCRLR 76 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc-eEEEEeccC----CCCCCeeEEEecCccchhhhhhcccc--cccCcceEE
Confidence 45789999999999999999999999999 999999543 34467999999999999999988777 589999999
Q ss_pred eecCCCCCccc----------------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCC
Q 019327 126 VSWADPRNAES----------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 183 (342)
Q Consensus 126 v~~~~~~~~~~----------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~ 183 (342)
|+++..-.... ....+...|.|.+||.+.+|+||+++..+-|.|....+.+|
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------ 150 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------
Confidence 99987543211 22234688999999999999999999999999999999887
Q ss_pred CceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 184 SRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 184 ~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
+++.|+|...|+.+-|+.+|+...+..
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccccccC
Confidence 699999999999999999998765543
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=6.9e-22 Score=178.67 Aligned_cols=175 Identities=22% Similarity=0.447 Sum_probs=151.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..+++|+-.|+..+++.+|.++|+.+|+ |.+|.+|.| +.+++++|.|||+|.+.+.+..|+ .|.+. .+.+.+|.|
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~v 252 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIV 252 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEe
Confidence 3468999999999999999999999999 999999999 899999999999999999999998 56776 677888888
Q ss_pred ecCCCCCcccc----------cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHH
Q 019327 127 SWADPRNAESS----------AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 196 (342)
Q Consensus 127 ~~~~~~~~~~~----------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~ 196 (342)
........... -..+...|||+||..++++++|+.+|+.||.|..|.+.+|.+++.++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 76543322110 01112339999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHhcCCceeCCcEEEEEeccCCCCCC
Q 019327 197 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 226 (342)
Q Consensus 197 a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 226 (342)
|.+|+++||+.+|.|+.|+|.....+....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccc
Confidence 999999999999999999999887665443
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=2.4e-19 Score=160.31 Aligned_cols=167 Identities=17% Similarity=0.266 Sum_probs=134.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
..|.+..|||++|++||.++|+.++ |+.+++.+. +++..|-|||+|+++|++++|+++-.. .+..+-|.|-.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~ 82 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG--IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFT 82 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc--eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEc
Confidence 3577899999999999999999998 899777665 899999999999999999999987443 56777777766
Q ss_pred CCCCCccc-------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEE-EEecCCCCCCCCCceEEEEeCCHHHHHHH
Q 019327 129 ADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKA 200 (342)
Q Consensus 129 ~~~~~~~~-------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~~fV~f~~~~~a~~a 200 (342)
+....... ........|.+.+||+.||++||.+||+-.-.|.. |.++.+.... +.+.|||+|++.+.|+.|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIA 161 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHHH
Confidence 54332211 11134678999999999999999999998755555 4455666555 599999999999999999
Q ss_pred HHhcCCceeCCcEEEEEeccCCCCC
Q 019327 201 LKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 201 ~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
+.. |...|..+.|.|..+...+.+
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHHHH
Confidence 997 777899999999887654433
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.84 E-value=6e-19 Score=157.73 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=154.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc-----------------cCCeEEEcCCCCCCCHHH
Q 019327 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-----------------AKHRLFIGNVPRNWGEDD 64 (342)
Q Consensus 2 ~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~-----------------~~~~l~v~nl~~~~te~~ 64 (342)
..+++|+..|-|||+|.+.|++.+|+| ++...+..+.|.|..+. ....|.+..||+.||++|
T Consensus 41 ~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~d 119 (510)
T KOG4211|consen 41 IPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEED 119 (510)
T ss_pred EeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHH
Confidence 456789999999999999999999998 67788888999986542 345899999999999999
Q ss_pred HHHHHHhhCCCeEE-EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCC------------
Q 019327 65 MRKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP------------ 131 (342)
Q Consensus 65 l~~~f~~~G~~v~~-v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~------------ 131 (342)
|.++|+-.-- |.. |.++.+ ..+++.|-|||+|++.++|++||..... .+..+-|.|..+..
T Consensus 120 I~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~ 193 (510)
T KOG4211|consen 120 IVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESAEIALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDG 193 (510)
T ss_pred HHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHHHHHHHHHHH---hhccceEEeehhHHHHHHhhcccccc
Confidence 9999997764 444 445555 5678999999999999999999976443 23333332221100
Q ss_pred -----------------------CCc-----------------------cc-----------------------------
Q 019327 132 -----------------------RNA-----------------------ES----------------------------- 136 (342)
Q Consensus 132 -----------------------~~~-----------------------~~----------------------------- 136 (342)
+.. ..
T Consensus 194 ~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~ 273 (510)
T KOG4211|consen 194 RVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGD 273 (510)
T ss_pred ccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCccc
Confidence 000 00
Q ss_pred --ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEE
Q 019327 137 --SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214 (342)
Q Consensus 137 --~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 214 (342)
........++..+||...++.+|.++|+..-.+ .|.|.-...+.. .+-|+|+|.|.++|..|+.+ ++..+..+.|
T Consensus 274 ~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~-TGEAdveF~t~edav~Amsk-d~anm~hrYV 350 (510)
T KOG4211|consen 274 YGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRA-TGEADVEFATGEDAVGAMGK-DGANMGHRYV 350 (510)
T ss_pred ccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCcc-CCcceeecccchhhHhhhcc-CCcccCccee
Confidence 000002678899999999999999999876444 555544444444 89999999999999999997 7777788877
Q ss_pred EEEec
Q 019327 215 DCSLA 219 (342)
Q Consensus 215 ~v~~a 219 (342)
.+..-
T Consensus 351 ElFln 355 (510)
T KOG4211|consen 351 ELFLN 355 (510)
T ss_pred eeccc
Confidence 77554
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.82 E-value=4.3e-20 Score=144.44 Aligned_cols=130 Identities=27% Similarity=0.442 Sum_probs=116.7
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc-------cCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-------AKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 2 ~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~-------~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
+|+-|...+|||||+|.++|+|+=|++.||..+|.|+.|+|..+. ...+|||+||.++++|..|.+.|+.||.
T Consensus 43 kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 43 KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccc
Confidence 577788999999999999999999999999999999999998765 2358999999999999999999999998
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
.+..-+++++ ..++.+++|+||.|++.|.+.+|++.++++ .++.+++.|.++..+..
T Consensus 123 l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq--~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 123 LISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQ--YLCNRPITVSYAFKKDT 179 (203)
T ss_pred cccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccc--hhcCCceEEEEEEecCC
Confidence 4455688888 578999999999999999999999999997 78999999999876654
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=6.2e-19 Score=139.52 Aligned_cols=86 Identities=19% Similarity=0.385 Sum_probs=80.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+||++++++++|+++|++||.|+++.|+.|+.+..+++||||+|++.++|++|++.||+..|+++.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34468999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986543
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=2.5e-18 Score=139.94 Aligned_cols=164 Identities=18% Similarity=0.367 Sum_probs=141.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHH----HHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRK----AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~----~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
.+++.+|||.||...+..++|+. +|++||+ |.+|...+ +.+.+|-|||.|++.+.|-.|+..|++. .+-
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~-ildI~a~k----t~KmRGQA~VvFk~~~~As~A~r~l~gf--pFy 78 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGK-ILDISAFK----TPKMRGQAFVVFKETEAASAALRALQGF--PFY 78 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCC-eEEEEecC----CCCccCceEEEecChhHHHHHHHHhcCC--ccc
Confidence 34566999999999999999998 9999999 99988865 4678999999999999999999999984 677
Q ss_pred CCCCeeecCCCCCccc----------------------------------------------ccccCceEEEEecCCCCC
Q 019327 121 DNAPTVSWADPRNAES----------------------------------------------SAASQVKALYVKNLPKDI 154 (342)
Q Consensus 121 ~~~i~v~~~~~~~~~~----------------------------------------------~~~~~~~~l~v~~l~~~~ 154 (342)
++.+++.++......- ....+...||+.|||.++
T Consensus 79 gK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es 158 (221)
T KOG4206|consen 79 GKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSES 158 (221)
T ss_pred CchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcch
Confidence 8999888877553321 113456889999999999
Q ss_pred CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC-CcEEEEEecc
Q 019327 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAK 220 (342)
Q Consensus 155 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~ 220 (342)
+.+.|..+|.+|.-...|+++... ++.|||+|.+...|..|...+.+..|. ...+.|.+++
T Consensus 159 ~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 159 ESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999998865 789999999999999999999988776 7888888775
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.4e-18 Score=157.81 Aligned_cols=212 Identities=21% Similarity=0.408 Sum_probs=167.2
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec-----------------------------ccCCeEEEcC
Q 019327 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA-----------------------------QAKHRLFIGN 55 (342)
Q Consensus 5 ~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~-----------------------------~~~~~l~v~n 55 (342)
..++.+.||||+|.+.++|..|+. +++..+.|..+++... ...+++||++
T Consensus 218 ~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~ 296 (500)
T KOG0120|consen 218 QLNLEKNFAFIEFRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGG 296 (500)
T ss_pred eecccccceeEEecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhcc
Confidence 346789999999999999999997 8888888877666311 1346899999
Q ss_pred CCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc
Q 019327 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 56 l~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~ 135 (342)
||...++.+++++...||. +....++.| ..++-+++|||.+|.++.....|++.||+. .+.++.+.|..+......
T Consensus 297 lp~~l~~~q~~Ell~~fg~-lk~f~lv~d-~~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 297 LPLYLTEDQVKELLDSFGP-LKAFRLVKD-SATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASN 372 (500)
T ss_pred CcCccCHHHHHHHHHhccc-chhheeecc-cccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchh
Confidence 9999999999999999999 999999999 577899999999999999999999999996 777788887776544322
Q ss_pred ccc--------------------ccCceEEEEecC--CCCCC-H-------HHHHHHHhcCCcEEEEEecCC-CC--CCC
Q 019327 136 SSA--------------------ASQVKALYVKNL--PKDIT-Q-------DRLKELFAHHGKITKVVIPPA-KP--GQE 182 (342)
Q Consensus 136 ~~~--------------------~~~~~~l~v~~l--~~~~~-~-------~~l~~~f~~~G~i~~v~i~~~-~~--~~~ 182 (342)
... ...+..|.+.|+ +.++. + |+++..+++||.|.+|.|.++ .. -..
T Consensus 373 ~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~ 452 (500)
T KOG0120|consen 373 ANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVP 452 (500)
T ss_pred ccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCC
Confidence 111 111233333332 11111 1 457777889999999999988 22 223
Q ss_pred CCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 183 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 183 ~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
..|..||+|.+.+++++|.+.|+|.+|.++.|.++|..+
T Consensus 453 G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 453 GTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 468899999999999999999999999999999998754
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=4.9e-18 Score=157.99 Aligned_cols=162 Identities=23% Similarity=0.369 Sum_probs=128.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
+.|+|+|||..+..++|..+|..||+ |..|.+. . .| --++|+|.++.+|.+|++.|.-+ .+...++.+.|
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp-~---~G---~~aiv~fl~p~eAr~Afrklays--r~k~~plyle~ 455 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP-P---GG---TGAIVEFLNPLEARKAFRKLAYS--RFKSAPLYLEW 455 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccc-cceeecC-c---cc---ceeeeeecCccchHHHHHHhchh--hhccCcccccc
Confidence 37999999999999999999999999 9988443 2 11 14999999999999999998875 44455555554
Q ss_pred CCCCCcc-------------------c-------------c-------------cc-cCceEEEEecCCCCCCHHHHHHH
Q 019327 129 ADPRNAE-------------------S-------------S-------------AA-SQVKALYVKNLPKDITQDRLKEL 162 (342)
Q Consensus 129 ~~~~~~~-------------------~-------------~-------------~~-~~~~~l~v~~l~~~~~~~~l~~~ 162 (342)
+...... . . .. ...++|||.||+++++.++|...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 3311111 0 0 00 01234999999999999999999
Q ss_pred HhcCCcEEEEEecCCCCCC---CCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 163 FAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 163 f~~~G~i~~v~i~~~~~~~---~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
|.+.|.|.++.|.+.+... .|.||+||+|.+.++|+.|++.|+++.|+|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999888765432 356999999999999999999999999999999999998
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=1.8e-17 Score=145.92 Aligned_cols=171 Identities=18% Similarity=0.373 Sum_probs=144.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
..+.+||.|||+++.+++|+++|.. .|+ |+.|.|+.| ..++++|||.|||+++|.+++|++.|+. +.+.+++|.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGe-v~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~ 117 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGE-VEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELV 117 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCc-eEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEE
Confidence 3456999999999999999999976 566 999999999 7899999999999999999999999997 589999998
Q ss_pred eecCCCCCccc------------------------------------------c--------------------------
Q 019327 126 VSWADPRNAES------------------------------------------S-------------------------- 137 (342)
Q Consensus 126 v~~~~~~~~~~------------------------------------------~-------------------------- 137 (342)
|+...-..... .
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 87644211000 0
Q ss_pred -------------cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 138 -------------AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 138 -------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
..+...++||.||...+..+.|++.|...|.|+.|.+..|+++.. +++|.++|+.+-+|..||..+
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s-~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNS-RGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccccc-CCeeEEEecchHHHHHHHHhh
Confidence 000147799999999999999999999999999999999999855 999999999999999999999
Q ss_pred CCceeCCcEEEEEeccCCC
Q 019327 205 EKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 205 ~~~~~~g~~i~v~~a~~~~ 223 (342)
+..-+.+++..+.+..-.+
T Consensus 277 ~~~g~~~~~~~~Rl~~~~D 295 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRLDRIPD 295 (608)
T ss_pred ccCCCccccceeecccccc
Confidence 9877788888888755443
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.74 E-value=1.3e-16 Score=139.56 Aligned_cols=198 Identities=17% Similarity=0.213 Sum_probs=159.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEeecc------------------------------------------
Q 019327 11 GYAFVTFRTKELASQAIEELNSCELKG--KKIKCSAAQ------------------------------------------ 46 (342)
Q Consensus 11 G~afV~f~~~e~A~~a~~~~~g~~~~g--~~i~v~~~~------------------------------------------ 46 (342)
=.|.|.|.+.+.|..|.-+|+|..|.. +.++|++++
T Consensus 189 FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~ 268 (492)
T KOG1190|consen 189 FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVP 268 (492)
T ss_pred hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccc
Confidence 358999999999999999999998763 567775321
Q ss_pred ---------------------------cCCeEEEcCCCCC-CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEE
Q 019327 47 ---------------------------AKHRLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIE 98 (342)
Q Consensus 47 ---------------------------~~~~l~v~nl~~~-~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~ 98 (342)
.+..|.|.||..+ +|.+.|..+|.-||+ |..|+|+.+. +--|+|+
T Consensus 269 ~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGd-VqRVkil~nk------kd~ALIQ 341 (492)
T KOG1190|consen 269 AVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGD-VQRVKILYNK------KDNALIQ 341 (492)
T ss_pred cccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcc-eEEEEeeecC------Ccceeee
Confidence 0246788888655 899999999999999 9999999872 2469999
Q ss_pred ecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc-------------------------------ccccCceEEEE
Q 019327 99 YYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-------------------------------SAASQVKALYV 147 (342)
Q Consensus 99 f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~-------------------------------~~~~~~~~l~v 147 (342)
|.+...|+.|++.|++. .+.++.|+|.+++-..... .-..++.+|++
T Consensus 342 msd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHl 419 (492)
T KOG1190|consen 342 MSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHL 419 (492)
T ss_pred ecchhHHHHHHHHhhcc--eecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheee
Confidence 99999999999999985 8889999998876443221 01123678999
Q ss_pred ecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC-cEEEEEeccC
Q 019327 148 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVLDCSLAKP 221 (342)
Q Consensus 148 ~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~a~~ 221 (342)
.|+|.+++||+|+..|.+-|-.++......++ +.++++.+++.|+|..|+..++.+.+.. ..|+|+|++.
T Consensus 420 snip~svsee~lk~~f~~~g~~vkafkff~kd----~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 420 SNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD----RKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCCcccchhHHHHhhhcCCceEEeeeecCCC----cceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999888665443332221 6899999999999999999999988876 5999999874
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=2.4e-17 Score=130.42 Aligned_cols=85 Identities=22% Similarity=0.452 Sum_probs=78.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
....++|||+|||+++||++|+++|++||+ |++|+|+.| ..++++++||||+|++.++|++|++.|++. .++++.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~v~i~~d-~~tg~~kGfaFV~F~~~e~A~~Al~~lng~--~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGD-VVDAKVIVD-RETGRSRGFGFVNFNDEGAATAAISEMDGK--ELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCEEE
Confidence 456789999999999999999999999999 999999999 678999999999999999999999999985 7899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
+|+|+..+.
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999987653
No 50
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.8e-17 Score=135.30 Aligned_cols=151 Identities=22% Similarity=0.383 Sum_probs=126.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
..+||++||+.+.+.+|+.+|..||. |.+|.+.. +|+||+|.+..+|..|+..+++. .+.+..+.++|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~-~~d~~mk~---------gf~fv~fed~rda~Dav~~l~~~--~l~~e~~vve~ 69 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK-IPDADMKN---------GFGFVEFEDPRDADDAVHDLDGK--ELCGERLVVEH 69 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc-cccceeec---------ccceeccCchhhhhcccchhcCc--eecceeeeeec
Confidence 36999999999999999999999999 88887754 58999999999999999999997 55555588888
Q ss_pred CCCCC------cc----------cccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeC
Q 019327 129 ADPRN------AE----------SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 192 (342)
Q Consensus 129 ~~~~~------~~----------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~ 192 (342)
+.... .. .........|.|.+++..+.+++|.++|.++|.++...+. ++++||+|+
T Consensus 70 ~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs 141 (216)
T KOG0106|consen 70 ARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFS 141 (216)
T ss_pred ccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeeh
Confidence 87421 00 0123345789999999999999999999999999655442 789999999
Q ss_pred CHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 193 ERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 193 ~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
+.++|.+|++.|++..+.++.|.+...
T Consensus 142 ~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 142 EQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhhcchhccchhhcCceeeeccc
Confidence 999999999999999999999999443
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=4.5e-16 Score=125.74 Aligned_cols=158 Identities=18% Similarity=0.266 Sum_probs=118.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC-CCCCe
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD-DNAPT 125 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~-~~~i~ 125 (342)
.-++|||.+||.++...||..+|..|-. .+.+.|....+.....+.+|||+|.+..+|..|+..||+-.|... +..+.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~G-YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHG-YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCC-ccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3479999999999999999999999876 666666544244455778999999999999999999999644321 23444
Q ss_pred eecCCCCCccc---------------------------------------------------------------------
Q 019327 126 VSWADPRNAES--------------------------------------------------------------------- 136 (342)
Q Consensus 126 v~~~~~~~~~~--------------------------------------------------------------------- 136 (342)
++.++......
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 54443221110
Q ss_pred -------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHh
Q 019327 137 -------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 137 -------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
.....+.+|||.||..+++|++|+.+|+.|--...++|... .+ ...||++|++.+.|..|+..
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g---~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG---MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC---cceEeecHHHHHHHHHHHHH
Confidence 00000588999999999999999999999987777776432 11 35899999999999999999
Q ss_pred cCCcee
Q 019327 204 TEKYEI 209 (342)
Q Consensus 204 l~~~~~ 209 (342)
|.+..|
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 888655
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.68 E-value=6.3e-16 Score=135.23 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=159.2
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCC--ccCCeEEEEeeccc-------------------------------------
Q 019327 7 GEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKCSAAQA------------------------------------- 47 (342)
Q Consensus 7 g~~~G~afV~f~~~e~A~~a~~~~~g~--~~~g~~i~v~~~~~------------------------------------- 47 (342)
-+-+..|||+|.+.++|...+...... .+.+..|.|.+++.
T Consensus 61 lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~ 140 (492)
T KOG1190|consen 61 LKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVV 140 (492)
T ss_pred eccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhccccccccccccccc
Confidence 345569999999999999955544332 34555555543210
Q ss_pred -------C--CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC
Q 019327 48 -------K--HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118 (342)
Q Consensus 48 -------~--~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 118 (342)
+ =+++|.|+-..++-+-|..+|++||. |..|.-... +.+ =-|+|+|.+.+.|+.|...|+++.+.
T Consensus 141 ~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-VlKIiTF~K--nn~---FQALvQy~d~~sAq~AK~aLdGqnIy 214 (492)
T KOG1190|consen 141 VGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VLKIITFTK--NNG---FQALVQYTDAVSAQAAKLALDGQNIY 214 (492)
T ss_pred ccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eEEEEEEec--ccc---hhhhhhccchhhHHHHHHhccCCccc
Confidence 0 16788999999999999999999999 887655432 222 24999999999999999999998766
Q ss_pred CCCCCCeeecCCCCCccc----------------c------------------------------------------ccc
Q 019327 119 LDDNAPTVSWADPRNAES----------------S------------------------------------------AAS 140 (342)
Q Consensus 119 ~~~~~i~v~~~~~~~~~~----------------~------------------------------------------~~~ 140 (342)
-..+.+++.++.-..... . ...
T Consensus 215 ngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~ 294 (492)
T KOG1190|consen 215 NGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESP 294 (492)
T ss_pred CceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccC
Confidence 666666665543111000 0 000
Q ss_pred -CceEEEEecCCC-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 141 -QVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 141 -~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
.+..|.|.||.. .+|.+.|..+|..||+|.+|+|+..+ +..|+|+|.+...|+.|++.|++..+.|++|+|.+
T Consensus 295 ~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 295 SANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred CCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 136788898855 68999999999999999999999886 57899999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 019327 219 AKPQADQKTS 228 (342)
Q Consensus 219 a~~~~~~~~~ 228 (342)
++...-....
T Consensus 370 SKH~~vqlp~ 379 (492)
T KOG1190|consen 370 SKHTNVQLPR 379 (492)
T ss_pred ccCccccCCC
Confidence 9876554443
No 53
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1.5e-15 Score=130.45 Aligned_cols=168 Identities=19% Similarity=0.307 Sum_probs=137.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeE--------EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI--------SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~--------~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 118 (342)
-++.|||.|||.++|-+++.++|+++|- |. .|+|.++ +.|..+|=|++.|-..++++.|++.|++. .
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGi-I~~d~~t~epk~KlYrd--~~G~lKGDaLc~y~K~ESVeLA~~ilDe~--~ 207 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGI-IMRDPQTGEPKVKLYRD--NQGKLKGDALCCYIKRESVELAIKILDED--E 207 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcce-EeccCCCCCeeEEEEec--CCCCccCceEEEeecccHHHHHHHHhCcc--c
Confidence 3467999999999999999999999997 53 4899998 67999999999999999999999999997 6
Q ss_pred CCCCCCeeecCCCCCccc----------------------------------ccccCceEEEEecCCC----CCC-----
Q 019327 119 LDDNAPTVSWADPRNAES----------------------------------SAASQVKALYVKNLPK----DIT----- 155 (342)
Q Consensus 119 ~~~~~i~v~~~~~~~~~~----------------------------------~~~~~~~~l~v~~l~~----~~~----- 155 (342)
+.++.|+|+.|.-+.... +.....++|.|.|+=. ..+
T Consensus 208 ~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred ccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 679999998876332110 1222357888888832 122
Q ss_pred --HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCC
Q 019327 156 --QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 156 --~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 223 (342)
+++|.+.+++||.|.+|.|..... .|.+-|.|.+.++|+.||+.|+|..|+||.|..++...+.
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hP----dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHP----DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCC----CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 367888899999999999874432 7999999999999999999999999999999998875443
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.68 E-value=7.1e-15 Score=127.28 Aligned_cols=200 Identities=21% Similarity=0.268 Sum_probs=156.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCccC--CeEEEEeecccC----------------------------------------
Q 019327 11 GYAFVTFRTKELASQAIEELNSCELK--GKKIKCSAAQAK---------------------------------------- 48 (342)
Q Consensus 11 G~afV~f~~~e~A~~a~~~~~g~~~~--g~~i~v~~~~~~---------------------------------------- 48 (342)
=.|.|||++.+.|.+|.++|||..|. .+.++|+++++.
T Consensus 160 VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~ 239 (494)
T KOG1456|consen 160 VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLG 239 (494)
T ss_pred eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccC
Confidence 37999999999999999999999776 467888765532
Q ss_pred ------------------------------------------------CeEEEcCCCCC-CCHHHHHHHHHhhCCCeEEE
Q 019327 49 ------------------------------------------------HRLFIGNVPRN-WGEDDMRKAVTKIGPGVISI 79 (342)
Q Consensus 49 ------------------------------------------------~~l~v~nl~~~-~te~~l~~~f~~~G~~v~~v 79 (342)
+.++|-+|... ++-+.|.++|-.||. |+.|
T Consensus 240 ~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rv 318 (494)
T KOG1456|consen 240 YHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERV 318 (494)
T ss_pred CChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeE
Confidence 15888899865 788999999999999 9999
Q ss_pred EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc-----------------------
Q 019327 80 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES----------------------- 136 (342)
Q Consensus 80 ~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~----------------------- 136 (342)
++++.. .+-|.||+.+..+.++|+..|++. .+-+.+|.|..+...-...
T Consensus 319 kFmkTk------~gtamVemgd~~aver~v~hLnn~--~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnR 390 (494)
T KOG1456|consen 319 KFMKTK------PGTAMVEMGDAYAVERAVTHLNNI--PLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNR 390 (494)
T ss_pred EEeecc------cceeEEEcCcHHHHHHHHHHhccC--ccccceEEEeeccccccccCCceecCCCCcchhhcccccccc
Confidence 999972 467999999999999999999986 4566667665544221100
Q ss_pred ----------ccccCceEEEEecCCCCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC
Q 019327 137 ----------SAASQVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 205 (342)
Q Consensus 137 ----------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 205 (342)
.-..++++|+.-|.|..+|||.|.++|..... -++|+|...+... ...+++||++.++|..||..+|
T Consensus 391 Fssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kser--SssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 391 FSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSER--SSSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred cCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccc--cccceeeeehHHHHHHHHHHhc
Confidence 11123688999999999999999999987653 4577887766333 3578999999999999999999
Q ss_pred CceeCCc------EEEEEeccC
Q 019327 206 KYEIDGQ------VLDCSLAKP 221 (342)
Q Consensus 206 ~~~~~g~------~i~v~~a~~ 221 (342)
...|.+. .|++-|+.+
T Consensus 469 H~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 469 HYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred cccccCCCCCCCeeeeeeeccc
Confidence 8888763 445555544
No 55
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=9.3e-17 Score=139.21 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=160.4
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc----------------------CCeEEEcCCCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----------------------KHRLFIGNVPR 58 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~----------------------~~~l~v~nl~~ 58 (342)
+++...|+..|++.|.|.+.|.-+.|++. +...+..+.|.|-.+.. .-.|.+.+||+
T Consensus 93 KOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPf 171 (508)
T KOG1365|consen 93 LCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPF 171 (508)
T ss_pred eeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCC
Confidence 45667899999999999999999999984 44556667777643321 22577789999
Q ss_pred CCCHHHHHHHHHh---hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC---
Q 019327 59 NWGEDDMRKAVTK---IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR--- 132 (342)
Q Consensus 59 ~~te~~l~~~f~~---~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~--- 132 (342)
++++.|+.++|.. .+..++.|-+++. .+|+..|-|||.|..+++|+.|+.+... .+..+-|.+.++...
T Consensus 172 dat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlfa~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvq 246 (508)
T KOG1365|consen 172 DATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLFACEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQ 246 (508)
T ss_pred CcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEecCHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHH
Confidence 9999999999963 2222567777775 5899999999999999999999976443 233333322221100
Q ss_pred -------------------Cc-----ccccccCceEEEEecCCCCCCHHHHHHHHhcCCc-EEE--EEecCCCCCCCCCc
Q 019327 133 -------------------NA-----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-ITK--VVIPPAKPGQERSR 185 (342)
Q Consensus 133 -------------------~~-----~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~--v~i~~~~~~~~~~g 185 (342)
.. .........+|.+++||.+.+.|||.++|..|-. |.. |.++.+.++.. .|
T Consensus 247 qvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SG 325 (508)
T KOG1365|consen 247 QVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRP-SG 325 (508)
T ss_pred HHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCc-Ch
Confidence 00 0012223688999999999999999999998864 333 66666666555 89
Q ss_pred eEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCC
Q 019327 186 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 186 ~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 223 (342)
-|||+|.+.|+|.+|..+.+++....+.|+|.-+...+
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 99999999999999999999888889999998766444
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=7.3e-17 Score=135.23 Aligned_cols=115 Identities=28% Similarity=0.482 Sum_probs=106.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC----CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeC
Q 019327 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84 (342)
Q Consensus 9 ~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~----~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~ 84 (342)
-|.|+||..++...|+.|+..|++-.|+|..|.|+.++++ ++|+|+||.+.++.+||+..|++||+ |.+|+|++|
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygp-viecdivkd 113 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGP-VIECDIVKD 113 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCC-ceeeeeecc
Confidence 3789999999999999999999999999999999877654 78999999999999999999999999 999999988
Q ss_pred CCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc
Q 019327 85 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 85 ~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~ 135 (342)
|+||.|+..++|..|++.|+++ +++|+++.|..+.++...
T Consensus 114 ---------y~fvh~d~~eda~~air~l~~~--~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 114 ---------YAFVHFDRAEDAVEAIRGLDNT--EFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred ---------eeEEEEeeccchHHHHhccccc--ccccceeeeeeecccccc
Confidence 9999999999999999999997 889999999988776543
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.65 E-value=1.2e-16 Score=140.11 Aligned_cols=163 Identities=22% Similarity=0.403 Sum_probs=128.2
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC------------CeEEEcCCCCCCCHHHHHHH
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKA 68 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~------------~~l~v~nl~~~~te~~l~~~ 68 (342)
|+|+.|++++||+||+|.+.+...+++.. ....|.++.|.+..+.+. .+|||+.||.++++++++++
T Consensus 39 m~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~y 117 (311)
T KOG4205|consen 39 MRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDY 117 (311)
T ss_pred eccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhh
Confidence 68999999999999999999999999985 447788999888776544 38999999999999999999
Q ss_pred HHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccccccc-CceEEEE
Q 019327 69 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS-QVKALYV 147 (342)
Q Consensus 69 f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~-~~~~l~v 147 (342)
|++||. |..+.++.| ..+.++++|+||+|.+++++++++.. .-+.++++.+.|..+.++........ .....+.
T Consensus 118 fe~~g~-v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~ 192 (311)
T KOG4205|consen 118 FEQFGK-VADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKG 192 (311)
T ss_pred hhccce-eEeeEEeec-ccccccccceeeEeccccccceeccc---ceeeecCceeeEeeccchhhcccccccccccccc
Confidence 999998 999999999 78999999999999999999998654 44689999999999999865432211 1112222
Q ss_pred ecCCCCCCHHHHHHHHhcCCcE
Q 019327 148 KNLPKDITQDRLKELFAHHGKI 169 (342)
Q Consensus 148 ~~l~~~~~~~~l~~~f~~~G~i 169 (342)
.++....+.-.|..+|.-|+.+
T Consensus 193 ~~~g~~~~~~~l~~~~~g~~~~ 214 (311)
T KOG4205|consen 193 NNLGNGRTGFFLKKYFKGYGPV 214 (311)
T ss_pred ccccccccccccchhccccCcc
Confidence 2344444444455555555544
No 58
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=4e-16 Score=127.44 Aligned_cols=79 Identities=14% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
-++|||++|+|++..++|+++|++||+ |++..|+.| +.+++||||+||+|++.++|.+|++..+- .|+||+..|+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGe-I~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp~p---iIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGE-IVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDPNP---IIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCc-eEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCCCC---cccccccccc
Confidence 368999999999999999999999999 999999999 89999999999999999999999988765 7999999998
Q ss_pred cCCC
Q 019327 128 WADP 131 (342)
Q Consensus 128 ~~~~ 131 (342)
.+.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7754
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=123.90 Aligned_cols=82 Identities=27% Similarity=0.499 Sum_probs=75.5
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
+...++|||++|+|.+..|+|+++|++||+|++..|+.|+.+++||||+||+|.+.++|.+|++.- +..|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 334589999999999999999999999999999999999999999999999999999999999974 4589999999998
Q ss_pred ccC
Q 019327 219 AKP 221 (342)
Q Consensus 219 a~~ 221 (342)
|--
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 854
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.4e-15 Score=124.71 Aligned_cols=83 Identities=30% Similarity=0.509 Sum_probs=80.1
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
....+|.|.||+.++++++|+++|.+||.|.+|.|.+|+.++.+||||||+|.+.++|++||..||+.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019327 220 KPQ 222 (342)
Q Consensus 220 ~~~ 222 (342)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.6e-15 Score=104.25 Aligned_cols=70 Identities=33% Similarity=0.626 Sum_probs=65.4
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 145 l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
|||+|||.++++++|+++|++||.|..+.+..+ ....++++|||+|++.++|++|++.|++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 4455589999999999999999999999999999885
No 62
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.61 E-value=1.7e-13 Score=118.87 Aligned_cols=167 Identities=18% Similarity=0.227 Sum_probs=135.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.-.|.|.+|-..++|.||.+.++.||. |.-+.++.. +..|.|+|++.+.|+.++.......+.+.++..-+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~-i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGP-IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCc-eEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 4457999999999999999999999999 888887765 45799999999999999887666677888988888
Q ss_pred ecCCCCCccc---ccccCceEEEEe--cCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHH
Q 019327 127 SWADPRNAES---SAASQVKALYVK--NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201 (342)
Q Consensus 127 ~~~~~~~~~~---~~~~~~~~l~v~--~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 201 (342)
+++.++.... ......+.|.+. |--..+|-+-|..++...|+|.+|.|++.. ---|.|||++.+.|++|.
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAK 176 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHH
Confidence 8876554332 222334555544 444578999999999999999999999762 347999999999999999
Q ss_pred HhcCCceeC--CcEEEEEeccCCCCCC
Q 019327 202 KNTEKYEID--GQVLDCSLAKPQADQK 226 (342)
Q Consensus 202 ~~l~~~~~~--g~~i~v~~a~~~~~~~ 226 (342)
..||+..|. ...|+|+||+|..-+-
T Consensus 177 ~alNGADIYsGCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 177 AALNGADIYSGCCTLKIEYAKPTRLNV 203 (494)
T ss_pred hhcccccccccceeEEEEecCcceeee
Confidence 999998775 4899999999876443
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.7e-15 Score=121.63 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=77.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|.|.||+.+++|++|+++|.+||. |..|.|.+| +++|.+||||||.|.+.++|++||+.|++. -.+.--|+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~-i~rvylard-K~TG~~kGFAFVtF~sRddA~rAI~~LnG~--gyd~LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGP-ITRVYLARD-KETGLSKGFAFVTFESRDDAARAIADLNGY--GYDNLILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCc-cceeEEEEc-cccCcccceEEEEEecHHHHHHHHHHccCc--ccceEEEEE
Confidence 4578999999999999999999999999 999999999 899999999999999999999999999985 677788899
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
+|+.|+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999886
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=9.4e-15 Score=121.21 Aligned_cols=82 Identities=26% Similarity=0.509 Sum_probs=76.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
|+|||-.||.+..+.||.+.|-.||. |++.+|..| +.++.||.|+||.|+++.+|+.||..||+ |.|.-++++|..
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGh-ivSaKVFvD-RATNQSKCFGFVSfDNp~SaQaAIqAMNG--FQIGMKRLKVQL 361 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGH-IVSAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQAMNG--FQIGMKRLKVQL 361 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccc-eeeeeeeeh-hccccccceeeEecCCchhHHHHHHHhcc--hhhhhhhhhhhh
Confidence 38999999999999999999999999 999999999 88999999999999999999999999998 689999999988
Q ss_pred CCCCCc
Q 019327 129 ADPRNA 134 (342)
Q Consensus 129 ~~~~~~ 134 (342)
..++..
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 877754
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=8.5e-15 Score=108.16 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=80.2
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
...+.+|||+||+..++||+|.++|+++|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++.+++..++++.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
...-.+
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 865544
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=107.16 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=76.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
+.+++|||+||+..++||+|.++|+++|+ |..|.+=.| +.+..+.|||||+|-+.++|+.|++-+++. .++.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~-irriiMGLd-r~kktpCGFCFVeyy~~~dA~~Alryisgt--rLddr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGD-IRRIIMGLD-RFKKTPCGFCFVEYYSRDDAEDALRYISGT--RLDDRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccc-hheeEeccc-cCCcCccceEEEEEecchhHHHHHHHhccC--ccccccee
Confidence 34789999999999999999999999999 999999888 788899999999999999999999999996 88999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
+.|...-
T Consensus 110 ~D~D~GF 116 (153)
T KOG0121|consen 110 IDWDAGF 116 (153)
T ss_pred eeccccc
Confidence 9886543
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.2e-14 Score=123.97 Aligned_cols=88 Identities=23% Similarity=0.375 Sum_probs=78.7
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|+|+|||....|-||+..|++||.|.+|.|+.+..+ ||||+||+|++.++|++|-++||+..|.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3344699999999999999999999999999999999987644 37999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 019327 218 LAKPQADQKT 227 (342)
Q Consensus 218 ~a~~~~~~~~ 227 (342)
.|..+...++
T Consensus 170 ~ATarV~n~K 179 (376)
T KOG0125|consen 170 NATARVHNKK 179 (376)
T ss_pred ccchhhccCC
Confidence 9987754443
No 68
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=8e-15 Score=101.73 Aligned_cols=69 Identities=23% Similarity=0.586 Sum_probs=63.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
|||+|||+++|+++|+++|++||. |..+.++.+ ..+.++++|||+|.+.++|++|++.+++. .+.++.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~-i~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l~g~--~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGK-IESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEELNGK--KINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTST-EEEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhh-ccccccccc--ccccccceEEEEEcCHHHHHHHHHHcCCC--EECccCc
Confidence 799999999999999999999999 999999997 67889999999999999999999999985 6666654
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.5e-14 Score=112.41 Aligned_cols=77 Identities=26% Similarity=0.535 Sum_probs=69.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
.+.+|||+|||.++.+.+|+++|-+||.|.+|.|..... ...||||+|++..+|+.||..-++..+++..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 458999999999999999999999999999998854421 14699999999999999999999999999999999976
No 70
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=8.4e-14 Score=123.39 Aligned_cols=151 Identities=31% Similarity=0.572 Sum_probs=119.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
.++|||+|||.++|+++|+++|.+||. |..|.+..+ ..++.++|||||+|.+.++|..|++.+++. .+.++.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~-~~~~~~~~d-~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~--~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGP-VKRVRLVRD-RETGKSRGFAFVEFESEESAEKAIEELNGK--ELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCc-eeEEEeeec-cccCccCceEEEEecCHHHHHHHHHHcCCC--eECCceeEee
Confidence 489999999999999999999999999 999999999 578999999999999999999999999975 8899999999
Q ss_pred cCCC----CCccc----------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceE
Q 019327 128 WADP----RNAES----------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187 (342)
Q Consensus 128 ~~~~----~~~~~----------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~ 187 (342)
+... ..... ........+++.+++..++..++...|..++.+..+.+.............
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (306)
T COG0724 191 KAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRS 270 (306)
T ss_pred ccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCccccccc
Confidence 8542 21111 122336889999999999999999999999999877777665544333344
Q ss_pred EEEeCCHHHHHHHHH
Q 019327 188 FVHFAERSSAMKALK 202 (342)
Q Consensus 188 fV~f~~~~~a~~a~~ 202 (342)
++.+.....+.....
T Consensus 271 ~~~~~~~~~~~~~~~ 285 (306)
T COG0724 271 FVGNEASKDALESNS 285 (306)
T ss_pred ccchhHHHhhhhhhc
Confidence 444444444444433
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=116.54 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=77.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
....|.|.||..-++.++|+.+|++||.|.+|.|..|..|..++|||||.|.+..+|+.|+++|++..|+|+.|.|.+|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 019327 221 P 221 (342)
Q Consensus 221 ~ 221 (342)
=
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.6e-14 Score=98.55 Aligned_cols=70 Identities=31% Similarity=0.572 Sum_probs=64.1
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 145 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 145 l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
|||+|||+++++++|.++|+.||.|..+.+..++. +.++++|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 66699999999999999999999999999999875
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4.1e-14 Score=119.29 Aligned_cols=87 Identities=20% Similarity=0.394 Sum_probs=81.4
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
....+.+||||..|+.+++|.+|+..|+.||.|+.|.|++|+.+++++|||||+|++..+..+|.+..++..|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 44466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
.+-..+.
T Consensus 176 DvERgRT 182 (335)
T KOG0113|consen 176 DVERGRT 182 (335)
T ss_pred Eeccccc
Confidence 9976544
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.4e-14 Score=119.07 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=71.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
.++|||+||++.+++++|+++|+.||.|++|.|+.+.. +++||||+|++.++|+.||. ||+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998864 37899999999999999996 899999999999999874
Q ss_pred C
Q 019327 222 Q 222 (342)
Q Consensus 222 ~ 222 (342)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 75
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.1e-15 Score=117.22 Aligned_cols=105 Identities=18% Similarity=0.372 Sum_probs=87.4
Q ss_pred HHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceE
Q 019327 108 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187 (342)
Q Consensus 108 a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~ 187 (342)
-++.||..++.+.... .++|..... .+.-|||+|||.++||.||.-+|++||+|++|.+++|+.|++|+|||
T Consensus 9 ~i~~lne~Elq~g~~~-~~SWH~~Yk-------dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 9 NIQKLNERELQLGIAD-KKSWHQEYK-------DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred HHHHhhHHhhcccccc-ccchhhhcc-------cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 3455555433332222 455554332 35889999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 188 fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
|+.|++..+...|+..||+..|.||.|+|....
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 999999999999999999999999999998764
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.3e-14 Score=109.81 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=72.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
.++|||+||+..+++.||+.+|..||.|.+|-|-..+ .+||||+|++..+|+.|+..|++..|+|..|+|++..-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5899999999999999999999999999999887754 79999999999999999999999999999999999876
Q ss_pred CCC
Q 019327 222 QAD 224 (342)
Q Consensus 222 ~~~ 224 (342)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 543
No 77
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.2e-14 Score=115.73 Aligned_cols=87 Identities=31% Similarity=0.526 Sum_probs=82.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||++|..+++|.-|...|-+||.|++|.++.|-+++++|+|+||+|+..|+|.+||..||..+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 019327 221 PQADQKT 227 (342)
Q Consensus 221 ~~~~~~~ 227 (342)
|..-+..
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8765443
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.7e-14 Score=109.65 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=72.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
-+++|||+||+..+++.||+.+|..||+ |.+|+|-++ +.|||||||+++.||+.|+..|+++ .|++..|.|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~-lrsvWvArn------PPGfAFVEFed~RDA~DAvr~LDG~--~~cG~r~rV 79 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGP-LRSVWVARN------PPGFAFVEFEDPRDAEDAVRYLDGK--DICGSRIRV 79 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCc-ceeEEEeec------CCCceEEeccCcccHHHHHhhcCCc--cccCceEEE
Confidence 4689999999999999999999999999 999999887 3689999999999999999999998 889999999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
+.+.....
T Consensus 80 E~S~G~~r 87 (195)
T KOG0107|consen 80 ELSTGRPR 87 (195)
T ss_pred EeecCCcc
Confidence 98876643
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=118.04 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=76.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|+|.|||+..-|.||+..|++||. |.+|+||.+ ..-||||+||+|++++||++|.++|+++ .+.||.|.|
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~-VldVEIIfN---ERGSKGFGFVTmen~~dadRARa~LHgt--~VEGRkIEV 168 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGK-VLDVEIIFN---ERGSKGFGFVTMENPADADRARAELHGT--VVEGRKIEV 168 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCc-eeeEEEEec---cCCCCccceEEecChhhHHHHHHHhhcc--eeeceEEEE
Confidence 3479999999999999999999999999 999999997 4458999999999999999999999998 889999999
Q ss_pred ecCCCCCcc
Q 019327 127 SWADPRNAE 135 (342)
Q Consensus 127 ~~~~~~~~~ 135 (342)
+.+..+...
T Consensus 169 n~ATarV~n 177 (376)
T KOG0125|consen 169 NNATARVHN 177 (376)
T ss_pred eccchhhcc
Confidence 998877543
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=4.5e-13 Score=95.30 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=74.7
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
..++.|||.|||.++|.|+..++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|++.|++..+.++.|.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 34588999999999999999999999999999999887765 899999999999999999999999999999999988
Q ss_pred cCCC
Q 019327 220 KPQA 223 (342)
Q Consensus 220 ~~~~ 223 (342)
++..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 7654
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.7e-13 Score=114.83 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
.++|||+|||+.+||++|+++|+.||+ |++|.|+.+. .+++||||+|.++++|+.|+. |++. .+.++.|.|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~-I~~V~I~~d~----~~~GfAFVtF~d~eaAe~All-LnG~--~l~gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGD-IEYVEMQSEN----ERSQIAYVTFKDPQGAETALL-LSGA--TIVDQSVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeecC----CCCCEEEEEeCcHHHHHHHHH-hcCC--eeCCceEEEE
Confidence 478999999999999999999999999 9999999882 257899999999999999995 8876 7899999999
Q ss_pred cCCCCC
Q 019327 128 WADPRN 133 (342)
Q Consensus 128 ~~~~~~ 133 (342)
++....
T Consensus 76 ~a~~~~ 81 (260)
T PLN03120 76 PAEDYQ 81 (260)
T ss_pred eccCCC
Confidence 987543
No 82
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=2.6e-13 Score=101.23 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=80.6
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.+.....|||.++....++++|.+.|..||+|+.+.+..|+.++..+|||+|+|++.++|++|+..+|+..|.+..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 33446889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
|+-.+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9865543
No 83
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=1.6e-13 Score=95.26 Aligned_cols=69 Identities=29% Similarity=0.613 Sum_probs=60.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
|||+|||+++++++|+++|+.+|. |..+.+..+ +. +.++++|||+|.++++|.+|++.+++. .++++.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~-v~~v~~~~~-~~-~~~~~~a~v~f~~~~~a~~al~~~~~~--~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGP-VEKVRLIKN-KD-GQSRGFAFVEFSSEEDAKRALELLNGK--EIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSB-EEEEEEEES-TT-SSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEee-ec-cccCCEEEEEeCCHHHHHHHHHHCCCc--EECCEEc
Confidence 799999999999999999999998 999999998 44 889999999999999999999998853 6666654
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=9.3e-13 Score=91.25 Aligned_cols=72 Identities=35% Similarity=0.609 Sum_probs=66.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 144 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
+|+|.|||..+++++|+++|.+||.|..+.+..+. ..++++|||+|.+.++|++|++.+++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 4458999999999999999999999999999998874
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=6.3e-13 Score=119.25 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.4
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCH--HHHHHHHHhcCCceeCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER--SSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~--~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
....+|||+||++.+++++|..+|+.||.|.+|.|++. ++ |+||||+|.+. +++.+||..||+..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34589999999999999999999999999999999944 34 89999999987 78999999999999999999999
Q ss_pred eccCC
Q 019327 218 LAKPQ 222 (342)
Q Consensus 218 ~a~~~ 222 (342)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99865
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.7e-13 Score=112.98 Aligned_cols=83 Identities=25% Similarity=0.439 Sum_probs=77.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
++-+||||+-|+.+++|.+|+..|+.||+ |+.|.|++| +.+++++|||||+|+++.+...|.+..++. .|+++.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~-IkrirlV~d-~vTgkskGYAFIeye~erdm~~AYK~adG~--~Idgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGP-IKRIRLVRD-KVTGKSKGYAFIEYEHERDMKAAYKDADGI--KIDGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCc-ceeEEEeee-cccCCccceEEEEeccHHHHHHHHHhccCc--eecCcEEE
Confidence 45689999999999999999999999999 999999999 899999999999999999999999999875 89999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
|.+....
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 8876554
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=108.63 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=70.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
...+|||+||++.+|+++|+++|+.||+|.+|+|+++..+ +++|||+|+++++|+.|+. |++..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999999998433 5799999999999999996 89999999999998876
Q ss_pred CC
Q 019327 221 PQ 222 (342)
Q Consensus 221 ~~ 222 (342)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.3e-12 Score=90.15 Aligned_cols=71 Identities=37% Similarity=0.586 Sum_probs=66.1
Q ss_pred EecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 147 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 147 v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
|.|||..+++++|+++|++||.|..+.+..++.+..++++|||+|.+.++|.+|++.+++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999888777779999999999999999999999999999998874
No 89
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.5e-12 Score=113.48 Aligned_cols=153 Identities=17% Similarity=0.363 Sum_probs=113.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEee--CCCCCCCCce---EEEEEecCHHHHHHHHHHhCCC--C--CCC
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK--DPQNANQNRG---FAFIEYYNHACAEYSRQKMSNP--K--FKL 119 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~--~~~~~g~~~g---~afV~f~~~~~a~~a~~~l~~~--~--~~~ 119 (342)
++|||+.||++++|++|...|..||. + .|.... ..+..-.++| |+|+.|+++..++..+.+.... . |.+
T Consensus 260 ~KVFvGGlp~dise~~i~~~F~~FGs-~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQINASFGQFGS-V-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred cceeecCCCccccHHHHHhhcccccc-e-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 68999999999999999999999997 3 333331 1112223566 9999999999999888765431 0 111
Q ss_pred -----CCCCCeee-cCCCC----CcccccccCceEEEEecCCCCCCHHHHHHHHh-cCCcEEEEEecCCCCCCCCCceEE
Q 019327 120 -----DDNAPTVS-WADPR----NAESSAASQVKALYVKNLPKDITQDRLKELFA-HHGKITKVVIPPAKPGQERSRYGF 188 (342)
Q Consensus 120 -----~~~~i~v~-~~~~~----~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~~f 188 (342)
..+.+.|. |-... ..........+||||++||.-++.++|..+|+ .||.|+.+-|-.|.+-..++|-+-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 11212111 11111 01113445579999999999999999999998 799999999999977777799999
Q ss_pred EEeCCHHHHHHHHHh
Q 019327 189 VHFAERSSAMKALKN 203 (342)
Q Consensus 189 V~f~~~~~a~~a~~~ 203 (342)
|+|.+..+-.+||++
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999999999986
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.9e-13 Score=108.57 Aligned_cols=88 Identities=23% Similarity=0.397 Sum_probs=82.5
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
.++.+++|||++|..++||.-|...|-+||. |.+|.+..| ..+.++++|+||+|...|||..||..|++. ++.++.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGD-I~dIqiPlD-yesqkHRgFgFVefe~aEDAaaAiDNMnes--EL~Grt 81 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGD-IKDIQIPLD-YESQKHRGFGFVEFEEAEDAAAAIDNMNES--ELFGRT 81 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccc-hhhcccccc-hhcccccceeEEEeeccchhHHHhhcCchh--hhccee
Confidence 4667899999999999999999999999999 999999999 789999999999999999999999999997 889999
Q ss_pred CeeecCCCCCcc
Q 019327 124 PTVSWADPRNAE 135 (342)
Q Consensus 124 i~v~~~~~~~~~ 135 (342)
|+|+++.|....
T Consensus 82 irVN~AkP~kik 93 (298)
T KOG0111|consen 82 IRVNLAKPEKIK 93 (298)
T ss_pred EEEeecCCcccc
Confidence 999999988654
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=6.5e-12 Score=87.42 Aligned_cols=74 Identities=35% Similarity=0.605 Sum_probs=68.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 144 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
+|+|.|||..+++++|+++|+.||.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.++.|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988766 4489999999999999999999999999999999874
No 92
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.36 E-value=3.7e-11 Score=113.49 Aligned_cols=108 Identities=29% Similarity=0.430 Sum_probs=86.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..+||||+.|+..++|+||.++|+.||+ |.+|.++.. ++||||.+....+|++|+.+|++ +.+..+.|+|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGe-iqSi~li~~-------R~cAfI~M~~RqdA~kalqkl~n--~kv~~k~Iki 489 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGE-IQSIILIPP-------RGCAFIKMVRRQDAEKALQKLSN--VKVADKTIKI 489 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhccc-ceeEeeccC-------CceeEEEEeehhHHHHHHHHHhc--ccccceeeEE
Confidence 3469999999999999999999999999 999999876 89999999999999999999996 6899999999
Q ss_pred ecCCCCCcccc-cccCceEEEEecCCCCCCHHHHHHHHh
Q 019327 127 SWADPRNAESS-AASQVKALYVKNLPKDITQDRLKELFA 164 (342)
Q Consensus 127 ~~~~~~~~~~~-~~~~~~~l~v~~l~~~~~~~~l~~~f~ 164 (342)
.|+........ .......|=|.-|||.--.++|+.+++
T Consensus 490 ~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 490 AWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 99987765430 111123344556677655555666654
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=8.9e-14 Score=109.10 Aligned_cols=102 Identities=24% Similarity=0.437 Sum_probs=84.2
Q ss_pred HHHHHhCCCccC-CeEEEEeec---ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEec
Q 019327 25 QAIEELNSCELK-GKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 100 (342)
Q Consensus 25 ~a~~~~~g~~~~-g~~i~v~~~---~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~ 100 (342)
+-++.||..++. |-.=+.+|. +.+..|||++||.+.||-||.-.|++||+ |+.|.|++| +.+|+|+||||+.|+
T Consensus 8 k~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe-~vdinLiRD-k~TGKSKGFaFLcYE 85 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGE-IVDINLIRD-KKTGKSKGFAFLCYE 85 (219)
T ss_pred HHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCc-eEEEEEEec-CCCCcccceEEEEec
Confidence 334445544442 222245554 35679999999999999999999999999 999999999 899999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCeeecCC
Q 019327 101 NHACAEYSRQKMSNPKFKLDDNAPTVSWAD 130 (342)
Q Consensus 101 ~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~ 130 (342)
+..+...|+..||+ +.|.++.|+|.-..
T Consensus 86 DQRSTILAVDN~NG--iki~gRtirVDHv~ 113 (219)
T KOG0126|consen 86 DQRSTILAVDNLNG--IKILGRTIRVDHVS 113 (219)
T ss_pred CccceEEEEeccCC--ceecceeEEeeecc
Confidence 99999999999998 58999999987543
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=2.6e-12 Score=115.32 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCH--HHHHHHHHHhCCCCCCCCCCCCe
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~--~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.-+|||+||+++++++||+.+|..||. |..|.|++. +| ||||||+|.+. +++.+|++.|++. .+.|+.|+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGs-VkdVEIpRE---TG--RGFAFVEMssdddaEeeKAISaLNGA--EWKGR~LK 81 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGT-VDAVEFVRT---KG--RSFAYIDFSPSSTNSLTKLFSTYNGC--VWKGGRLR 81 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEecc---cC--CceEEEEecCCcHHHHHHHHHHhcCC--eecCceeE
Confidence 358999999999999999999999999 999999965 55 89999999987 7899999999997 88999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
|+.+.+.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9988765
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=4.7e-12 Score=105.58 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
-.+|||+||++.+|+++|+++|+.||+ |.+|+|++| +.++++|||+|+++++|+.|+ .|++. .|.++.|.|.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~-I~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lLnGa--~l~d~~I~It 76 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGA-IEHVEIIRS----GEYACTAYVTFKDAYALETAV-LLSGA--TIVDQRVCIT 76 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCC-eEEEEEecC----CCcceEEEEEECCHHHHHHHH-hcCCC--eeCCceEEEE
Confidence 358999999999999999999999999 999999987 345689999999999999999 57776 7788888887
Q ss_pred cCC
Q 019327 128 WAD 130 (342)
Q Consensus 128 ~~~ 130 (342)
...
T Consensus 77 ~~~ 79 (243)
T PLN03121 77 RWG 79 (243)
T ss_pred eCc
Confidence 644
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=6.2e-12 Score=87.04 Aligned_cols=71 Identities=32% Similarity=0.641 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+|+|.|||..+++++|+++|++||+ |..+.+..++ +.++++|||+|.+.++|++|++.+++. .+.++.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~-v~~~~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~~~~~--~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGP-IESVKIPKDT---GKSKGFAFVEFESEEDAEKAIEALNGT--KLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCC-EEEEEEecCC---CCCCceEEEEeCCHHHHHHHHHHhCCc--EECCEEEee
Confidence 5899999999999999999999999 9999999872 678899999999999999999999874 566776655
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=1.9e-12 Score=103.70 Aligned_cols=81 Identities=27% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
...|.|-||...++.++|+.+|++||. |-+|.|.+| ..+..++|||||.|....+|+.|+++|++. .++++.|.|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~-vgDVyIPrd-r~Tr~sRgFaFVrf~~k~daedA~damDG~--~ldgRelrVq 88 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGR-VGDVYIPRD-RYTRQSRGFAFVRFHDKRDAEDALDAMDGA--VLDGRELRVQ 88 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCc-ccceecccc-cccccccceeEEEeeecchHHHHHHhhcce--eeccceeeeh
Confidence 457999999999999999999999999 999999999 789999999999999999999999999996 8999999888
Q ss_pred cCCCC
Q 019327 128 WADPR 132 (342)
Q Consensus 128 ~~~~~ 132 (342)
.+.-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 76533
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=6.4e-12 Score=89.50 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=70.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
-++-|||.|||+++|.+++.++|.+||. |..|+|-. +...+|-|||.|++..+|.+|++.|++ +.++++.+.|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~-IrQIRiG~----~k~TrGTAFVVYedi~dAk~A~dhlsg--~n~~~ryl~v 89 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGT-IRQIRIGN----TKETRGTAFVVYEDIFDAKKACDHLSG--YNVDNRYLVV 89 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccc-eEEEEecC----ccCcCceEEEEehHhhhHHHHHHHhcc--cccCCceEEE
Confidence 3578999999999999999999999999 99999954 445689999999999999999999998 4889999988
Q ss_pred ecCCCCC
Q 019327 127 SWADPRN 133 (342)
Q Consensus 127 ~~~~~~~ 133 (342)
-+-.+..
T Consensus 90 lyyq~~~ 96 (124)
T KOG0114|consen 90 LYYQPED 96 (124)
T ss_pred EecCHHH
Confidence 8776654
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=9.5e-12 Score=82.12 Aligned_cols=56 Identities=32% Similarity=0.512 Sum_probs=51.7
Q ss_pred HHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 159 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 159 l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
|.++|++||+|.++.+...+ +++|||+|.+.++|++|++.||+..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998874 489999999999999999999999999999999986
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.32 E-value=1.3e-11 Score=100.23 Aligned_cols=100 Identities=21% Similarity=0.353 Sum_probs=83.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCccC---CeEEEEeecccC--------------------------------------
Q 019327 10 KGYAFVTFRTKELASQAIEELNSCELK---GKKIKCSAAQAK-------------------------------------- 48 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~~~~---g~~i~v~~~~~~-------------------------------------- 48 (342)
+-+|||+|.+..+|..|+++|||..++ +..++|+.++++
T Consensus 77 ~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~ 156 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEG 156 (284)
T ss_pred cceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhcccc
Confidence 479999999999999999999999886 567777644322
Q ss_pred ------------------------------------------------------CeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 49 ------------------------------------------------------HRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 49 ------------------------------------------------------~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
.+|||.||..++||++|+.+|+.|-.
T Consensus 157 l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g 236 (284)
T KOG1457|consen 157 LSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG 236 (284)
T ss_pred ccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC
Confidence 18999999999999999999999987
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
...++|... .| ...|||+|++.+.|..||..|++.
T Consensus 237 -f~~l~~~~~---~g--~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 237 -FHILKIRAR---GG--MPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred -ceEEEEecC---CC--cceEeecHHHHHHHHHHHHHhhcc
Confidence 666665321 22 458999999999999999998885
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=1.1e-11 Score=85.47 Aligned_cols=70 Identities=30% Similarity=0.615 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 53 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 53 v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
|+|||..+++++|+++|++||. |..+.+..+ ..++.++++|||+|.+.++|..|++.+++. .++++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~-v~~~~i~~~-~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~--~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGK-IESVRLVRD-KDTGKSKGFAFVEFESEEDAEKALEALNGK--ELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCC-EeEEEEEeC-CCCCCCCceEEEEeCCHHHHHHHHHHcCCC--eeCCcEEEe
Confidence 5799999999999999999999 999999988 456889999999999999999999999864 567777665
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.4e-12 Score=115.92 Aligned_cols=168 Identities=19% Similarity=0.336 Sum_probs=133.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhh-----------CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKI-----------GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~-----------G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
....++|++++..++++.+..+|..- |+.+..+.+-.. +.|||++|.+.++|..|+...-
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~-------~nfa~ie~~s~~~at~~~~~~~-- 244 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE-------KNFAFIEFRSISEATEAMALDG-- 244 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc-------ccceeEEecCCCchhhhhcccc--
Confidence 45789999999999999999999764 454555555443 6799999999999999875432
Q ss_pred CCCCCCCCCeeecCCCCCc-------------------ccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecC
Q 019327 116 KFKLDDNAPTVSWADPRNA-------------------ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 176 (342)
Q Consensus 116 ~~~~~~~~i~v~~~~~~~~-------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~ 176 (342)
..+.+..+++........ .........+|||++||..+++++++++...||.+....++.
T Consensus 245 -~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~ 323 (500)
T KOG0120|consen 245 -IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVK 323 (500)
T ss_pred -hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeec
Confidence 234444444332221111 012223468899999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 177 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 177 ~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
+..++.+++|||.+|.+......|+..||+..+.++.|.|..|.....
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 999888899999999999999999999999999999999999876543
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.8e-12 Score=95.06 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=75.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
.|||.++..++||++|.+.|..||+ |+.|.|-.| ..+|-.+|||+|+|++.+.|++|++.+|+. .+.++.|.|.|+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGe-iKNihLNLD-RRtGy~KGYaLvEYet~keAq~A~~~~Ng~--~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGE-IKNIHLNLD-RRTGYVKGYALVEYETLKEAQAAIDALNGA--ELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhccc-ccceeeccc-cccccccceeeeehHhHHHHHHHHHhccch--hhhCCceeEEEE
Confidence 6999999999999999999999999 999999999 789999999999999999999999999986 788999999998
Q ss_pred CCCCc
Q 019327 130 DPRNA 134 (342)
Q Consensus 130 ~~~~~ 134 (342)
-.+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 76543
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=5.7e-12 Score=115.59 Aligned_cols=82 Identities=20% Similarity=0.432 Sum_probs=79.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
..|||+|+|.++++++|.++|+..|.|.+++++.|+++++++||+|++|.+.++|+.|++.||+.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CC
Q 019327 223 AD 224 (342)
Q Consensus 223 ~~ 224 (342)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.5e-11 Score=85.01 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=54.4
Q ss_pred HHHHHHHHh----cCCcEEEEE-ecCCCCC--CCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 156 QDRLKELFA----HHGKITKVV-IPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 156 ~~~l~~~f~----~~G~i~~v~-i~~~~~~--~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
+++|+++|+ +||.|.+|. |+.++.+ ..++|++||+|.+.++|.+|++.||+..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 6666555 6779999999999999999999999999999999873
No 106
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=108.28 Aligned_cols=80 Identities=31% Similarity=0.564 Sum_probs=76.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
..+|||+|||.++++++|.++|.+||.|..+.+..++.+..++++|||+|.+.++|..|++.+++..|.++.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988888899999999999999999999999999999999999754
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=5.2e-11 Score=82.80 Aligned_cols=74 Identities=31% Similarity=0.614 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
+|+|++||+.+++++|+++|+.+|. |..+.+..++ ...++++|||+|.+.++|..|++.+++. .++++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~-i~~~~~~~~~--~~~~~~~~~v~f~s~~~a~~a~~~~~~~--~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGK-VESVRIVRDK--DTKSKGFAFVEFEDEEDAEKALEALNGK--ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCC-EEEEEEeeCC--CCCcceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEeC
Confidence 4899999999999999999999999 9999999873 3367899999999999999999999985 47787777653
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.23 E-value=8.6e-11 Score=96.22 Aligned_cols=118 Identities=24% Similarity=0.395 Sum_probs=99.1
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc-------------------------------------
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------------------------------------- 46 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~------------------------------------- 46 (342)
..|.+.+|.|||.|++.+.|..|+.+|+|.-+.|+.++|.+++
T Consensus 46 ~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~ 125 (221)
T KOG4206|consen 46 FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGH 125 (221)
T ss_pred cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCccccccc
Confidence 3578999999999999999999999999999999998886543
Q ss_pred -------------------cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHH
Q 019327 47 -------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107 (342)
Q Consensus 47 -------------------~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~ 107 (342)
++..||+.|||.+++.+.|..+|.+|.. -.+|+++.. -++.|||+|.+...|..
T Consensus 126 ~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g-~keir~i~~------~~~iAfve~~~d~~a~~ 198 (221)
T KOG4206|consen 126 FYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPG-FKEIRLIPP------RSGIAFVEFLSDRQASA 198 (221)
T ss_pred ccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcc-cceeEeccC------CCceeEEecchhhhhHH
Confidence 2246899999999999999999999998 899999876 25799999999999999
Q ss_pred HHHHhCCCCCCCCCCCCeeecC
Q 019327 108 SRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 108 a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
|...+++-.+.- ...+.+.++
T Consensus 199 a~~~lq~~~it~-~~~m~i~~a 219 (221)
T KOG4206|consen 199 AQQALQGFKITK-KNTMQITFA 219 (221)
T ss_pred Hhhhhccceecc-CceEEeccc
Confidence 999988753332 555555544
No 109
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=2.3e-11 Score=111.69 Aligned_cols=82 Identities=26% Similarity=0.556 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
+.|||+|||++++|++|.++|+..|. |.+++++.| ..+|+++||+|++|.+.++|..|++.|++. ++.++.|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~-v~s~~~v~D-~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~--~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGP-VLSFRLVYD-RETGKPKGFGFCEFTDEETAERAIRNLNGA--EFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCc-cceeeeccc-ccCCCcCceeeEecCchhhHHHHHHhcCCc--ccCCceEEeec
Confidence 78999999999999999999999999 999999999 799999999999999999999999999986 89999999999
Q ss_pred CCCCCc
Q 019327 129 ADPRNA 134 (342)
Q Consensus 129 ~~~~~~ 134 (342)
+.....
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 876544
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=6.1e-12 Score=101.76 Aligned_cols=143 Identities=20% Similarity=0.354 Sum_probs=116.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
+...++|||.|+...++|+-|.++|-+.|+ |..|.|..+ .++..+ ||||+|+++-.+..|++.+|+. .+-+..+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGP-V~kv~ip~~--~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~--~l~~~e~ 79 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGP-VYKVGIPSG--QDQEQK-FAYVFFPNENSVQLAGQLENGD--DLEEDEE 79 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCc-eEEEeCCCC--ccCCCc-eeeeecccccchhhhhhhcccc--hhccchh
Confidence 455789999999999999999999999999 999999876 566677 9999999999999999999985 6666666
Q ss_pred eeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 125 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
.+..-...... -|...++++.+...|+.-+.+..+++..+.++.. +.+.|+++....+.-.++...
T Consensus 80 q~~~r~G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rn-rn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 80 QRTLRCGNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRN-RNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred hcccccCCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCc-cCccchhhhhhhcCcHHhhhh
Confidence 66543322110 1555788999999999999999999999887444 889999998888877777765
Q ss_pred CCc
Q 019327 205 EKY 207 (342)
Q Consensus 205 ~~~ 207 (342)
.+.
T Consensus 146 ~~l 148 (267)
T KOG4454|consen 146 QGL 148 (267)
T ss_pred ccc
Confidence 543
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.8e-11 Score=103.71 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=80.2
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
.+.+.|||-.|.+.+++++|.-+|+.||.|.+|.|++|..++.+-.||||+|++.+++++|.-+|++..|++++|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34699999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019327 220 KPQAD 224 (342)
Q Consensus 220 ~~~~~ 224 (342)
+....
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 87654
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.4e-11 Score=103.36 Aligned_cols=93 Identities=22% Similarity=0.405 Sum_probs=82.3
Q ss_pred CeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCC
Q 019327 37 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116 (342)
Q Consensus 37 g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 116 (342)
|..-..+.+-+.+.|||+.|.+-+|++||.-+|+.||. |.+|.|++| ..+|.+..||||+|++.+++++|.-+|++
T Consensus 228 GDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~-i~sceVIRD-~ktgdsLqyaFiEFen~escE~AyFKMdN-- 303 (479)
T KOG0415|consen 228 GDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGK-IVSCEVIRD-RKTGDSLQYAFIEFENKESCEQAYFKMDN-- 303 (479)
T ss_pred cCCcccccCCCcceEEEEecCCcccccchhhHHhhccc-ceeeeEEec-ccccchhheeeeeecchhhHHHHHhhhcc--
Confidence 33333344557889999999999999999999999999 999999999 89999999999999999999999999998
Q ss_pred CCCCCCCCeeecCCCCC
Q 019327 117 FKLDDNAPTVSWADPRN 133 (342)
Q Consensus 117 ~~~~~~~i~v~~~~~~~ 133 (342)
+.|+++.|.|.++.+..
T Consensus 304 vLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 304 VLIDDRRIHVDFSQSVS 320 (479)
T ss_pred eeeccceEEeehhhhhh
Confidence 48999999999887653
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=2.7e-12 Score=122.34 Aligned_cols=188 Identities=16% Similarity=0.235 Sum_probs=155.6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC----------------CeEEEcCCCCCCCHHHHHHHHHhhCCC
Q 019327 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK----------------HRLFIGNVPRNWGEDDMRKAVTKIGPG 75 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~----------------~~l~v~nl~~~~te~~l~~~f~~~G~~ 75 (342)
+.++.+....++..|.. ..+..+.++.+.+..+++. .++||.||+..+.+++|...|..++.
T Consensus 616 ~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~- 693 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT- 693 (881)
T ss_pred hhhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-
Confidence 78889999999988887 5667777777766544322 47999999999999999999999997
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCC
Q 019327 76 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 155 (342)
Q Consensus 76 v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 155 (342)
+..+.+... .+.++.+|+|||+|..++++.+|+...... +.+ ...|+|.|+|...|
T Consensus 694 ~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~---~~g--------------------K~~v~i~g~pf~gt 749 (881)
T KOG0128|consen 694 IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAAVAFRDSC---FFG--------------------KISVAISGPPFQGT 749 (881)
T ss_pred hhhHHHHHH-hhccccccceeeEeecCCchhhhhhhhhhh---hhh--------------------hhhhheeCCCCCCc
Confidence 776666533 578899999999999999999999876553 112 26789999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCCC
Q 019327 156 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226 (342)
Q Consensus 156 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 226 (342)
.++|+.++..+|.++++.++..+.+.. +|.++|.|.++.++.+++...+...+..+.+.|..+.|...+.
T Consensus 750 ~e~~k~l~~~~gn~~~~~~vt~r~gkp-kg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 750 KEELKSLASKTGNVTSLRLVTVRAGKP-KGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred hHHHHhhccccCCccccchhhhhcccc-ccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 999999999999999999887776555 9999999999999999999888888888888888877744433
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.15 E-value=2.3e-10 Score=106.83 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=65.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
.+.|-+.|+|.+++-+||.+||.-|-.+-.-.+++-.+.+..+|.|.|-|++.++|.+|...|+++.|..++|.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 46899999999999999999999997665433334444455599999999999999999999999999999998865
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=2e-10 Score=79.42 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=52.3
Q ss_pred HHHHHHHHH----hhCCCeEEEE-EeeCCCCC--CCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 62 EDDMRKAVT----KIGPGVISIE-LVKDPQNA--NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 62 e~~l~~~f~----~~G~~v~~v~-~~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+++|+++|+ .||. |.+|. ++.+ ..+ +.++||+||+|.+.++|.+|++.|++. .+.++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~-v~~v~~v~~~-~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~--~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGE-VGKINKIYID-NVGYENHKRGNVYITFERSEDAARAIVDLNGR--YFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCC-eeEEEEEEeC-CCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEe
Confidence 678999998 9999 99995 6665 344 889999999999999999999999996 777887765
No 116
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.11 E-value=7.7e-11 Score=97.60 Aligned_cols=168 Identities=13% Similarity=0.204 Sum_probs=128.7
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 50 RLFIGNVPRNWGEDD-M--RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 50 ~l~v~nl~~~~te~~-l--~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
.++++++-..+..+- | ...|+.+-. +...+++++ ..+..++++|+.|+....-.++-..-+.+ ++....|++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~-L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~ 172 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPS-LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRL 172 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchh-hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccc--cccCcceee
Confidence 567777777776665 3 667777666 777777777 56677899999998777766665444433 444444554
Q ss_pred ecCCCCCcc--cccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 127 SWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 127 ~~~~~~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
.....-.+. ........+||.+.|..+++++.|...|.+|-.....++++|+.++++++|+||.|.+.+++..|+..|
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 433322211 133445689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeCCcEEEEEeccCC
Q 019327 205 EKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 205 ~~~~~~g~~i~v~~a~~~ 222 (342)
++..++.+.|++....-+
T Consensus 253 ~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccccccchhHhhhhhHH
Confidence 999999999887655433
No 117
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.11 E-value=6.4e-10 Score=101.60 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=70.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
..|||.|||.++++++|+++|..||.|+...|..-....+...|+||+|++.++++.||++ +...|++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 5599999999999999999999999999887776554444348999999999999999997 688999999999998775
Q ss_pred CCC
Q 019327 223 ADQ 225 (342)
Q Consensus 223 ~~~ 225 (342)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 544
No 118
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=98.62 Aligned_cols=79 Identities=27% Similarity=0.507 Sum_probs=71.6
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc-CCceeCCcEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLD 215 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~ 215 (342)
.++...++|||++|.+.++|.+|+++|.+||+|.++.++.. +++|||+|.+.++|+.|.+++ |...|+|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 45556799999999999999999999999999999999887 689999999999999998774 56688999999
Q ss_pred EEeccC
Q 019327 216 CSLAKP 221 (342)
Q Consensus 216 v~~a~~ 221 (342)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999998
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=5e-09 Score=99.41 Aligned_cols=79 Identities=23% Similarity=0.494 Sum_probs=74.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
++||||+.|+.++++.||.++|+.||+|.+|.++.. ++||||++....+|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 799999999999999999999999999999999887 89999999999999999999999999999999999986
Q ss_pred CCCCC
Q 019327 222 QADQK 226 (342)
Q Consensus 222 ~~~~~ 226 (342)
+..+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65433
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.10 E-value=1.4e-10 Score=101.86 Aligned_cols=173 Identities=18% Similarity=0.300 Sum_probs=139.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..+++|++++.+.+.+.++..++...|. +..+.+... .....++++++|.|+..+.+..|+...... .+....+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~-~~~~~~S~~-~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~--~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGL-RVDARSSSL-EDSLSSKGGLSVHFAGKSQFFAALEESGSK--VLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcC-cccchhhhh-ccccccccceeeccccHHHHHHHHHhhhcc--ccccccccC
Confidence 3568999999999999999999999998 777777665 567889999999999999999999865542 333333333
Q ss_pred ecCCCCCcc------cccccCceEEE-EecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHH
Q 019327 127 SWADPRNAE------SSAASQVKALY-VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199 (342)
Q Consensus 127 ~~~~~~~~~------~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~ 199 (342)
......... ........++| |.+|+.++++++|+.+|..++.|..+++..+..+...+++++|+|.+...+..
T Consensus 163 dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~ 242 (285)
T KOG4210|consen 163 DLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKL 242 (285)
T ss_pred cccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHH
Confidence 222222110 12223345566 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeCCcEEEEEeccCCCC
Q 019327 200 ALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 200 a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
++.. ....+.++.+.+.+..+...
T Consensus 243 ~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 243 ALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred Hhhc-ccCcccCcccccccCCCCcc
Confidence 9997 78889999999999887654
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=8.5e-11 Score=112.82 Aligned_cols=163 Identities=19% Similarity=0.338 Sum_probs=133.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
...+++||++||+..+++.+|+..|..+|. |.+|.|.+. ..++-.-|+||.|.+...+-.|...+....+. .-.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gk-ve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~--~g~~ 443 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGK-VEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIG--NGTH 443 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhcc-ccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccc--cCcc
Confidence 345679999999999999999999999999 999998765 34455669999999999999998888775332 2233
Q ss_pred eeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 125 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
.+.+..+ .....+.+++++|..++....|...|..||.|..|.+-+. .-|++|.|++...|+.|+..|
T Consensus 444 r~glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 444 RIGLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ccccccc------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHH
Confidence 3433332 2233589999999999999999999999999999888655 469999999999999999999
Q ss_pred CCceeCC--cEEEEEeccCCCC
Q 019327 205 EKYEIDG--QVLDCSLAKPQAD 224 (342)
Q Consensus 205 ~~~~~~g--~~i~v~~a~~~~~ 224 (342)
.+..|.+ +.|.|.|+.+...
T Consensus 512 rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hcCcCCCCCcccccccccCCCC
Confidence 9999986 7899999986543
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=3.3e-10 Score=74.64 Aligned_cols=56 Identities=29% Similarity=0.508 Sum_probs=49.4
Q ss_pred HHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 65 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 65 l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
|+++|++||+ |.++.+..+ . +++|||+|.+.++|++|++.|++. .+.++.|+|+|+
T Consensus 1 L~~~f~~fG~-V~~i~~~~~--~----~~~a~V~f~~~~~A~~a~~~l~~~--~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGE-VKKIKIFKK--K----RGFAFVEFASVEDAQKAIEQLNGR--QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS--EEEEEEETT--S----TTEEEEEESSHHHHHHHHHHHTTS--EETTEEEEEEEE
T ss_pred ChHHhCCccc-EEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEC
Confidence 6899999999 999999876 1 589999999999999999999986 679999999875
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=4.8e-10 Score=92.96 Aligned_cols=122 Identities=13% Similarity=0.270 Sum_probs=104.8
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE------------eecccCCeEEEcCCCCCCCHHHHHHHHHh
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTK 71 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v------------~~~~~~~~l~v~nl~~~~te~~l~~~f~~ 71 (342)
.+-+...+++|+.|+....-.++...-+++++.-..|++ +|.+.+-+||.+.|..+++++-|-..|.+
T Consensus 134 ~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~K 213 (290)
T KOG0226|consen 134 DRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK 213 (290)
T ss_pred cCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHh
Confidence 345678899999999888888888777777776665665 35667789999999999999999999999
Q ss_pred hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 72 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 72 ~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
|-. -...++++| +.+++++||+||.|.+++++..|+++|++. .++.+.|++.-+
T Consensus 214 fps-f~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem~gk--yVgsrpiklRkS 267 (290)
T KOG0226|consen 214 FPS-FQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREMNGK--YVGSRPIKLRKS 267 (290)
T ss_pred ccc-hhhcccccc-ccccccccceeeeecCHHHHHHHHHhhccc--ccccchhHhhhh
Confidence 988 888899999 799999999999999999999999999997 788888876543
No 124
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.5e-10 Score=95.71 Aligned_cols=109 Identities=25% Similarity=0.419 Sum_probs=93.3
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------------------------CCeEEEcCCCCCCC
Q 019327 8 EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------------------------KHRLFIGNVPRNWG 61 (342)
Q Consensus 8 ~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------------------------~~~l~v~nl~~~~t 61 (342)
...||+||+|.+..+|..|+..+|+..|.+-.+.++++.. .+.|.|.+++..+.
T Consensus 33 mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~ 112 (216)
T KOG0106|consen 33 MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVS 112 (216)
T ss_pred eecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhh
Confidence 4568999999999999999999999999988777776652 24799999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 62 e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
+++|.++|..+|. ++...+. .+++||+|++.++|..|++.|++. .+.++.|.+..
T Consensus 113 ~qdl~d~~~~~g~-~~~~~~~---------~~~~~v~Fs~~~da~ra~~~l~~~--~~~~~~l~~~~ 167 (216)
T KOG0106|consen 113 WQDLKDHFRPAGE-VTYVDAR---------RNFAFVEFSEQEDAKRALEKLDGK--KLNGRRISVEK 167 (216)
T ss_pred HHHHhhhhcccCC-Cchhhhh---------ccccceeehhhhhhhhcchhccch--hhcCceeeecc
Confidence 9999999999998 6444332 458999999999999999999986 78888888843
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=5.2e-10 Score=96.73 Aligned_cols=75 Identities=25% Similarity=0.479 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
-.+|||++|-..++|.+|+++|.+||+ |++|.++.. +++|||+|.+.+.|+.|.+++-. .+.|+|..|.|.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGe-irsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGE-IRSIRILPR-------KGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKIK 298 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCC-eeeEEeecc-------cccceeeehhhHHHHHHHHhhcc-eeeecceEEEEE
Confidence 368999999999999999999999999 999999876 56999999999999999988776 578999999999
Q ss_pred cCCC
Q 019327 128 WADP 131 (342)
Q Consensus 128 ~~~~ 131 (342)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9998
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.94 E-value=3.7e-09 Score=85.33 Aligned_cols=84 Identities=20% Similarity=0.436 Sum_probs=76.6
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcC-CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
......++|..+|..+.+.+|..+|.+| |.|..+++.+.+.|+.|++||||+|++.+.|.-|.+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445789999999999999999999988 788888998999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 019327 218 LAKPQ 222 (342)
Q Consensus 218 ~a~~~ 222 (342)
+-.|-
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87655
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=3.6e-09 Score=85.38 Aligned_cols=83 Identities=17% Similarity=0.414 Sum_probs=73.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
...-++|..+|..+.+.+|..+|.+|+..|+.+++-++ +.+|.|+|||||+|++++.|.-|-+.||+ +.+.++.+.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn-krTGNSKgYAFVEFEs~eVA~IaAETMNN--YLl~e~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN-KRTGNSKGYAFVEFESEEVAKIAAETMNN--YLLMEHLLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc-cccCCcCceEEEEeccHHHHHHHHHHhhh--hhhhhheeee
Confidence 34579999999999999999999999443888888899 89999999999999999999999999998 4778888888
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
.+..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 877665
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=3.7e-09 Score=96.94 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=74.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
.++|||.+|...+...+|+.+|++||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||+.|+.++|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58899999999999999999999999999999998866655589999999999999999999999999999999999873
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=89.19 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=116.5
Q ss_pred eecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 43 ~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
..++++..|....|||..++.+|..+|+-.-- ..-...+.. ...++-.+++.|.|.++|.-+.|++... +.+..+
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~i-a~gg~aKOG-~~qgrRnge~lvrf~d~e~RdlalkRhk---hh~g~r 129 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNI-ANGGRALCL-NAQGRRNGEALVRFVDPEGRDLALKRHK---HHMGTR 129 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhc-cccceeeee-hhhhccccceEEEecCchhhhhhhHhhh---hhccCC
Confidence 34555667888999999999999999986432 222222222 3456667899999999999999988644 366777
Q ss_pred CCeeecCCCCCccc------------ccccCceEEEEecCCCCCCHHHHHHHHhcCC----cEEEEEecCCCCCCCCCce
Q 019327 123 APTVSWADPRNAES------------SAASQVKALYVKNLPKDITQDRLKELFAHHG----KITKVVIPPAKPGQERSRY 186 (342)
Q Consensus 123 ~i~v~~~~~~~~~~------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~ 186 (342)
.|.|-.+....-.. ......-.|.+++||.++++.++.++|.+.. ..+.|-+++..++.. .|-
T Consensus 130 yievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrp-TGd 208 (508)
T KOG1365|consen 130 YIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRP-TGD 208 (508)
T ss_pred ceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCc-ccc
Confidence 77775554432110 1112235677899999999999999997433 334555555444444 899
Q ss_pred EEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 187 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 187 ~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
|||.|..+++|+.|+.+ |...+.-|.|++..
T Consensus 209 AFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 209 AFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 99999999999999987 54455555555543
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=5.5e-10 Score=98.77 Aligned_cols=155 Identities=17% Similarity=0.292 Sum_probs=125.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
+++||+||.+.++..||+.+|...--....-.+++ .+|+||.+.+...|.+|++.++++ ..+.|+.+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--------cceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 47999999999999999999976422122223333 379999999999999999999985 789999999988
Q ss_pred CCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecC-CCCCCCCCceEEEEeCCHHHHHHHHHhcCCc
Q 019327 129 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP-AKPGQERSRYGFVHFAERSSAMKALKNTEKY 207 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~-~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~ 207 (342)
+.++... ++++-|.|+|....++.|..+..+||.++.+..+. +.+ .-..-|+|.+.+.+..||.+|++.
T Consensus 73 sv~kkqr------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 73 SVPKKQR------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hhhHHHH------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcch
Confidence 7766432 46799999999999999999999999999886533 322 233458899999999999999999
Q ss_pred eeCCcEEEEEeccCC
Q 019327 208 EIDGQVLDCSLAKPQ 222 (342)
Q Consensus 208 ~~~g~~i~v~~a~~~ 222 (342)
.+....++|.|-...
T Consensus 143 Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhhhcccCchh
Confidence 999999999986543
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=1.2e-08 Score=93.55 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
.++|||.+|+..+-..||+++|++||+ |+-.+|+.+ ..+.-.++|+||++.+.++|.+||+.|+.+ .++++.|.|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGK-VvGAKVVTN-aRsPGaRCYGfVTMSts~eAtkCI~hLHrT--ELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGK-VVGAKVVTN-ARSPGARCYGFVTMSTSAEATKCIEHLHRT--ELHGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcc-eeceeeeec-CCCCCcceeEEEEecchHHHHHHHHHhhhh--hhcceeeeee
Confidence 368999999999999999999999999 999999999 455557899999999999999999999987 8899999998
Q ss_pred cCCCC
Q 019327 128 WADPR 132 (342)
Q Consensus 128 ~~~~~ 132 (342)
.+...
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 87643
No 132
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.76 E-value=1.1e-07 Score=82.57 Aligned_cols=120 Identities=24% Similarity=0.354 Sum_probs=98.9
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc--------------------------------------
Q 019327 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-------------------------------------- 46 (342)
Q Consensus 5 ~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~-------------------------------------- 46 (342)
+.|+.||=|.+.|-..|+...|++.|++..|.|++|+|+.++
T Consensus 178 ~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~ 257 (382)
T KOG1548|consen 178 NQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRD 257 (382)
T ss_pred CCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCcc
Confidence 348999999999999999999999999999999999997332
Q ss_pred ------cCCeEEEcCCCC----CCC-------HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH
Q 019327 47 ------AKHRLFIGNVPR----NWG-------EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109 (342)
Q Consensus 47 ------~~~~l~v~nl~~----~~t-------e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 109 (342)
..++|.|.|+=. ..+ +++|++-.++||. |.+|.|.-. .+.|.+-|.|.+.++|..|+
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~-v~~vvv~d~-----hPdGvvtV~f~n~eeA~~ci 331 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQ-VRKVVVYDR-----HPDGVVTVSFRNNEEADQCI 331 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCC-cceEEEecc-----CCCceeEEEeCChHHHHHHH
Confidence 335888888732 233 4566677889999 999888643 45789999999999999999
Q ss_pred HHhCCCCCCCCCCCCeeecCCCC
Q 019327 110 QKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 110 ~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
+.|+++ .++++.|..+....+
T Consensus 332 q~m~GR--~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 332 QTMDGR--WFDGRQLTASIWDGK 352 (382)
T ss_pred HHhcCe--eecceEEEEEEeCCc
Confidence 999998 789999888765544
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=4.3e-08 Score=83.15 Aligned_cols=83 Identities=25% Similarity=0.426 Sum_probs=75.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
..+|+|.||+..++++||+++|++|+.++.+.|..++.+.+ .+.|-|.|...++|.+|++.+++..++|+.+++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 48899999999999999999999999999998888877666 89999999999999999999999999999999998876
Q ss_pred CCCC
Q 019327 222 QADQ 225 (342)
Q Consensus 222 ~~~~ 225 (342)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5543
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.7e-08 Score=92.83 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=108.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|+|-|||..+++++|+++|+.||+ |.+|+..+. .++.+||+|-|..+|+.|+++|+.. ++.++.+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGe-ir~ir~t~~------~~~~~~v~FyDvR~A~~Alk~l~~~--~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGE-IREIRETPN------KRGIVFVEFYDVRDAERALKALNRR--EIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcc-hhhhhcccc------cCceEEEEEeehHhHHHHHHHHHHH--Hhhhhhhc
Confidence 35679999999999999999999999999 999766544 5789999999999999999999986 67777776
Q ss_pred eecCCCCCccc------------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceE
Q 019327 126 VSWADPRNAES------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 187 (342)
Q Consensus 126 v~~~~~~~~~~------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~ 187 (342)
........... ...-....++. .|++..+...++..++-+|.+.. +..... +.--
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-----~hq~ 216 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLL-----NHQR 216 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccch-----hhhh
Confidence 33222111100 00001122332 28887777666667777776654 222111 2355
Q ss_pred EEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 188 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 188 fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
|++|.+..++..+.... +..+.+....+.++.+
T Consensus 217 ~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 78888888886666543 6666676666666654
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=6.4e-08 Score=82.10 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=73.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
-.++|+|.|||..++++||+++|+.|+. ++.+-|-.+ ..|.+.|.|-|.|...+||..|++.+++ +.++++.+.+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~-~~r~~vhy~--~~G~s~Gta~v~~~r~~DA~~avk~~~g--v~ldG~~mk~ 156 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGE-LKRVAVHYD--RAGRSLGTADVSFNRRDDAERAVKKYNG--VALDGRPMKI 156 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhcc-ceEEeeccC--CCCCCCccceeeecchHhHHHHHHHhcC--cccCCceeee
Confidence 3478999999999999999999999997 999888887 7899999999999999999999999998 6899999888
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
....+.
T Consensus 157 ~~i~~~ 162 (243)
T KOG0533|consen 157 EIISSP 162 (243)
T ss_pred EEecCc
Confidence 766544
No 136
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.60 E-value=1.6e-07 Score=82.17 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=79.7
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEE--------EEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~ 210 (342)
.....+|||.+|+..+++++|.++|.+++.|. .|.|.++++|..+|+-|.|+|++...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44568999999999999999999999999886 4788899999999999999999999999999999999999
Q ss_pred CcEEEEEeccCCCCC
Q 019327 211 GQVLDCSLAKPQADQ 225 (342)
Q Consensus 211 g~~i~v~~a~~~~~~ 225 (342)
+..|+|.+|..+...
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999877653
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.8e-08 Score=80.81 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=71.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
.++|||.|+...++|+.|.++|-+-|.|..|.|..+++... + ||||.|+++-+..-|++-+|+..+.+..|.|.+-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 48999999999999999999999999999999999988776 5 99999999999999999999999999888887754
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=80.73 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=78.8
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
........+||+|+...+|.+++..+|+.||.|..+.|..|+....+++|+||+|.+.+.++.++. ||+..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445567999999999999999999999999999999999999988789999999999999999999 9999999999999
Q ss_pred EeccCC
Q 019327 217 SLAKPQ 222 (342)
Q Consensus 217 ~~a~~~ 222 (342)
++.+-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998755
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=8.4e-08 Score=88.34 Aligned_cols=74 Identities=30% Similarity=0.454 Sum_probs=66.4
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
..+....+|+|-|||.++++++|+.+|+.||+|..|+--..+ ++.+||+|-|..+|++|++.|+..++.++.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445567999999999999999999999999999996554443 79999999999999999999999999999888
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=9e-07 Score=64.29 Aligned_cols=80 Identities=24% Similarity=0.376 Sum_probs=69.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcC--CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC----CcEEEE
Q 019327 143 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID----GQVLDC 216 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~----g~~i~v 216 (342)
++|.|+|||...|.++|.+++.+. |...-+.++-|..+..+.|||||.|.+.+.|.+-.+.+++..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998653 56777888889888888999999999999999999999998765 477888
Q ss_pred EeccCC
Q 019327 217 SLAKPQ 222 (342)
Q Consensus 217 ~~a~~~ 222 (342)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888754
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.49 E-value=2.1e-07 Score=85.27 Aligned_cols=78 Identities=17% Similarity=0.336 Sum_probs=64.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
.+|||+|||.++++++|+++|+.||+ |++..|..- ...++..+|+||+|.+.++++.|+++. ++.++++.+.|+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~-Ik~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGP-IKEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVEE 363 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhccc-ccccceEEe-ccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEEe
Confidence 46999999999999999999999999 999888664 123444499999999999999999875 5688888888875
Q ss_pred CCC
Q 019327 129 ADP 131 (342)
Q Consensus 129 ~~~ 131 (342)
-.+
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 443
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.47 E-value=1.5e-06 Score=60.05 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=48.8
Q ss_pred eEEEEecCCCCCCHHH----HHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 143 KALYVKNLPKDITQDR----LKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~----l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
..|+|.|||.+.+... |++++..+| .|..|. .+.|+|.|.+.+.|.+|.+.|++..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999888655 566666776 676662 4789999999999999999999999999999999
Q ss_pred eccCC
Q 019327 218 LAKPQ 222 (342)
Q Consensus 218 ~a~~~ 222 (342)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98543
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.46 E-value=1.7e-06 Score=62.88 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh--CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCC--CCCC
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKI--GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL--DDNA 123 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~--G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~--~~~~ 123 (342)
+++|.|.|||...|.++|.+++... |. ..-+.+..| ..++.+.|||||.|.++++|.+..+.+++..+.. ..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~-yDF~YLPiD-f~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGK-YDFFYLPID-FKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCc-ceEEEeeee-ccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 3689999999999999999999764 44 666778788 5778899999999999999999999999874432 2333
Q ss_pred CeeecCCC
Q 019327 124 PTVSWADP 131 (342)
Q Consensus 124 i~v~~~~~ 131 (342)
..|.||.-
T Consensus 79 c~i~yAri 86 (97)
T PF04059_consen 79 CEISYARI 86 (97)
T ss_pred EEEehhHh
Confidence 44555543
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.45 E-value=2.8e-07 Score=81.14 Aligned_cols=127 Identities=21% Similarity=0.329 Sum_probs=101.3
Q ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee----------------cccCCeEE-EcCCCCCCCHHHH
Q 019327 3 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA----------------AQAKHRLF-IGNVPRNWGEDDM 65 (342)
Q Consensus 3 ~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~----------------~~~~~~l~-v~nl~~~~te~~l 65 (342)
+.....++|+++|.|...+.+..|+...-...+.++.+.... .....++| |++|+..+++++|
T Consensus 123 ~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~ 202 (285)
T KOG4210|consen 123 LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDL 202 (285)
T ss_pred hccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHH
Confidence 345678999999999999999999985332344444433321 12234566 9999999999999
Q ss_pred HHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 66 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 66 ~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
+.+|..++. |..+++..+ ..++.+++|+||.|.....+..++.. +. ..+.++++.+....+...
T Consensus 203 ~~~~~~~~~-i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 203 KEHFVSSGE-ITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLALND-QT--RSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhhccCcCc-ceeeccCCC-CCccchhhhhhhhhhhchhHHHHhhc-cc--CcccCcccccccCCCCcc
Confidence 999999999 999999988 68999999999999999999999876 44 478888899988877654
No 145
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.42 E-value=3.3e-06 Score=73.47 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=68.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
...++||+||-|++|++||.+.+...| .+.+++++.++..+.+||||+|...+..+.++.++.|..++|.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 358899999999999999999988776 57789999999999999999999999999999999999999999654443
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.39 E-value=4.8e-07 Score=85.18 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=114.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
+.+-+...+....+.|++++|.-. .|.++.|..+ ...+...|-++|+|....++++|++.-+- ..-.+.+.+..
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~--~~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~---~~~~R~~q~~P 385 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR--NAQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPS---DDVNRPFQTGP 385 (944)
T ss_pred heeeecccccccccchhhhhcCcc--cccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCch---hhhhcceeecC
Confidence 456678899999999999999643 3666666666 23333478999999999999999875332 12222222211
Q ss_pred CCC---------------------------------CCcc--cccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEE-E
Q 019327 129 ADP---------------------------------RNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-V 172 (342)
Q Consensus 129 ~~~---------------------------------~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-v 172 (342)
... .... ........+|||..||..+++.++.+.|...-.|++ |
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 100 0000 012233689999999999999999999988777877 5
Q ss_pred EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 173 ~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
.|.....+.. +..|||.|..++++..|+..-+.+.+..+.|+|.-.
T Consensus 466 ~lt~~P~~~~-~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 466 ELTRLPTDLL-RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred EeccCCcccc-cchhhheeccccccchhhhcccccccCceEEEeech
Confidence 5555444444 899999999999888888876777777788887543
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.38 E-value=4.8e-07 Score=77.02 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=71.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
......+||+|+...+|.+++..+|+.+|. |..+.+..| ...+.+++|+||+|.+.+.++.+++ |++. .+.++.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~-i~~~ti~~d-~~~~~~k~~~yvef~~~~~~~~ay~-l~gs--~i~~~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGG-INRVTVPKD-KFRGHPKGFAYVEFSSYELVEEAYK-LDGS--EIPGPAI 172 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCC-ccceeeecc-ccCCCcceeEEEecccHhhhHHHhh-cCCc--ccccccc
Confidence 345679999999999999999999999999 998999988 6788899999999999999999999 8887 7788888
Q ss_pred eeecCC
Q 019327 125 TVSWAD 130 (342)
Q Consensus 125 ~v~~~~ 130 (342)
.+.+..
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 877544
No 148
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.35 E-value=1.7e-05 Score=71.16 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=71.3
Q ss_pred CCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCC---CCCC---C-------C
Q 019327 117 FKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA---KPGQ---E-------R 183 (342)
Q Consensus 117 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~---~~~~---~-------~ 183 (342)
+.+..-.-+|.+..+-.....+..++++|.+.|||.+-.-+.|.++|..+|.|..|+|++. .... . .
T Consensus 206 L~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~t 285 (484)
T KOG1855|consen 206 LEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQT 285 (484)
T ss_pred EEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhh
Confidence 3444444456666666655566678899999999999999999999999999999999987 2221 1 1
Q ss_pred CceEEEEeCCHHHHHHHHHhcCCc
Q 019327 184 SRYGFVHFAERSSAMKALKNTEKY 207 (342)
Q Consensus 184 ~g~~fV~f~~~~~a~~a~~~l~~~ 207 (342)
+-+|+|+|++.+.|.+|.+.|+..
T Consensus 286 k~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 286 KECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhhhhhhhHHHHHHHHhhchh
Confidence 568999999999999999988643
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.35 E-value=9.4e-07 Score=83.51 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=76.6
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCC---CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP---GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 214 (342)
.+..+++|||+||++.++++.|...|..||+|..|+|+-.+. ....+.++||-|-+..+|++|++.|++..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356689999999999999999999999999999999987643 34457899999999999999999999999999999
Q ss_pred EEEeccCCC
Q 019327 215 DCSLAKPQA 223 (342)
Q Consensus 215 ~v~~a~~~~ 223 (342)
++-|++...
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999997554
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=4.1e-07 Score=87.70 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=91.2
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEee
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 83 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~ 83 (342)
.++++-+|+|||+|.+.++|.+|+. ++-..+.+ +..|+|.|+|+..|.++|+.++..+|. ++++.++.
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g----------K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt 770 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG----------KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVT 770 (881)
T ss_pred hhccccccceeeEeecCCchhhhhh-hhhhhhhh----------hhhhheeCCCCCCchHHHHhhccccCC-ccccchhh
Confidence 3567889999999999999999998 55455555 567999999999999999999999999 99998887
Q ss_pred CCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCC
Q 019327 84 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131 (342)
Q Consensus 84 ~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~ 131 (342)
. ..|+++|.|+|.|.++.++..++...+.. .+....+.+..+.+
T Consensus 771 ~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~--~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 771 V--RAGKPKGKARVDYNTEADASRKVASVDVA--GKRENNGEVQVSNP 814 (881)
T ss_pred h--hccccccceeccCCCcchhhhhcccchhh--hhhhcCccccccCC
Confidence 6 68899999999999999999987665543 33444444444333
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.21 E-value=4.2e-07 Score=80.11 Aligned_cols=156 Identities=13% Similarity=0.176 Sum_probs=108.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCC--CCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP--QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~--~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..|.|.||.+.+|.++++.+|.-+|+ |.++.|+.++ .........|||.|.+...+..|.. |.++ +.++.-.|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGk-I~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltnt-vfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGK-IPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNT-VFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccc-cccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccc-eeeeeeEEEE
Confidence 36889999999999999999999999 9999998752 2223456689999999998887754 3332 1222222222
Q ss_pred ecCCCCCccc---------------------------------------------------ccccCceEEEEecCCCCCC
Q 019327 127 SWADPRNAES---------------------------------------------------SAASQVKALYVKNLPKDIT 155 (342)
Q Consensus 127 ~~~~~~~~~~---------------------------------------------------~~~~~~~~l~v~~l~~~~~ 155 (342)
-+........ .-..-.++|+|.+|...+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 2211110000 0000037799999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCc
Q 019327 156 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212 (342)
Q Consensus 156 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~ 212 (342)
..++.+.|..+|.|....+..... .-+|-|+|....+...|+.. ++.++.=.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~-~gre~k~q 216 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRS-HGRERKRQ 216 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHh-cchhhhhh
Confidence 999999999999998776643321 45788999999888888885 66555533
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.20 E-value=3.9e-06 Score=62.43 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=45.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC-----ceeCCcEEEEE
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK-----YEIDGQVLDCS 217 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~-----~~~~g~~i~v~ 217 (342)
..|+|.+++..++.++|++.|++|+.|..|.+... ...|+|.|.+.++|++|+.++.. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889999999999999999999999999999876 46999999999999999987653 35566666555
Q ss_pred e
Q 019327 218 L 218 (342)
Q Consensus 218 ~ 218 (342)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.12 E-value=3.4e-06 Score=79.83 Aligned_cols=81 Identities=17% Similarity=0.399 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeC--CCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD--PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~--~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.|||+||++.++++.|...|..||+ |..|+++.. ..+..+.+.|+||.|-+..||++|++.|++. .+-...+++
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgP-lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~--iv~~~e~K~ 251 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGP-LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI--IVMEYEMKL 251 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCc-ccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce--eeeeeeeee
Confidence 58999999999999999999999999 999999864 1233456789999999999999999999996 667778888
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
.|+.+.
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 887544
No 154
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=3.6e-05 Score=70.79 Aligned_cols=99 Identities=15% Similarity=0.346 Sum_probs=80.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhCC---C-c-------cCCeEEEEe---------------ecccCCeEEEcCCCCCCCHHH
Q 019327 11 GYAFVTFRTKELASQAIEELNS---C-E-------LKGKKIKCS---------------AAQAKHRLFIGNVPRNWGEDD 64 (342)
Q Consensus 11 G~afV~f~~~e~A~~a~~~~~g---~-~-------~~g~~i~v~---------------~~~~~~~l~v~nl~~~~te~~ 64 (342)
||+|+.|+++.+....+++..- . . +..+.|+|. .-++.+|||||.||.-++.++
T Consensus 307 ~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~e 386 (520)
T KOG0129|consen 307 GYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEE 386 (520)
T ss_pred cEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHH
Confidence 4999999999999988876432 1 1 112334443 124678999999999999999
Q ss_pred HHHHHH-hhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 65 MRKAVT-KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 65 l~~~f~-~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
|..+|+ .||. |.-+-|-.| .+.+-++|.+=|+|.+..+-.+||++
T Consensus 387 LA~imd~lyGg-V~yaGIDtD-~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 387 LAMIMEDLFGG-VLYVGIDTD-PKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHhcCc-eEEEEeccC-cccCCCCCcceeeecccHHHHHHHhh
Confidence 999999 6998 999999888 36778999999999999999999876
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=2.5e-05 Score=65.48 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEe
Q 019327 20 KELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99 (342)
Q Consensus 20 ~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f 99 (342)
..-|+.|..+|++....++.++|.++-. ..|+|.||..-+..+.|.+.|+.||+ |....++.| ..+++.+-.+|+|
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~ 79 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEF 79 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhh
Confidence 3456777778889999999999999987 99999999999999999999999999 888777777 6788899999999
Q ss_pred cCHHHHHHHHHHhCCCC--CCCCCCCCeee
Q 019327 100 YNHACAEYSRQKMSNPK--FKLDDNAPTVS 127 (342)
Q Consensus 100 ~~~~~a~~a~~~l~~~~--~~~~~~~i~v~ 127 (342)
...-.|.+|+..+.... ....+++.-|.
T Consensus 80 ~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 80 AKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999999875442 23344444443
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.94 E-value=5e-05 Score=66.02 Aligned_cols=82 Identities=21% Similarity=0.461 Sum_probs=65.7
Q ss_pred CceEEEEecCCCCCCHHH----H--HHHHhcCCcEEEEEecCCCCCCCC-Cc--eEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 141 QVKALYVKNLPKDITQDR----L--KELFAHHGKITKVVIPPAKPGQER-SR--YGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~----l--~~~f~~~G~i~~v~i~~~~~~~~~-~g--~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
+..-+||-+|++.+..|+ | .++|.+||.|..|.|-+......+ .+ -.||+|.+.++|.+||.+.++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 346689999998887766 2 478999999999988776532211 22 23999999999999999999999999
Q ss_pred cEEEEEeccCC
Q 019327 212 QVLDCSLAKPQ 222 (342)
Q Consensus 212 ~~i~v~~a~~~ 222 (342)
+.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998754
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=1.8e-05 Score=58.87 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
.|.|.+++..++.++|++.|++|++ |..|.+.+. ..-|||.|.++++|++|++.+...
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~-V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGE-VAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT--------SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCC-cceEEecCC-------CCEEEEEECCcchHHHHHHHHHhc
Confidence 5788889999999999999999998 999888665 237999999999999999987653
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.89 E-value=0.00011 Score=51.00 Aligned_cols=71 Identities=23% Similarity=0.400 Sum_probs=46.5
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 49 HRLFIGNVPRNWGEDDMRK----AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~----~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..|+|.|||.+.+...|+. ++..+|..|.+| +.+-|+|.|.+.+.|++|.+.|++. .+.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----------~~~tAilrF~~~~~A~RA~KRmegE--dVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----------SGGTAILRFPNQEFAERAQKRMEGE--DVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT----SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----------eCCEEEEEeCCHHHHHHHHHhhccc--ccccceE
Confidence 4699999999988777655 445677635443 1357999999999999999999996 7789999
Q ss_pred eeecCCCC
Q 019327 125 TVSWADPR 132 (342)
Q Consensus 125 ~v~~~~~~ 132 (342)
.|++....
T Consensus 70 ~v~~~~~~ 77 (90)
T PF11608_consen 70 SVSFSPKN 77 (90)
T ss_dssp EEESS--S
T ss_pred EEEEcCCc
Confidence 99887544
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.89 E-value=4.3e-05 Score=49.19 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=43.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHH
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 201 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 201 (342)
+.|-|.+.+.+.. +++..+|..||+|+++.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5688899986665 455668889999999988733 679999999999999985
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.85 E-value=1.5e-05 Score=69.46 Aligned_cols=74 Identities=18% Similarity=0.374 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCC-CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~-~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
++||+||-|++|++||.+.+...|- .+.++++..+ +..|++||||+|...+....++.++.|-.+ .|+++.-.|
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-R~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k--~iHGQ~P~V 156 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-RTNGQSKGYALLVLNSDAAVKQTMEILPTK--TIHGQSPTV 156 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-ccCCcccceEEEEecchHHHHHHHHhcccc--eecCCCCee
Confidence 7999999999999999999987663 2677888888 789999999999999999999999988776 666665544
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.78 E-value=3.4e-05 Score=67.89 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=72.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeE--------EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI--------SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~--------~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 118 (342)
.+.+|||-+|+..+++++|.++|.+++. |. .|+|.+| ++++++|+-|.|+|.+...|+.|+..++++ .
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~-ikrnK~t~kPki~~y~d-keT~~~KGeatvS~~D~~~akaai~~~agk--d 140 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGV-IKRNKRTGKPKIKIYTD-KETGAPKGEATVSYEDPPAAKAAIEWFAGK--D 140 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcce-eccCCCCCCcchhcccc-ccccCcCCceeeeecChhhhhhhhhhhccc--c
Confidence 4568999999999999999999999986 53 4777788 689999999999999999999999999997 6
Q ss_pred CCCCCCeeecCCCCC
Q 019327 119 LDDNAPTVSWADPRN 133 (342)
Q Consensus 119 ~~~~~i~v~~~~~~~ 133 (342)
+.+..|+|..+....
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 667888887776554
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.75 E-value=7.6e-05 Score=64.91 Aligned_cols=113 Identities=13% Similarity=0.285 Sum_probs=79.2
Q ss_pred cCCeEEEcCCCCCCCHHHH------HHHHHhhCCCeEEEEEeeCCCCCCCCceE--EEEEecCHHHHHHHHHHhCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDM------RKAVTKIGPGVISIELVKDPQNANQNRGF--AFIEYYNHACAEYSRQKMSNPKFK 118 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l------~~~f~~~G~~v~~v~~~~~~~~~g~~~g~--afV~f~~~~~a~~a~~~l~~~~~~ 118 (342)
.++-+||-.|++.+..|++ .++|.+||. |..|.|-+.........+. .||+|.+.|+|.+||...++. .
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGk-I~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs--~ 189 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGK-IKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS--L 189 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccc-eeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc--c
Confidence 4568999999998877763 579999999 9988885541111122223 499999999999999999997 7
Q ss_pred CCCCCCeeecCCCCCcc----cccccCceEEEEecCC---CCCCHHHHHHH
Q 019327 119 LDDNAPTVSWADPRNAE----SSAASQVKALYVKNLP---KDITQDRLKEL 162 (342)
Q Consensus 119 ~~~~~i~v~~~~~~~~~----~~~~~~~~~l~v~~l~---~~~~~~~l~~~ 162 (342)
++|+.|+..+...+.-. ...-....++|+..-- ++.+.++|...
T Consensus 190 ~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 190 LDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred ccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 89999999887654321 1233445677775432 24566776654
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.69 E-value=0.00025 Score=51.95 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=52.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEE-ecCCCC------CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcE-
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVV-IPPAKP------GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV- 213 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~-i~~~~~------~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~- 213 (342)
...|.|-+.|.. ....|.++|++||+|.+.. +.++.. ......+..|+|+++.+|++||.+ |+..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 467888899977 5577888899999998764 222110 111267999999999999999996 999998864
Q ss_pred EEEEecc
Q 019327 214 LDCSLAK 220 (342)
Q Consensus 214 i~v~~a~ 220 (342)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4467664
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.64 E-value=5e-05 Score=74.11 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=101.5
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEe--ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKG--KKIKCS--AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g--~~i~v~--~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v 79 (342)
..-+...-|+||.|.+...+-.|+-++.+..|.. +++.+. .+...+.+|++.|..++....|...|..||. |..|
T Consensus 407 P~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp-ir~I 485 (975)
T KOG0112|consen 407 PHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP-IRII 485 (975)
T ss_pred CCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCc-ceee
Confidence 3456677899999999999999999998877753 455555 5667889999999999999999999999999 8887
Q ss_pred EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 80 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 80 ~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
.+-.. ..||+|.|.+...++.|++.+.+.++--..+.+.|.++.....
T Consensus 486 dy~hg-------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 486 DYRHG-------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ecccC-------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 76433 3599999999999999999999876666677788888775543
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00018 Score=46.24 Aligned_cols=52 Identities=12% Similarity=0.336 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 109 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 109 (342)
+.|-|.+.+.+.. ++|..+|.+||+ |.++.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGe-I~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGE-IVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCC-EEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 5678888887765 456669999999 999887522 458999999999999985
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.53 E-value=4e-05 Score=64.45 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=59.0
Q ss_pred HHHHHHHh-cCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCCCCCC
Q 019327 157 DRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 229 (342)
Q Consensus 157 ~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~ 229 (342)
++|...|+ +||+|+++.|..+..... +|-++|.|...++|++|++.||+..+.|++|...+......+...-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C 155 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAIC 155 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhh
Confidence 44555555 899999998877665555 8999999999999999999999999999999999987665544433
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00042 Score=64.47 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=64.2
Q ss_pred ceEEEEecCCCCCC------HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC-CcEE
Q 019327 142 VKALYVKNLPKDIT------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVL 214 (342)
Q Consensus 142 ~~~l~v~~l~~~~~------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i 214 (342)
..+|+|.|+|---. ..-|..+|+++|+|+.+.++.+..++. +|+.|++|.+..+|+.|++.||++.|+ .+..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 47899999985332 234778899999999999999988886 999999999999999999999998776 5677
Q ss_pred EEEec
Q 019327 215 DCSLA 219 (342)
Q Consensus 215 ~v~~a 219 (342)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66543
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.27 E-value=0.0074 Score=59.86 Aligned_cols=13 Identities=8% Similarity=0.186 Sum_probs=5.5
Q ss_pred EEeCCHHHHHHHH
Q 019327 189 VHFAERSSAMKAL 201 (342)
Q Consensus 189 V~f~~~~~a~~a~ 201 (342)
|+|.-..+|.++|
T Consensus 1086 IklqIshEaAAcI 1098 (1282)
T KOG0921|consen 1086 IKLQISHEAAACI 1098 (1282)
T ss_pred eeEeccHHHHHHH
Confidence 4444344444443
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.00096 Score=56.23 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 019327 103 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 182 (342)
Q Consensus 103 ~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~ 182 (342)
.-|+.|...|+++ ...++.+.|.++.. ..|+|.||..-++.|.|.+.|+.||+|....+..|.....
T Consensus 5 t~ae~ak~eLd~~--~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 5 TLAEIAKRELDGR--FPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred cHHHHHHHhcCCC--CCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 4566666778876 56788888888764 4699999999999999999999999999877776655444
Q ss_pred CCceEEEEeCCHHHHHHHHHhcCCc----eeCCcEEEEEec
Q 019327 183 RSRYGFVHFAERSSAMKALKNTEKY----EIDGQVLDCSLA 219 (342)
Q Consensus 183 ~~g~~fV~f~~~~~a~~a~~~l~~~----~~~g~~i~v~~a 219 (342)
.+-++|+|...-.|.+|+..++.. ...+++.-|.-.
T Consensus 72 -t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 72 -TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred -cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 688999999999999999987533 333444444433
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.17 E-value=0.0011 Score=56.75 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCCCC-CCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 156 QDRLKELFAHHGKITKVVIPPAKPGQE-RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 156 ~~~l~~~f~~~G~i~~v~i~~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
++++.+.+++||.|..|.|..+..... ..--.||+|+..++|.+|+-.||+..|.|+.++..|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999999998887643221 13467999999999999999999999999999887754
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.17 E-value=0.0021 Score=50.07 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 157 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
++|.+.|.+||++.-|++..+ .-+|+|.+-++|.+|+. +++.++.|+.|+|+...|.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 367788999999999988754 67999999999999999 6999999999999987764
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.11 E-value=0.00048 Score=57.94 Aligned_cols=73 Identities=21% Similarity=0.418 Sum_probs=61.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCC--------CCCC----ceEEEEeCCHHHHHHHHHhcCCce
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG--------QERS----RYGFVHFAERSSAMKALKNTEKYE 208 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~--------~~~~----g~~fV~f~~~~~a~~a~~~l~~~~ 208 (342)
..-.||+++||+.+....|+++|+.||.|-.|.|-..... +.++ .-+.|+|.+-..|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999876554 1112 246699999999999999999999
Q ss_pred eCCcE
Q 019327 209 IDGQV 213 (342)
Q Consensus 209 ~~g~~ 213 (342)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99863
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.05 E-value=0.0034 Score=41.38 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=46.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcC---CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHH---GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
...|+|.++. +++.++|+.+|..| .....|.++.| ..|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 3679999997 68889999999998 23568888887 47899999999999999865
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0015 Score=60.72 Aligned_cols=94 Identities=11% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHh--hCCCeEEEEEeeCCCCCCCCceEEEEEecC
Q 019327 24 SQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK--IGPGVISIELVKDPQNANQNRGFAFIEYYN 101 (342)
Q Consensus 24 ~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~--~G~~v~~v~~~~~~~~~g~~~g~afV~f~~ 101 (342)
.+++....+.+++.+-.+|.....+|.|.|.-||..+..|+|+.||+. +-+ +++|.+-.+ + -=||+|++
T Consensus 151 ~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk-~iscefa~N---~-----nWyITfes 221 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPK-VISCEFAHN---D-----NWYITFES 221 (684)
T ss_pred HHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCC-ceeeeeeec---C-----ceEEEeec
Confidence 445555566777888888888888888999999999999999999974 555 888888665 1 36999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 102 HACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 102 ~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
.+||+.|.+.|....-.|.++.|..
T Consensus 222 d~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 222 DTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred chhHHHHHHHHHHHHHhhcCcchhh
Confidence 9999999988876655677777654
No 175
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.97 E-value=7.1e-05 Score=67.03 Aligned_cols=112 Identities=23% Similarity=0.402 Sum_probs=90.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCC-ccCCeEEEEeeccc----CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeC
Q 019327 10 KGYAFVTFRTKELASQAIEELNSC-ELKGKKIKCSAAQA----KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 84 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~-~~~g~~i~v~~~~~----~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~ 84 (342)
.|||||...+..-|.+|++.+++. ++.|+.+.+..+-+ .+++-|.|+|+...++.|-.++.+||. |+.|..+..
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt 115 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT 115 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc
Confidence 589999999999999999999995 78899999987654 368999999999999999999999999 998877432
Q ss_pred CCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 85 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 85 ~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
-.-.-..-|+|.+.+.++.|+.++++. .+....+++.+
T Consensus 116 ----~~etavvnvty~~~~~~~~ai~kl~g~--Q~en~~~k~~Y 153 (584)
T KOG2193|consen 116 ----DSETAVVNVTYSAQQQHRQAIHKLNGP--QLENQHLKVGY 153 (584)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHhhcch--Hhhhhhhhccc
Confidence 111223447788999999999999985 55555555554
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.002 Score=60.18 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=54.3
Q ss_pred cCCeEEEcCCCCC--CC----HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCC
Q 019327 47 AKHRLFIGNVPRN--WG----EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116 (342)
Q Consensus 47 ~~~~l~v~nl~~~--~t----e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 116 (342)
-...|+|.|+|.- .. ..-|..+|+++|+ |..+.+..+ ..+.++||.|++|++..+|+.|++.|++..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk-~vn~~~P~~--e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGK-IVNMYYPID--EEGGTKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhcc-ccceeeccC--ccCCeeeEEEEEecChhhHHHHHHhcccce
Confidence 3468999999853 22 2345678899999 988888877 456699999999999999999999999963
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.90 E-value=0.0012 Score=59.67 Aligned_cols=67 Identities=19% Similarity=0.372 Sum_probs=55.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeC---CC-CCCC--------CceEEEEEecCHHHHHHHHHHhCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD---PQ-NANQ--------NRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~---~~-~~g~--------~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
+.++|.+.|||.+-.-+.|.++|..+|. |..|+|... |. ..+. .+-+|+|+|...+.|.+|.+.++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~-IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGS-IKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccc-eeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4579999999999888999999999999 999999654 21 1111 356899999999999999998865
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.82 E-value=0.002 Score=57.45 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=60.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCC---CCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG---QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
..|.|.||.+++|.++++.+|.-.|.|.++.|+..... ......|||.|.+...+..|-. |.+++|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999999999874332 2235699999999999887766 5666666666666544
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.72 E-value=0.0015 Score=55.07 Aligned_cols=71 Identities=14% Similarity=0.301 Sum_probs=58.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCC--------CCCc----eEEEEEecCHHHHHHHHHHhCCCC
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA--------NQNR----GFAFIEYYNHACAEYSRQKMSNPK 116 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~--------g~~~----g~afV~f~~~~~a~~a~~~l~~~~ 116 (342)
..||+++||+.++-.-|+++|++||+ |-.|.|.+. ... +.++ --++|+|.+...|..+.+.||+.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGe-VGRvylqpE-~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~- 151 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGE-VGRVYLQPE-DDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT- 151 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccc-cceEEecch-hhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC-
Confidence 57999999999999999999999999 999999775 122 1222 24789999999999999999997
Q ss_pred CCCCCCC
Q 019327 117 FKLDDNA 123 (342)
Q Consensus 117 ~~~~~~~ 123 (342)
.|.++.
T Consensus 152 -~Iggkk 157 (278)
T KOG3152|consen 152 -PIGGKK 157 (278)
T ss_pred -ccCCCC
Confidence 555554
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.68 E-value=0.014 Score=38.54 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh--CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKI--GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~--G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 112 (342)
..+|+|.++. +++.+||+.+|..| ......|+.+-| --|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD--------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD--------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC--------CcEEEEECCHHHHHHHHHcC
Confidence 3578999985 47789999999999 112578888888 25889999999999999764
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.58 E-value=0.0031 Score=59.31 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=64.4
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHh-cCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee---CCcE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI---DGQV 213 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~---~g~~ 213 (342)
....++.|||.||-.-+|.-+|+.++. ..|.|++. +|..- +..|||.|.+.++|.+.+.+||+..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 344579999999999999999999998 45556655 43322 78999999999999999999999744 4589
Q ss_pred EEEEeccCCC
Q 019327 214 LDCSLAKPQA 223 (342)
Q Consensus 214 i~v~~a~~~~ 223 (342)
|.+.|+....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9999987544
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.55 E-value=0.0016 Score=55.08 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=48.2
Q ss_pred HHHHHHH-hhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCC
Q 019327 64 DMRKAVT-KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 130 (342)
Q Consensus 64 ~l~~~f~-~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~ 130 (342)
||...|+ +||+ |+++.|-.+ ..-...|-+||.|..+++|++|++.||+. .+.+++|...+..
T Consensus 84 d~f~E~~~kygE-iee~~Vc~N--l~~hl~GNVYV~f~~Ee~ae~a~~~lnnR--w~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGE-IEELNVCDN--LGDHLVGNVYVKFRSEEDAEAALEDLNNR--WYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhh-hhhhhhhcc--cchhhhhhhhhhcccHHHHHHHHHHHcCc--cccCCcceeeecC
Confidence 3333444 7898 998877655 33456789999999999999999999997 7888888876554
No 183
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.52 E-value=0.034 Score=49.04 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 019327 264 PAGFAQPMVYG 274 (342)
Q Consensus 264 ~~~~~~~~~~~ 274 (342)
..+|.+|..+.
T Consensus 381 Gggyqqp~~~~ 391 (465)
T KOG3973|consen 381 GGGYQQPQQQQ 391 (465)
T ss_pred CCCCcCchhhh
Confidence 34455555443
No 184
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.40 E-value=0.034 Score=49.10 Aligned_cols=7 Identities=43% Similarity=0.847 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 019327 334 RGRSRYN 340 (342)
Q Consensus 334 ~g~~r~~ 340 (342)
+|++.||
T Consensus 455 ggrg~y~ 461 (465)
T KOG3973|consen 455 GGRGGYR 461 (465)
T ss_pred CCCcccC
Confidence 4444454
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.23 E-value=0.048 Score=40.81 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=50.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCC
Q 019327 51 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 117 (342)
+.+...|..++.++|..+.+.+-+.|..++|++| ...++-.++++|.+.++|+...+.+|++.|
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird---~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD---GTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeC---CCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4444555566677787777777777899999998 234677899999999999999999999755
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.19 E-value=0.012 Score=40.97 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=42.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
++..+|. +|.++...||.++|+.||. ..|..+.| .-|||.....+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~--I~VsWi~d--------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQ--IYVSWIND--------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCC--EEEEEECT--------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCc--EEEEEEcC--------CcEEEEeecHHHHHHHHHHhcc
Confidence 3445555 9999999999999999997 55666666 3699999999999999988753
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.14 E-value=0.16 Score=44.15 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCC------CCCCCCceEEEEEecCHHHHHH----HHHHhCCCCC
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP------QNANQNRGFAFIEYYNHACAEY----SRQKMSNPKF 117 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~------~~~g~~~g~afV~f~~~~~a~~----a~~~l~~~~~ 117 (342)
.+.|.+.|+..+++-.++...|.+||+ |++|.++.+. .+.-.......+.|-+.+.|-. .++.|..-.-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999 9999999872 1122344678999999998875 3444433333
Q ss_pred CCCCCCCeeecCCCCCc-----c-----------------cccccCceEEEEecCCCCCCHHHHHHHH---hcCC----c
Q 019327 118 KLDDNAPTVSWADPRNA-----E-----------------SSAASQVKALYVKNLPKDITQDRLKELF---AHHG----K 168 (342)
Q Consensus 118 ~~~~~~i~v~~~~~~~~-----~-----------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f---~~~G----~ 168 (342)
.+....+.+++..-... . -.....++.|.|.--.+...++-+.+.+ ..-+ .
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 45566666554331000 0 0122336778776443332333333322 1112 4
Q ss_pred EEEEEecCCCC--CCCCCceEEEEeCCHHHHHHHHHhcCCc
Q 019327 169 ITKVVIPPAKP--GQERSRYGFVHFAERSSAMKALKNTEKY 207 (342)
Q Consensus 169 i~~v~i~~~~~--~~~~~g~~fV~f~~~~~a~~a~~~l~~~ 207 (342)
|++|.|+.... ...++.||.++|-+..-|...++.+...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 67788876543 3346789999999999999988877643
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.08 E-value=0.02 Score=46.90 Aligned_cols=80 Identities=8% Similarity=0.032 Sum_probs=51.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-CCcE---EEEE--ecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC----
Q 019327 142 VKALYVKNLPKDITQDRLKELFAH-HGKI---TKVV--IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG---- 211 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~-~G~i---~~v~--i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g---- 211 (342)
..+|.|++||+.+|++++.+.++. ++.. ..+. +.........-.-|||.|.+.+++......++++.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999997776 5554 3333 22222222224579999999999999999999977654
Q ss_pred -cEEEEEeccC
Q 019327 212 -QVLDCSLAKP 221 (342)
Q Consensus 212 -~~i~v~~a~~ 221 (342)
....|++|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3556777654
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.01 E-value=0.021 Score=53.48 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhc--CCcEEEEEecCCCCCCCCCceEEEEeCCH
Q 019327 117 FKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAER 194 (342)
Q Consensus 117 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~~fV~f~~~ 194 (342)
+.++.+-.+|..... .+.|.|+.||..+-.|+++.+|.. +-.+.+|.+-.+ .-=||+|++.
T Consensus 160 VqvDekgekVrp~~k----------RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd 222 (684)
T KOG2591|consen 160 VQVDEKGEKVRPNHK----------RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESD 222 (684)
T ss_pred ceeccCccccccCcc----------eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecc
Confidence 355666555543332 367788999999999999999954 667888877654 3458999999
Q ss_pred HHHHHHHHhcCC--ceeCCcEEEEEe
Q 019327 195 SSAMKALKNTEK--YEIDGQVLDCSL 218 (342)
Q Consensus 195 ~~a~~a~~~l~~--~~~~g~~i~v~~ 218 (342)
.+|+.|.+.|.. ++|.|+.|...+
T Consensus 223 ~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 223 TDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred hhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 999999988763 477787765544
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.86 E-value=0.049 Score=38.03 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=42.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
...+|. .|.+|...||.++|+.||.| .|.++.| ..|||...+.+.|..|+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 556665 99999999999999999976 4566655 4899999999999999888764
No 191
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.64 E-value=0.029 Score=41.18 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=47.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEE-EeeCC-----CCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE-LVKDP-----QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~-~~~~~-----~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 119 (342)
...+.|.|=+.|+. ....|.++|++||+ |.+.. +.++. ........+..|+|+++.+|.+||.+ |+. .+
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~-Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~--i~ 78 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGT-ILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT--IF 78 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS--EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE--EE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcce-EEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe--EE
Confidence 34677888899988 56788889999999 77664 11110 00112346899999999999999874 443 44
Q ss_pred CCCC-CeeecC
Q 019327 120 DDNA-PTVSWA 129 (342)
Q Consensus 120 ~~~~-i~v~~~ 129 (342)
.+.. +-|.+.
T Consensus 79 ~g~~mvGV~~~ 89 (100)
T PF05172_consen 79 SGSLMVGVKPC 89 (100)
T ss_dssp TTCEEEEEEE-
T ss_pred cCcEEEEEEEc
Confidence 4433 334444
No 192
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.64 E-value=0.041 Score=47.52 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCC
Q 019327 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 130 (342)
Q Consensus 62 e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~ 130 (342)
++++++-+++||. |..|.|...|...-.-.---||+|+..++|.+|+-.||++ .+.|+.++..+..
T Consensus 300 ede~keEceKyg~-V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR--yFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGK-VGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR--YFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcc-eeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc--eecceeeeheecc
Confidence 4577888999999 9999887764222222335899999999999999999997 7888887766543
No 193
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.62 E-value=0.0068 Score=43.11 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=46.5
Q ss_pred EEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc-----ccccccCceEEEEecCCCCCCHHHHHHHH
Q 019327 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-----ESSAASQVKALYVKNLPKDITQDRLKELF 163 (342)
Q Consensus 95 afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~l~v~~l~~~~~~~~l~~~f 163 (342)
|+|+|.++.-|+..++.-.- .+.+++..+.|....-... .-....+.++|.|.|||...++++|+|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~-~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKH-PVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEE-EEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999998875332 3555665555543221111 11344557999999999999999998854
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.57 E-value=0.045 Score=42.18 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=57.4
Q ss_pred ccCceEEEEecCCCCCCH-HH---HHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEE
Q 019327 139 ASQVKALYVKNLPKDITQ-DR---LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~-~~---l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 214 (342)
...-.+|.|.=|..++.. +| +...++.||+|.+|.+.- +..|.|.|++..+|-+|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 344578888766665532 34 445567899999998764 56899999999999999999876 5678888
Q ss_pred EEEeccC
Q 019327 215 DCSLAKP 221 (342)
Q Consensus 215 ~v~~a~~ 221 (342)
.++|-.+
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8888653
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.43 E-value=0.066 Score=44.08 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=47.6
Q ss_pred CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC--CceeCCcEEEEEeccCCC
Q 019327 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 155 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a~~~~ 223 (342)
..+.|+++|..++.+..+.+++. =+-..|.|.+.++|.+|...|+ +..+.|..++|-++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999888877765 4578999999999999999999 899999999999996544
No 196
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.33 E-value=0.085 Score=37.57 Aligned_cols=57 Identities=16% Similarity=0.375 Sum_probs=43.0
Q ss_pred EEEEeCCHHHHHHHHHHhCC-CccCCeE---------------EEEeecccCCeEEEcCCCCCCCHHHHHHHH
Q 019327 13 AFVTFRTKELASQAIEELNS-CELKGKK---------------IKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 69 (342)
Q Consensus 13 afV~f~~~e~A~~a~~~~~g-~~~~g~~---------------i~v~~~~~~~~l~v~nl~~~~te~~l~~~f 69 (342)
|.|+|.+.+-|...++.-.. ..+.++. ++|...-++++|.|.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 78999999999999985332 2333433 344456688999999999999999998743
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.31 E-value=0.0078 Score=53.03 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=62.9
Q ss_pred eEEEEecCCCCCCHHHHH---HHHhcCCcEEEEEecCCCCCC---CCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 143 KALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~---~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
+-+||-+|+..+.++.+. +.|.+||.|..|.+.++.... .....++|+|+..++|..||...++..++++.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567788888776555443 568899999999998876311 11235899999999999999999999999999888
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8877653
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.26 E-value=0.014 Score=51.44 Aligned_cols=111 Identities=16% Similarity=0.295 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCHHHHH---HHHHhhCCCeEEEEEeeCCC--CCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 48 KHRLFIGNVPRNWGEDDMR---KAVTKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~---~~f~~~G~~v~~v~~~~~~~--~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
++.+||-.|+....++++. ++|.+||. |..|.+-+++. ..--...-++|+|...|+|..||...++ +..+++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygk-i~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g--~~~dg~ 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGK-INKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG--FVDDGR 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccccccc-ceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh--HHhhhh
Confidence 4678899999887666553 58889999 99998888741 1111223499999999999999999988 477888
Q ss_pred CCeeecCCCCCccc----ccccCceEEEEecCCC---CCCHHHHHH
Q 019327 123 APTVSWADPRNAES----SAASQVKALYVKNLPK---DITQDRLKE 161 (342)
Q Consensus 123 ~i~v~~~~~~~~~~----~~~~~~~~l~v~~l~~---~~~~~~l~~ 161 (342)
.++..+........ ..-....++|+.-+-. .++.+++..
T Consensus 154 ~lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~ 199 (327)
T KOG2068|consen 154 ALKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKS 199 (327)
T ss_pred hhHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHH
Confidence 87777666553321 2222334666655432 344455443
No 199
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=0.17 Score=43.98 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=55.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCc-EEEEEecc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLDCSLAK 220 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~a~ 220 (342)
..-|.|-+++.... .-|..+|++||+|++...... -.+-+|.|.+..+|++||.+ |++.|++. -|-|+-..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 46677778876543 567788999999988765522 56999999999999999997 88888875 34455544
Q ss_pred CCC
Q 019327 221 PQA 223 (342)
Q Consensus 221 ~~~ 223 (342)
.+.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 443
No 200
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.96 E-value=0.018 Score=54.28 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=52.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
..+.|+|.||-.-.|.-+|+.++.+-|.+|++.+|-+ .|-.|||.|.+.++|....++|++-
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-------IKShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-------IKSHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-------hhcceeEecccHHHHHHHHHHHhcc
Confidence 4468999999999999999999997666577775422 2558999999999999999999984
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.67 E-value=0.1 Score=40.29 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=53.3
Q ss_pred CeEEEcCCCCCC-CHHHH---HHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 49 HRLFIGNVPRNW-GEDDM---RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 49 ~~l~v~nl~~~~-te~~l---~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.+|.|.=|...+ ..+|| ...++.||+ |.+|.+.- +--|.|.|.+..+|.+|+.+++. ...+..+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGp-I~SVT~cG--------rqsavVvF~d~~SAC~Av~Af~s---~~pgtm~ 154 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGP-IQSVTLCG--------RQSAVVVFKDITSACKAVSAFQS---RAPGTMF 154 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCC-cceeeecC--------CceEEEEehhhHHHHHHHHhhcC---CCCCceE
Confidence 578887766664 33444 455677999 99987743 23699999999999999999887 5667778
Q ss_pred eeecCCC
Q 019327 125 TVSWADP 131 (342)
Q Consensus 125 ~v~~~~~ 131 (342)
.++|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8887653
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.60 E-value=0.44 Score=35.64 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=49.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
..+.+...|..++.++|..+.+.+- .|..++|++|... ++-.++++|.+.++|+.-.+.+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4444445555566677766666654 5778899887542 35688999999999999999999987765
No 203
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.08 E-value=0.42 Score=47.12 Aligned_cols=18 Identities=0% Similarity=0.064 Sum_probs=11.5
Q ss_pred EeCCHHHHHHHHHHhCCC
Q 019327 16 TFRTKELASQAIEELNSC 33 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~ 33 (342)
.-++..++.+|++++-+.
T Consensus 205 ~~k~~~eiIrClka~mNn 222 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFMNN 222 (1102)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 345667777888776543
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.04 E-value=0.036 Score=51.02 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=56.6
Q ss_pred EEEecCCCCC-CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCC
Q 019327 145 LYVKNLPKDI-TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 145 l~v~~l~~~~-~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 223 (342)
|-+.-.+... +-++|...|.+||+|..|.|-.. .-.|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3333334433 45889999999999999988655 3578999999999977766 48889999999999988743
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.95 E-value=0.23 Score=45.62 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=59.9
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 118 (342)
+.+.|+|--+|-.++-.||..|...+-..|.++++++|. -.++-.++|.|.+.++|....+.+|+..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~---~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG---MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC---CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 367899999999999999999999887779999999982 234567999999999999999999998553
No 206
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.33 Score=46.09 Aligned_cols=126 Identities=13% Similarity=0.215 Sum_probs=73.5
Q ss_pred ccCCeEEEcCCCCC-CCHHHHHHHHHhh----CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRN-WGEDDMRKAVTKI----GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 46 ~~~~~l~v~nl~~~-~te~~l~~~f~~~----G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
...++|-|.|+.|+ +...||.-+|..| |. |.+|.|... ..|+.+ |... .+.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGs-ilSV~IYpS--eFGkeR-------------------M~eE--eV~ 227 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGS-ILSVKIYPS--EFGKER-------------------MKEE--EVH 227 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCc-eeEEEechh--hhhHHH-------------------hhhh--ccc
Confidence 34679999999998 8999999999987 34 888888765 333221 2211 333
Q ss_pred CCCCeeecC-CCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHH
Q 019327 121 DNAPTVSWA-DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199 (342)
Q Consensus 121 ~~~i~v~~~-~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~ 199 (342)
|.++.+.-. ..... . . ..+...++-.+.-+.+|. +..++ --||.|+|.+.+.|.+
T Consensus 228 GP~~el~~~~e~~~~--s-----~------sD~ee~~~~~~~kLR~Yq-~~rLk----------YYyAVvecDsi~tA~~ 283 (650)
T KOG2318|consen 228 GPPKELFKPVEEYKE--S-----E------SDDEEEEDVDREKLRQYQ-LNRLK----------YYYAVVECDSIETAKA 283 (650)
T ss_pred CChhhhccccccCcc--c-----c------cchhhhhhHHHHHHHHHH-hhhhe----------eEEEEEEecCchHHHH
Confidence 443332211 11110 0 0 111111112233333332 22221 2489999999999999
Q ss_pred HHHhcCCceeCCc--EEEEEec
Q 019327 200 ALKNTEKYEIDGQ--VLDCSLA 219 (342)
Q Consensus 200 a~~~l~~~~~~g~--~i~v~~a 219 (342)
+.+.|+|.++... .|.+.|.
T Consensus 284 vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 284 VYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHhcCcceeccccceeeeeec
Confidence 9999999988754 4555553
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.64 E-value=0.33 Score=33.48 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHhcCC-----cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 151 PKDITQDRLKELFAHHG-----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 151 ~~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
-..++..+|..++.... .|-.|.|.. .|+||+-... .|..+++.|++..+.|++|+|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34678888888887664 355788863 5899998655 788899999999999999999875
No 208
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.70 E-value=0.1 Score=42.75 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=43.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHh-hCCCe--EEEEEeeCCCCC-CCCceEEEEEecCHHHHHHHHHHhCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTK-IGPGV--ISIELVKDPQNA-NQNRGFAFIEYYNHACAEYSRQKMSNPK 116 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~-~G~~v--~~v~~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~~~~ 116 (342)
+...+|.|.+||+.+||+++++.++. ++..+ ..+.-....... ...-.-|||.|.+.+++....+.+++..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 45678999999999999999997776 66521 223211210111 1123459999999999999999988853
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.34 E-value=0.11 Score=51.39 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
+..+.|.+-..+-..|..+|.+||. |.+.+.+++ ...|.|+|.+.+.|..|+++++++++-.-+-+.+|.++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~-v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGS-VASAWTLRD-------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcc-hhhheeccc-------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 5566666677888899999999999 999999888 45799999999999999999999988888888888887
Q ss_pred CCCC
Q 019327 130 DPRN 133 (342)
Q Consensus 130 ~~~~ 133 (342)
....
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 7553
No 210
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.26 E-value=0.2 Score=39.25 Aligned_cols=56 Identities=11% Similarity=0.306 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 64 ~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
+|.+.|..||+ |.-|+++.+ .-+|+|.+-++|-+|++ +++ ..++++.++|....+.
T Consensus 52 ~ll~~~~~~Ge-vvLvRfv~~---------~mwVTF~dg~sALaals-~dg--~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGE-VVLVRFVGD---------TMWVTFRDGQSALAALS-LDG--IQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS--ECEEEEETT---------CEEEEESSCHHHHHHHH-GCC--SEETTEEEEEEE----
T ss_pred HHHHHHHhCCc-eEEEEEeCC---------eEEEEECccHHHHHHHc-cCC--cEECCEEEEEEeCCcc
Confidence 66777888998 888888765 58999999999999987 454 4788888888765543
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.92 E-value=0.13 Score=50.90 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=63.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee--CCcEEEEEeccC
Q 019327 144 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--DGQVLDCSLAKP 221 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~a~~ 221 (342)
+.++.|++-..+..-|..+|.+||.|.++..+++ -..|.|+|.+.+.|..|+++|+++++ .|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3445555556777889999999999999988877 57899999999999999999999855 578899999987
Q ss_pred CCCCC
Q 019327 222 QADQK 226 (342)
Q Consensus 222 ~~~~~ 226 (342)
-+.-+
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 66543
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.07 E-value=0.79 Score=42.30 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=58.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
+..|+|-.+|..++-.||..|+..+- .|.+++|++|.... +=..+|+|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999999999999997764 58899999964332 4578999999999999999999988765
No 213
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.01 E-value=3.6 Score=41.01 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHhcCCcEE-----EEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 151 PKDITQDRLKELFAHHGKIT-----KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 151 ~~~~~~~~l~~~f~~~G~i~-----~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
...++..+|..++..-+.|. .|+|. ..|.||+... +.|...+..|++..+.|+.|.|+.+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 44677788887776555444 56665 3588999854 45778899999999999999999885
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.49 E-value=0.12 Score=47.79 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=58.6
Q ss_pred ccCCeEEEcCCCCCC-CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNW-GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~-te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.+.+.|-+.-.+... |-++|..+|.+||+ |..|.+-.. .-.|.|+|.+..+|-+|... .+ ..|+++.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~-i~n~qv~~~-------~~~a~vTF~t~aeag~a~~s-~~--avlnnr~i 438 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGE-IENIQVDYS-------SLHAVVTFKTRAEAGEAYAS-HG--AVLNNRFI 438 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCc-cccccccCc-------hhhheeeeeccccccchhcc-cc--ceecCcee
Confidence 344566666677664 67899999999999 998877433 23699999999999666543 22 47899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
+|.|..+..
T Consensus 439 Kl~whnps~ 447 (526)
T KOG2135|consen 439 KLFWHNPSP 447 (526)
T ss_pred EEEEecCCc
Confidence 999998864
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.25 E-value=0.47 Score=31.85 Aligned_cols=29 Identities=7% Similarity=0.206 Sum_probs=26.2
Q ss_pred EEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 019327 14 FVTFRTKELASQAIEELNSCELKGKKIKC 42 (342)
Q Consensus 14 fV~f~~~e~A~~a~~~~~g~~~~g~~i~v 42 (342)
||.|.+.++|++|.+..++..+....|.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 89999999999999999999888877765
No 216
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.62 E-value=0.62 Score=38.40 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCC
Q 019327 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133 (342)
Q Consensus 61 te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~ 133 (342)
..+.|+++|..++. +.++.+++. -+-..|.|.+.++|.+|...|+.....+.+..+++.++....
T Consensus 8 ~~~~l~~l~~~~~~-~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDP-PVQFSPLKS-------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-S-S-EEEEETT-------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCC-ceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45889999999998 777777665 346899999999999999998822236778888888775443
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.52 E-value=0.38 Score=46.41 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=63.7
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
.......++||+|+...+.++-++.+...+|.|.++... .|+|+.|.......+|+..++...+++..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 444556899999999999999999999999998887664 29999999999999999999998998887777
Q ss_pred Eec
Q 019327 217 SLA 219 (342)
Q Consensus 217 ~~a 219 (342)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.91 E-value=2 Score=29.56 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHhhCC----CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 58 RNWGEDDMRKAVTKIGP----GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 58 ~~~te~~l~~~f~~~G~----~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
..++..+|..++..... +|-.|.|..+ |+||+-... .|+.+++.|++. .+.++.+.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~---------~S~vev~~~-~a~~v~~~l~~~--~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN---------FSFVEVPEE-VAEKVLEALNGK--KIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS----------EEEEE-TT--HHHHHHHHTT----SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee---------EEEEEECHH-HHHHHHHHhcCC--CCCCeeEEEEEC
Confidence 45888999999987643 3567888665 899998654 788899999986 788999988754
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=86.49 E-value=1.8 Score=34.34 Aligned_cols=109 Identities=8% Similarity=0.046 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccc
Q 019327 59 NWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 137 (342)
Q Consensus 59 ~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~ 137 (342)
..+-+.|.+.+.+ ++. ...+.+..- ..++..++|.+.+++.++++ ..+..+++..+.+..-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~-~~~~~i~~l------~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~ 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKL-KGGVKIRDL------GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSE 97 (153)
T ss_pred CCCHHHHHHHHHHHhCC-CCcEEEEEe------CCCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccc
Confidence 4566677776665 333 223333322 13689999999999998865 345677777777765444322211
Q ss_pred cc--cCceEEEEecCCCC-CCHHHHHHHHhcCCcEEEEEecCC
Q 019327 138 AA--SQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPA 177 (342)
Q Consensus 138 ~~--~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~v~i~~~ 177 (342)
.. ...--|.|.|||.. ++++.|+.+.+.+|++.++.....
T Consensus 98 ~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 11 12344777899986 677889999999999998876544
No 220
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.42 E-value=0.3 Score=47.08 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=2.3
Q ss_pred EEEEEeccCCC
Q 019327 213 VLDCSLAKPQA 223 (342)
Q Consensus 213 ~i~v~~a~~~~ 223 (342)
.|.++|.....
T Consensus 456 ~itlSWk~~~~ 466 (556)
T PF05918_consen 456 NITLSWKEAKK 466 (556)
T ss_dssp ----TTS----
T ss_pred ccceeeeeccc
Confidence 47777776555
No 221
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=8.6 Score=35.25 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=30.7
Q ss_pred cccCCeEEEcCCCCC-CCHHHHHHHHHhh---CCCeEEEEEeeC
Q 019327 45 AQAKHRLFIGNVPRN-WGEDDMRKAVTKI---GPGVISIELVKD 84 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~-~te~~l~~~f~~~---G~~v~~v~~~~~ 84 (342)
-++..+|-|-||.|+ +...+|...|+.| |..|..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 455678999999998 7889999999986 222777777664
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.66 E-value=8.9 Score=25.72 Aligned_cols=55 Identities=7% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 153 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 153 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
.++-++|+..+..|. ..+|. .|+ -==||.|.+.++|+++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~------tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR------TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC------CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999985 44443 332 22379999999999999999998887766654
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=82.51 E-value=2.8 Score=36.66 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=60.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCC-------CCCCCceEEEEeCCHHHHHHH----HHhcC--Cce
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP-------GQERSRYGFVHFAERSSAMKA----LKNTE--KYE 208 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~~fV~f~~~~~a~~a----~~~l~--~~~ 208 (342)
++.|.+.|+..+++--.+...|.+||.|++|.++.+.. .........+.|-+.+.+..- ++.|. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999998888889999999999999998761 112246889999998876544 33333 246
Q ss_pred eCCcEEEEEeccC
Q 019327 209 IDGQVLDCSLAKP 221 (342)
Q Consensus 209 ~~g~~i~v~~a~~ 221 (342)
+....|.++|..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 7788888888764
No 224
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.95 E-value=0.11 Score=50.01 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=57.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.-+.-++||+|+...+.++-++.+...+|- |.+++... |+|.+|..+.-+..|+..+.. +.++++.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~-v~s~kr~~----------fgf~~f~~~~~~~ra~r~~t~--~~~~~~kl 103 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGF-VPSWKRDK----------FGFCEFLKHIGDLRASRLLTE--LNIDDQKL 103 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCc-chhhhhhh----------hcccchhhHHHHHHHHHHhcc--cCCCcchh
Confidence 335579999999999999999999999997 76665432 899999999999999988875 46777666
Q ss_pred eeec
Q 019327 125 TVSW 128 (342)
Q Consensus 125 ~v~~ 128 (342)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 5543
No 225
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=81.20 E-value=3.3 Score=37.52 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHh
Q 019327 13 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 71 (342)
Q Consensus 13 afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~ 71 (342)
|||+|++.++|..|.+.+... +...++++.+-+.+.|.=.||.....+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 799999999999999965433 345668888888888888999888888888776654
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.68 E-value=10 Score=34.68 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=48.0
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHh
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
.-...|-|.++|...-.+||...|+.|+. =-+|.++.| -.+|-.|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 34688999999999999999999999874 347777766 4899999999999999885
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=78.36 E-value=2.4 Score=34.36 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=52.9
Q ss_pred eEEEEecCCCCCCH-----HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCc-EEEE
Q 019327 143 KALYVKNLPKDITQ-----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLDC 216 (342)
Q Consensus 143 ~~l~v~~l~~~~~~-----~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 216 (342)
..+.+-+++..+.. .....+|.+|-+.....+++. .+...|.|.+.+.|..|..+++...|.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44555566554321 334456666655555555543 46777999999999999999999999998 8888
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
-++++..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8887654
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.98 E-value=6 Score=36.14 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
.+.|-|.++|.....+||...|+.|+..=.+|+.+.| -.||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd--------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD--------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec--------ceeEEeecchHHHHHHhhc
Confidence 3689999999999999999999999874455555555 3799999999999999854
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.47 E-value=1.2 Score=35.26 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=55.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc------------CCeEEEcCCCCC-CCHHHHHHHHHhhCCC
Q 019327 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA------------KHRLFIGNVPRN-WGEDDMRKAVTKIGPG 75 (342)
Q Consensus 9 ~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~------------~~~l~v~nl~~~-~te~~l~~~f~~~G~~ 75 (342)
..++..+.|.+.+++.++++. .--.+.+..+.+..-++ .-.|.|.+||.. .+++-|+.+.+.+|+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~- 131 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE- 131 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCC-
Confidence 468999999999999999983 33456666666653331 224777899987 788999999999999
Q ss_pred eEEEEEee
Q 019327 76 VISIELVK 83 (342)
Q Consensus 76 v~~v~~~~ 83 (342)
+.++....
T Consensus 132 ~i~vD~~t 139 (153)
T PF14111_consen 132 PIEVDENT 139 (153)
T ss_pred eEEEEcCC
Confidence 88776644
No 230
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.47 E-value=8.2 Score=26.06 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 157 DRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 157 ~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
++|.+.|...| .|..+.-+..+.+...-..-||+.+...+... .++-..+.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 56777887777 67788877777666656788899887766333 34455788888888877654
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.38 E-value=6.1 Score=34.37 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCH-------HHHHHHHHHh
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH-------ACAEYSRQKM 112 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~-------~~a~~a~~~l 112 (342)
.-|+++||+.++.-.||+..+.+.+. +...+.+. -+.+-||+.|.+. +++.++++.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~--~pm~iswk-----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC--TPMSISWK-----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC--CceeEeee-----cCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 36999999999999999999998875 44444443 3467899999743 4455555443
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=75.71 E-value=5.6 Score=35.98 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=40.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhc
Q 019327 95 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 165 (342)
Q Consensus 95 afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 165 (342)
|||+|++..+|+.|++.+.. .+...+.++.+... +.|.-.||..+..+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~----~~~~~~~v~~APeP----------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS----KRPNSWRVSPAPEP----------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc----CCCCCceEeeCCCc----------ccccccccCCChHHHHHHHHHHH
Confidence 79999999999999997553 22344566555433 56778899777777666665543
No 233
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.57 E-value=9.5 Score=33.59 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
+..|-|-++|+.. -.-|..+|+++|+ |++...- ..-.+-+|.|.+..+|++||.+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~-Vvkhv~~-------~ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGE-VVKHVTP-------SNGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCe-eeeeecC-------CCCceEEEEecchhHHHHhhhh
Confidence 4577787887764 3578899999999 7655432 2346999999999999999875
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=74.46 E-value=8 Score=26.07 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=46.2
Q ss_pred HHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 157 DRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 157 ~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
++|.+.|.++| ++..+.-+....+..+-..-+|+.....+-.. .|+-+.|.+++|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888888 68888888887777667788888877654433 35566788999888876543
No 235
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=73.46 E-value=1.1 Score=43.39 Aligned_cols=6 Identities=83% Similarity=1.536 Sum_probs=0.0
Q ss_pred CCCCCC
Q 019327 333 GRGRSR 338 (342)
Q Consensus 333 ~~g~~r 338 (342)
+|||||
T Consensus 546 g~grg~ 551 (556)
T PF05918_consen 546 GRGRGR 551 (556)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 333333
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.37 E-value=17 Score=31.70 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=36.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcE-EEEEecCCCCCCCCCceEEEEeCCH
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKI-TKVVIPPAKPGQERSRYGFVHFAER 194 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~~fV~f~~~ 194 (342)
...|+|.||+.++.-.||+..+.+-+.+ .++.+--. .+-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~------~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH------FGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecC------CcceeEecCCc
Confidence 4679999999999999999999876643 34444322 68899999775
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.27 E-value=17 Score=31.53 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=28.9
Q ss_pred CceEEEEecCCCC------------CCHHHHHHHHhcCCcEEEEEecC
Q 019327 141 QVKALYVKNLPKD------------ITQDRLKELFAHHGKITKVVIPP 176 (342)
Q Consensus 141 ~~~~l~v~~l~~~------------~~~~~l~~~f~~~G~i~~v~i~~ 176 (342)
...+||+.+||-. -+++.|+..|+.||.|..|.|+-
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3588999998853 34678999999999999888764
No 238
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=66.23 E-value=10 Score=28.22 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=59.9
Q ss_pred CCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc
Q 019327 56 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 56 l~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~ 135 (342)
||+-++ .|-++|+.=|+ |.+|..+.. |. ..+ |+-.+++.--.+++. |.+.........
T Consensus 11 lPPYTn--KLSDYfeSPGK-I~svItvtq--------------yp-dnd---al~~~~G~lE~vDg~-i~IGs~q~~~sV 68 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGK-IQSVITVTQ--------------YP-DND---ALLYVHGTLEQVDGN-IRIGSGQTPASV 68 (145)
T ss_pred cCCccc--hhhHHhcCCCc-eEEEEEEec--------------cC-Cch---hhheeeeehhhccCc-EEEccCCCcccE
Confidence 677664 58899999999 888766554 11 112 233334432233444 444333221110
Q ss_pred c--ccccCceEEEEecCCCCCCHHHHHHHHhc---CCcEEEEEecCCCCCCCCCceEEEEeCCH
Q 019327 136 S--SAASQVKALYVKNLPKDITQDRLKELFAH---HGKITKVVIPPAKPGQERSRYGFVHFAER 194 (342)
Q Consensus 136 ~--~~~~~~~~l~v~~l~~~~~~~~l~~~f~~---~G~i~~v~i~~~~~~~~~~g~~fV~f~~~ 194 (342)
. .......++| -|..+|-.+|+++|.+ |-.|++-.+.+|-.-.-+-..||.-|...
T Consensus 69 ~i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 69 RIQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EEecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0 1111112222 3667899999999975 44455544555432222245788887654
No 239
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=64.13 E-value=40 Score=22.85 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=38.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee-cccCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSA-AQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 11 G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~-~~~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
.+.+|+|.|..+|.+|-+.|....+..+-+-+=. -...+-+-|. ++ .-+.+.+.++++..+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCCC
Confidence 4789999999999999998876655443332211 1223333332 11 1466777888887764
No 240
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.05 E-value=8.6 Score=29.08 Aligned_cols=40 Identities=13% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHH
Q 019327 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 104 (342)
Q Consensus 60 ~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~ 104 (342)
++.++|++.|+.|.. + +++...+ ...+.++++|+|...-.
T Consensus 29 ~~~~~l~~~l~~f~p-~-kv~~l~~---~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNP-L-KVKPLYG---KQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH----S-EEEEEEE---TTEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCC-c-eeEECcC---CCCCcEEEEEEECCChH
Confidence 456899999999997 4 5666666 23578999999985443
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.51 E-value=18 Score=23.87 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCcEEEEEecCC
Q 019327 157 DRLKELFAHHGKITKVVIPPA 177 (342)
Q Consensus 157 ~~l~~~f~~~G~i~~v~i~~~ 177 (342)
++|+++|+..|+|.-+.|-.-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999987766543
No 242
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=60.48 E-value=36 Score=22.69 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=39.6
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHH-hhC
Q 019327 15 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVT-KIG 73 (342)
Q Consensus 15 V~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~-~~G 73 (342)
..|.+.++|.+.++.|...-+.-....+.....-.+|+|+..+.....+.+.+-+. ..+
T Consensus 10 ~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~ 69 (76)
T PF05036_consen 10 GSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAG 69 (76)
T ss_dssp EEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHT
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhC
Confidence 46899999999999876442222215666667778999998887777677776666 444
No 243
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.71 E-value=44 Score=23.62 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=40.8
Q ss_pred EEEecCCCCCCHHHHHHHHhc-CC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 145 LYVKNLPKDITQDRLKELFAH-HG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 145 l~v~~l~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
-|+--++...+..+|++.+++ |+ .|.+|..+....+ ..-|||++..-++|.....++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999999877 55 4667765554422 457999999999988876654
No 244
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.54 E-value=50 Score=22.91 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=41.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhc-CC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 144 ALYVKNLPKDITQDRLKELFAH-HG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
+-|+-.++...+..+|++.+++ |+ .|.+|..+.-+.. ..-|||++..-+.|.....++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHhh
Confidence 3455567889999999988876 45 4666655544321 457999999988888776654
No 245
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=58.33 E-value=19 Score=29.25 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=36.6
Q ss_pred ceEEEEecCCCCCCHHHHH---HHHhcCCcEEEEEecCCCCC-CCCCceEEEEeCCHHHHHHHHHh
Q 019327 142 VKALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~-~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
.+++|.. .|+++|. ++-+ |.+..|..-..... ...+|..||+|.+.+.|.+.++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4666665 4554444 4433 67777766554333 23489999999999999987765
No 246
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=56.40 E-value=17 Score=31.99 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=12.6
Q ss_pred eEEEEe-cCCCCCCHHHHHHHHh
Q 019327 143 KALYVK-NLPKDITQDRLKELFA 164 (342)
Q Consensus 143 ~~l~v~-~l~~~~~~~~l~~~f~ 164 (342)
..|-|+ +|...+|+.+-.++..
T Consensus 112 ~rIevGyGLEg~ltD~~a~~iIr 134 (271)
T COG1512 112 VRIEVGYGLEGVLTDAQAGRIIR 134 (271)
T ss_pred EEEEEecCcccccChHHHHHHHH
Confidence 444443 6777777766555543
No 247
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.46 E-value=39 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.420 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhCCCeEEEEE
Q 019327 62 EDDMRKAVTKIGPGVISIEL 81 (342)
Q Consensus 62 e~~l~~~f~~~G~~v~~v~~ 81 (342)
-++|+++|+.+|+ |.-+.+
T Consensus 8 ~~~iR~~fs~lG~-I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGE-IAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCc-EEEEEE
Confidence 3689999999999 765555
No 248
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.10 E-value=31 Score=30.07 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=26.3
Q ss_pred CeEEEcCCCCC------------CCHHHHHHHHHhhCCCeEEEEEe
Q 019327 49 HRLFIGNVPRN------------WGEDDMRKAVTKIGPGVISIELV 82 (342)
Q Consensus 49 ~~l~v~nl~~~------------~te~~l~~~f~~~G~~v~~v~~~ 82 (342)
.+|++..||-. -+++-|+..|+.||+ |..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~-ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGE-IRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhcc-ceecCCc
Confidence 48888888853 357789999999999 8887773
No 249
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=50.42 E-value=26 Score=23.62 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=45.1
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 63 ~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
++|.+-|...|-.|..|.-+.. ..+......-||+.+...+...++. + + .+.+..|.|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~-~~~k~pl~mf~veL~p~~~~k~i~~-I--k--~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHS-RNTKKPLNMFFVELEPKPNNKEIYK-I--K--TLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEcccc-CCCCCCceEEEEeeccCccccceee-h--H--hhCCeEEEEecCCCC
Confidence 5788888888877888887777 4466677889999887766443322 2 2 567777888876554
No 250
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=48.83 E-value=70 Score=20.50 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=40.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCH----HHHHHHHHh
Q 019327 144 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER----SSAMKALKN 203 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~----~~a~~a~~~ 203 (342)
++.|.|+.-.--...|++.+...-.|.++.+-.. .+.+-|+|... ++..++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4667777766667889999998888999888766 57888999755 455555554
No 251
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=48.67 E-value=80 Score=24.88 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHH
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 110 (342)
.-|+-.++..++..+|++.++. |+-.|..|..+.-+ .+ .--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p--~g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP--DG--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC--CC--ceEEEEEECCCCcHHHHHH
Confidence 3445557889999999999997 55556676666542 22 2359999988777655433
No 252
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.45 E-value=1.5e+02 Score=26.57 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCC
Q 019327 331 DNGRGRSRYNPY 342 (342)
Q Consensus 331 ~~~~g~~r~~py 342 (342)
+.+.|-+|++||
T Consensus 88 ~fGgGyN~~~~~ 99 (362)
T KOG3875|consen 88 GFGGGYNRFGPY 99 (362)
T ss_pred ccCccccccccc
Confidence 334444455544
No 253
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.33 E-value=30 Score=29.42 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=29.1
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 79 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v 79 (342)
....+.+||+-|+|..+|++.|.++.++.|- +..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~-vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGH-VQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhh-hhhe
Confidence 3445679999999999999999999999985 4443
No 254
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.49 E-value=16 Score=33.32 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD-PQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~-~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
...|.|.+||+..++++|.+....|-+.|....+... ......-...|||.|...++.......+++.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 4678999999999999999888877654544444422 1111123467999999999988888877774
No 255
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.48 E-value=52 Score=26.29 Aligned_cols=6 Identities=33% Similarity=0.036 Sum_probs=2.2
Q ss_pred CHHHHH
Q 019327 193 ERSSAM 198 (342)
Q Consensus 193 ~~~~a~ 198 (342)
+...|+
T Consensus 60 TVscaE 65 (179)
T KOG2567|consen 60 TVSCAE 65 (179)
T ss_pred eeeHHH
Confidence 333333
No 256
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.37 E-value=1.1e+02 Score=21.30 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=41.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 51 LFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
-|+=.++.+++..+|++.++. |+-.|.+|..+.-+ ...--|||++...++|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~----~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP----RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----CCceEEEEEECCCCcHHHHHHh
Confidence 444457889999999999998 55557777776652 2234699999988888876544
No 257
>PRK12757 cell division protein FtsN; Provisional
Probab=44.34 E-value=49 Score=28.83 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=44.3
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEee
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 83 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~ 83 (342)
-|.+.+.|+...+.|. ..|....|.....-++|+||-+......+.+.+-++..| +..|.++.
T Consensus 191 AF~~~~nAe~L~arL~---~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G--~~~~iiva 253 (256)
T PRK12757 191 SFKGTEQAESVRAQLA---FAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAG--HSGCIPLA 253 (256)
T ss_pred eCCCHHHHHHHHHHHH---hcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcC--CCCeEEec
Confidence 5999999999999886 334444555555567899998776666677777777776 45555543
No 258
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=44.32 E-value=1.1e+02 Score=29.85 Aligned_cols=72 Identities=10% Similarity=0.197 Sum_probs=51.2
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCe--------------------------EEEEee-cccCCeEEEcCCCCCCCHHH
Q 019327 12 YAFVTFRTKELASQAIEELNSCELKGK--------------------------KIKCSA-AQAKHRLFIGNVPRNWGEDD 64 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~~~g~~~~g~--------------------------~i~v~~-~~~~~~l~v~nl~~~~te~~ 64 (342)
-|||++++.+..+...+.|+-.-+..- .|.++. ......||+.+|+.+..++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 599999999999999998886544332 222221 11335788889988888777
Q ss_pred HHHHHHhhCCCeEEEEEeeC
Q 019327 65 MRKAVTKIGPGVISIELVKD 84 (342)
Q Consensus 65 l~~~f~~~G~~v~~v~~~~~ 84 (342)
=.++....-. .+.+++++.
T Consensus 318 Q~~~irsipG-lEna~i~rp 336 (621)
T COG0445 318 QEQIIRSIPG-LENAEILRP 336 (621)
T ss_pred HHHHHHhCcc-cccceeecc
Confidence 7777777655 788888775
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.87 E-value=98 Score=21.88 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=42.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 51 LFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
-|+=.++.+++..+|++.++. |+-.|.+|..+..+ ...--|||++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~----~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP----KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----CCcEEEEEEeCCCCcHHHHHHh
Confidence 344457889999999999998 56557777777652 2234699999999998887554
No 260
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=43.23 E-value=8.9 Score=20.79 Aligned_cols=9 Identities=56% Similarity=1.379 Sum_probs=1.5
Q ss_pred CCCCCCCCC
Q 019327 334 RGRSRYNPY 342 (342)
Q Consensus 334 ~g~~r~~py 342 (342)
||++||-||
T Consensus 16 rgg~rfEPY 24 (30)
T PF11532_consen 16 RGGNRFEPY 24 (30)
T ss_dssp -------SS
T ss_pred cCCcccccc
Confidence 455677777
No 261
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=42.48 E-value=5 Score=38.29 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=49.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
.+.||+.|+++.++-++|..+++.+-- +..+-+... ........+.+|+|+..-....|+.+|++.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~-~lrfals~~-~aek~~~r~lwv~fk~~~ni~~a~~aLn~i 296 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPG-FLRFALSTI-NAEKNFERRLWVTFKRGTNIKEACWALNGI 296 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCch-heeeeccCc-hHHHHHHHHhhHhhccccchHHHHHHhhhc
Confidence 468999999999999999999998765 565555433 233345567899998777777777777764
No 262
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.36 E-value=1.1e+02 Score=21.18 Aligned_cols=46 Identities=9% Similarity=0.259 Sum_probs=34.1
Q ss_pred HhCCCccC-CeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 29 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 29 ~~~g~~~~-g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
.+.+..++ ..+|-|..-+....-+|--|....++++|++.|+..|.
T Consensus 28 ~l~k~~L~dDde~aIfnI~gT~Sy~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 28 HLAKVDLNDDDELAIFNIEGTSSYYVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred HhcccccCCCCcEEEEEecCceeEEEEEEeccCCHHHHHHHHHHhCc
Confidence 45556564 45677766666666666677888999999999998886
No 263
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=41.04 E-value=1e+02 Score=30.11 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=55.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCCCCCCCCCC----C---------eeecCCCCCcc---cccccCceEEEEecCCCCCCHH
Q 019327 94 FAFIEYYNHACAEYSRQKMSNPKFKLDDNA----P---------TVSWADPRNAE---SSAASQVKALYVKNLPKDITQD 157 (342)
Q Consensus 94 ~afV~f~~~~~a~~a~~~l~~~~~~~~~~~----i---------~v~~~~~~~~~---~~~~~~~~~l~v~~l~~~~~~~ 157 (342)
-||+++.++...+-..+.|+.+++. .|.- - .+.++.....+ ..+......||+.+|+.++.++
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmy-sG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMY-SGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchh-cccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 6999999999988888887766332 1110 0 12222211111 1344457899999999999988
Q ss_pred HHHHHHhcCCcEEEEEecCC
Q 019327 158 RLKELFAHHGKITKVVIPPA 177 (342)
Q Consensus 158 ~l~~~f~~~G~i~~v~i~~~ 177 (342)
--.++....--++.+.|++.
T Consensus 317 VQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred HHHHHHHhCcccccceeecc
Confidence 87888877777888888764
No 264
>PF14893 PNMA: PNMA
Probab=37.87 E-value=34 Score=31.11 Aligned_cols=61 Identities=13% Similarity=0.289 Sum_probs=35.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHH
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 106 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~ 106 (342)
.+..+.|.|.+||.++++++|++.+.. +-+ +-..+|...-.......-.|+|+|...-+-.
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~p-lg~yrvl~~~f~~~~~~~aalve~~e~~n~~ 76 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSP-LGRYRVLGKMFRREENAKAALVEFAEDVNYS 76 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcc-cccceehhhHhhhhcccceeeeecccccchh
Confidence 355678999999999999999998865 211 2222221100000112346888887554443
No 265
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=37.82 E-value=2.4e+02 Score=28.86 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=11.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAH 165 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~ 165 (342)
...|||.+-.... +-|.++.++
T Consensus 667 ~d~Lfi~~~hp~~--e~i~~lysk 688 (931)
T KOG2044|consen 667 PDLLFISDKHPLF--EFILQLYSK 688 (931)
T ss_pred CceEEecCCCchH--HHHHHHHHh
Confidence 3557776554433 444444444
No 266
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=37.69 E-value=80 Score=22.27 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=33.3
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcC-------------CCCCCCHHHHHHHHHhhCC
Q 019327 8 EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGN-------------VPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 8 ~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~n-------------l~~~~te~~l~~~f~~~G~ 74 (342)
.|--||.|+|.-.++. .++. ..|-+| -....++.|||.+ +..+-|+|+|.+++..|..
T Consensus 6 nSd~y~VV~~~~~~~~-~~l~-~gGyEI-------VDK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 6 NSDNYCVVEFPPDAGH-PALA-RGGYEI-------VDKNARREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCceEEEEecCCCCc-cchh-cCCcEE-------eecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3567999999543333 3332 233332 2333456677765 2335677788887777754
No 267
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=37.44 E-value=1.3e+02 Score=20.32 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEec-CHHHHHHHHHHhCC
Q 019327 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY-NHACAEYSRQKMSN 114 (342)
Q Consensus 62 e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~~l~~ 114 (342)
-.++.+.|+.++-.+++| ..-|.......-.-||++. ..++.+++++.++.
T Consensus 14 L~~vL~~f~~~~iNlt~I--eSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHI--ESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEE--ECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 567788888888444444 4333333333445678887 55566677777654
No 268
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.60 E-value=17 Score=33.49 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=49.3
Q ss_pred CceEEEEecCCCCCCH--------HHHHHHHhc--CCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 141 QVKALYVKNLPKDITQ--------DRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~--------~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
..+.+|+.++....+. +++...|.. ++.+..+...++.....++|..|++|...+.+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3467888877766554 489999988 6777888888877566668999999999999999874
No 269
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.91 E-value=64 Score=26.41 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=33.9
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCccCCe-EEEEeecccCC
Q 019327 8 EAKGYAFVTFRTKELASQAIEELNSCELKGK-KIKCSAAQAKH 49 (342)
Q Consensus 8 ~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~-~i~v~~~~~~~ 49 (342)
++.+.--|.|.+.++|..|...++...|.++ .++.-.+++.+
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 4667788999999999999999999999988 66666655443
No 270
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.52 E-value=93 Score=21.81 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=24.0
Q ss_pred cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 168 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 168 ~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
.|.++....+- +||-|||=.+.+++.+|++.+..
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhcccc
Confidence 45566555442 89999999999999999987765
No 271
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.21 E-value=6 Score=37.76 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=51.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
..+|+|.|++++++-.+|..++..+--+..+.+..+.....-..+..|+|+---....|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4679999999999999999999988766666665554333335678899987766666666666554433
No 272
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.67 E-value=1.5e+02 Score=19.37 Aligned_cols=50 Identities=6% Similarity=0.087 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 61 te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
.-..|.++|.+.+-.|.++..... ........+|.+.. .+++.+++.|..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~---~~~~~~~v~i~v~~-~~~~~~~~~L~~ 63 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPS---KEEDNKILVFRVQT-MNPRPIIEDLRR 63 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecc---CCCCeEEEEEEEec-CCHHHHHHHHHH
Confidence 446788889998877777765443 22233445555542 223345554443
No 273
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=31.24 E-value=64 Score=26.32 Aligned_cols=56 Identities=7% Similarity=0.103 Sum_probs=37.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhh-CCCeEEEEEeeCCCCCC--CCceEEEEEecCHHHHHHHHHHh
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNAN--QNRGFAFIEYYNHACAEYSRQKM 112 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~-G~~v~~v~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l 112 (342)
+++|.. .|++.|.++..=. |. +..|.+-+. ..+ ..+|-.||+|.+.+.|..+++.-
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k-~~nv~mr~~--~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGK-GHNVKMRRH--GNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhccc-ceEeecccc--CCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 355555 4555555544322 55 777776554 233 56889999999999999987653
No 274
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=31.00 E-value=69 Score=23.37 Aligned_cols=6 Identities=50% Similarity=0.806 Sum_probs=2.2
Q ss_pred CCCCCC
Q 019327 314 SGRGGA 319 (342)
Q Consensus 314 g~~~g~ 319 (342)
||+++.
T Consensus 18 gG~~~y 23 (104)
T PF12764_consen 18 GGRPGY 23 (104)
T ss_pred CCCCCC
Confidence 333333
No 275
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.96 E-value=40 Score=28.74 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=28.2
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITK 171 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 171 (342)
......+||+-|+|..+|++.|..+.++.|.+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 3344589999999999999999999999885543
No 276
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=30.15 E-value=1.7e+02 Score=19.67 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=35.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCH
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 194 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~ 194 (342)
.+|+|.++.-.-=...+.+.......|..+.+..+ ++.+.|+|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCC
Confidence 46677766655556778888888877888888777 56799999883
No 277
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.10 E-value=1.9e+02 Score=22.77 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=36.6
Q ss_pred EEEecCCCCCCHHHHHHHHhc-CC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHh
Q 019327 145 LYVKNLPKDITQDRLKELFAH-HG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 145 l~v~~l~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
.|+--++...+..+|++.+++ |+ .|..|..+.-..+ ..-|||++....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g---~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG---LKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHh
Confidence 344456778899999988876 54 4556654443322 34789999887776555443
No 278
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.90 E-value=92 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=23.5
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 76 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 76 v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
|.++....+ .+||-|||=.+.+++..|++.+..
T Consensus 34 I~Si~~~~~------lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 34 IYSIFAPDS------LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp --EEEE-TT------STSEEEEEESSHHHHHHHHTT-TT
T ss_pred eEEEEEeCC------CceEEEEEeCCHHHHHHHHhcccc
Confidence 666655433 689999999999999999876553
No 279
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.68 E-value=67 Score=21.75 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=20.9
Q ss_pred ceEEEEeCCHHHHHHHHHhcCCceeC
Q 019327 185 RYGFVHFAERSSAMKALKNTEKYEID 210 (342)
Q Consensus 185 g~~fV~f~~~~~a~~a~~~l~~~~~~ 210 (342)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46899999999999998887765443
No 280
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=29.48 E-value=81 Score=22.59 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=34.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCC---CCC------CceEEEEEecCHHH
Q 019327 51 LFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQN---ANQ------NRGFAFIEYYNHAC 104 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~---~g~------~~g~afV~f~~~~~ 104 (342)
.+.=.++.++|..||+++++. |+-.|.+|..+.-+.. .+. ..--|+|++...+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 444467889999999999987 6655667666554100 111 11358888876643
No 281
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.62 E-value=1.7e+02 Score=19.00 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 61 te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
.-.+|.++|.+.+-.|..+.....+ .. ..+...+.+...++.+++++.|...
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~--~~-~~~~~~i~v~~~~~~~~~~~~L~~~ 65 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIR--EG-IGGILRISFKTQEDRERAKEILKEA 65 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEee--cC-CcEEEEEEECCHHHHHHHHHHHHHc
Confidence 4567889999998777777655531 11 2455667777666777777776654
No 282
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.57 E-value=81 Score=29.00 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=47.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCc-EEEEEecCCCCC--CCCCceEEEEeCCHHHHHHHHHhcCCceeC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEID 210 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~--~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~ 210 (342)
..+.|.+||...++++|.+....|-. +....+...... ..-.+.+||.|...++...-...++++.+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 66889999999999999888877643 333333322221 112568899999999987777777776543
No 283
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=28.33 E-value=5.2e+02 Score=24.74 Aligned_cols=62 Identities=18% Similarity=0.365 Sum_probs=37.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhh---CCCeEEEEEeeCCCCCCCCceEEEE-EecCHHHHHHHHHHh
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKI---GPGVISIELVKDPQNANQNRGFAFI-EYYNHACAEYSRQKM 112 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~---G~~v~~v~~~~~~~~~g~~~g~afV-~f~~~~~a~~a~~~l 112 (342)
..++|.|..||..++.+++.+..... ++ +..|.=++| .+.+ .+..|| +++....++..++.|
T Consensus 224 ~~~~i~ItElP~~~~~~~~~e~i~~l~~~~k-~~~I~~~~D--~s~~-~~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 224 GRNTIEITELPYQVNKAKLKEKIAELVKDKK-IEGISDVRD--ESDR-EGIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CCceEEEEeCCCcccHHHHHHHHHHHHhcCC-Ccccceeee--ccCC-CceEEEEEECCCccHHHHHHHH
Confidence 34789999999999999988876543 22 333444455 2222 245554 555555555555443
No 284
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.07 E-value=2.8e+02 Score=20.99 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhhCC---CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHH
Q 019327 59 NWGEDDMRKAVTKIGP---GVISIELVKDPQNANQNRGFAFIEYYNHACAEY 107 (342)
Q Consensus 59 ~~te~~l~~~f~~~G~---~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~ 107 (342)
.++.+||++-+++.=. ++..+.=.+.....|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4788899888876322 12222223333567889999988 667666654
No 285
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.01 E-value=1.6e+02 Score=21.66 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 157 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
.+|..++.+.| |.+-.|..+..+. .-|+++++.|.++.-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHh
Confidence 46777888877 6665665554332 3699999997666555544
No 286
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=26.41 E-value=81 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCCC
Q 019327 325 GGRRSTDNGRGRSR 338 (342)
Q Consensus 325 gg~g~~~~~~g~~r 338 (342)
||+|+.+|++.++|
T Consensus 257 gGGgS~GGGGasg~ 270 (271)
T COG1512 257 GGGGSSGGGGASGS 270 (271)
T ss_pred CCCCCCCCCCCCCC
Confidence 33444444444433
No 287
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=26.16 E-value=63 Score=22.07 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=27.3
Q ss_pred eEEEEeCCHHHHHHHHHHhCC-CccCCeEEEEeecccCCeEEEc
Q 019327 12 YAFVTFRTKELASQAIEELNS-CELKGKKIKCSAAQAKHRLFIG 54 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~~~g-~~~~g~~i~v~~~~~~~~l~v~ 54 (342)
-.-|.|.+.++|+.+++.|.- ..+....++++.....+.|.|.
T Consensus 4 ~l~i~f~s~~~A~ii~~sL~~d~e~~~~~~~~~~~~~~~~L~i~ 47 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSLKPDKELKPSRVKRELSVDGNKLVIT 47 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHH-SS-SSEEEEEEESSEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCCCCCCcEEEEEEEeCCEEEEE
Confidence 456899999999999887653 3445555666655555666553
No 288
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=26.07 E-value=3.1e+02 Score=21.10 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=40.6
Q ss_pred CCHHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 154 ITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 154 ~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
.+-+.+.+..++-| .++++..- .+...|.|++.++-.+|.+.|....-++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45677888888766 34444443 3478899999999999988877654445566555554
No 289
>PHA01632 hypothetical protein
Probab=25.64 E-value=88 Score=20.00 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=18.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTK 71 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~ 71 (342)
.|.|..+|..-||++|+..+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 4667899999999999987754
No 290
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=25.50 E-value=2.1e+02 Score=19.05 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecC---HHHHHHHHHHhCC
Q 019327 61 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN---HACAEYSRQKMSN 114 (342)
Q Consensus 61 te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~---~~~a~~a~~~l~~ 114 (342)
.-.++.+.|+.++-.+.+|.-... ......-.-||++.. ....+.+++.+..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~--~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPS--RKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeec--CCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 356788899999866777744433 333445567888874 5666677777654
No 291
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.37 E-value=13 Score=34.62 Aligned_cols=79 Identities=9% Similarity=-0.034 Sum_probs=58.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
.+.++..++...+++++.-.|+-|+.|..+.+.+...++.-.-.+||+-.+. ++..+|..+.-..+.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchh
Confidence 3456777888899999999999999999888877666555566788877654 455566665556677777888777643
No 292
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=25.12 E-value=3.1e+02 Score=26.47 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=20.2
Q ss_pred ccceEEEEeC-CHHHHHHHHHHhCC-----CccCCeEEEEeec
Q 019327 9 AKGYAFVTFR-TKELASQAIEELNS-----CELKGKKIKCSAA 45 (342)
Q Consensus 9 ~~G~afV~f~-~~e~A~~a~~~~~g-----~~~~g~~i~v~~~ 45 (342)
+.|-|.|.|+ ++|+-....+.+.. ..-.+.+..|+++
T Consensus 197 ~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS 239 (513)
T PF14134_consen 197 SNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFS 239 (513)
T ss_pred cCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEec
Confidence 4589999999 66654433332221 1223556666544
No 293
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.88 E-value=2.4e+02 Score=22.31 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 019327 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 73 G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
+.+|.+|.+... ..||.||+....+++..+++.+.
T Consensus 33 ~~~i~~i~vp~~------fpGYVfVe~~~~~~~~~~i~~v~ 67 (153)
T PRK08559 33 NLPIYAILAPPE------LKGYVLVEAESKGAVEEAIRGIP 67 (153)
T ss_pred CCcEEEEEccCC------CCcEEEEEEEChHHHHHHHhcCC
Confidence 433555555433 58999999998888888876554
No 294
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=24.57 E-value=3.1e+02 Score=21.94 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=35.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe--ecccCCeEEEcCCCCCCCHHHHHHH--HHhhCCCeEEEEEee
Q 019327 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKCS--AAQAKHRLFIGNVPRNWGEDDMRKA--VTKIGPGVISIELVK 83 (342)
Q Consensus 11 G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~--~~~~~~~l~v~nl~~~~te~~l~~~--f~~~G~~v~~v~~~~ 83 (342)
.-.||.|++.++|.++++. |..+. .|.|- ...+.++.+..++ .++++|+..+ +...|- -..+..+.
T Consensus 80 ~~vlvl~~~~~da~~l~~~--g~~i~--~iNiG~m~~~~g~~~i~~~v--~l~~ed~~~l~~l~~~Gv-~v~~q~vP 149 (158)
T PRK09756 80 QKIFLICRTPQTVRKLVEG--GIDLK--DVNVGNMHFSEGKKQISSKV--YVDDQDLADLRFIKQRGV-NVFIQDVP 149 (158)
T ss_pred ceEEEEECCHHHHHHHHHc--CCCCC--EEEECCCcCCCCCEEEecce--eeCHHHHHHHHHHHHcCC-EEEEEECc
Confidence 3478999999999999873 33322 33332 2233444444454 4566666543 334464 33444444
No 295
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=5.1e+02 Score=25.75 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC--C----CCCCCCCCCeeecCCCCCcc
Q 019327 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN--P----KFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 62 e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~--~----~~~~~~~~i~v~~~~~~~~~ 135 (342)
.++|.+.|..-.- +.+|.+.-. ||-.+.+....-++...+.+.. . .....++.|.|++..+...
T Consensus 60 A~~i~~~l~~~~~-~~~veiaGp--------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt- 129 (577)
T COG0018 60 AEEIAEKLDTDEI-IEKVEIAGP--------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT- 129 (577)
T ss_pred HHHHHHhccccCc-EeEEEEcCC--------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC-
Confidence 3445555544433 667766432 4555555554555555454442 1 1122567888888777643
Q ss_pred cccccCceEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEecCCC
Q 019327 136 SSAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAK 178 (342)
Q Consensus 136 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i~~~~ 178 (342)
.-++|+.|-..+-=+-|..+++..| .|+....+.|.
T Consensus 130 -------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 130 -------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred -------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 6689999988888889999998887 57666665553
No 296
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=24.35 E-value=2.8e+02 Score=19.99 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=42.2
Q ss_pred eEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 38 KKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 38 ~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
..|.|...-....|.- .+-+..++..|..-|..-|..-+...+-+| -=+.+|.|+|.+.+.+..|.+.|-.
T Consensus 3 ~~i~vf~nl~t~QVlY-S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD-----~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 3 PQIYVFRNLETNQVLY-SQTPNLDNNQILKQFPFPGKKNKPPSLRKD-----YWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred CeEEEEeecccCCEEE-ecCcccChhHHHHhccCCCcccCCchhccc-----cceEeEEEECCChHHHHHHHHHHHH
Confidence 3444443333334433 455566777776666555542233333333 2357999999999999999887653
No 297
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=24.14 E-value=4.2e+02 Score=23.56 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
++|+..+...+-+...+++-++++|.+-.++.++.-|... .+.+.+++-+||+++.... .-+.|=|+-
T Consensus 75 tKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~---------~~~~~~etw~alE~l~~~G---~ir~IGVSN 142 (280)
T COG0656 75 TKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN---------KYVVIEETWKALEELVDEG---LIRAIGVSN 142 (280)
T ss_pred eecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc---------cCccHHHHHHHHHHHHhcC---CccEEEeeC
Confidence 4677777777777888888889999766777777764221 2222678888998876532 123333332
Q ss_pred CCCCCccc-----ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEec
Q 019327 129 ADPRNAES-----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175 (342)
Q Consensus 129 ~~~~~~~~-----~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~ 175 (342)
-....... ......+.|- +.......+|.+++.+.|......-+
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe---~hp~~~q~el~~~~~~~gI~v~AysP 191 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIE---YHPYLRQPELLPFCQRHGIAVEAYSP 191 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEE---eccCCCcHHHHHHHHHcCCEEEEECC
Confidence 11111110 0001112222 34456666699999998866655443
No 298
>PRK11901 hypothetical protein; Reviewed
Probab=24.00 E-value=1.3e+02 Score=27.08 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=38.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceE--EEEeCCHHHHHHHHHhcCC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~--fV~f~~~~~a~~a~~~l~~ 206 (342)
..+|-|..+ .+++.|..|..+++ +..+.|......+. .=|. +=.|.+.++|+.|+..|..
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 456666544 45788888888775 45555554332222 1233 3368999999999999864
No 299
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.78 E-value=2.1e+02 Score=18.49 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHh
Q 019327 156 QDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 156 ~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
-.+|-++|.+.| .|.++.+..... +....+.+++.+.|.++++.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH
Confidence 367788887776 577877654322 35666677777777777775
No 300
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.44 E-value=1.5e+02 Score=21.54 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=25.4
Q ss_pred cCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCC
Q 019327 54 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 86 (342)
Q Consensus 54 ~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~ 86 (342)
.|++.+..-+-+++.|++++. |+--.+...|.
T Consensus 28 ~~is~e~alk~vk~afk~~mn-I~GSwI~~~pe 59 (103)
T COG5584 28 KNISRENALKVVKEAFKQFMN-IKGSWIVYEPE 59 (103)
T ss_pred cccChhHHHHHHHHHhcccCC-cceeEEEEecc
Confidence 367777778889999999999 98877776643
No 301
>PRK10927 essential cell division protein FtsN; Provisional
Probab=23.30 E-value=1.5e+02 Score=26.59 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=38.6
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEE
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 81 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~ 81 (342)
-|.+.+.|+.....|. +.|-..+|.....-++|+||-+.....-+.+++-+...| |..|.+
T Consensus 254 SF~n~~nAE~LrAkLa---~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aG--is~ci~ 314 (319)
T PRK10927 254 SFRGAEQAETVRAQLA---FEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAG--HTNCIR 314 (319)
T ss_pred ccCCHHHHHHHHHHHH---HcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCC--CCceee
Confidence 4899999999998765 456566665444456788875554444444555555566 555544
No 302
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=23.02 E-value=1.4e+02 Score=19.90 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=24.9
Q ss_pred eCCHHHHHHHHHHhCC---CccCCeEEEEeecccCCeEEEcCCC
Q 019327 17 FRTKELASQAIEELNS---CELKGKKIKCSAAQAKHRLFIGNVP 57 (342)
Q Consensus 17 f~~~e~A~~a~~~~~g---~~~~g~~i~v~~~~~~~~l~v~nl~ 57 (342)
|=+..++...++.++- ..|.+..|.|...+.....||.++|
T Consensus 4 ~LSkKe~k~~~~k~~~~ygIdi~~~~vEI~~~kk~~~yyi~~~p 47 (65)
T PF09183_consen 4 FLSKKEIKEIKEKIKEKYGIDISGEKVEIGKEKKFSIYYIDGVP 47 (65)
T ss_dssp E--HHHHHHHHHHHHT-TT---TT---EEEE-SS-EEEEETTEE
T ss_pred cccHHHHHHHHHHHHHHhCcCCCccceeeeeccceEEEEECCch
Confidence 5577888888877764 6777889999998888888888776
No 303
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=22.88 E-value=1.6e+02 Score=25.96 Aligned_cols=48 Identities=29% Similarity=0.316 Sum_probs=36.4
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
.|.+.+.|..|.++|- ..+..+.|-+++.+. -.+.+++|.++++.+|.
T Consensus 251 sfcs~~~a~~af~eLI-~d~k~kyIlLSYNne----------g~~s~e~i~eiL~k~G~ 298 (330)
T COG3392 251 SFCSRKQATQAFEELI-SDAKFKYILLSYNNE----------GLMSEEEILEILEKYGK 298 (330)
T ss_pred hhhHHHHHHHHHHHHH-hhcCccEEEEecCcc----------ccccHHHHHHHHHhcCc
Confidence 4778888998888764 345566666666543 45789999999999998
No 304
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=22.79 E-value=3.7e+02 Score=21.28 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=35.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE--eecccCCeEEEcCCCCCCCHHHHHHH--HHhhCCCeEEEEEee
Q 019327 11 GYAFVTFRTKELASQAIEELNSCELKGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKA--VTKIGPGVISIELVK 83 (342)
Q Consensus 11 G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v--~~~~~~~~l~v~nl~~~~te~~l~~~--f~~~G~~v~~v~~~~ 83 (342)
--.||-|++.++|.++++. |..+. .|.| -...+.++.+..++ .++++|+..+ +...|- -..+..+.
T Consensus 76 ~~v~vl~k~~~da~~l~~~--g~~i~--~iniG~~~~~~g~~~v~~~v--~l~~~e~~~l~~l~~~Gv-~v~~q~vP 145 (151)
T TIGR00854 76 QTIFLLFRNPQDVLTLVEG--GVPIK--TVNVGGMHFSNGKKQITKKV--SVDDQDITAFRFLKQRGV-KLFLRDVP 145 (151)
T ss_pred ceEEEEECCHHHHHHHHHc--CCCCC--EEEECCcccCCCCEEEecce--eeCHHHHHHHHHHHHcCC-EEEEEECc
Confidence 4588999999999999873 33222 2332 12333444444444 4566666543 334464 33344433
No 305
>PRK11901 hypothetical protein; Reviewed
Probab=22.71 E-value=1.7e+02 Score=26.49 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEE--EecCHHHHHHHHHHhCC
Q 019327 55 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFI--EYYNHACAEYSRQKMSN 114 (342)
Q Consensus 55 nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV--~f~~~~~a~~a~~~l~~ 114 (342)
.|--..+++.|..|..+++ +..+++.+. ...|+. -|..| .|.+.++|..|++.|-.
T Consensus 249 QL~Aas~~~~L~~f~~~~~--L~~~~VYqT-~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN--LSHYHVYET-KRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred EeecCCCHHHHHHHHHHcC--cCceEEEEE-EECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3334456888888888876 555666665 334433 24333 57899999999998765
No 306
>PF14893 PNMA: PNMA
Probab=22.21 E-value=91 Score=28.40 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=42.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-CCcEEEEEecCC---CCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 142 VKALYVKNLPKDITQDRLKELFAH-HGKITKVVIPPA---KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~v~i~~~---~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.+.|.|.+||.++++++|++.+.. +-.+-..+|... ++.+ ...++|+|...-+-...=..+.+ .|..-+|-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv 92 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYSLIPREIPG---KGGPWRVV 92 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchhhCchhcCC---CCCceEEE
Confidence 377999999999999999888754 212222222211 1111 35788888665443322222222 24455555
Q ss_pred eccCCC
Q 019327 218 LAKPQA 223 (342)
Q Consensus 218 ~a~~~~ 223 (342)
+..+..
T Consensus 93 ~~p~~~ 98 (331)
T PF14893_consen 93 FKPPAP 98 (331)
T ss_pred ecCCCC
Confidence 544433
No 307
>COG1438 ArgR Arginine repressor [Transcription]
Probab=22.03 E-value=4.1e+02 Score=21.13 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=18.2
Q ss_pred CceEEEEeCCHHHHHHHHHhcC
Q 019327 184 SRYGFVHFAERSSAMKALKNTE 205 (342)
Q Consensus 184 ~g~~fV~f~~~~~a~~a~~~l~ 205 (342)
...+||...+.+.|+...+.+.
T Consensus 126 dDTilVi~r~~~~a~~l~~~l~ 147 (150)
T COG1438 126 DDTILVICRSEETAKELYEELL 147 (150)
T ss_pred CCeEEEEecCchhHHHHHHHHH
Confidence 3589999999999998887654
No 308
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.68 E-value=3.8e+02 Score=20.59 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 60 ~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
.+-..|.+.+++-|-.++++....+ -..|.|.+.++-.+|.+.+..
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~---------~~~irf~~~~~Ql~Ak~vL~~ 95 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND---------SLLIRFDSPEQSAAAKEVLDR 95 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC---------EEEEEECCHHHHHHHHHHHHH
Confidence 5678889999988855556555333 688999999999999888876
No 309
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.54 E-value=73 Score=18.47 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHhcCC
Q 019327 153 DITQDRLKELFAHHG 167 (342)
Q Consensus 153 ~~~~~~l~~~f~~~G 167 (342)
++++++|++.|.+..
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 678899999998753
No 310
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=21.50 E-value=1.2e+02 Score=30.26 Aligned_cols=90 Identities=14% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHH-HhCCCCCCCCCCCCeeecCCCCCccccc
Q 019327 60 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ-KMSNPKFKLDDNAPTVSWADPRNAESSA 138 (342)
Q Consensus 60 ~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~-~l~~~~~~~~~~~i~v~~~~~~~~~~~~ 138 (342)
+...||++....+.. |.++-++-.+....-..-+|||.+++.......|. +|.. .+ |...-.++.+
T Consensus 508 igtaEIE~al~~hp~-VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~---~V--R~~igp~a~P------- 574 (626)
T KOG1175|consen 508 IGTAEIESALVEHPA-VAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVK---HV--RSVIGPYAVP------- 574 (626)
T ss_pred ecHHHHHHHHhhCcc-hhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHH---HH--HhhcCccccc-------
Confidence 568899999999998 98888876544444456689999976533333222 2211 00 0000111222
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhc
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAH 165 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~ 165 (342)
...++|.+||...+-...+....+
T Consensus 575 ---~~I~~v~~LPkTrSGKimRr~lrk 598 (626)
T KOG1175|consen 575 ---RLIVFVPGLPKTRSGKIMRRALRK 598 (626)
T ss_pred ---ceeEecCCCCccccchhHHHHHHH
Confidence 377889999998887666666554
No 311
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.01 E-value=2e+02 Score=18.88 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=24.2
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEeecccCC
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 49 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~ 49 (342)
+|.+.++...|+... ....+..+.+..++..+
T Consensus 9 ~F~~~~e~k~av~~y--ai~~~~~~~v~ksd~~r 40 (67)
T PF03108_consen 9 TFPSKEEFKEAVREY--AIKNGFEFKVKKSDKKR 40 (67)
T ss_pred EECCHHHHHHHHHHH--HHhcCcEEEEeccCCEE
Confidence 688999999999865 35567778887777443
No 312
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.97 E-value=3.2e+02 Score=19.45 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 62 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 62 e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
.+.++++++++|-.++++.+.. |..--...+++.+.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~-----G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL-----GEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec-----CCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 4567888888887678777754 44556889999999999887655443
No 313
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=20.53 E-value=2.7e+02 Score=18.40 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEe
Q 019327 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 99 (342)
Q Consensus 64 ~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f 99 (342)
||++.+.++.. |.++-++..+.......-.|||..
T Consensus 1 EIE~~l~~~~~-V~~~~V~~~~d~~~g~~l~a~vv~ 35 (73)
T PF13193_consen 1 EIESVLRQHPG-VAEAAVVGVPDEDWGERLVAFVVL 35 (73)
T ss_dssp HHHHHHHTSTT-EEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CHHHHHhcCCC-ccEEEEEEEEcccccccceeEEEe
Confidence 57788888877 998888655323333567899988
Done!