Query 019327
Match_columns 342
No_of_seqs 318 out of 2700
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.8E-41 9.7E-46 300.1 24.1 213 7-225 54-267 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 9.2E-40 3.2E-44 291.5 22.8 207 9-223 80-292 (292)
3 4f02_A Polyadenylate-binding p 100.0 3.1E-36 1.1E-40 256.1 17.4 173 45-225 12-184 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 6.6E-35 2.3E-39 237.9 19.3 166 49-221 1-166 (166)
5 2qfj_A FBP-interacting repress 100.0 1.3E-34 4.6E-39 246.5 21.5 175 47-225 27-208 (216)
6 1l3k_A Heterogeneous nuclear r 100.0 8.5E-35 2.9E-39 244.0 19.3 177 45-227 10-188 (196)
7 1fxl_A Paraneoplastic encephal 100.0 1.9E-34 6.5E-39 235.4 19.7 165 47-219 1-167 (167)
8 1b7f_A Protein (SXL-lethal pro 100.0 1E-34 3.6E-39 237.4 18.1 165 47-219 2-168 (168)
9 2cjk_A Nuclear polyadenylated 100.0 3.1E-35 1E-39 240.4 13.8 166 47-223 2-167 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 5.5E-33 1.9E-37 228.6 19.3 168 47-220 2-175 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 1.9E-32 6.6E-37 224.8 17.8 160 46-220 2-172 (172)
12 3tyt_A Heterogeneous nuclear r 100.0 5.8E-32 2E-36 227.7 16.5 162 47-219 3-204 (205)
13 1fje_B Nucleolin RBD12, protei 100.0 1.2E-32 4.1E-37 226.8 11.5 168 43-223 8-175 (175)
14 2yh0_A Splicing factor U2AF 65 100.0 1.2E-31 4E-36 225.2 17.5 167 47-224 3-196 (198)
15 2adc_A Polypyrimidine tract-bi 100.0 5.7E-31 1.9E-35 226.2 21.3 163 46-222 32-228 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 3.6E-31 1.2E-35 234.7 20.7 164 45-220 6-281 (282)
17 1qm9_A Polypyrimidine tract-bi 100.0 6.4E-31 2.2E-35 220.8 16.2 161 48-222 3-197 (198)
18 3sde_A Paraspeckle component 1 100.0 3.7E-30 1.3E-34 225.4 16.0 159 46-225 20-182 (261)
19 3smz_A Protein raver-1, ribonu 100.0 2.4E-29 8.2E-34 223.1 18.4 157 47-224 21-177 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-29 9.8E-34 223.5 17.4 163 44-225 37-200 (292)
21 1b7f_A Protein (SXL-lethal pro 99.9 2E-25 6.7E-30 182.1 16.0 126 2-129 37-168 (168)
22 2qfj_A FBP-interacting repress 99.9 2.3E-25 7.8E-30 189.3 16.6 130 1-134 61-207 (216)
23 4f02_A Polyadenylate-binding p 99.9 7.7E-26 2.7E-30 191.9 13.4 128 1-134 48-183 (213)
24 1fxl_A Paraneoplastic encephal 99.9 5.8E-25 2E-29 179.0 16.6 124 2-129 36-167 (167)
25 2g4b_A Splicing factor U2AF 65 99.9 2.1E-25 7.3E-30 182.6 11.2 122 4-130 45-172 (172)
26 1l3k_A Heterogeneous nuclear r 99.9 7E-25 2.4E-29 183.4 13.6 128 2-135 47-186 (196)
27 3md3_A Nuclear and cytoplasmic 99.9 1.4E-24 4.8E-29 176.5 14.6 121 6-130 37-165 (166)
28 2kn4_A Immunoglobulin G-bindin 99.9 5E-24 1.7E-28 172.2 16.9 145 78-225 2-153 (158)
29 2yh0_A Splicing factor U2AF 65 99.9 4.2E-25 1.4E-29 185.1 10.9 125 4-133 45-195 (198)
30 3nmr_A Cugbp ELAV-like family 99.9 3.6E-24 1.2E-28 175.7 15.0 126 2-130 37-175 (175)
31 2cjk_A Nuclear polyadenylated 99.9 1.2E-24 4.2E-29 177.2 11.5 125 1-132 36-166 (167)
32 1fje_B Nucleolin RBD12, protei 99.9 7.3E-25 2.5E-29 180.0 8.7 122 1-132 45-174 (175)
33 2kn4_A Immunoglobulin G-bindin 99.9 2.6E-23 8.8E-28 168.0 12.7 124 7-134 10-152 (158)
34 3sde_A Paraspeckle component 1 99.9 5.6E-23 1.9E-27 179.7 12.7 124 7-133 55-180 (261)
35 2i2y_A Fusion protein consists 99.9 2.2E-22 7.6E-27 161.0 12.9 128 88-223 9-149 (150)
36 3tyt_A Heterogeneous nuclear r 99.9 2E-22 6.8E-27 169.4 13.0 108 9-122 41-193 (205)
37 3pgw_A U1-A; protein-RNA compl 99.9 3.2E-22 1.1E-26 177.0 14.2 117 5-130 47-281 (282)
38 2i2y_A Fusion protein consists 99.9 4.3E-22 1.5E-26 159.2 12.8 117 6-132 9-148 (150)
39 4f25_A Polyadenylate-binding p 99.9 1.4E-22 4.8E-27 154.4 8.9 105 48-158 5-113 (115)
40 2adc_A Polypyrimidine tract-bi 99.9 1E-21 3.5E-26 168.3 15.1 114 10-132 72-228 (229)
41 1qm9_A Polypyrimidine tract-bi 99.9 1.4E-21 4.8E-26 163.7 12.9 114 10-132 41-197 (198)
42 4fxv_A ELAV-like protein 1; RN 99.9 3.6E-21 1.2E-25 142.3 10.4 81 141-221 18-98 (99)
43 3pgw_S U1-70K; protein-RNA com 99.9 9.6E-22 3.3E-26 183.1 9.0 86 139-224 99-184 (437)
44 2lea_A Serine/arginine-rich sp 99.8 5.3E-21 1.8E-25 149.7 8.5 126 93-225 5-130 (135)
45 2lxi_A RNA-binding protein 10; 99.8 1.2E-20 4E-25 137.4 7.9 84 142-225 1-86 (91)
46 4fxv_A ELAV-like protein 1; RN 99.8 3.6E-20 1.2E-24 136.9 10.0 80 48-131 19-98 (99)
47 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.4E-20 1.2E-24 150.5 10.3 130 97-226 11-156 (165)
48 1whw_A Hypothetical protein ri 99.8 3.6E-19 1.2E-23 131.8 13.9 86 140-225 6-91 (99)
49 3s8s_A Histone-lysine N-methyl 99.8 9.8E-20 3.3E-24 137.2 10.8 84 141-224 5-88 (110)
50 2lkz_A RNA-binding protein 5; 99.8 5.5E-20 1.9E-24 134.4 7.7 81 141-221 8-94 (95)
51 2dnz_A Probable RNA-binding pr 99.8 4.4E-19 1.5E-23 130.3 12.5 85 141-225 4-88 (95)
52 2dgs_A DAZ-associated protein 99.8 5.4E-19 1.8E-23 130.8 12.7 87 139-226 7-93 (99)
53 3md1_A Nuclear and cytoplasmic 99.8 3.4E-19 1.2E-23 127.4 10.9 82 142-223 1-82 (83)
54 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.9E-23 132.8 14.4 89 138-226 11-99 (115)
55 1x5u_A Splicing factor 3B subu 99.8 7E-19 2.4E-23 131.7 12.9 88 138-225 11-98 (105)
56 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.8E-19 9.6E-24 143.8 11.3 86 140-225 37-122 (156)
57 3q2s_C Cleavage and polyadenyl 99.8 4.1E-20 1.4E-24 157.7 6.5 83 141-223 67-151 (229)
58 2dnm_A SRP46 splicing factor; 99.8 5.8E-19 2E-23 131.7 11.8 87 139-225 10-96 (103)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.2E-19 1.1E-23 128.7 10.1 82 141-222 5-86 (87)
60 2cq0_A Eukaryotic translation 99.8 5.5E-19 1.9E-23 131.8 11.7 88 138-225 11-98 (103)
61 1x5t_A Splicing factor 3B subu 99.8 4.5E-19 1.5E-23 130.5 10.9 85 141-225 4-89 (96)
62 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.4E-23 131.8 14.7 87 137-224 12-98 (116)
63 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.6E-19 1.6E-23 131.9 10.8 88 139-226 9-96 (102)
64 2cph_A RNA binding motif prote 99.8 1.1E-18 3.9E-23 131.0 13.0 90 137-226 10-101 (107)
65 1x4h_A RNA-binding protein 28; 99.8 1.4E-18 4.8E-23 131.4 13.3 88 139-226 12-105 (111)
66 1x5s_A Cold-inducible RNA-bind 99.8 4.5E-19 1.5E-23 132.0 10.3 88 139-226 9-96 (102)
67 2lea_A Serine/arginine-rich sp 99.8 9.3E-20 3.2E-24 142.6 6.8 119 12-135 6-130 (135)
68 2x1f_A MRNA 3'-END-processing 99.8 9.7E-19 3.3E-23 128.7 11.8 83 142-224 2-84 (96)
69 2cpz_A CUG triplet repeat RNA- 99.8 5.2E-19 1.8E-23 134.7 10.6 89 138-226 21-109 (115)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.5E-19 1.9E-23 126.9 9.8 81 140-220 5-85 (85)
71 2fy1_A RNA-binding motif prote 99.8 1.6E-18 5.3E-23 132.1 12.8 85 140-225 5-89 (116)
72 4f25_A Polyadenylate-binding p 99.8 3.9E-19 1.3E-23 135.3 9.3 82 142-225 5-86 (115)
73 2do4_A Squamous cell carcinoma 99.8 1.1E-18 3.7E-23 129.5 11.5 86 138-224 13-98 (100)
74 2e5h_A Zinc finger CCHC-type a 99.8 1.4E-18 4.7E-23 127.3 11.8 83 138-220 12-94 (94)
75 1sjq_A Polypyrimidine tract-bi 99.8 6.8E-19 2.3E-23 130.0 10.1 83 45-135 13-95 (105)
76 1sjq_A Polypyrimidine tract-bi 99.8 5.4E-19 1.8E-23 130.5 9.5 81 140-226 14-96 (105)
77 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.7E-24 132.2 5.4 84 48-134 1-85 (91)
78 2cq3_A RNA-binding protein 9; 99.8 3.6E-18 1.2E-22 127.3 13.8 88 137-226 10-97 (103)
79 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 6.7E-23 136.1 12.9 89 137-225 37-125 (139)
80 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-18 5.8E-23 130.7 12.0 87 138-224 22-108 (110)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-18 5.1E-23 130.1 11.6 88 138-225 9-99 (106)
82 3s8s_A Histone-lysine N-methyl 99.8 6.7E-19 2.3E-23 132.6 9.6 83 46-132 4-86 (110)
83 2jrs_A RNA-binding protein 39; 99.8 1.1E-18 3.8E-23 131.1 10.8 86 138-223 22-107 (108)
84 2cqc_A Arginine/serine-rich sp 99.8 1.2E-18 4.1E-23 127.9 10.8 84 138-221 11-94 (95)
85 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-18 1.2E-22 127.4 13.2 87 138-226 11-97 (103)
86 1wi8_A EIF-4B, eukaryotic tran 99.8 3E-18 1E-22 127.9 12.9 85 139-225 12-97 (104)
87 2d9p_A Polyadenylate-binding p 99.8 1.3E-18 4.6E-23 129.7 10.9 87 138-226 11-97 (103)
88 2cpf_A RNA binding motif prote 99.8 7.6E-19 2.6E-23 129.8 9.5 86 141-226 4-92 (98)
89 1p27_B RNA-binding protein 8A; 99.8 1.1E-18 3.7E-23 130.9 10.4 86 138-223 19-104 (106)
90 3p5t_L Cleavage and polyadenyl 99.8 1.5E-19 5.1E-24 131.4 5.1 83 143-225 2-86 (90)
91 2dgx_A KIAA0430 protein; RRM d 99.8 2.5E-18 8.6E-23 126.4 11.8 82 140-224 7-92 (96)
92 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-18 8.2E-23 128.8 11.8 87 139-226 12-101 (105)
93 2lkz_A RNA-binding protein 5; 99.8 1.2E-19 4E-24 132.7 4.4 85 46-131 7-94 (95)
94 3r27_A HnRNP L, heterogeneous 99.8 1.4E-18 4.7E-23 127.0 10.1 79 139-223 18-98 (100)
95 2dng_A Eukaryotic translation 99.8 2.8E-18 9.7E-23 127.9 12.1 86 138-225 11-96 (103)
96 2cpe_A RNA-binding protein EWS 99.8 2.9E-18 1E-22 130.1 12.1 88 138-225 11-106 (113)
97 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.3E-23 130.1 9.8 86 140-226 7-94 (104)
98 4a8x_A RNA-binding protein wit 99.8 1.3E-18 4.4E-23 125.8 9.5 83 141-223 3-86 (88)
99 3ex7_B RNA-binding protein 8A; 99.8 2.4E-18 8.2E-23 133.2 11.3 88 138-225 18-105 (126)
100 3lqv_A PRE-mRNA branch site pr 99.8 5.7E-19 2E-23 134.5 7.6 105 45-168 5-109 (115)
101 2dh8_A DAZ-associated protein 99.8 1.6E-18 5.5E-23 129.7 9.7 87 138-225 12-98 (105)
102 2khc_A Testis-specific RNP-typ 99.8 2.9E-18 1E-22 131.1 11.1 83 138-220 36-118 (118)
103 2kxn_B Transformer-2 protein h 99.8 1.7E-18 5.8E-23 134.3 9.8 85 139-223 43-127 (129)
104 3ns6_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 131.6 6.0 82 142-223 6-94 (100)
105 1x4d_A Matrin 3; structural ge 99.8 1.9E-18 6.4E-23 127.6 9.5 80 140-225 13-95 (102)
106 2do0_A HnRNP M, heterogeneous 99.8 7E-18 2.4E-22 128.2 13.0 86 139-225 12-97 (114)
107 2dnz_A Probable RNA-binding pr 99.8 4.8E-18 1.6E-22 124.7 11.6 86 46-135 3-88 (95)
108 2cq1_A PTB-like protein L; RRM 99.8 8.6E-18 2.9E-22 124.1 12.8 82 139-226 12-95 (101)
109 3p5t_L Cleavage and polyadenyl 99.8 1.2E-18 3.9E-23 126.6 7.9 82 49-134 2-85 (90)
110 1wex_A Hypothetical protein (r 99.8 5.9E-18 2E-22 125.8 11.8 80 140-225 13-94 (104)
111 2rs2_A Musashi-1, RNA-binding 99.8 5.4E-18 1.8E-22 127.6 11.6 87 138-225 21-107 (109)
112 2la6_A RNA-binding protein FUS 99.8 2.7E-18 9.2E-23 127.0 9.7 83 138-220 9-99 (99)
113 2wbr_A GW182, gawky, LD47780P; 99.8 2.8E-18 9.6E-23 120.8 9.1 73 142-220 7-79 (89)
114 3ucg_A Polyadenylate-binding p 99.8 4.1E-18 1.4E-22 123.4 10.3 82 141-223 5-86 (89)
115 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-18 8.3E-23 124.1 9.0 83 46-132 4-86 (87)
116 1x4a_A Splicing factor, argini 99.8 1.2E-17 4.2E-22 125.7 13.1 84 138-224 18-101 (109)
117 2div_A TRNA selenocysteine ass 99.8 2.5E-18 8.4E-23 127.2 9.0 84 140-223 7-95 (99)
118 2cq4_A RNA binding motif prote 99.8 1.5E-18 5E-23 131.9 7.9 85 140-225 23-107 (114)
119 1x4b_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 130.0 10.3 87 138-225 23-109 (116)
120 2cpi_A CCR4-NOT transcription 99.8 6E-18 2.1E-22 127.8 11.1 86 139-224 12-103 (111)
121 1x4c_A Splicing factor, argini 99.8 1.3E-17 4.5E-22 125.3 12.9 79 140-225 13-96 (108)
122 2ywk_A Putative RNA-binding pr 99.8 4E-18 1.4E-22 125.1 9.8 82 139-221 13-94 (95)
123 2kt5_A RNA and export factor-b 99.8 2.5E-17 8.5E-22 127.1 14.7 87 138-225 31-117 (124)
124 1x5s_A Cold-inducible RNA-bind 99.8 6.2E-18 2.1E-22 125.8 10.9 86 45-134 9-94 (102)
125 1whw_A Hypothetical protein ri 99.8 4.7E-18 1.6E-22 125.7 10.1 87 45-135 5-91 (99)
126 1s79_A Lupus LA protein; RRM, 99.8 2.9E-18 1E-22 127.4 8.9 79 141-221 10-88 (103)
127 2hvz_A Splicing factor, argini 99.8 2.8E-18 9.4E-23 127.5 8.8 94 49-151 1-100 (101)
128 2m2b_A RNA-binding protein 10; 99.8 3E-18 1E-22 133.5 9.4 87 138-225 19-111 (131)
129 2dis_A Unnamed protein product 99.8 1.2E-17 4.1E-22 125.8 12.3 85 141-225 7-95 (109)
130 2dgu_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 124.0 12.6 80 139-226 8-87 (103)
131 2jwn_A Embryonic polyadenylate 99.7 2.4E-18 8E-23 132.9 8.5 85 139-224 33-117 (124)
132 3r27_A HnRNP L, heterogeneous 99.7 2.4E-18 8.2E-23 125.7 7.8 81 45-133 18-98 (100)
133 2ad9_A Polypyrimidine tract-bi 99.7 4.2E-18 1.4E-22 128.9 9.3 81 140-226 29-111 (119)
134 3n9u_C Cleavage and polyadenyl 99.7 3.7E-18 1.3E-22 136.7 9.4 83 141-223 54-138 (156)
135 2cqp_A RNA-binding protein 12; 99.7 2.5E-18 8.7E-23 126.9 7.8 85 139-223 12-96 (98)
136 2dgs_A DAZ-associated protein 99.7 9.8E-18 3.4E-22 124.0 11.0 86 45-135 7-92 (99)
137 2div_A TRNA selenocysteine ass 99.7 8E-18 2.8E-22 124.5 10.5 85 45-133 6-95 (99)
138 3ulh_A THO complex subunit 4; 99.7 7.8E-18 2.7E-22 126.4 10.6 81 139-220 26-106 (107)
139 2dgv_A HnRNP M, heterogeneous 99.7 5.8E-18 2E-22 123.4 9.6 84 139-224 5-88 (92)
140 1x5u_A Splicing factor 3B subu 99.7 7.9E-18 2.7E-22 125.9 10.4 86 45-134 12-97 (105)
141 2x1f_A MRNA 3'-END-processing 99.7 6.1E-18 2.1E-22 124.3 9.6 85 47-135 1-85 (96)
142 2cqg_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.5E-22 123.8 11.9 86 138-225 11-96 (103)
143 3s7r_A Heterogeneous nuclear r 99.7 9.8E-18 3.3E-22 120.9 10.3 80 139-219 8-87 (87)
144 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.6E-18 1.2E-22 126.5 8.1 84 138-223 15-99 (100)
145 2dnq_A RNA-binding protein 4B; 99.7 1.8E-17 6.1E-22 120.3 11.4 79 139-225 5-83 (90)
146 2cpf_A RNA binding motif prote 99.7 6.2E-18 2.1E-22 124.8 9.1 87 46-135 3-91 (98)
147 1wex_A Hypothetical protein (r 99.7 8.7E-18 3E-22 124.8 9.8 82 45-134 12-93 (104)
148 2mss_A Protein (musashi1); RNA 99.7 3.3E-18 1.1E-22 119.8 7.1 75 144-219 1-75 (75)
149 1p27_B RNA-binding protein 8A; 99.7 1.1E-17 3.7E-22 125.4 10.5 84 46-133 21-104 (106)
150 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.7E-18 1.6E-22 122.0 8.1 82 45-130 4-85 (85)
151 2dnm_A SRP46 splicing factor; 99.7 6.6E-18 2.3E-22 125.9 9.2 85 46-134 11-95 (103)
152 2dgt_A RNA-binding protein 30; 99.7 2.9E-17 9.8E-22 119.7 12.4 79 139-225 7-85 (92)
153 2hgn_A Heterogeneous nuclear r 99.7 1.2E-18 4.2E-23 136.2 5.1 124 93-224 2-125 (139)
154 2dhg_A TRNA selenocysteine ass 99.7 2.7E-17 9.3E-22 122.8 12.3 85 45-134 6-92 (104)
155 2ad9_A Polypyrimidine tract-bi 99.7 5E-18 1.7E-22 128.5 8.3 83 45-135 28-110 (119)
156 2err_A Ataxin-2-binding protei 99.7 9E-18 3.1E-22 126.4 9.6 85 137-223 24-108 (109)
157 1why_A Hypothetical protein ri 99.7 1.4E-17 4.8E-22 122.6 10.5 78 141-224 16-95 (97)
158 2dgv_A HnRNP M, heterogeneous 99.7 2.3E-17 7.8E-22 120.2 11.5 84 45-134 5-88 (92)
159 2cpz_A CUG triplet repeat RNA- 99.7 8.6E-18 2.9E-22 127.9 9.6 86 46-135 23-108 (115)
160 3md1_A Nuclear and cytoplasmic 99.7 1E-17 3.6E-22 119.6 9.4 81 49-133 2-82 (83)
161 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.3E-18 1.8E-22 137.6 8.8 116 15-134 11-154 (165)
162 1x4d_A Matrin 3; structural ge 99.7 1.9E-18 6.5E-23 127.5 5.6 81 45-133 12-93 (102)
163 1x5t_A Splicing factor 3B subu 99.7 5.9E-18 2E-22 124.4 8.3 86 46-135 3-89 (96)
164 2dgp_A Bruno-like 4, RNA bindi 99.7 1.7E-17 5.9E-22 124.3 11.0 87 46-134 11-98 (106)
165 1p1t_A Cleavage stimulation fa 99.7 2.4E-18 8.2E-23 128.5 6.2 86 140-225 6-91 (104)
166 2dgo_A Cytotoxic granule-assoc 99.7 1.4E-17 4.8E-22 126.7 10.6 86 46-135 13-98 (115)
167 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4E-22 123.8 9.8 86 43-133 12-97 (100)
168 2kxn_B Transformer-2 protein h 99.7 1.3E-17 4.3E-22 129.4 10.4 85 45-133 43-127 (129)
169 2cph_A RNA binding motif prote 99.7 2.3E-17 7.8E-22 123.8 11.5 88 45-135 12-100 (107)
170 2jrs_A RNA-binding protein 39; 99.7 1.5E-17 5.2E-22 124.9 10.5 84 46-133 24-107 (108)
171 2dnh_A Bruno-like 5, RNA bindi 99.7 2.5E-17 8.7E-22 123.1 11.6 84 46-134 13-99 (105)
172 1wf1_A RNA-binding protein RAL 99.7 2.1E-17 7.3E-22 124.6 11.1 96 120-224 6-102 (110)
173 2fc9_A NCL protein; structure 99.7 3.4E-17 1.2E-21 121.5 12.1 83 138-224 11-93 (101)
174 2cpj_A Non-POU domain-containi 99.7 2E-17 6.9E-22 122.3 10.7 82 138-225 11-92 (99)
175 1x4h_A RNA-binding protein 28; 99.7 1.5E-17 5.1E-22 125.7 10.2 89 45-135 12-104 (111)
176 1x4e_A RNA binding motif, sing 99.7 2.1E-18 7.1E-23 123.9 5.1 80 141-220 4-83 (85)
177 2cqc_A Arginine/serine-rich sp 99.7 9.1E-18 3.1E-22 123.2 8.7 83 45-131 12-94 (95)
178 2dgw_A Probable RNA-binding pr 99.7 1.4E-17 4.9E-22 121.1 9.6 82 139-223 7-88 (91)
179 2fy1_A RNA-binding motif prote 99.7 2E-17 6.7E-22 125.9 10.7 86 45-135 4-89 (116)
180 2cq0_A Eukaryotic translation 99.7 6.5E-18 2.2E-22 125.9 7.9 85 46-134 13-97 (103)
181 1wg5_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 122.1 11.9 83 140-224 13-96 (104)
182 2ki2_A SS-DNA binding protein 99.7 2.5E-18 8.5E-23 124.9 5.5 82 143-225 2-83 (90)
183 2ek1_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 125.6 6.1 81 141-221 14-94 (95)
184 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.9E-18 1.7E-22 119.5 6.7 76 143-219 1-76 (77)
185 1x4g_A Nucleolysin TIAR; struc 99.7 2.8E-17 9.6E-22 123.7 11.3 82 138-225 21-102 (109)
186 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.2E-18 1.4E-22 126.7 6.6 87 45-135 9-95 (102)
187 2la6_A RNA-binding protein FUS 99.7 2E-17 7E-22 122.3 10.2 82 45-130 10-99 (99)
188 2cq1_A PTB-like protein L; RRM 99.7 7.1E-18 2.4E-22 124.6 7.5 83 45-135 12-94 (101)
189 1s79_A Lupus LA protein; RRM, 99.7 1.8E-17 6.3E-22 123.1 9.8 80 46-131 9-88 (103)
190 2cpd_A Apobec-1 stimulating pr 99.7 7.8E-17 2.7E-21 119.1 13.2 79 138-224 11-91 (99)
191 3ns6_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 126.6 5.7 82 47-132 5-93 (100)
192 1x4f_A Matrin 3; structural ge 99.7 7E-18 2.4E-22 126.3 7.4 81 140-226 23-106 (112)
193 2dis_A Unnamed protein product 99.7 3.1E-17 1.1E-21 123.5 10.8 92 43-135 3-95 (109)
194 2hgl_A HNRPF protein, heteroge 99.7 3.6E-18 1.2E-22 133.1 5.8 83 139-223 41-126 (136)
195 2dnp_A RNA-binding protein 14; 99.7 3.9E-17 1.3E-21 118.5 10.9 78 139-224 6-83 (90)
196 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.5E-17 1.5E-21 128.4 12.1 83 137-219 58-140 (140)
197 2ywk_A Putative RNA-binding pr 99.7 1.8E-17 6.3E-22 121.5 9.1 82 45-131 13-94 (95)
198 2cpy_A RNA-binding protein 12; 99.7 5.5E-18 1.9E-22 128.7 6.4 84 139-224 12-96 (114)
199 2d9p_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 122.2 10.4 84 46-135 13-96 (103)
200 2nlw_A Eukaryotic translation 99.7 3.1E-17 1E-21 122.6 10.2 82 140-223 13-101 (105)
201 2jvr_A Nucleolar protein 3; RN 99.7 2.5E-17 8.5E-22 123.7 9.7 78 142-223 28-106 (111)
202 1x4e_A RNA binding motif, sing 99.7 6.5E-18 2.2E-22 121.3 6.2 81 46-130 3-83 (85)
203 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.4E-17 1.2E-21 122.0 10.3 85 44-134 11-95 (103)
204 2fc8_A NCL protein; structure 99.7 3.4E-17 1.2E-21 121.8 10.1 86 137-225 10-95 (102)
205 2hvz_A Splicing factor, argini 99.7 2.6E-17 8.9E-22 122.2 9.4 78 143-225 1-78 (101)
206 2ytc_A PRE-mRNA-splicing facto 99.7 3.5E-17 1.2E-21 117.4 9.8 77 138-220 8-85 (85)
207 2mss_A Protein (musashi1); RNA 99.7 1.7E-17 5.7E-22 116.1 7.9 75 50-129 1-75 (75)
208 2e5h_A Zinc finger CCHC-type a 99.7 9.8E-18 3.3E-22 122.7 7.0 82 45-130 13-94 (94)
209 3n9u_C Cleavage and polyadenyl 99.7 2E-17 6.9E-22 132.4 9.4 83 47-133 54-138 (156)
210 1x4f_A Matrin 3; structural ge 99.7 7.5E-18 2.6E-22 126.1 6.4 82 45-134 22-104 (112)
211 1p1t_A Cleavage stimulation fa 99.7 1.9E-17 6.6E-22 123.6 8.6 84 47-134 7-90 (104)
212 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-17 4.6E-22 125.8 7.8 85 45-133 23-107 (110)
213 1wez_A HnRNP H', FTP-3, hetero 99.7 2E-17 6.7E-22 122.8 8.2 82 139-223 12-93 (102)
214 1x5o_A RNA binding motif, sing 99.7 4.1E-17 1.4E-21 123.9 10.1 83 139-222 22-112 (114)
215 2cqd_A RNA-binding region cont 99.7 2.5E-17 8.7E-22 125.5 9.0 85 45-134 14-98 (116)
216 2la4_A Nuclear and cytoplasmic 99.7 2.2E-17 7.5E-22 122.6 8.4 76 141-222 26-101 (101)
217 2cq3_A RNA-binding protein 9; 99.7 4.7E-17 1.6E-21 121.2 10.2 85 45-135 12-96 (103)
218 2dh8_A DAZ-associated protein 99.7 2.1E-17 7.3E-22 123.6 8.3 86 45-135 13-98 (105)
219 3ucg_A Polyadenylate-binding p 99.7 3.5E-17 1.2E-21 118.5 9.2 81 47-132 5-85 (89)
220 2dnn_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 122.7 9.2 80 141-223 15-94 (109)
221 1u6f_A Tcubp1, RNA-binding pro 99.7 4E-17 1.4E-21 128.5 10.0 86 46-135 40-125 (139)
222 2wbr_A GW182, gawky, LD47780P; 99.7 2.6E-17 8.9E-22 115.9 7.8 73 47-129 6-78 (89)
223 2jvo_A Nucleolar protein 3; nu 99.7 4.2E-17 1.5E-21 122.4 9.6 80 137-224 26-105 (108)
224 1fj7_A Nucleolin RBD1, protein 99.7 5.7E-18 1.9E-22 125.8 4.7 85 139-225 14-98 (101)
225 2m2b_A RNA-binding protein 10; 99.7 1.6E-17 5.4E-22 129.4 7.5 86 46-134 21-110 (131)
226 3ulh_A THO complex subunit 4; 99.7 4.1E-17 1.4E-21 122.4 9.4 81 45-130 26-106 (107)
227 3ex7_B RNA-binding protein 8A; 99.7 3.8E-17 1.3E-21 126.4 9.3 86 45-134 19-104 (126)
228 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-17 5.8E-22 116.7 6.7 76 49-129 1-76 (77)
229 2do0_A HnRNP M, heterogeneous 99.7 6.3E-17 2.2E-21 122.8 10.3 85 44-133 11-95 (114)
230 1whx_A Hypothetical protein ri 99.7 7.3E-17 2.5E-21 121.7 10.5 77 141-223 9-85 (111)
231 2a3j_A U1 small nuclear ribonu 99.7 5.8E-17 2E-21 124.8 10.1 83 140-225 27-113 (127)
232 2cpe_A RNA-binding protein EWS 99.7 2.1E-17 7.3E-22 125.3 7.5 88 44-135 11-106 (113)
233 4a8x_A RNA-binding protein wit 99.7 2.5E-17 8.4E-22 119.0 7.5 83 47-133 3-86 (88)
234 2xnq_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 117.7 11.1 79 137-223 17-96 (97)
235 2cpx_A Hypothetical protein FL 99.7 1.1E-17 3.8E-22 127.2 5.8 84 139-226 22-109 (115)
236 2cq2_A Hypothetical protein LO 99.7 6.1E-17 2.1E-21 121.2 9.7 81 140-226 23-110 (114)
237 3s7r_A Heterogeneous nuclear r 99.7 3E-17 1E-21 118.3 7.5 79 46-129 9-87 (87)
238 2e5j_A Methenyltetrahydrofolat 99.7 5E-17 1.7E-21 119.7 8.8 81 139-224 16-96 (97)
239 2ki2_A SS-DNA binding protein 99.7 1.8E-17 6.3E-22 120.2 6.2 81 49-134 2-82 (90)
240 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.3E-17 2.2E-21 130.0 9.9 84 46-133 37-120 (156)
241 2rs2_A Musashi-1, RNA-binding 99.7 2.9E-17 1E-21 123.6 7.4 87 43-134 20-106 (109)
242 2db1_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 127.0 5.9 83 139-223 14-99 (118)
243 2kvi_A Nuclear polyadenylated 99.7 5.3E-17 1.8E-21 119.3 8.6 79 139-225 7-86 (96)
244 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-17 5.5E-22 116.2 5.5 75 144-219 1-75 (75)
245 2khc_A Testis-specific RNP-typ 99.7 2.2E-17 7.4E-22 126.2 6.6 80 47-130 39-118 (118)
246 2dgx_A KIAA0430 protein; RRM d 99.7 5.1E-17 1.7E-21 119.4 8.2 81 47-134 8-92 (96)
247 1x5p_A Negative elongation fac 99.7 3.8E-16 1.3E-20 114.9 13.0 79 139-225 12-90 (97)
248 2krb_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 116.4 6.8 73 143-217 2-81 (81)
249 1x4a_A Splicing factor, argini 99.7 8.5E-17 2.9E-21 121.1 9.3 83 45-134 19-101 (109)
250 2ek1_A RNA-binding protein 12; 99.7 1.5E-17 5.1E-22 122.0 4.8 81 47-131 14-94 (95)
251 2cqg_A TDP-43, TAR DNA-binding 99.7 9.7E-17 3.3E-21 119.5 9.2 84 46-135 13-96 (103)
252 1why_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 117.1 10.2 80 44-133 13-94 (97)
253 2cqp_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 122.1 5.2 83 46-132 13-95 (98)
254 2cqh_A IGF-II mRNA-binding pro 99.7 7.7E-17 2.6E-21 117.7 8.2 79 140-225 6-86 (93)
255 2lcw_A RNA-binding protein FUS 99.5 2.4E-18 8.2E-23 131.2 0.0 85 140-224 5-97 (116)
256 1wg5_A Heterogeneous nuclear r 99.7 1E-16 3.4E-21 119.6 8.8 82 46-133 13-95 (104)
257 2dng_A Eukaryotic translation 99.7 9.4E-17 3.2E-21 119.6 8.6 84 45-134 12-95 (103)
258 1nu4_A U1A RNA binding domain; 99.7 7.2E-17 2.5E-21 118.8 7.8 82 140-224 6-91 (97)
259 1x5o_A RNA binding motif, sing 99.7 1.8E-16 6.2E-21 120.3 10.2 85 45-132 22-112 (114)
260 2krb_A Eukaryotic translation 99.7 8.9E-17 3.1E-21 114.1 7.9 74 48-127 1-81 (81)
261 2e5g_A U6 snRNA-specific termi 99.7 2.2E-16 7.6E-21 115.4 10.3 79 141-225 7-85 (94)
262 2kt5_A RNA and export factor-b 99.7 1.2E-16 4E-21 123.3 9.1 84 46-134 33-116 (124)
263 1wel_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 129.1 3.2 84 139-223 22-105 (124)
264 3lqv_A PRE-mRNA branch site pr 99.7 2E-16 6.8E-21 120.3 10.1 81 141-224 7-87 (115)
265 2a3j_A U1 small nuclear ribonu 99.7 2.9E-16 1E-20 120.8 11.0 83 45-134 26-112 (127)
266 2lmi_A GRSF-1, G-rich sequence 99.7 3.1E-17 1.1E-21 123.0 5.4 83 139-223 8-93 (107)
267 2dgw_A Probable RNA-binding pr 99.7 7.8E-17 2.7E-21 117.2 7.3 81 46-133 8-88 (91)
268 1wez_A HnRNP H', FTP-3, hetero 99.7 7.4E-17 2.5E-21 119.7 7.3 82 45-133 12-93 (102)
269 3q2s_C Cleavage and polyadenyl 99.7 9.6E-17 3.3E-21 136.8 8.8 82 47-132 67-150 (229)
270 2cpi_A CCR4-NOT transcription 99.7 4.5E-17 1.5E-21 123.0 6.0 84 46-133 13-102 (111)
271 2f3j_A RNA and export factor b 99.7 1.9E-16 6.4E-21 129.5 10.1 85 139-224 85-169 (177)
272 2e44_A Insulin-like growth fac 99.7 2.3E-16 7.8E-21 115.9 9.5 79 141-223 14-93 (96)
273 1wi8_A EIF-4B, eukaryotic tran 99.7 8.3E-17 2.8E-21 120.1 7.2 84 46-135 13-97 (104)
274 3zzy_A Polypyrimidine tract-bi 99.7 3.3E-16 1.1E-20 120.0 10.6 80 140-224 26-108 (130)
275 2hgn_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 127.4 5.7 117 10-134 1-125 (139)
276 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.9E-17 2.7E-21 119.3 7.0 83 46-133 17-99 (100)
277 2xs2_A Deleted in azoospermia- 99.7 7.9E-17 2.7E-21 119.8 6.9 83 140-225 7-89 (102)
278 2err_A Ataxin-2-binding protei 99.7 6.4E-17 2.2E-21 121.7 6.5 82 45-132 26-107 (109)
279 2dnq_A RNA-binding protein 4B; 99.7 4.2E-16 1.4E-20 113.0 10.5 79 45-135 5-83 (90)
280 1iqt_A AUF1, heterogeneous nuc 99.7 7.6E-17 2.6E-21 112.7 6.4 75 50-129 1-75 (75)
281 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-16 3.8E-21 117.6 7.5 81 139-224 13-93 (96)
282 3beg_B Splicing factor, argini 99.7 2.5E-16 8.6E-21 119.6 9.7 76 141-223 15-95 (115)
283 2jwn_A Embryonic polyadenylate 99.7 1.8E-16 6E-21 122.3 8.6 82 47-133 35-116 (124)
284 1sjr_A Polypyrimidine tract-bi 99.7 2.8E-16 9.5E-21 124.9 9.8 80 141-224 45-126 (164)
285 1x4g_A Nucleolysin TIAR; struc 99.7 4.1E-16 1.4E-20 117.3 10.3 81 45-135 22-102 (109)
286 2hgm_A HNRPF protein, heteroge 99.7 1E-16 3.5E-21 122.9 6.9 81 140-223 40-122 (126)
287 2e5j_A Methenyltetrahydrofolat 99.7 3.8E-16 1.3E-20 114.9 9.7 79 46-133 17-95 (97)
288 1x4b_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 122.2 6.6 83 47-134 26-108 (116)
289 2jvr_A Nucleolar protein 3; RN 99.7 1E-16 3.4E-21 120.3 6.5 79 46-132 26-105 (111)
290 2cpj_A Non-POU domain-containi 99.7 1.9E-16 6.6E-21 117.0 7.8 79 46-134 13-91 (99)
291 2voo_A Lupus LA protein; RNA-b 99.7 7E-16 2.4E-20 128.0 11.9 122 101-224 63-189 (193)
292 2cq4_A RNA binding motif prote 99.7 8.8E-17 3E-21 122.1 5.7 82 47-133 24-105 (114)
293 2e5i_A Heterogeneous nuclear r 99.7 8E-16 2.7E-20 117.4 10.9 78 141-224 24-104 (124)
294 2diu_A KIAA0430 protein; struc 99.7 1E-15 3.5E-20 108.8 10.5 75 143-227 10-89 (96)
295 2la4_A Nuclear and cytoplasmic 99.7 2.7E-16 9.4E-21 116.6 8.0 76 47-132 26-101 (101)
296 1x4c_A Splicing factor, argini 99.6 2.6E-16 8.8E-21 118.2 7.9 78 46-134 13-95 (108)
297 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2E-16 6.7E-21 124.7 7.6 80 46-129 61-140 (140)
298 2ytc_A PRE-mRNA-splicing facto 99.6 3.9E-16 1.3E-20 111.9 8.4 75 46-130 10-85 (85)
299 1fj7_A Nucleolin RBD1, protein 99.6 4.4E-17 1.5E-21 120.9 3.4 84 45-134 14-97 (101)
300 2dha_A FLJ20171 protein; RRM d 99.6 6.3E-17 2.1E-21 123.8 4.4 82 140-223 21-106 (123)
301 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.5E-20 110.6 10.3 77 139-224 8-86 (89)
302 2dnp_A RNA-binding protein 14; 99.6 6.7E-16 2.3E-20 111.9 9.3 78 45-134 6-83 (90)
303 2nlw_A Eukaryotic translation 99.6 2.6E-16 8.7E-21 117.6 7.3 80 47-132 14-100 (105)
304 1wg1_A KIAA1579 protein, homol 99.6 3.5E-16 1.2E-20 112.9 7.6 76 141-223 4-79 (88)
305 2cpy_A RNA-binding protein 12; 99.6 5.2E-17 1.8E-21 123.3 3.2 83 45-133 12-95 (114)
306 1whx_A Hypothetical protein ri 99.6 3.1E-16 1.1E-20 118.3 7.4 77 47-133 9-85 (111)
307 2cpx_A Hypothetical protein FL 99.6 1.7E-16 5.7E-21 120.7 5.8 87 45-135 22-108 (115)
308 1wel_A RNA-binding protein 12; 99.6 7.9E-17 2.7E-21 124.2 3.8 82 46-132 23-104 (124)
309 2j8a_A Histone-lysine N-methyl 99.6 4.5E-16 1.5E-20 117.0 7.5 78 143-220 3-94 (136)
310 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.7E-21 121.0 5.6 80 46-131 21-104 (123)
311 1sjr_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 119.0 12.6 81 48-134 46-126 (164)
312 2f3j_A RNA and export factor b 99.6 7.6E-16 2.6E-20 125.9 9.3 84 46-134 86-169 (177)
313 2fc9_A NCL protein; structure 99.6 2.2E-16 7.6E-21 117.1 5.5 83 44-134 11-93 (101)
314 2hgl_A HNRPF protein, heteroge 99.6 1.7E-16 5.9E-21 123.6 5.1 117 10-132 1-125 (136)
315 2hgm_A HNRPF protein, heteroge 99.6 3.8E-16 1.3E-20 119.7 6.8 81 45-132 39-121 (126)
316 2dgt_A RNA-binding protein 30; 99.6 7.7E-16 2.6E-20 112.1 8.1 78 45-134 7-84 (92)
317 3pgw_S U1-70K; protein-RNA com 99.6 1.7E-16 5.7E-21 147.8 5.6 84 46-133 100-183 (437)
318 1wf0_A TDP-43, TAR DNA-binding 99.6 6.7E-16 2.3E-20 111.4 7.5 78 141-225 4-81 (88)
319 2hzc_A Splicing factor U2AF 65 99.6 1.6E-15 5.6E-20 109.1 9.4 72 140-218 4-86 (87)
320 2dgu_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 113.9 8.6 78 46-135 9-86 (103)
321 3d2w_A TAR DNA-binding protein 99.6 4.1E-16 1.4E-20 112.6 6.2 79 44-133 7-85 (89)
322 2dnn_A RNA-binding protein 12; 99.6 3.7E-16 1.3E-20 117.0 6.1 78 48-132 16-93 (109)
323 3egn_A RNA-binding protein 40; 99.6 1.6E-16 5.5E-21 125.6 4.4 86 140-225 43-133 (143)
324 3u1l_A PRE-mRNA-splicing facto 99.6 9.4E-16 3.2E-20 130.1 8.9 101 118-224 110-231 (240)
325 2lcw_A RNA-binding protein FUS 99.4 3.4E-17 1.2E-21 124.7 0.0 86 46-135 5-98 (116)
326 2fc8_A NCL protein; structure 99.6 7.8E-16 2.7E-20 114.3 7.4 83 45-134 12-94 (102)
327 2pe8_A Splicing factor 45; RRM 99.6 2.8E-15 9.6E-20 111.5 10.1 82 140-221 6-93 (105)
328 1nu4_A U1A RNA binding domain; 99.6 4E-16 1.4E-20 114.8 5.4 83 45-134 5-91 (97)
329 2xs2_A Deleted in azoospermia- 99.6 3.2E-16 1.1E-20 116.4 4.7 81 47-134 8-88 (102)
330 2xnq_A Nuclear polyadenylated 99.6 2.5E-15 8.4E-20 110.4 9.3 76 45-132 19-95 (97)
331 2jvo_A Nucleolar protein 3; nu 99.6 1.5E-15 5.2E-20 113.8 8.2 77 45-133 28-104 (108)
332 2cqh_A IGF-II mRNA-binding pro 99.6 9.2E-16 3.2E-20 111.9 6.4 81 45-134 5-85 (93)
333 2cq2_A Hypothetical protein LO 99.6 1E-15 3.4E-20 114.6 6.7 80 45-132 22-106 (114)
334 2bz2_A Negative elongation fac 99.6 2.3E-15 7.9E-20 115.1 8.9 78 140-225 37-114 (121)
335 2db1_A Heterogeneous nuclear r 99.6 4.3E-16 1.5E-20 118.9 4.6 82 46-132 15-98 (118)
336 2dnl_A Cytoplasmic polyadenyla 99.6 5.4E-15 1.8E-19 112.1 10.7 79 141-222 7-88 (114)
337 3beg_B Splicing factor, argini 99.6 2.2E-15 7.7E-20 114.3 8.5 76 46-132 14-94 (115)
338 2e44_A Insulin-like growth fac 99.6 3.7E-15 1.3E-19 109.3 9.3 80 46-133 13-93 (96)
339 2lmi_A GRSF-1, G-rich sequence 99.6 7.6E-16 2.6E-20 115.4 5.7 83 45-132 8-92 (107)
340 2e5g_A U6 snRNA-specific termi 99.6 4.1E-15 1.4E-19 108.7 9.1 80 45-134 5-84 (94)
341 2kvi_A Nuclear polyadenylated 99.6 3.1E-15 1.1E-19 109.7 8.5 79 44-134 6-85 (96)
342 2cpd_A Apobec-1 stimulating pr 99.6 5.2E-15 1.8E-19 109.2 9.2 78 45-134 12-91 (99)
343 2voo_A Lupus LA protein; RNA-b 99.6 4.5E-15 1.6E-19 123.1 9.8 108 19-132 63-187 (193)
344 2hzc_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 107.1 8.0 73 45-128 3-86 (87)
345 1wf1_A RNA-binding protein RAL 99.6 2.8E-15 9.5E-20 112.9 7.4 74 48-133 27-101 (110)
346 2dnl_A Cytoplasmic polyadenyla 99.6 2.2E-15 7.6E-20 114.2 6.8 78 46-130 6-86 (114)
347 3zzy_A Polypyrimidine tract-bi 99.6 4.2E-15 1.4E-19 113.8 8.3 78 49-135 29-109 (130)
348 1wg1_A KIAA1579 protein, homol 99.6 1.3E-15 4.6E-20 109.8 5.2 77 46-133 3-79 (88)
349 2j8a_A Histone-lysine N-methyl 99.6 1.5E-15 5E-20 114.2 5.5 80 49-132 3-96 (136)
350 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-15 3.7E-20 112.2 3.9 79 46-133 14-92 (96)
351 2e5i_A Heterogeneous nuclear r 99.6 1.8E-14 6.2E-19 109.8 10.8 75 50-134 27-104 (124)
352 1x5p_A Negative elongation fac 99.6 9.7E-15 3.3E-19 107.3 8.4 77 46-134 13-89 (97)
353 3egn_A RNA-binding protein 40; 99.6 3E-15 1E-19 118.3 5.6 83 45-134 42-132 (143)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 3.1E-15 1.1E-19 107.8 4.7 78 46-134 3-80 (88)
355 2pe8_A Splicing factor 45; RRM 99.5 2.5E-14 8.7E-19 106.2 9.5 85 45-132 5-94 (105)
356 2diu_A KIAA0430 protein; struc 99.5 3.3E-14 1.1E-18 101.0 9.6 75 47-135 7-87 (96)
357 2dit_A HIV TAT specific factor 99.5 6.6E-14 2.3E-18 105.6 11.9 83 139-225 12-105 (112)
358 3v4m_A Splicing factor U2AF 65 99.5 3E-14 1E-18 105.9 9.4 82 141-222 4-97 (105)
359 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.7E-19 121.6 8.9 82 45-134 131-231 (240)
360 2bz2_A Negative elongation fac 99.5 3.2E-14 1.1E-18 108.7 8.4 77 46-134 37-113 (121)
361 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-13 3.7E-18 104.9 7.5 81 141-221 19-108 (118)
362 1jmt_A Splicing factor U2AF 35 99.5 3.6E-14 1.2E-18 105.3 4.6 72 147-219 20-103 (104)
363 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.2E-12 7.4E-17 94.6 11.7 67 152-225 27-93 (100)
364 1jmt_A Splicing factor U2AF 35 99.4 1.8E-13 6.1E-18 101.5 3.5 72 53-129 20-103 (104)
365 3tht_A Alkylated DNA repair pr 99.4 1.5E-12 5E-17 116.4 9.9 76 139-220 15-97 (345)
366 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.8E-17 98.3 8.2 83 44-134 11-104 (112)
367 3s6e_A RNA-binding protein 39; 99.4 3.2E-12 1.1E-16 96.1 9.9 78 141-222 6-93 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 7.8E-12 2.7E-16 91.6 11.6 82 38-134 11-92 (100)
369 3v4m_A Splicing factor U2AF 65 99.4 1E-12 3.6E-17 97.5 7.0 83 46-132 3-97 (105)
370 3tht_A Alkylated DNA repair pr 99.3 3.2E-12 1.1E-16 114.2 8.9 111 45-166 15-132 (345)
371 3ue2_A Poly(U)-binding-splicin 99.3 3.3E-12 1.1E-16 96.7 6.6 83 46-131 18-108 (118)
372 2dnr_A Synaptojanin-1; RRM dom 99.2 8.6E-11 3E-15 82.7 9.3 72 142-222 7-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-10 4.8E-15 87.2 9.9 75 140-220 16-94 (121)
374 3s6e_A RNA-binding protein 39; 99.1 1.3E-10 4.4E-15 87.2 6.7 79 46-132 5-93 (114)
375 1owx_A Lupus LA protein, SS-B, 99.1 2.4E-10 8.1E-15 85.9 7.5 76 47-130 17-94 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 7.1E-10 2.4E-14 78.3 6.8 72 141-221 14-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.9 2.2E-09 7.7E-14 75.5 5.2 73 47-132 6-86 (91)
378 3dxb_A Thioredoxin N-terminall 98.9 4.9E-09 1.7E-13 88.8 7.9 69 153-221 140-212 (222)
379 2l9w_A U4/U6 snRNA-associated- 98.7 4.4E-08 1.5E-12 70.5 8.0 72 142-219 21-97 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 3.4E-08 1.2E-12 69.8 5.7 72 47-131 14-94 (95)
381 3dxb_A Thioredoxin N-terminall 98.6 6.6E-08 2.3E-12 81.7 7.8 69 60-131 141-212 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.5 8.2E-07 2.8E-11 63.5 9.4 89 47-155 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.4 9.8E-07 3.4E-11 63.5 6.9 71 47-127 20-95 (117)
384 1wey_A Calcipressin 1; structu 98.1 1.9E-05 6.4E-10 56.8 8.7 76 142-223 5-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.1 5.1E-05 1.8E-09 54.2 10.2 77 141-226 7-88 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.7 0.00021 7E-09 52.9 8.6 73 140-220 22-95 (119)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.0005 1.7E-08 48.5 9.5 78 143-220 2-86 (91)
388 1whv_A Poly(A)-specific ribonu 97.6 0.00013 4.3E-09 51.6 5.9 55 48-113 16-70 (100)
389 1wey_A Calcipressin 1; structu 97.5 0.00017 5.8E-09 51.8 5.2 76 48-133 5-85 (104)
390 3ctr_A Poly(A)-specific ribonu 97.4 0.00015 5.3E-09 51.3 4.4 54 49-113 7-60 (101)
391 1whv_A Poly(A)-specific ribonu 97.3 0.00053 1.8E-08 48.4 5.6 55 142-205 16-70 (100)
392 3ctr_A Poly(A)-specific ribonu 97.2 0.00063 2.2E-08 48.1 5.3 54 143-205 7-60 (101)
393 1uw4_A UPF3X; nonsense mediate 97.1 0.002 6.7E-08 45.4 7.1 68 49-117 2-70 (91)
394 2l08_A Regulator of nonsense t 97.1 0.0022 7.4E-08 45.5 7.2 79 142-220 9-94 (97)
395 1wwh_A Nucleoporin 35, nucleop 96.5 0.006 2.1E-07 45.0 6.4 69 37-115 13-81 (119)
396 3p3d_A Nucleoporin 53; structu 96.4 0.0053 1.8E-07 46.0 5.2 78 142-221 7-98 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.2 0.0021 7.1E-08 59.4 3.0 57 141-203 52-108 (464)
398 3pq1_A Poly(A) RNA polymerase; 96.0 0.0026 8.9E-08 58.7 2.4 59 45-111 50-108 (464)
399 2l08_A Regulator of nonsense t 95.8 0.0065 2.2E-07 43.0 3.2 68 47-115 8-76 (97)
400 3d45_A Poly(A)-specific ribonu 89.8 0.58 2E-05 43.9 6.7 55 49-114 441-495 (507)
401 3d45_A Poly(A)-specific ribonu 88.8 1.1 3.6E-05 42.2 7.6 56 142-206 440-495 (507)
402 3p3d_A Nucleoporin 53; structu 83.9 1.2 4.1E-05 33.2 4.1 35 10-45 62-96 (132)
403 3zzp_A TS9, ribosomal protein 75.4 6.1 0.00021 26.4 5.1 61 12-74 7-70 (77)
404 2g0c_A ATP-dependent RNA helic 73.0 10 0.00034 25.0 5.9 59 153-220 12-75 (76)
405 2pk2_A Cyclin-T1, protein TAT; 70.6 0.88 3E-05 40.7 0.0 11 154-164 229-239 (358)
406 1x60_A Sporulation-specific N- 65.2 3 0.0001 27.8 1.9 55 16-73 16-70 (79)
407 2kjw_A TS9, 30S ribosomal prot 61.2 18 0.00061 25.3 5.3 59 12-72 7-68 (96)
408 1uta_A FTSN, MSGA, cell divisi 56.8 19 0.00065 24.0 4.8 55 16-73 16-70 (81)
409 4eyt_A Telomerase associated p 54.2 48 0.0017 22.5 8.1 59 46-114 10-68 (129)
410 4eyt_A Telomerase associated p 53.9 49 0.0017 22.5 8.0 55 142-204 12-66 (129)
411 3fry_A Probable copper-exporti 47.8 50 0.0017 20.8 5.7 56 142-204 6-61 (73)
412 2ot8_C HnRNP M, heterogeneous 47.2 6.5 0.00022 20.5 0.8 9 334-342 16-24 (30)
413 4fdd_B RNA-binding protein FUS 46.2 18 0.00061 18.8 2.3 6 337-342 24-29 (29)
414 2g0c_A ATP-dependent RNA helic 43.2 65 0.0022 20.8 7.0 68 50-129 2-74 (76)
415 3u5e_X 60S ribosomal protein L 39.4 1.2E+02 0.0041 22.8 7.9 53 55-111 85-138 (142)
416 3iz5_X 60S ribosomal protein L 37.8 1.3E+02 0.0043 22.9 7.0 52 55-110 95-147 (152)
417 4e8u_A Putative uncharacterize 37.6 53 0.0018 25.6 5.0 50 50-104 14-74 (172)
418 4a17_R RPL23A, 60S ribosomal p 34.8 1.1E+02 0.0038 23.2 6.2 57 51-111 89-146 (150)
419 3lpe_A Putative transcription 34.5 1.1E+02 0.0037 20.9 8.3 34 73-112 37-70 (92)
420 2e5p_A Protein PHF1, PHD finge 31.2 33 0.0011 21.9 2.4 11 184-194 37-47 (68)
421 4a4j_A Pacszia, cation-transpo 30.6 92 0.0031 19.0 4.8 55 143-203 4-61 (69)
422 2op5_A Hypothetical protein; f 30.5 1.2E+02 0.0042 20.2 8.2 48 63-113 37-84 (117)
423 2gu3_A YPMB protein; APC1927, 26.7 86 0.0029 23.3 4.5 65 38-102 52-128 (136)
424 2zkr_s 60S ribosomal protein L 24.9 1.8E+02 0.0061 22.2 5.9 56 51-110 95-151 (156)
425 3h7h_B Transcription elongatio 24.3 1.7E+02 0.0057 20.7 5.4 33 76-114 41-73 (106)
426 2m0o_A PHD finger protein 1; t 23.7 53 0.0018 21.6 2.4 20 167-194 45-64 (79)
427 3dxs_X Copper-transporting ATP 22.3 1.5E+02 0.005 18.3 5.9 56 143-204 4-63 (74)
428 3ts2_A Protein LIN-28 homolog 21.8 19 0.00066 27.4 0.0 28 157-192 2-29 (148)
429 1ywx_A 30S ribosomal protein S 21.7 46 0.0016 23.5 1.9 19 6-25 61-79 (102)
430 2eqj_A Metal-response element- 21.5 64 0.0022 20.7 2.4 11 184-194 41-51 (66)
431 2hh3_A KH-type splicing regula 21.1 20 0.0007 25.5 0.0 46 157-206 31-76 (106)
432 2g1d_A 30S ribosomal protein S 20.5 40 0.0014 23.6 1.4 19 6-25 62-80 (98)
433 1eij_A Hypothetical protein MT 20.4 92 0.0031 20.8 3.1 21 54-74 50-70 (80)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.8e-41 Score=300.05 Aligned_cols=213 Identities=20% Similarity=0.322 Sum_probs=197.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCC
Q 019327 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 86 (342)
Q Consensus 7 g~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~ 86 (342)
++++|||||+|.+.++|.+|++.+|+..+.|+.|.|.++...++|||+|||+++|+++|+++|++||. |.+|.++.+ .
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~ 131 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-E 131 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-T
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-C
Confidence 67899999999999999999999999999999999999999999999999999999999999999999 999999998 5
Q ss_pred CCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCC-CHHHHHHHHhc
Q 019327 87 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI-TQDRLKELFAH 165 (342)
Q Consensus 87 ~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~ 165 (342)
.++.++|||||+|.+.++|.+|++.|++. .++++.|.|.++.+.... ......++|||+|||.++ ++++|+++|++
T Consensus 132 ~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 132 RTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSA 208 (284)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCS
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhC
Confidence 78999999999999999999999999986 789999999999876543 334567899999999995 99999999999
Q ss_pred CCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 166 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 166 ~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
||.|.++.|+.+.. +.++++|||+|.+.++|.+|++.||+..|.|+.|+|+|+.++..+
T Consensus 209 ~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 209 VHSPTFCQLACGQD-GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp SSCCSEEEEEECSS-CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred CCCeEEEEEEECCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 99999999999874 555999999999999999999999999999999999999987754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=9.2e-40 Score=291.45 Aligned_cols=207 Identities=22% Similarity=0.347 Sum_probs=181.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhC-CCeEEEEEeeCCCC
Q 019327 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQN 87 (342)
Q Consensus 9 ~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G-~~v~~v~~~~~~~~ 87 (342)
++|||||+|.+.++|.+|++ +|+..+.|+.|.|.++. .++|||+|||+++++++|+++|+.|| + |.+|.++++ .
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~--~ 154 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSL--R 154 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC-----
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeC--C
Confidence 58999999999999999996 99999999999999985 88999999999999999999999999 8 999999998 3
Q ss_pred CCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCccc---ccccCceEEEEecCCCC-CCHHHHHHHH
Q 019327 88 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKD-ITQDRLKELF 163 (342)
Q Consensus 88 ~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~---~~~~~~~~l~v~~l~~~-~~~~~l~~~f 163 (342)
.+.++|||||+|.+.++|.+|++.|++. .+.++.|.|.++.+..... ......++|||.|||.+ +++++|+++|
T Consensus 155 ~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 155 FNTSRRFAYIDVTSKEDARYCVEKLNGL--KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF 232 (292)
T ss_dssp ----CCEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH
Confidence 4789999999999999999999999986 7899999999988765432 23445789999999999 9999999999
Q ss_pred hcCCcEEEEEecCCCC-CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCC
Q 019327 164 AHHGKITKVVIPPAKP-GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 164 ~~~G~i~~v~i~~~~~-~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 223 (342)
++||.|.+|.|+.+.. ++.+++||||+|.+.++|.+|+ .||+..|.|+.|+|+|+++++
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999999999999877 4666999999999999999999 999999999999999998763
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.1e-36 Score=256.14 Aligned_cols=173 Identities=21% Similarity=0.399 Sum_probs=155.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
+.+.++|||+|||+++||++|+++|++||+ |++|+|++| ..+++++|||||+|.+.++|++|++.+++. .+.++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~--~~~g~~i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTMNFD--VIKGKPV 87 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCC-EEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHhhhh--hcCCccc
Confidence 456789999999999999999999999999 999999999 678999999999999999999999999986 7889999
Q ss_pred eeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 125 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
.+.++...... ......+|||+|||+++++++|+++|++||.|++|+|+.++.+ +++||||+|.+.++|++|++.|
T Consensus 88 ~~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~--~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 88 RIMWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EEEECCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC--CceEEEEEeCCHHHHHHHHHHh
Confidence 99988766542 3334578999999999999999999999999999999987543 4899999999999999999999
Q ss_pred CCceeCCcEEEEEeccCCCCC
Q 019327 205 EKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 205 ~~~~~~g~~i~v~~a~~~~~~ 225 (342)
|+..|+|+.|+|++|+++.++
T Consensus 164 ng~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp TTCEETTEECEEEECCCHHHH
T ss_pred CCCEECCEEEEEEEcCCCccc
Confidence 999999999999999886543
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-35 Score=237.90 Aligned_cols=166 Identities=22% Similarity=0.406 Sum_probs=153.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
++|||+|||+++|+++|+++|++||+ |.+|+++++ ..++++|||||+|.+.++|++|++.+++. .+.++.+.|.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~-i~~v~i~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP-IANIKIMID--KNNKNVNYAFVEYHQSHDANIALQTLNGK--QIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC-EEEEEEECC--CC-CCEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC-eEEEEEEEC--CCCCCCCEEEEEeCCHHHHHHHHHHcCCC--ccCCCeeEEEE
Confidence 58999999999999999999999999 999999998 45789999999999999999999999986 78899999999
Q ss_pred CCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCce
Q 019327 129 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 208 (342)
+.+... .......+|||+|||.++++++|+++|++||.|.++.++.+..++.++++|||+|.+.++|.+|++.||+..
T Consensus 76 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 76 AFQSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred cCCCCC--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 877654 344557899999999999999999999999999999999998888889999999999999999999999999
Q ss_pred eCCcEEEEEeccC
Q 019327 209 IDGQVLDCSLAKP 221 (342)
Q Consensus 209 ~~g~~i~v~~a~~ 221 (342)
++|+.|+|+||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.3e-34 Score=246.54 Aligned_cols=175 Identities=23% Similarity=0.448 Sum_probs=157.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++|+++|+++|++||+ |.+|+++++ ..++.+++||||+|.+.++|++|++.|++. .+.++.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCC-EEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEE
Confidence 4579999999999999999999999999 999999998 568899999999999999999999999985 789999999
Q ss_pred ecCCCCCccc-------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHH
Q 019327 127 SWADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 199 (342)
Q Consensus 127 ~~~~~~~~~~-------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~ 199 (342)
.++....... ......++|||+|||.++++++|+++|++||.|++|+|+.+..++.++++|||+|.+.++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 9887664322 223456899999999999999999999999999999999998888889999999999999999
Q ss_pred HHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 200 ALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 200 a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
|++.||+..|.|+.|+|.++.++...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999987543
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=8.5e-35 Score=244.00 Aligned_cols=177 Identities=20% Similarity=0.370 Sum_probs=150.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
....++|||+|||+++|+++|+++|++||+ |.+|+|+++ ..++.++|||||+|.+.++|++|++. ++ ..++++.|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~-~~--~~~~g~~l 84 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA-RP--HKVDGRVV 84 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT-CS--CEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc-CC--CEECCEEe
Confidence 445689999999999999999999999999 999999999 57889999999999999999999987 44 47899999
Q ss_pred eeecCCCCCccc--ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 125 TVSWADPRNAES--SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 125 ~v~~~~~~~~~~--~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
.|.++.+..... ......++|||+|||.++++++|+++|++||.|++|.|+.+..++.+++||||+|.+.++|.+|++
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 999987664332 233456899999999999999999999999999999999998888889999999999999999999
Q ss_pred hcCCceeCCcEEEEEeccCCCCCCC
Q 019327 203 NTEKYEIDGQVLDCSLAKPQADQKT 227 (342)
Q Consensus 203 ~l~~~~~~g~~i~v~~a~~~~~~~~ 227 (342)
. ++..|+|+.|.|+++.++.....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp C-SCCEETTEECEEEECC-------
T ss_pred h-CCcEECCEEEEEEecCChhHhcc
Confidence 7 78999999999999998876543
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.9e-34 Score=235.43 Aligned_cols=165 Identities=28% Similarity=0.468 Sum_probs=152.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
++++|||+|||+++|+++|+++|++||+ |.+|.++++ ..++.++|||||+|.+.++|++|++.+++. .+.++.|.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTLNGL--RLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHcCCC--ccCCceEEE
Confidence 4689999999999999999999999999 999999999 568999999999999999999999999985 788999999
Q ss_pred ecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
.++.+.. ......+|||+|||.++++++|+++|++||.|.++.++.+..++.++++|||+|.+.++|.+|++.||+
T Consensus 77 ~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 77 SYARPSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp EECCCCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EecCCCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 9998764 334568999999999999999999999999999999999987888899999999999999999999999
Q ss_pred ceeCCcE--EEEEec
Q 019327 207 YEIDGQV--LDCSLA 219 (342)
Q Consensus 207 ~~~~g~~--i~v~~a 219 (342)
..+.|+. |+|+||
T Consensus 153 ~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 153 QKPSGATEPITVKFA 167 (167)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CccCCCccceEEEeC
Confidence 9999964 888886
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1e-34 Score=237.36 Aligned_cols=165 Identities=23% Similarity=0.424 Sum_probs=153.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++++++|+++|++||+ |.+|+++++ ..++.++|||||+|.+.++|++|++.+++. .+.++.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGP-INTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVLNGI--TVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSC-EEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEEe-CCCCccceEEEEEECCHHHHHHHHHhcCCC--EeCCcEEEE
Confidence 5789999999999999999999999999 999999998 578899999999999999999999999985 789999999
Q ss_pred ecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
.++.+.. ......+|||.|||.++++++|+++|++||.|.++.|+.++.++.++++|||+|.+.++|.+|++.||+
T Consensus 78 ~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 78 SYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp EECCCCS----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EecCCCc----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 9998764 334568999999999999999999999999999999999987777899999999999999999999999
Q ss_pred ceeCC--cEEEEEec
Q 019327 207 YEIDG--QVLDCSLA 219 (342)
Q Consensus 207 ~~~~g--~~i~v~~a 219 (342)
..+.| ++|+|+||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.1e-35 Score=240.37 Aligned_cols=166 Identities=19% Similarity=0.403 Sum_probs=152.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++|+++|+++|++||+ |.+|+++++ ..++.++|||||+|.+.++|++|++.+ ..++++.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~~----~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVKTQ----HILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC-EEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHHSC----CEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHhcc----cccCCeEccc
Confidence 5789999999999999999999999999 999999998 578999999999999999999999852 3788999999
Q ss_pred ecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
.++.+.. ......+|||+|||.++++++|+++|++||.|.++.|+.++.++.++|+|||+|.+.++|++|++ +++
T Consensus 76 ~~~~~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 76 KRAIPRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp EECCCHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccccchh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 9887653 33446899999999999999999999999999999999998888889999999999999999998 899
Q ss_pred ceeCCcEEEEEeccCCC
Q 019327 207 YEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 207 ~~~~g~~i~v~~a~~~~ 223 (342)
..+.|+.|+|.+|.++.
T Consensus 151 ~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp ECSSSSCEEEEECCCCC
T ss_pred EEeCCeEEEEeecCCCC
Confidence 99999999999998763
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.5e-33 Score=228.59 Aligned_cols=168 Identities=23% Similarity=0.426 Sum_probs=146.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCC--CCceEEEEEecCHHHHHHHHHHhCCCCCC-CCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN--QNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDDNA 123 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l~~~~~~-~~~~~ 123 (342)
+.++|||+|||+++|+++|+++|++||+ |.+|+++++ ..++ +++|||||+|.+.++|++|++.|++..+. ...+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA-VYEINVLRD-RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEE-CSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEec-CCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 3579999999999999999999999999 999999998 4555 89999999999999999999999986332 22567
Q ss_pred CeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHh
Q 019327 124 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 124 i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
+.+.++.+... .....++|||+|||.++++++|+++|++||.|.++.|+.+.. +.+++||||+|.+.++|.+|++.
T Consensus 80 ~~~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 80 IQMKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp CEEEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHH
T ss_pred eEEcccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHH
Confidence 77777665542 334568999999999999999999999999999999999875 55699999999999999999999
Q ss_pred cCCceeC---CcEEEEEecc
Q 019327 204 TEKYEID---GQVLDCSLAK 220 (342)
Q Consensus 204 l~~~~~~---g~~i~v~~a~ 220 (342)
||+..+. +++|+|+||.
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998776 3999999984
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.9e-32 Score=224.78 Aligned_cols=160 Identities=18% Similarity=0.353 Sum_probs=144.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhh----C-------CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKI----G-------PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~----G-------~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
++.++|||+|||+++|+++|+++|++| | . |.++.+.++ +|||||+|.++++|++|+ .+++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~-v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP-VLAVQINQD-------KNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCS-EEEEEEETT-------TTEEEEEESSHHHHHHHG-GGTT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCc-eeeeEecCC-------CCEEEEEeCCHHHHHHHH-HhCC
Confidence 357899999999999999999999999 6 5 777777554 799999999999999999 8888
Q ss_pred CCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCH
Q 019327 115 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 194 (342)
Q Consensus 115 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~ 194 (342)
. .+.++.|.|.++.... .....++|||+|||.++++++|+++|++||.|.++.|+.++.++.++++|||+|.+.
T Consensus 73 ~--~~~g~~i~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 73 I--IFQGQSLKIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp C--EETTEECEEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred c--EecCceeeecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 5 7899999999877653 233468999999999999999999999999999999999987888899999999999
Q ss_pred HHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 195 SSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 195 ~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
++|++|++.||+..++|+.|.|++|.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999973
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=5.8e-32 Score=227.66 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=139.6
Q ss_pred cCCeEEEcCCC-CCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 47 AKHRLFIGNVP-RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 47 ~~~~l~v~nl~-~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
+.++|||+||| +++|+++|+++|++||. |.+|+|+++ ++|||||+|.+.++|++|++.|++. .+.++.|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~-v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~ 73 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN-VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNN--FMFGQKMN 73 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC-EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC-eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCC--EECCceEE
Confidence 46799999999 89999999999999999 999999876 3799999999999999999999996 78999999
Q ss_pred eecCCCCCcccc---------------------------------cccCceEEEEecCCCCCCHHHHHHHHhcCCcE--E
Q 019327 126 VSWADPRNAESS---------------------------------AASQVKALYVKNLPKDITQDRLKELFAHHGKI--T 170 (342)
Q Consensus 126 v~~~~~~~~~~~---------------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i--~ 170 (342)
|.++........ ...++++|||+|||+++|+++|+++|++||.| +
T Consensus 74 v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 74 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp EEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS
T ss_pred EEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 998753321000 01235689999999999999999999999999 8
Q ss_pred EEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCc----EEEEEec
Q 019327 171 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ----VLDCSLA 219 (342)
Q Consensus 171 ~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~----~i~v~~a 219 (342)
+++|+.++ +. ++++|||+|++.++|.+||..||+..|.++ ++.|+++
T Consensus 154 ~v~~~~~~-~~-~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK-SE-RSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC-SS-SSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEEcCC-CC-CceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99998886 33 369999999999999999999999999886 6777665
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.2e-32 Score=226.79 Aligned_cols=168 Identities=23% Similarity=0.351 Sum_probs=145.0
Q ss_pred eecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 43 ~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
....+.++|||+|||+++|+++|+++|++||. +..+. +.+ ..++.++|||||+|.+.++|++|++ |++. .+.++
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~-~~~~~-~~~-~~~~~~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~ 81 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFA-KNDLA-VVD-VRTGTNRKFGYVDFESAEDLEKALE-LTGL--KVFGN 81 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHH-HHTCC-CCE-EEEETTTTEEEEEESSHHHHHHHHH-GGGE--EETTE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC-cceEE-EEE-CCCCccccEEEEEECCHHHHHHHHh-cCCC--EeCCe
Confidence 34566789999999999999999999999998 66633 333 3577899999999999999999995 8875 78899
Q ss_pred CCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 123 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 123 ~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
.|.|.++.+... ......++|||+|||.++++++|+++|++||.|..+ ..++.++++|||+|.+.++|.+|++
T Consensus 82 ~l~v~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 82 EIKLEKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp EEEEECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred EEEEecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 999999987644 334457999999999999999999999999988776 3445569999999999999999999
Q ss_pred hcCCceeCCcEEEEEeccCCC
Q 019327 203 NTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 203 ~l~~~~~~g~~i~v~~a~~~~ 223 (342)
.||+..|.|+.|+|+|+.++.
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHTEEEETTEEEEEEECSSCC
T ss_pred HhCCCEECCeEEEEEecCCCC
Confidence 999999999999999998763
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.2e-31 Score=225.22 Aligned_cols=167 Identities=17% Similarity=0.333 Sum_probs=146.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhh----C-------CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKI----G-------PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~----G-------~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
..++|||+|||+++|+++|+++|++| | . |.++.+. +++|||||+|.+.++|++|+ .|++.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~-v~~~~~~-------~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP-VLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCS-EEEEEEE-------TTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCc-eEEeEec-------CCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 46899999999999999999999999 4 4 6666554 34899999999999999999 78875
Q ss_pred CCCCCCCCCeeecCCCCCccc----------------ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCC
Q 019327 116 KFKLDDNAPTVSWADPRNAES----------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 179 (342)
Q Consensus 116 ~~~~~~~~i~v~~~~~~~~~~----------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 179 (342)
.+.++.|.|.++....... ......++|||+|||.++++++|+++|++||.|.++.|+.++.
T Consensus 74 --~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 74 --IFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp --EETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred --EEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 7899999999987653211 1124569999999999999999999999999999999999987
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 180 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 180 ~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
++.+++||||+|.+.++|++|++.||+..|+|+.|+|+++.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 888899999999999999999999999999999999999988654
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=5.7e-31 Score=226.18 Aligned_cols=163 Identities=14% Similarity=0.258 Sum_probs=144.5
Q ss_pred ccCCeEEEcCCCC-CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~-~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.+.++|||+|||+ ++++++|+++|++||+ |.+|+|++++ ++||||+|.+.++|++|++.|++. .+.++.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~-i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l 102 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGD-VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGH--KLHGKPI 102 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTC-EEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTC--BCSSSBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCC-eEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCC--eECCeEE
Confidence 4568999999999 9999999999999999 9999999882 789999999999999999999985 7899999
Q ss_pred eeecCCCCCccc-------------------------------ccccCceEEEEecCCCCCCHHHHHHHHhcCC-cEEEE
Q 019327 125 TVSWADPRNAES-------------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKV 172 (342)
Q Consensus 125 ~v~~~~~~~~~~-------------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v 172 (342)
.|.++....... ......++|||+|||.++++++|+++|++|| .|.+|
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 999887542110 0012368999999999999999999999999 99999
Q ss_pred EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC-CcEEEEEeccCC
Q 019327 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAKPQ 222 (342)
Q Consensus 173 ~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~~~ 222 (342)
+|+.+. +++|||+|.+.++|.+|++.||+..+. |+.|+|+|++++
T Consensus 183 ~i~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSSS-----TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEECC-----CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 997642 799999999999999999999999999 999999999864
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=3.6e-31 Score=234.67 Aligned_cols=164 Identities=20% Similarity=0.366 Sum_probs=145.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHH----HHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMR----KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~----~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
..++++|||+|||+++|+++|+ ++|++||. |.+|++++ +++++|||||+|.+.++|++|++.|++. .+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~-i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~ 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQ-ILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGF--PFY 78 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCC-eEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHhcCC--eeC
Confidence 4567899999999999999976 89999999 99999875 4678999999999999999999999985 789
Q ss_pred CCCCeeecCCCCCcc-----------------------------------------------------------------
Q 019327 121 DNAPTVSWADPRNAE----------------------------------------------------------------- 135 (342)
Q Consensus 121 ~~~i~v~~~~~~~~~----------------------------------------------------------------- 135 (342)
++.|.|.|+......
T Consensus 79 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred CcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 999999988664420
Q ss_pred ------------------------------------------cccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEE
Q 019327 136 ------------------------------------------SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 173 (342)
Q Consensus 136 ------------------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~ 173 (342)
.......++|||+|||.++++++|+++|++||.|++|+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 01122458899999999999999999999999999999
Q ss_pred ecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC-CcEEEEEecc
Q 019327 174 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAK 220 (342)
Q Consensus 174 i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~ 220 (342)
|+.++ +++|||+|.+.++|.+|++.||+..|. |+.|+|+|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99764 589999999999999999999999999 9999999986
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.4e-31 Score=220.82 Aligned_cols=161 Identities=14% Similarity=0.260 Sum_probs=143.5
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 48 KHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 48 ~~~l~v~nl~~-~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+++|||+|||+ ++++++|+++|++||. |.+|++++++ +|||||+|.+.++|++|++.|++. .+.++.|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~-i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD-VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGH--KLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC-CSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTC--CCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC-EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCC--eecCeEEEE
Confidence 57999999999 9999999999999999 9999998872 789999999999999999999986 789999999
Q ss_pred ecCCCCCccc-------------------------------ccccCceEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEe
Q 019327 127 SWADPRNAES-------------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVI 174 (342)
Q Consensus 127 ~~~~~~~~~~-------------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i 174 (342)
.++....... ......++|||+|||.++++++|+++|++|| .|.++.|
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred EEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 9887542110 0012378999999999999999999999999 9999999
Q ss_pred cCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC-CcEEEEEeccCC
Q 019327 175 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAKPQ 222 (342)
Q Consensus 175 ~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~~~ 222 (342)
+.+. +++|||+|.+.++|.+|++.||+..+. |+.|+|+|++++
T Consensus 154 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7753 799999999999999999999999999 999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.7e-30 Score=225.42 Aligned_cols=159 Identities=25% Similarity=0.411 Sum_probs=143.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++|+++|+++|+.||. |.+|.+.++ +|||||+|.+.++|++|++.+++. .+.++.|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~ 89 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGT--ILKSRPLR 89 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCc--EECCceeE
Confidence 34579999999999999999999999999 999999765 789999999999999999999986 78899999
Q ss_pred eecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC
Q 019327 126 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 205 (342)
Q Consensus 126 v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 205 (342)
|.++.+. .+|||+|||..+|+++|+++|++||.|.+|.|+.+. ++.+++||||+|.+.++|.+|+..||
T Consensus 90 v~~a~~~----------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 90 IRFATHG----------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp EEECCCS----------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeecccC----------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhc
Confidence 9998754 789999999999999999999999999999999984 56669999999999999999999995
Q ss_pred -CceeC---CcEEEEEeccCCCCC
Q 019327 206 -KYEID---GQVLDCSLAKPQADQ 225 (342)
Q Consensus 206 -~~~~~---g~~i~v~~a~~~~~~ 225 (342)
+..+. +++|.|+++.+....
T Consensus 159 ~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 159 DGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HSCEESSSSCCBCEEEECCCEESS
T ss_pred CCeEEecCCCceEEEeeccccCcc
Confidence 44444 899999999876544
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.4e-29 Score=223.12 Aligned_cols=157 Identities=17% Similarity=0.293 Sum_probs=145.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
++++|||+|||+++|+++|+++|+.|| |.+|.+. +++|||||+|.+.++|++|++.+++. .+.++.|.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G--i~~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v 89 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE--LKYCFVD-------KYKGTAFVTLLNGEQAEAAINAFHQS--RLRERELSV 89 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC--EEEEEEE-------TTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--CEEEEEe-------cCCCEEEEEeCCHHHHHHHHHHcCCC--eeCCeEEEE
Confidence 568999999999999999999999999 8888883 35789999999999999999999986 688999999
Q ss_pred ecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 127 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
.++.+. .+|||+|||.++++++|+++|++||.|.++.|+.+..++.++++|||+|.+.++|.+|++.|++
T Consensus 90 ~~~~~~----------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 90 QLQPTD----------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp EECCCS----------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EecCCC----------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 986543 7999999999999999999999999999999999988888899999999999999999999999
Q ss_pred ceeCCcEEEEEeccCCCC
Q 019327 207 YEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 207 ~~~~g~~i~v~~a~~~~~ 224 (342)
..+.|+.|.|.++.++..
T Consensus 160 ~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CEETTEECEEEECCGGGC
T ss_pred CEeCCcEEEEEECCCCCC
Confidence 999999999999987654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.9e-29 Score=223.53 Aligned_cols=163 Identities=17% Similarity=0.335 Sum_probs=138.5
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
...+.++|||+|||+++|+++|+++|+.||+ |.+|+|++++ . .+++||||+|.+.++|++|++ +++. .+.++.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~--~-~~~g~afV~f~~~~~A~~A~~-~~~~--~~~g~~ 109 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGP-IIHVDVADSL--K-KNFRFARIEFARYDGALAAIT-KTHK--VVGQNE 109 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSC-EEEEEEEECT--T-SSSEEEEEEESSHHHHHHHHT-TTTC--EETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEECC--C-CCcEEEEEEECCHHHHHHHHH-hCCc--EeCCcE
Confidence 3456789999999999999999999999999 9999999982 2 258999999999999999995 7764 889999
Q ss_pred CeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 019327 124 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 202 (342)
Q Consensus 124 i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 202 (342)
|.|.++. .++|||+|||.++++++|+++|++|| .|.+|.|+.++.+ .+++||||+|.+.++|.+|++
T Consensus 110 i~v~~~~-----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~-~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 110 IIVSHLT-----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFN-TSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CEEEECC-----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEEECC-----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCC-CcceEEEEEECCHHHHHHHHH
Confidence 9998763 48999999999999999999999999 9999999998774 459999999999999999999
Q ss_pred hcCCceeCCcEEEEEeccCCCCC
Q 019327 203 NTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 203 ~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
.||+..|.|+.|.|.++.+....
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHTTCEETTEECEEEECCCC---
T ss_pred HhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999999999876543
No 21
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=2e-25 Score=182.07 Aligned_cols=126 Identities=25% Similarity=0.441 Sum_probs=115.0
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc------cCCeEEEcCCCCCCCHHHHHHHHHhhCCC
Q 019327 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ------AKHRLFIGNVPRNWGEDDMRKAVTKIGPG 75 (342)
Q Consensus 2 ~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~------~~~~l~v~nl~~~~te~~l~~~f~~~G~~ 75 (342)
+++.+++++|||||+|.+.++|.+|++.+++..+.++.|.|.++. +.++|||+|||.++++++|+++|++||.
T Consensus 37 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~- 115 (168)
T 1b7f_A 37 RDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGS- 115 (168)
T ss_dssp EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSC-
T ss_pred EeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCc-
Confidence 567799999999999999999999999999999999999999876 4579999999999999999999999999
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 76 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 76 v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
|..+.++++ ..++.++|||||+|.+.++|.+|++.|++..+...++.|.|++|
T Consensus 116 i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 116 IVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999998 56889999999999999999999999999744334499999875
No 22
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=2.3e-25 Score=189.32 Aligned_cols=130 Identities=25% Similarity=0.404 Sum_probs=117.5
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc-----------------CCeEEEcCCCCCCCHH
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA-----------------KHRLFIGNVPRNWGED 63 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~-----------------~~~l~v~nl~~~~te~ 63 (342)
++|+.+++++|||||+|.+.++|.+|++.||+..|.++.|.|.++.. .++|||+|||.++|++
T Consensus 61 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~ 140 (216)
T 2qfj_A 61 SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD 140 (216)
T ss_dssp CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHH
T ss_pred eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHH
Confidence 36778999999999999999999999999999999999999987543 3699999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 64 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 64 ~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
+|+++|++||+ |+.|+++++ ..++.++|||||+|.+.++|.+|++.|++. .++++.|.|.++.+...
T Consensus 141 ~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 141 DIKSVFEAFGK-IKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSMNLF--DLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHTTSSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--BCSSSBCEEEECSSCSS
T ss_pred HHHHHHhccCC-eeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHccCC--EeCCcEEEEEEecCCCC
Confidence 99999999999 999999999 578899999999999999999999999986 78999999999987754
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=7.7e-26 Score=191.93 Aligned_cols=128 Identities=23% Similarity=0.402 Sum_probs=117.7
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------CCeEEEcCCCCCCCHHHHHHHHHhh
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------KHRLFIGNVPRNWGEDDMRKAVTKI 72 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------~~~l~v~nl~~~~te~~l~~~f~~~ 72 (342)
++|+.|++++|||||+|.+.++|.+|++.+|+..+.++.|++.++.. .++|||+|||+++|+++|+++|++|
T Consensus 48 ~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 127 (213)
T 4f02_A 48 CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 127 (213)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGG
T ss_pred ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhc
Confidence 36889999999999999999999999999999999999999988763 3589999999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 73 G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
|. |++|+|++| .+.++|||||+|.+.++|++|++.|++. .++++.|.|.++.++..
T Consensus 128 G~-i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~--~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 128 GN-ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp SC-EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCHHH
T ss_pred CC-eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEcCCCcc
Confidence 99 999999998 3457999999999999999999999986 78999999999987643
No 24
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=5.8e-25 Score=178.97 Aligned_cols=124 Identities=27% Similarity=0.457 Sum_probs=113.3
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc------CCeEEEcCCCCCCCHHHHHHHHHhhCCC
Q 019327 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA------KHRLFIGNVPRNWGEDDMRKAVTKIGPG 75 (342)
Q Consensus 2 ~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~------~~~l~v~nl~~~~te~~l~~~f~~~G~~ 75 (342)
+|+.+|+++|||||+|.+.++|.+|++.+++..+.++.|+|.++.+ .++|||+|||.++++++|+++|++||.
T Consensus 36 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~- 114 (167)
T 1fxl_A 36 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR- 114 (167)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC-
T ss_pred eCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC-
Confidence 4667999999999999999999999999999999999999998764 368999999999999999999999999
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC--CCeeecC
Q 019327 76 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN--APTVSWA 129 (342)
Q Consensus 76 v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~--~i~v~~~ 129 (342)
|.+++++.+ ..++.++|||||+|.+.++|.+|++.|++. .+.++ +|.|+||
T Consensus 115 i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 115 IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCTTCSSCCEEEEC
T ss_pred EeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHhcCC--ccCCCccceEEEeC
Confidence 999999998 568899999999999999999999999997 56665 4777765
No 25
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=2.1e-25 Score=182.63 Aligned_cols=122 Identities=26% Similarity=0.521 Sum_probs=113.3
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC------CeEEEcCCCCCCCHHHHHHHHHhhCCCeE
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------HRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~------~~l~v~nl~~~~te~~l~~~f~~~G~~v~ 77 (342)
..+++++|||||+|.+.++|.+|+ .+|+..+.|+.|+|.++... ++|||+|||+++|+++|+++|++||+ |.
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~ 122 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP-LK 122 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC-EE
T ss_pred eEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC-ce
Confidence 345788999999999999999999 79999999999999987754 89999999999999999999999999 99
Q ss_pred EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCC
Q 019327 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 130 (342)
Q Consensus 78 ~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~ 130 (342)
+|.++++ ..++.++|||||+|.+.++|++|++.|++. .++++.|.|+|+.
T Consensus 123 ~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~As 172 (172)
T 2g4b_A 123 AFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEC-TTTCSEEEEEEEEESSTTHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred EEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHcCCC--EECCeEEEEEeCC
Confidence 9999999 568999999999999999999999999986 7899999999874
No 26
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.92 E-value=7e-25 Score=183.43 Aligned_cols=128 Identities=20% Similarity=0.426 Sum_probs=113.1
Q ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccC------------CeEEEcCCCCCCCHHHHHHHH
Q 019327 2 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAV 69 (342)
Q Consensus 2 ~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~------------~~l~v~nl~~~~te~~l~~~f 69 (342)
+|+.|++++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.+. ++|||+|||+++|+++|+++|
T Consensus 47 ~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 47 RDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred EcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 5778999999999999999999999985 889999999999887532 789999999999999999999
Q ss_pred HhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc
Q 019327 70 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 70 ~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~ 135 (342)
++||. |..|.++.+ ..++.++|||||+|.+.++|++|++. ++ ..++++.|.|.++.++...
T Consensus 126 ~~~G~-i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~-~~--~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 126 EQYGK-IEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ-KY--HTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp TTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC-SC--CEETTEECEEEECC-----
T ss_pred hcCCC-eEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh-CC--cEECCEEEEEEecCChhHh
Confidence 99999 999999999 57899999999999999999999986 44 4899999999999887653
No 27
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-24 Score=176.51 Aligned_cols=121 Identities=21% Similarity=0.421 Sum_probs=112.5
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------CCeEEEcCCCCCCCHHHHHHHHHhhCCCeE
Q 019327 6 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 77 (342)
Q Consensus 6 tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------~~~l~v~nl~~~~te~~l~~~f~~~G~~v~ 77 (342)
+++++|||||+|.+.++|.+|++.+|+..+.++.|.|.++.+ .++|||+|||.++|+++|+++|++||. |.
T Consensus 37 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~ 115 (166)
T 3md3_A 37 NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS-YL 115 (166)
T ss_dssp C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT-EE
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCC-ee
Confidence 578999999999999999999999999999999999988753 358999999999999999999999999 99
Q ss_pred EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCC
Q 019327 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 130 (342)
Q Consensus 78 ~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~ 130 (342)
++.++.+ ..++.++|||||+|.+.++|.+|++.|++. .++++.|.|.|+.
T Consensus 116 ~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~ 165 (166)
T 3md3_A 116 SGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESC
T ss_pred EEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEEEEecC
Confidence 9999998 578999999999999999999999999986 7899999999986
No 28
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=5e-24 Score=172.15 Aligned_cols=145 Identities=21% Similarity=0.339 Sum_probs=115.8
Q ss_pred EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC-----CCCCCCCCCeeecCCCCCc--ccccccCceEEEEecC
Q 019327 78 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP-----KFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNL 150 (342)
Q Consensus 78 ~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~-----~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~l~v~~l 150 (342)
+++|+.+ ..+++||+||+|.+.++|++|++.+++. ...+++............. .........+|||+||
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 4677777 3368999999999999999999887642 1122233333222221111 1133345799999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 151 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 151 ~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
|+++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|++++++...
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999888888999999999999999999999999999999999999876543
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=4.2e-25 Score=185.09 Aligned_cols=125 Identities=26% Similarity=0.505 Sum_probs=115.5
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------------------------CCeEEEcCCC
Q 019327 4 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------------------------KHRLFIGNVP 57 (342)
Q Consensus 4 ~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------------------------~~~l~v~nl~ 57 (342)
..+++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++++ .++|||+|||
T Consensus 45 ~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 123 (198)
T 2yh0_A 45 VQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLP 123 (198)
T ss_dssp EEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCC
T ss_pred eEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCC
Confidence 446789999999999999999999 7999999999999987643 3799999999
Q ss_pred CCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCC
Q 019327 58 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 133 (342)
Q Consensus 58 ~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~ 133 (342)
+++++++|+++|++||. |.+|.++++ ..++.++|||||+|.+.++|++|++.|++. .++++.|.|.++.+..
T Consensus 124 ~~~~~~~l~~~f~~~G~-v~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 124 NYLNDDQVKELLTSFGP-LKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRASVGA 195 (198)
T ss_dssp TTCCHHHHHHHHHTBSC-EEEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHHTTC--EETTEECEEEESCCCC
T ss_pred CCCCHHHHHHHHHHcCC-ccEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCC
Confidence 99999999999999999 999999998 568999999999999999999999999986 7899999999998764
No 30
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=3.6e-24 Score=175.67 Aligned_cols=126 Identities=24% Similarity=0.429 Sum_probs=109.9
Q ss_pred CCCCCC--CccceEEEEeCCHHHHHHHHHHhCCCccC---CeEEEEeecc-------cCCeEEEcCCCCCCCHHHHHHHH
Q 019327 2 KGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELK---GKKIKCSAAQ-------AKHRLFIGNVPRNWGEDDMRKAV 69 (342)
Q Consensus 2 ~~~~tg--~~~G~afV~f~~~e~A~~a~~~~~g~~~~---g~~i~v~~~~-------~~~~l~v~nl~~~~te~~l~~~f 69 (342)
+|+.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.+.+++ ..++|||+|||+++|+++|+++|
T Consensus 37 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 37 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp EECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred ecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 455665 89999999999999999999999998775 5777777655 45789999999999999999999
Q ss_pred HhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC-CCCCeeecCC
Q 019327 70 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD-DNAPTVSWAD 130 (342)
Q Consensus 70 ~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~-~~~i~v~~~~ 130 (342)
++||. |.+|.++++ .++.++|||||+|.+.++|.+|++.|++..+... +++|.|.|+.
T Consensus 117 ~~~G~-i~~v~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 117 SSFGQ-IEECRILRG--PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GGGSC-EEEEEEEEC--TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HhCCC-EEEEEEEEC--CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999 999999998 4689999999999999999999999998633221 5999999874
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=1.2e-24 Score=177.22 Aligned_cols=125 Identities=22% Similarity=0.468 Sum_probs=113.8
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc------CCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA------KHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~------~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
++|+.||+++|||||+|.+.++|.+|++. +..+.|+.|.+.++.+ .++|||+|||+++|+++|+++|++||.
T Consensus 36 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 113 (167)
T 2cjk_A 36 MKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT 113 (167)
T ss_dssp CCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC
T ss_pred EECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc
Confidence 46778999999999999999999999984 5789999999987753 469999999999999999999999999
Q ss_pred CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 75 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 75 ~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
|.+|.++.+ ..++.++|||||+|.+.++|++|++ +++ ..++++.|.|.|+.++
T Consensus 114 -i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~~--~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 114 -IIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-NKF--IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp -CSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-CSE--ECSSSSCEEEEECCCC
T ss_pred -EEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-CCC--EEeCCeEEEEeecCCC
Confidence 999999998 5789999999999999999999998 665 4889999999999875
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=7.3e-25 Score=180.04 Aligned_cols=122 Identities=19% Similarity=0.370 Sum_probs=111.1
Q ss_pred CCCCCCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc--------CCeEEEcCCCCCCCHHHHHHHHHhh
Q 019327 1 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA--------KHRLFIGNVPRNWGEDDMRKAVTKI 72 (342)
Q Consensus 1 ~~~~~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~--------~~~l~v~nl~~~~te~~l~~~f~~~ 72 (342)
|++..+++++|||||+|.+.++|.+|++ +|+..+.|+.|.|.++.+ .++|||+|||.++|+++|+++|++|
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~ 123 (175)
T 1fje_B 45 VVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA 123 (175)
T ss_dssp CCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTC
T ss_pred EEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4567789999999999999999999995 999999999999998763 4799999999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 73 G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
|+ |..+ . .++.++|||||+|.+.++|.+|++.|++. .++++.|.|+|+.++
T Consensus 124 g~-v~~~----~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 124 LE-IRLV----S--QDGKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEK 174 (175)
T ss_dssp SE-EEEE----C--SSSSCCSEEEEECSSHHHHHHHHHHHTEE--EETTEEEEEEECSSC
T ss_pred Ce-EEEe----c--CCCCCceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEecCCC
Confidence 98 7765 3 57889999999999999999999999985 789999999999875
No 33
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=2.6e-23 Score=167.96 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=105.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe-------------------ecccCCeEEEcCCCCCCCHHHHHH
Q 019327 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS-------------------AAQAKHRLFIGNVPRNWGEDDMRK 67 (342)
Q Consensus 7 g~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~-------------------~~~~~~~l~v~nl~~~~te~~l~~ 67 (342)
.+++|||||+|.+.++|++|++.+++.......+.+. .....++|||+|||+++|+++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 3799999999999999999999887643322222221 122457999999999999999999
Q ss_pred HHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 68 AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 68 ~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
+|++||+ |.+|+|+++ ..++.++|||||+|.+.++|++|++.|++. .+.++.|.|.++.+...
T Consensus 90 ~F~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 90 VFEKYGR-VGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHSC-EEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSC
T ss_pred HHHhcCC-eEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCC
Confidence 9999999 999999998 578999999999999999999999999985 78999999999987654
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=5.6e-23 Score=179.74 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=113.7
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCC
Q 019327 7 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 86 (342)
Q Consensus 7 g~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~ 86 (342)
.+++|||||+|.+.++|.+|++.+|+..|.++.|.|.++.+.++|||+|||..+|+++|+++|+.||. |.+|.|+.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~-- 131 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGP-VEKAVVVVD-- 131 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE--
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCC-eEEEEeeeC--
Confidence 46799999999999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred CCCCCceEEEEEecCHHHHHHHHHHhCCCCC--CCCCCCCeeecCCCCC
Q 019327 87 NANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRN 133 (342)
Q Consensus 87 ~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~--~~~~~~i~v~~~~~~~ 133 (342)
.++.++|||||+|.+.++|.+|++.|++..+ ...+++|.|.++.+..
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 5899999999999999999999999955322 2348899999987654
No 35
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=2.2e-22 Score=160.96 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=112.3
Q ss_pred CCCCceEEEEEecCHHHHHHHHHHh-CCCCCCCCCCCCeeecCCCCCc------------ccccccCceEEEEecCCCCC
Q 019327 88 ANQNRGFAFIEYYNHACAEYSRQKM-SNPKFKLDDNAPTVSWADPRNA------------ESSAASQVKALYVKNLPKDI 154 (342)
Q Consensus 88 ~g~~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~~~~i~v~~~~~~~~------------~~~~~~~~~~l~v~~l~~~~ 154 (342)
....+|+++|+|.+.++|++|++.+ ++. .+++ .+.+.++..... ........++|||+|||+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 4467899999999999999999999 875 7788 899988765321 12334557999999999999
Q ss_pred CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCC
Q 019327 155 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 223 (342)
Q Consensus 155 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 223 (342)
++++|+++|++||.|.+|.|+.+ +++||||+|.+.++|++|++.||+..|.|+.|+|++++++.
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999987 38999999999999999999999999999999999998764
No 36
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=2e-22 Score=169.38 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=96.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc-----------------------------------------
Q 019327 9 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----------------------------------------- 47 (342)
Q Consensus 9 ~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~----------------------------------------- 47 (342)
++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++.
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 589999999999999999999999999999999987631
Q ss_pred --CCeEEEcCCCCCCCHHHHHHHHHhhCCCe--EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 48 --KHRLFIGNVPRNWGEDDMRKAVTKIGPGV--ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 48 --~~~l~v~nl~~~~te~~l~~~f~~~G~~v--~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
.++|||+|||+++|+++|+++|++||. | .+|+++.+ .+.++++|||+|.+.++|.+|++.||+. .+.++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~-v~~~~v~~~~~---~~~~~g~gfV~f~~~~~A~~Ai~~lng~--~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGV-KRPTSVKVFSG---KSERSSSGLLEWDSKSDALETLGFLNHY--QMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTC-CCCSEEEECSC---CSSSSEEEEEECSSHHHHHHHHHHHTTC--EECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEEEcC---CCCCceEEEEEeCCHHHHHHHHHHhCCC--CccCC
Confidence 236999999999999999999999999 8 89999887 2556799999999999999999999996 45444
No 37
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.88 E-value=3.2e-22 Score=177.03 Aligned_cols=117 Identities=25% Similarity=0.378 Sum_probs=106.8
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc-------------------------------------
Q 019327 5 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA------------------------------------- 47 (342)
Q Consensus 5 ~tg~~~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~------------------------------------- 47 (342)
.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+++.
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (282)
T 3pgw_A 47 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQ 126 (282)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhcc
Confidence 3889999999999999999999999999999999999987543
Q ss_pred --------------------------------------------------------------------------------
Q 019327 48 -------------------------------------------------------------------------------- 47 (342)
Q Consensus 48 -------------------------------------------------------------------------------- 47 (342)
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (282)
T 3pgw_A 127 GGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206 (282)
T ss_pred CcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCC
Confidence
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC-CCCCee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD-DNAPTV 126 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~-~~~i~v 126 (342)
.++|||+|||.++|+++|+++|++||. |.+|+|+.+ . +|||||+|.+.++|.+|++.|++. .++ ++.|.|
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~-i~~v~~~~~-~-----~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v 277 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPG-FKEVRLVPG-R-----HDIAFVEFDNEVQAGAARDALQGF--KITQNNAMKI 277 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCC-eEEEEEecC-C-----CcEEEEEeCCHHHHHHHHHHcCCc--EeCCCCEEEE
Confidence 246999999999999999999999999 999999977 1 589999999999999999999995 677 999999
Q ss_pred ecCC
Q 019327 127 SWAD 130 (342)
Q Consensus 127 ~~~~ 130 (342)
.|+.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9975
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=4.3e-22 Score=159.25 Aligned_cols=117 Identities=18% Similarity=0.296 Sum_probs=107.1
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEeeccc----------------------CCeEEEcCCCCCCCH
Q 019327 6 SGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSAAQA----------------------KHRLFIGNVPRNWGE 62 (342)
Q Consensus 6 tg~~~G~afV~f~~~e~A~~a~~~~-~g~~~~g~~i~v~~~~~----------------------~~~l~v~nl~~~~te 62 (342)
....+|+++|+|.+.++|++|++.+ |+..+.| .+.+.++.. .++|||+|||+++|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3477999999999999999999999 9999999 999876542 369999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 63 ~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
++|+++|++||+ |.+|+++++ ++|||||+|.+.++|++|++.|++. .++++.|.|+++.+.
T Consensus 88 ~~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCC
Confidence 999999999999 999999876 5899999999999999999999985 789999999999875
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.4e-22 Score=154.44 Aligned_cols=105 Identities=22% Similarity=0.403 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
.++|||+|||+++|+++|+++|++||+ |.+|+|+++ .+.++|||||+|.+.++|++|++.|++. .++++.|.|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~i~~d---~~~~kg~afV~f~~~~~A~~Ai~~l~~~--~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN-ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE---TTEEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC-EEEEEEeec---CCCCCceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEE
Confidence 568999999999999999999999999 999999998 3458999999999999999999999986 7899999999
Q ss_pred cCCCCCccc----ccccCceEEEEecCCCCCCHHH
Q 019327 128 WADPRNAES----SAASQVKALYVKNLPKDITQDR 158 (342)
Q Consensus 128 ~~~~~~~~~----~~~~~~~~l~v~~l~~~~~~~~ 158 (342)
++.++.... ......++|||+|||+++|++.
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESSCCCC----------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 988765432 2333457899999999999863
No 40
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=1e-21 Score=168.33 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=104.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc-----------------------------------------C
Q 019327 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA-----------------------------------------K 48 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~-----------------------------------------~ 48 (342)
+|||||+|.+.++|.+|++.||+..+.|+.|.|.+++. .
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 89999999999999999999999999999999987652 3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhC-CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC-CCCCee
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD-DNAPTV 126 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G-~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~-~~~i~v 126 (342)
++|||+|||.++++++|+++|++|| + |.+|+++.+ +++||||+|.+.++|.+|++.|++. .+. ++.|.|
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~--~~~~g~~l~v 222 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGV-VKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNH--DLGENHHLRV 222 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCC-EEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTC--BSSSSCBCEE
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCC-eeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCC--ccCCCCeEEE
Confidence 6799999999999999999999999 8 999999764 3689999999999999999999996 667 999999
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
.|+.+.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 998764
No 41
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=163.71 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=104.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc-----------------------------------------C
Q 019327 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA-----------------------------------------K 48 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~-----------------------------------------~ 48 (342)
+|||||+|.+.++|.+|++.||+..+.|+.|.|.+++. .
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 89999999999999999999999999999999987642 4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhC-CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC-CCCCee
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD-DNAPTV 126 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G-~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~-~~~i~v 126 (342)
++|||+|||.++++++|+++|++|| . |.+|+++.+ .+++|||+|.+.++|.+|++.|++. .++ ++.|.|
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~-v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v 191 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGV-VKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNH--DLGENHHLRV 191 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSC-CCEEEESST------TSSCEEEECSSHHHHHHHHHHHTSS--CCSSCCSCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCC-ceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCC--ccCCCCeEEE
Confidence 6799999999999999999999999 8 999999775 2789999999999999999999996 667 999999
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
.|+.+.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998764
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=142.31 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=77.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
+.++|||+|||.++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999999988889999999999999999999999999999999999998
Q ss_pred C
Q 019327 221 P 221 (342)
Q Consensus 221 ~ 221 (342)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 43
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=9.6e-22 Score=183.06 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=80.4
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+.+|+++|.++|++||.|+.|.|+.++.++.+++||||+|.+.++|++||..||+..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987553
No 44
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=5.3e-21 Score=149.75 Aligned_cols=126 Identities=19% Similarity=0.293 Sum_probs=84.4
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEE
Q 019327 93 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172 (342)
Q Consensus 93 g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v 172 (342)
-++|++|.+...+..|++.+++. ...++ -...+..+. ......++|||+|||+++++++|+++|++||.|++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~--~~~g~-~~~~~~~~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 77 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGG--QQMGR-GSMSYGRPP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV 77 (135)
T ss_dssp ---------------------------------CCSCCSC----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE
T ss_pred ccccccccCCCchhhhhhhccCC--CCCCC-CCCCcCCCC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 36788888888888999888774 22222 223333332 344456899999999999999999999999999999
Q ss_pred EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 173 ~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|++++++...
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999888888999999999999999999999999999999999999876544
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=137.41 Aligned_cols=84 Identities=19% Similarity=0.382 Sum_probs=77.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC-CceeCCcEEEEEec
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE-KYEIDGQVLDCSLA 219 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~a 219 (342)
+++|||+|||.++|+++|+++|++|| .|++|+|++++.++.++|||||+|.+.++|++|++.++ +..+.|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999899999999999999999999874 56899999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=136.89 Aligned_cols=80 Identities=28% Similarity=0.516 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
.++|||+|||+++|+++|+++|++||+ |.+|+|++| ..+++++|||||+|.+.++|++|++.|++. .++++.|.|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVTAKDAERAINTLNGL--RLQSKTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-SSSCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEeEeeec-CCCCcccccEEEEECCHHHHHHHHHHhCCC--EECCEEEEEE
Confidence 468999999999999999999999999 999999999 678999999999999999999999999986 7899999999
Q ss_pred cCCC
Q 019327 128 WADP 131 (342)
Q Consensus 128 ~~~~ 131 (342)
|+.|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9976
No 47
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=3.4e-20 Score=150.54 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=80.6
Q ss_pred EEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC----------------CcccccccCceEEEEecCCCCCCHHHHH
Q 019327 97 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR----------------NAESSAASQVKALYVKNLPKDITQDRLK 160 (342)
Q Consensus 97 V~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 160 (342)
.+|++.++|+.++..++.....-.++.+...+.... ..........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999888755555665555542211 0011233446889999999999999999
Q ss_pred HHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCCC
Q 019327 161 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 226 (342)
Q Consensus 161 ~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 226 (342)
++|++||.|..|.|+.++.++.+++||||+|.+.++|++||+.||+..|.|+.|.|.|+.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999998888889999999999999999999999999999999999998776543
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=131.79 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=81.1
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||+++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45699999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=137.17 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=79.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
+.++|||+||++++++++|+++|++||.|++|+|+.|+.++.++|||||+|++.++|++|++.||+..|.|+.|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999988889999999999999999999999999999999999997
Q ss_pred CCCC
Q 019327 221 PQAD 224 (342)
Q Consensus 221 ~~~~ 224 (342)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6543
No 50
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=134.44 Aligned_cols=81 Identities=16% Similarity=0.344 Sum_probs=75.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCc--EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCc----eeCCcEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY----EIDGQVL 214 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~----~~~g~~i 214 (342)
.-.+|||+|||+++|+++|+++|++||. |.+|+|++|+.++.+||||||+|.+.++|++|++.||+. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3589999999999999999999999995 669999999999999999999999999999999999986 5999999
Q ss_pred EEEeccC
Q 019327 215 DCSLAKP 221 (342)
Q Consensus 215 ~v~~a~~ 221 (342)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=130.27 Aligned_cols=85 Identities=27% Similarity=0.494 Sum_probs=80.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||.++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 019327 221 PQADQ 225 (342)
Q Consensus 221 ~~~~~ 225 (342)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76643
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=130.83 Aligned_cols=87 Identities=23% Similarity=0.452 Sum_probs=80.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++ ||+..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456999999999999999999999999999999999998888889999999999999999999 899999999999999
Q ss_pred ccCCCCCC
Q 019327 219 AKPQADQK 226 (342)
Q Consensus 219 a~~~~~~~ 226 (342)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876543
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.4e-19 Score=127.38 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=78.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
+.+|||+|||.++++++|+++|++||.|.++.|+.+..++.+++||||+|.+.++|++|++.||+..+.|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CC
Q 019327 222 QA 223 (342)
Q Consensus 222 ~~ 223 (342)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=1.1e-18 Score=132.79 Aligned_cols=89 Identities=21% Similarity=0.344 Sum_probs=82.5
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44557999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999876543
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-19 Score=131.71 Aligned_cols=88 Identities=23% Similarity=0.386 Sum_probs=82.1
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44456999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887654
No 56
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.8e-19 Score=143.82 Aligned_cols=86 Identities=22% Similarity=0.376 Sum_probs=80.8
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||.++++++|+++|++||.|++|.|+.++.+..+++||||+|.+.++|++||+.||+..|.++.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45699999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 57
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=4.1e-20 Score=157.73 Aligned_cols=83 Identities=22% Similarity=0.234 Sum_probs=77.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
..++|||+||++++|+++|+++|++|| .|++|+|+.++.+..+++||||+|++.++|++||+.||+..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999998888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
++++.
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97654
No 58
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=131.66 Aligned_cols=87 Identities=25% Similarity=0.407 Sum_probs=81.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34569999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019327 219 AKPQADQ 225 (342)
Q Consensus 219 a~~~~~~ 225 (342)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=128.72 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=76.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||.++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|++.||+..+.|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CC
Q 019327 221 PQ 222 (342)
Q Consensus 221 ~~ 222 (342)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=131.79 Aligned_cols=88 Identities=25% Similarity=0.479 Sum_probs=82.1
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34557999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987654
No 61
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=130.49 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=80.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEE-EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
..++|||+|||.++++++|+++|++||.|.++ .|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 99999888888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 62
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=131.77 Aligned_cols=87 Identities=28% Similarity=0.458 Sum_probs=80.3
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||+++++++|+++|++||.|++|+|+.++.+..+++||||+|.+.++|++|++.+++ .|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445579999999999999999999999999999999999998888899999999999999999999998 899999999
Q ss_pred EeccCCCC
Q 019327 217 SLAKPQAD 224 (342)
Q Consensus 217 ~~a~~~~~ 224 (342)
+++.+...
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99986554
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=131.95 Aligned_cols=88 Identities=27% Similarity=0.459 Sum_probs=81.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|++|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34569999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019327 219 AKPQADQK 226 (342)
Q Consensus 219 a~~~~~~~ 226 (342)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 64
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=130.99 Aligned_cols=90 Identities=22% Similarity=0.409 Sum_probs=82.4
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCC-CCCCCCCceEEEEeCCHHHHHHHHHhc-CCceeCCcEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA-KPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVL 214 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i 214 (342)
......++|||+|||.++++++|+++|++||.|++|.|+.+ +.+..+++||||+|.+.++|++|++.| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34455799999999999999999999999999999999999 777888999999999999999999999 9999999999
Q ss_pred EEEeccCCCCCC
Q 019327 215 DCSLAKPQADQK 226 (342)
Q Consensus 215 ~v~~a~~~~~~~ 226 (342)
+|++++++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999876543
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=131.40 Aligned_cols=88 Identities=20% Similarity=0.377 Sum_probs=81.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC------CceeCCc
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE------KYEIDGQ 212 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~------~~~~~g~ 212 (342)
....++|||+|||+++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999888889999999999999999999999 9999999
Q ss_pred EEEEEeccCCCCCC
Q 019327 213 VLDCSLAKPQADQK 226 (342)
Q Consensus 213 ~i~v~~a~~~~~~~ 226 (342)
.|+|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876543
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=132.04 Aligned_cols=88 Identities=26% Similarity=0.450 Sum_probs=81.8
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|++|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34569999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019327 219 AKPQADQK 226 (342)
Q Consensus 219 a~~~~~~~ 226 (342)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 67
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=9.3e-20 Score=142.64 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=79.4
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe------ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCC
Q 019327 12 YAFVTFRTKELASQAIEELNSCELKGKKIKCS------AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 85 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~------~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~ 85 (342)
++|++|.+...|..||+.+++....++. .+. ...+.++|||+|||+++|+++|+++|++||+ |.+|+|+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~- 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR-VGDVYIPRD- 82 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC-CSEEECCCC-
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-
Confidence 6788888899999999998876555432 112 2234579999999999999999999999999 999999998
Q ss_pred CCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcc
Q 019327 86 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 86 ~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~ 135 (342)
..++.++|||||+|.+.++|++|++.|++. .++++.|.|+|+.+....
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTC--CSSSSCCEEEECCCCCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCCCC
Confidence 578899999999999999999999999986 789999999999877543
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=9.7e-19 Score=128.66 Aligned_cols=83 Identities=18% Similarity=0.428 Sum_probs=79.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
+++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..+.|+.|+|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 48999999999999999999999999999999999988888899999999999999999999999999999999999988
Q ss_pred CCC
Q 019327 222 QAD 224 (342)
Q Consensus 222 ~~~ 224 (342)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=5.2e-19 Score=134.67 Aligned_cols=89 Identities=20% Similarity=0.394 Sum_probs=82.3
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|++|+|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 33456899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
+++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999876543
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.5e-19 Score=126.93 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=76.9
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||.++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|++.||+..+.|+.|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45699999999999999999999999999999999999888888999999999999999999999999999999999998
Q ss_pred c
Q 019327 220 K 220 (342)
Q Consensus 220 ~ 220 (342)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=132.05 Aligned_cols=85 Identities=21% Similarity=0.424 Sum_probs=78.9
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||.++++++|+++|++||.|++|.|+.++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 6667999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876643
No 72
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.9e-19 Score=135.28 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=75.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
..+|||+|||+++++++|+++|++||.|.+|+|+.++.+ +++||||+|++.++|++||+.||+..|.|+.|+|+++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC--CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 478999999999999999999999999999999988643 589999999999999999999999999999999999987
Q ss_pred CCCC
Q 019327 222 QADQ 225 (342)
Q Consensus 222 ~~~~ 225 (342)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6544
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=129.47 Aligned_cols=86 Identities=15% Similarity=0.378 Sum_probs=79.4
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 66669999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9988764
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=127.32 Aligned_cols=83 Identities=28% Similarity=0.459 Sum_probs=78.1
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34456899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred ecc
Q 019327 218 LAK 220 (342)
Q Consensus 218 ~a~ 220 (342)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=129.96 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=75.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++||++|+++|++||+ |++|+|+++ ||||||+|++.++|++|++.+++....+.++.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~-V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 346789999999999999999999999999 999999876 799999999999999999998765567899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|+|+.++...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999887654
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=130.51 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=73.9
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC--CceeCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 217 (342)
...++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|++.++|++|++.|+ +..|.|+.|+|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34699999999999999999999999999999999987 7999999999999999999886 478999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
|++++....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998876543
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=132.22 Aligned_cols=84 Identities=20% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhC-CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G-~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+++|||+|||+++||++|+++|++|| + |.+|+|++| ..++.++|||||+|.+.++|++|++.+++. +.++++.|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~-v~~v~i~~d-~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQ-AREVRLMRN-KSSGQSRGFAFVEFSHLQDATRWMEANQHS-LNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCC-CSBCCSSSC-SSSCCCSSEEEEECSSHHHHHHHHHTTTTE-EEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCE-eEEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHhcCCC-eEECCEEEEE
Confidence 36899999999999999999999999 6 999999999 688999999999999999999999987542 5789999999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
+++.++..
T Consensus 78 ~~a~~~~~ 85 (91)
T 2lxi_A 78 HYSDPKPK 85 (91)
T ss_dssp ECCCSCCC
T ss_pred EEcCCCCC
Confidence 99988754
No 78
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=127.33 Aligned_cols=88 Identities=25% Similarity=0.400 Sum_probs=79.9
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||+++++++|+++|++||.|.+|.|+.++.+ +++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34455699999999999999999999999999999999998754 5899999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 019327 217 SLAKPQADQK 226 (342)
Q Consensus 217 ~~a~~~~~~~ 226 (342)
+++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999876543
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=136.09 Aligned_cols=89 Identities=26% Similarity=0.437 Sum_probs=82.3
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||.++++++|+++|++||.|++|.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34455799999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 019327 217 SLAKPQADQ 225 (342)
Q Consensus 217 ~~a~~~~~~ 225 (342)
++++++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999877644
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=1.7e-18 Score=130.72 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=81.3
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
++.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987664
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.5e-18 Score=130.13 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=81.5
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee---CCcEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI---DGQVL 214 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~---~g~~i 214 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344569999999999999999999999999999999999998888899999999999999999999999887 89999
Q ss_pred EEEeccCCCCC
Q 019327 215 DCSLAKPQADQ 225 (342)
Q Consensus 215 ~v~~a~~~~~~ 225 (342)
+|+++.++...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999887654
No 82
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=6.7e-19 Score=132.59 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=77.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|+|++| ..+++++|||||+|.+.++|++|++.||+. .++++.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~-i~~v~i~~d-~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~--~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGE-VEEVEILLH-PRTRKHLGLARVLFTSTRGAKETVKNLHLT--SVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCC-eeEEEEEEC-CCCCceeeEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 35689999999999999999999999999 999999999 678999999999999999999999999996 78999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
|.++...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9998655
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=131.10 Aligned_cols=86 Identities=24% Similarity=0.454 Sum_probs=80.6
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccCCC
Q 019327 218 LAKPQA 223 (342)
Q Consensus 218 ~a~~~~ 223 (342)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998765
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=127.90 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=78.8
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccC
Q 019327 218 LAKP 221 (342)
Q Consensus 218 ~a~~ 221 (342)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 85
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-18 Score=127.41 Aligned_cols=87 Identities=28% Similarity=0.399 Sum_probs=79.1
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.+ +++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3445699999999999999999999999999999999998654 48999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999866543
No 86
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=127.95 Aligned_cols=85 Identities=22% Similarity=0.440 Sum_probs=79.0
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCC-CCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~-~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
....++|||+|||+++++++|+++|++|| |.+|.|+.++.+ +.+++||||+|.+.++|++|| .||+..|.|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34569999999999999999999999999 999999999887 778999999999999999999 899999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 87
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=129.68 Aligned_cols=87 Identities=30% Similarity=0.463 Sum_probs=79.8
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.+ +..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3446799999999999999999999999999999999988 56669999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
+++++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 999877544
No 88
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=129.78 Aligned_cols=86 Identities=27% Similarity=0.426 Sum_probs=78.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCC---CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP---GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
..++|||+|||+++++++|+++|++||.|.+|.|+.++. +..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999998876 44678999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
+++++....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 89
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=130.89 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=80.7
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccCCC
Q 019327 218 LAKPQA 223 (342)
Q Consensus 218 ~a~~~~ 223 (342)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998765
No 90
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=1.5e-19 Score=131.36 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=72.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
.+|||+|||+++++++|+++|++|| .|.+++|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999888889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 019327 221 PQADQ 225 (342)
Q Consensus 221 ~~~~~ 225 (342)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76643
No 91
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=126.40 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=76.5
Q ss_pred cCceEEEEecCCCCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
...++|||+|||+++++++|+ ++|++||.|.+|.|+.++.+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345899999999999999999 99999999999999999876 78999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 019327 216 CSLAKPQAD 224 (342)
Q Consensus 216 v~~a~~~~~ 224 (342)
|+++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.4e-18 Score=128.77 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=79.8
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC---cEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG---QVLD 215 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g---~~i~ 215 (342)
....++|||+|||.++++++|+++|++||.|.+|.|+.++ ++.+++||||+|.+.++|++|++.||+..+.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999988 46669999999999999999999999999998 9999
Q ss_pred EEeccCCCCCC
Q 019327 216 CSLAKPQADQK 226 (342)
Q Consensus 216 v~~a~~~~~~~ 226 (342)
|.+++++..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999877554
No 93
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=132.70 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=76.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCC-CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCC--CCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDN 122 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~-~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~--~~~~~~ 122 (342)
..-++|||+|||+++|+++|+++|++||. .|.+|++++| ..+++++|||||+|.+.++|++|++.|++.. +.++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d-~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD-KQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC-SSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec-CCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 44579999999999999999999999995 2678999999 6789999999999999999999999999863 468999
Q ss_pred CCeeecCCC
Q 019327 123 APTVSWADP 131 (342)
Q Consensus 123 ~i~v~~~~~ 131 (342)
.|.|+|+..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=127.02 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=72.4
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCce--eCCcEEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDC 216 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~--~~g~~i~v 216 (342)
..++++|||+|||.++|+++|+++|++||.|++|.+++. |++|||+|++.++|.+|++.|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345689999999999999999999999999999999875 7999999999999999999998764 78999999
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
.|+++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=127.88 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=79.4
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++|| |.+|.|+.++.+..+++||||+|++.++|++|+ .||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344569999999999999999999999996 999999999988888999999999999999999 899999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876644
No 96
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=130.08 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=81.5
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEE--------EEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~ 209 (342)
.....++|||+|||.++++++|+++|++||.|. .|.|+.++.+..+++||||+|.+.++|++|++.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344569999999999999999999999999999 699999988888899999999999999999999999999
Q ss_pred CCcEEEEEeccCCCCC
Q 019327 210 DGQVLDCSLAKPQADQ 225 (342)
Q Consensus 210 ~g~~i~v~~a~~~~~~ 225 (342)
.|+.|+|++++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987654
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=130.06 Aligned_cols=86 Identities=21% Similarity=0.306 Sum_probs=79.6
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhc-CCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCce-eCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAH-HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~ 217 (342)
...++|||+|||+++++++|+++|++ ||.|.+|.|+.++ ++.+++||||+|.+.++|++|++.||+.. |.|+.|+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 44689999999999999999999999 9999999999998 67779999999999999999999999999 999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
++.++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 98
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=125.82 Aligned_cols=83 Identities=25% Similarity=0.432 Sum_probs=77.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCC-CCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE-RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
..++|||+|||.++++++|+++|++||.|.++.|+.+..+.. ++++|||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 358999999999999999999999999999999999876554 6999999999999999999999999999999999999
Q ss_pred cCCC
Q 019327 220 KPQA 223 (342)
Q Consensus 220 ~~~~ 223 (342)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 99
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=2.4e-18 Score=133.22 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=81.7
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33456899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99877654
No 100
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=5.7e-19 Score=134.47 Aligned_cols=105 Identities=20% Similarity=0.307 Sum_probs=92.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||. |.+|.++.+ +.++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 77 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGP-IRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHLSGF--NVSNRYL 77 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHHTTC--BSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHcCCC--EECCeEE
Confidence 456789999999999999999999999999 999999876 345899999999999999999999986 7899999
Q ss_pred eeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCc
Q 019327 125 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 168 (342)
Q Consensus 125 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 168 (342)
.|.++.+.... .+++...++++|.++|++||.
T Consensus 78 ~v~~a~~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 99999865432 567778889999999999984
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=129.69 Aligned_cols=87 Identities=25% Similarity=0.442 Sum_probs=81.0
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.+..+++||||+|++.++|++|++. ++..|.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345569999999999999999999999999999999999988888899999999999999999998 9999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99987654
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.9e-18 Score=131.12 Aligned_cols=83 Identities=23% Similarity=0.381 Sum_probs=77.8
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++.++.+++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44557999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ecc
Q 019327 218 LAK 220 (342)
Q Consensus 218 ~a~ 220 (342)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=1.7e-18 Score=134.31 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=80.2
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|++|.|+.++.++.+++||||+|++.++|++|++.||+..|.|+.|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98765
No 104
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=4.1e-19 Score=131.64 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=78.3
Q ss_pred ceEEEEecCCC------CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC-cEE
Q 019327 142 VKALYVKNLPK------DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVL 214 (342)
Q Consensus 142 ~~~l~v~~l~~------~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-~~i 214 (342)
.++|||+|||. ++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|++.||+..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58999999999 99999999999999999999999999988889999999999999999999999999999 999
Q ss_pred EEEeccCCC
Q 019327 215 DCSLAKPQA 223 (342)
Q Consensus 215 ~v~~a~~~~ 223 (342)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=127.57 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=72.7
Q ss_pred cCceEEEEecCCC-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC--ceeCCcEEEE
Q 019327 140 SQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDC 216 (342)
Q Consensus 140 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v 216 (342)
.++++|||+|||+ ++++++|+++|++||.|.+|.|+++ ++||||+|++.++|++|++.||+ ..|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999999 9999999999999999999999987 68999999999999999999885 4699999999
Q ss_pred EeccCCCCC
Q 019327 217 SLAKPQADQ 225 (342)
Q Consensus 217 ~~a~~~~~~ 225 (342)
.+|+.+...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999875543
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=128.17 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=78.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|++|.|+.++. ..+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34468999999999999999999999999999999999875 56699999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019327 219 AKPQADQ 225 (342)
Q Consensus 219 a~~~~~~ 225 (342)
++.....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 107
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=124.66 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=79.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|+++++ ..++++++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGK-IDNIVLMKD-SDTGRSKGYGFITFSDSECARRALEQLNGF--ELAGRPMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEECC-SSSCCCCSEEEEEESCHHHHHHHHHHHTTC--CSSSSCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-EeEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHhCCC--eeCCcEEE
Confidence 46789999999999999999999999999 999999998 578999999999999999999999999985 78999999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|+++.++...
T Consensus 79 V~~a~~~~~~ 88 (95)
T 2dnz_A 79 VGHVTERLDG 88 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEcccccCC
Confidence 9999877543
No 108
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-18 Score=124.11 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=74.1
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc--CCceeCCcEEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQVLDC 216 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l--~~~~~~g~~i~v 216 (342)
..++++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|++.++|++|++.| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999999876 799999999999999999977 467899999999
Q ss_pred EeccCCCCCC
Q 019327 217 SLAKPQADQK 226 (342)
Q Consensus 217 ~~a~~~~~~~ 226 (342)
.|++++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9999776543
No 109
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=1.2e-18 Score=126.64 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhC--CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIG--PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G--~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
.+|||+|||+++|+++|+++|++|| + |.+|+++.+ ..+++++|||||+|.+.++|++|++.|++. .++++.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~-v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~--~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVND-ILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCC-CCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHGGGS--CSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCc-eEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHcCCC--eeCCEEEEE
Confidence 5799999999999999999999999 8 999999999 678999999999999999999999999986 789999999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
.++.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99987654
No 110
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-18 Score=125.77 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=72.6
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC--ceeCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~ 217 (342)
.++++|||+|||+++++++|+++|++||.|.+|.|+++ |+||||+|++.++|++|++.|++ ..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 44689999999999999999999999999999999875 79999999999999999998865 45999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
|++++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99877654
No 111
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=5.4e-18 Score=127.60 Aligned_cols=87 Identities=23% Similarity=0.424 Sum_probs=77.4
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++.++ ..|+|+.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 34456999999999999999999999999999999999999888889999999999999999999865 89999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987643
No 112
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=127.04 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=78.0
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEE--------EEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITK--------VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 209 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~ 209 (342)
......+|||+|||.++++++|+++|++||.|.+ ++|+.++.++.++|||||+|.+.++|++|++.||+..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4445699999999999999999999999999999 99999988888899999999999999999999999999
Q ss_pred CCcEEEEEecc
Q 019327 210 DGQVLDCSLAK 220 (342)
Q Consensus 210 ~g~~i~v~~a~ 220 (342)
.|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999984
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.8e-18 Score=120.83 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=69.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
+..|||+||++.+|+++|+++|.+||+|.++++... ||||||+|.+.++|++|++.||+..+.|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578999999999999999999999999999999763 8999999999999999999999999999999999995
No 114
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=4.1e-18 Score=123.44 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=77.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||.++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|+ .||+..+.|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999888888999999999999999999 899999999999999998
Q ss_pred CCC
Q 019327 221 PQA 223 (342)
Q Consensus 221 ~~~ 223 (342)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 115
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=124.08 Aligned_cols=83 Identities=20% Similarity=0.445 Sum_probs=75.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||.++++++|+++|++||+ |.+|.++.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGR-ISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCC-EeEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCeEEE
Confidence 45679999999999999999999999999 999999998 578999999999999999999999999985 78999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
|+|+.++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9998765
No 116
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=125.75 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=75.9
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|++|.|..+. .+++||||+|++.++|++|++.||+..|.++.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999997653 358999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
+++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987654
No 117
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=127.24 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=79.1
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEE-EEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcE----E
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV----L 214 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~----i 214 (342)
...++|||+|||.++++++|+++|++||.|. +|+|+.++.++.+++||||+|.+.++|++|++.||+..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4569999999999999999999999999999 9999999988888999999999999999999999999999999 9
Q ss_pred EEEeccCCC
Q 019327 215 DCSLAKPQA 223 (342)
Q Consensus 215 ~v~~a~~~~ 223 (342)
+|+|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998654
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=131.94 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=79.6
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|+ .||+..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44689999999999999999999999999999999999988888999999999999999999 89999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
+++...
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 119
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=129.98 Aligned_cols=87 Identities=22% Similarity=0.431 Sum_probs=80.7
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.+++||||+|.+.++|++||+. ++..|.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 344569999999999999999999999999999999999988888899999999999999999998 9999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99987653
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=127.84 Aligned_cols=86 Identities=24% Similarity=0.389 Sum_probs=78.0
Q ss_pred ccCceEEEEecCCCCCCHHHHH---HHHhcCCcEEEEEecCCCCCC---CCCceEEEEeCCHHHHHHHHHhcCCceeCCc
Q 019327 139 ASQVKALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 212 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~---~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~ 212 (342)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.++.+. .+++||||+|++.++|++|++.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3446899999999999999999 999999999999999887643 3469999999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 019327 213 VLDCSLAKPQAD 224 (342)
Q Consensus 213 ~i~v~~a~~~~~ 224 (342)
.|+|++|.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998763
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=125.31 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=73.8
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC-----cEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVL 214 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-----~~i 214 (342)
....+|||+|||+++++++|+++|++||.|++|.|+.+ +||||+|++.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34689999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEeccCCCCC
Q 019327 215 DCSLAKPQADQ 225 (342)
Q Consensus 215 ~v~~a~~~~~~ 225 (342)
+|+++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999986643
No 122
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=125.12 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=76.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.+|.|+.++. +.+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34569999999999999999999999999999999999887 56699999999999999999999999999999999999
Q ss_pred ccC
Q 019327 219 AKP 221 (342)
Q Consensus 219 a~~ 221 (342)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 123
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=2.5e-17 Score=127.07 Aligned_cols=87 Identities=28% Similarity=0.410 Sum_probs=80.2
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|++|.|+.++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44557999999999999999999999999999999999998 66679999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
+|.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876543
No 124
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=125.78 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=79.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|+|+++ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQ-ISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAMNGK--SVDGRQI 84 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSC-CCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHHTTC--CTTSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCeEE
Confidence 446789999999999999999999999999 999999998 578889999999999999999999999986 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++.+...
T Consensus 85 ~v~~a~~~~~ 94 (102)
T 1x5s_A 85 RVDQAGKSSD 94 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 125
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=125.74 Aligned_cols=87 Identities=18% Similarity=0.308 Sum_probs=79.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|.|+.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGP-LSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ--VFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSC-EEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHTTTE--ESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHhCCC--EECCcEE
Confidence 346789999999999999999999999999 999999998 568999999999999999999999999985 7889999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.+....
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999887653
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=127.40 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=74.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++. +.++|||||+|++.++|++|+. +++..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 458999999999999999999999999999999999988 6679999999999999999999 89999999999999987
Q ss_pred C
Q 019327 221 P 221 (342)
Q Consensus 221 ~ 221 (342)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=127.48 Aligned_cols=94 Identities=18% Similarity=0.354 Sum_probs=81.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
++|||+|||+++|+++|+++|++||+ |.+|.++.+ +++||||+|.+.++|++|++.|++. .++++.|.|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP-LRTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC-CSEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEE
Confidence 47999999999999999999999999 999999876 6899999999999999999999986 78999999999
Q ss_pred CCCCCccc------ccccCceEEEEecCC
Q 019327 129 ADPRNAES------SAASQVKALYVKNLP 151 (342)
Q Consensus 129 ~~~~~~~~------~~~~~~~~l~v~~l~ 151 (342)
+.+..... .......+|||+||+
T Consensus 72 a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 72 STGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred ccCCCCcccCCCCCccccCCCceecCCCC
Confidence 98765432 112236789999987
No 128
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=133.52 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=80.4
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEE--EEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCc----eeCC
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITK--VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY----EIDG 211 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~----~~~g 211 (342)
.....++|||+|||+++++++|+++|++||.|.. |+|+.|+.++.++|||||+|.+. +|++|++.||+. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455789999999999999999999999999976 99999998888899999999999 999999999999 9999
Q ss_pred cEEEEEeccCCCCC
Q 019327 212 QVLDCSLAKPQADQ 225 (342)
Q Consensus 212 ~~i~v~~a~~~~~~ 225 (342)
+.|+|++++++...
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999886543
No 129
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=125.81 Aligned_cols=85 Identities=18% Similarity=0.313 Sum_probs=78.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCc-EEEEEec-CCCCCCCCCceEEEEeCCHHHHHHHHHhcC--CceeCCcEEEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIP-PAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDC 216 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~v~i~-~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v 216 (342)
..++|||+|||+++++++|+++|++||. |.+|.|+ .++.++.+++||||+|.+.++|++|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4589999999999999999999999998 9999999 788877889999999999999999999996 58999999999
Q ss_pred EeccCCCCC
Q 019327 217 SLAKPQADQ 225 (342)
Q Consensus 217 ~~a~~~~~~ 225 (342)
+|++++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987653
No 130
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.5e-17 Score=123.98 Aligned_cols=80 Identities=31% Similarity=0.652 Sum_probs=73.8
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|.+|.|+ ++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019327 219 AKPQADQK 226 (342)
Q Consensus 219 a~~~~~~~ 226 (342)
++++....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 99877544
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=2.4e-18 Score=132.87 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=78.8
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|+ .||+..|.|+.|+|++
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 345689999999999999999999999999999999999888888999999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
+++...
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 986543
No 132
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=125.73 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=74.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..++++|||+|||.++|+++|+++|++||+ |++|.++++ ||||||+|++.++|.+|++.|++..+.+.++.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~-V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGP-ISYVVVMPK-------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 346789999999999999999999999999 999999865 789999999999999999999987677899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|+++.++.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998763
No 133
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=128.91 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=73.9
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC--CceeCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 217 (342)
.++++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|++.++|++|++.|+ +..|.|+.|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34689999999999999999999999999999999986 7999999999999999999887 468999999999
Q ss_pred eccCCCCCC
Q 019327 218 LAKPQADQK 226 (342)
Q Consensus 218 ~a~~~~~~~ 226 (342)
+++++....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998876543
No 134
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=136.68 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=77.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
..++|||+|||+++++++|+++|++|| .|.+|+|+.|+.++.++|||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 358999999999999999999999999 999999999999888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=126.92 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=78.2
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|.++.++.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 136
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.8e-18 Score=123.98 Aligned_cols=86 Identities=24% Similarity=0.541 Sum_probs=78.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.|+++ ..++++++||||+|.+.++|++|++ +++. .++++.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~-~~~~--~~~g~~l 81 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVN-MHFH--DIMGKKV 81 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSC-EEEEEECCC-TTTCSCCSEEEEEESSHHHHHHHHH-HCCC--BSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCCCCceEEEEECCHHHHHHHHH-hCCC--EECCeEE
Confidence 345789999999999999999999999999 999999998 5788999999999999999999998 8875 8899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.++...
T Consensus 82 ~V~~a~~~~~~ 92 (99)
T 2dgs_A 82 EVKRAEPRDSK 92 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99999887543
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=124.46 Aligned_cols=85 Identities=18% Similarity=0.377 Sum_probs=78.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeE-EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~-~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
..+.++|||+|||+++++++|+++|++||+ |. +|+++++ ..++.+++||||+|.+.++|++|++.|++. .++++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGE-TVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKINGK--PLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTC-CCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTTTTS--EESSCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCC-cceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHHcCC--ccCCCC
Confidence 346789999999999999999999999999 99 9999999 678999999999999999999999999985 788998
Q ss_pred ----CeeecCCCCC
Q 019327 124 ----PTVSWADPRN 133 (342)
Q Consensus 124 ----i~v~~~~~~~ 133 (342)
|+|.|+.+..
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999998764
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=7.8e-18 Score=126.40 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=76.2
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|++|.|+.++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456999999999999999999999999999999999998 666799999999999999999999999999999999999
Q ss_pred cc
Q 019327 219 AK 220 (342)
Q Consensus 219 a~ 220 (342)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 139
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=5.8e-18 Score=123.45 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=76.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.++.|+.+ +..+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345699999999999999999999999999999999874 456689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987664
No 140
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.9e-18 Score=125.91 Aligned_cols=86 Identities=22% Similarity=0.400 Sum_probs=79.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|.++.+ ..++.++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 87 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGP-VVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIMDMI--KLYGKPI 87 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSC-EEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHSSSC--BCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCcCCcEEEEEECCHHHHHHHHHHhCCC--eECCeEE
Confidence 346789999999999999999999999999 999999998 568899999999999999999999999985 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++.+...
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999988754
No 141
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=6.1e-18 Score=124.34 Aligned_cols=85 Identities=16% Similarity=0.460 Sum_probs=78.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||.++++++|+++|++||. |.+|+++.+ ..++.++|||||+|.+.++|++|++.|++. .++++.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGP-VINLKMMFD-PQTGRSKGYAFIEFRDLESSASAVRNLNGY--QLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCBC-TTTCCBCSEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEE
Confidence 4689999999999999999999999999 999999998 578899999999999999999999999985 789999999
Q ss_pred ecCCCCCcc
Q 019327 127 SWADPRNAE 135 (342)
Q Consensus 127 ~~~~~~~~~ 135 (342)
.++.+....
T Consensus 77 ~~a~~~~~~ 85 (96)
T 2x1f_A 77 GYSSNSDIS 85 (96)
T ss_dssp EECSCSSGG
T ss_pred EEcCCCCCC
Confidence 999887643
No 142
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=123.76 Aligned_cols=86 Identities=29% Similarity=0.490 Sum_probs=78.7
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.++.+++||||+|.+.++|++|++. +..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 344568999999999999999999999999999999999988888899999999999999999994 679999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99987654
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=9.8e-18 Score=120.89 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=74.5
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|++. ++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988888899999999999999999975 78899999999998
Q ss_pred c
Q 019327 219 A 219 (342)
Q Consensus 219 a 219 (342)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 144
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=126.55 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=75.1
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCC-CCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK-PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
.....++|||+|||.++++++|+++|++|| |.+|.|+.++ .++.+++||||+|.+.++|++|+ .||+..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344569999999999999999999999999 9999999998 57778999999999999999999 89999999999999
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 145
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=120.31 Aligned_cols=79 Identities=28% Similarity=0.605 Sum_probs=73.4
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|.+|.|+ ++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019327 219 AKPQADQ 225 (342)
Q Consensus 219 a~~~~~~ 225 (342)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9877653
No 146
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=124.82 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=78.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCC--CCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN--ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~--~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.|+.++.. ++.+++||||+|.+.++|++|++.|++. .++++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGA-IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH--TVDGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC--EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC--eeCCeE
Confidence 46789999999999999999999999999 999999988332 4489999999999999999999999986 788999
Q ss_pred CeeecCCCCCcc
Q 019327 124 PTVSWADPRNAE 135 (342)
Q Consensus 124 i~v~~~~~~~~~ 135 (342)
|.|+++.+....
T Consensus 80 l~V~~a~~~~~~ 91 (98)
T 2cpf_A 80 LEVRISERATKP 91 (98)
T ss_dssp CEEECSSCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999877543
No 147
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-18 Score=124.84 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=74.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.|+++ |+||||+|.+.++|++|++.|++..+.+.++.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~-V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGT-ICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 346789999999999999999999999999 999998765 789999999999999999999876667999999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++..+..
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999987654
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3.3e-18 Score=119.77 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=71.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 144 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
+|||+|||+++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|++ +|+..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998888889999999999999999998 8999999999999886
No 149
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=125.38 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=77.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.++.+ ..++.++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGE-IKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTSSEEEEEEEEESCHHHHHHHHHHHTTC--BSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCC-eEEEEEEec-CCCCceeeEEEEEECCHHHHHHHHHHhcCC--EECCcEEE
Confidence 45678999999999999999999999999 999999999 678999999999999999999999999985 78899999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|.++.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99987654
No 150
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=4.7e-18 Score=121.99 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=76.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.++++ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD-ITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSC-EEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCC-EEEEEEEEC-CCCCccccEEEEEECCHHHHHHHHHHhCCC--EECCcEE
Confidence 456789999999999999999999999999 999999998 578889999999999999999999999986 7899999
Q ss_pred eeecCC
Q 019327 125 TVSWAD 130 (342)
Q Consensus 125 ~v~~~~ 130 (342)
.|+++.
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999874
No 151
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=125.88 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=78.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.|+.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 86 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGR-VGDVYIPRE-PHTKAPRGFAFVRFHDRRDAQDAEAAMDGA--ELDGRELR 86 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEECCBC-SSSCSBCSCEEEEESSSSHHHHHHHHHSSC--CBTTBCCE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEeC-CCCCCCCeEEEEEECCHHHHHHHHHHcCCC--EECCcEEE
Confidence 45689999999999999999999999999 999999998 577899999999999999999999999986 78999999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|.++.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999987654
No 152
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=119.73 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=73.0
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|.+|.|+ ++||||+|++.++|++|++.||+..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4456999999999999999999999999999999997 45999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019327 219 AKPQADQ 225 (342)
Q Consensus 219 a~~~~~~ 225 (342)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9877643
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.2e-18 Score=136.17 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=74.5
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEE
Q 019327 93 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 172 (342)
Q Consensus 93 g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v 172 (342)
++||.+|..++.+..++..+.. ...+...--..... .........++|||+|||+++|+++|+++|++|| |++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v 75 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS---MTGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRV 75 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEE
T ss_pred CcccccccCccccchhcccchh---ccCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEE
Confidence 5788888888877777665443 22222221111111 1112334568999999999999999999999999 7799
Q ss_pred EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 173 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 173 ~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
.|+.++. +.+++||||+|++.++|++|| .+|+..|.++.|+|.++.++..
T Consensus 76 ~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 76 HIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp ECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 9999987 667999999999999999999 7899999999999999886553
No 154
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=122.75 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=78.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC-CCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDDN 122 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~-~~~~ 122 (342)
..+.++|||+|||+++|+++|+++|++ ||+ |.+|.|+++ . ++.+++||||+|.+.++|++|++.|++. . ++++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~-v~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~~g~ 80 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPS-CRGGKVVLD-Q-TGVSKGYGFVKFTDELEQKRALTECQGA--VGLGSK 80 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTT-EEEEEEEEC-T-TCCEEEEEEEEESCHHHHHHHHHHTTTC--CSSSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCC-eEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHHHccCC--cccCCE
Confidence 345689999999999999999999999 999 999999999 4 8899999999999999999999999985 6 8999
Q ss_pred CCeeecCCCCCc
Q 019327 123 APTVSWADPRNA 134 (342)
Q Consensus 123 ~i~v~~~~~~~~ 134 (342)
.|.|.++.+...
T Consensus 81 ~l~v~~a~~~~~ 92 (104)
T 2dhg_A 81 PVRLSVAIPKAS 92 (104)
T ss_dssp CCCCCBCCCCCS
T ss_pred eEEEEEccCCCc
Confidence 999999987654
No 155
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=128.53 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=74.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |++|+|+++ +|||||+|++.++|++|++.+++....+.++.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~-V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSC-CCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 345689999999999999999999999999 999999886 799999999999999999998864467999999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.++...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 156
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=126.42 Aligned_cols=85 Identities=27% Similarity=0.428 Sum_probs=77.6
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||.++++++|+++|++||.|.+|.|+.++.. +++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC--CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999988643 5899999999999999999999999999999999
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
++++++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998753
No 157
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=122.65 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=73.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC--CcEEEEEe
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID--GQVLDCSL 218 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~ 218 (342)
..++|||+|||.++++++|+++|++||.|++|.+..+ ++||||+|.+.++|++|++.||+..|. ++.|+|++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4589999999999999999999999999999999876 789999999999999999999999999 99999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
++++..
T Consensus 90 a~~~~~ 95 (97)
T 1why_A 90 AKSGPS 95 (97)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 158
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=2.3e-17 Score=120.25 Aligned_cols=84 Identities=14% Similarity=0.289 Sum_probs=77.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|+++++ ++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGH-VLYADIKME---NGKSKGCGVVKFESPEVAERACRMMNGM--KLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSC-EEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHHTTC--CBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHhCCC--EECCcEE
Confidence 346789999999999999999999999999 999999985 7789999999999999999999999986 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.+...
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 9999987754
No 159
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=8.6e-18 Score=127.90 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=79.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|+|+++ ..++++++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 98 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGN-VVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSMNGF--QIGMKRLK 98 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSC-CSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEC-CCCCCcCccEEEEECCHHHHHHHHHHcCCC--EECCEEEE
Confidence 34589999999999999999999999999 999999999 568999999999999999999999999985 78999999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|+++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999877543
No 160
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1e-17 Score=119.59 Aligned_cols=81 Identities=20% Similarity=0.438 Sum_probs=75.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
.+|||+|||+++++++|+++|++||+ |.+|.++++ ..++.+++||||+|.+.++|++|++.|++. .++++.|.|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPS-YLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTT-EEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEEc-CCCCCccceEEEEECCHHHHHHHHHHhcCC--eeCCcEEEEEe
Confidence 47999999999999999999999999 999999998 578999999999999999999999999986 78999999999
Q ss_pred CCCCC
Q 019327 129 ADPRN 133 (342)
Q Consensus 129 ~~~~~ 133 (342)
+.++.
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 98763
No 161
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=5.3e-18 Score=137.57 Aligned_cols=116 Identities=19% Similarity=0.347 Sum_probs=76.9
Q ss_pred EEeCCHHHHHHHHHHhCCCccC--CeEEEEee--------------------------cccCCeEEEcCCCCCCCHHHHH
Q 019327 15 VTFRTKELASQAIEELNSCELK--GKKIKCSA--------------------------AQAKHRLFIGNVPRNWGEDDMR 66 (342)
Q Consensus 15 V~f~~~e~A~~a~~~~~g~~~~--g~~i~v~~--------------------------~~~~~~l~v~nl~~~~te~~l~ 66 (342)
.+|.+.++|..|+..+++.... ++.+...+ ..+.++|||+|||+++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999988876554 33332221 1233579999999999999999
Q ss_pred HHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 67 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 67 ~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
++|++||+ |..|.|+.+ ..++.++|||||+|.+.++|++|++.|++. .+.++.|.|.|+.+...
T Consensus 91 ~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGE-IKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEALNGA--EIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSC-EEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEESEECC-
T ss_pred HHhhcCCC-EEEEEEEec-CCCCcEeeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEecCCCC
Confidence 99999999 999999998 678999999999999999999999999985 78999999999987654
No 162
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-18 Score=127.53 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=73.8
Q ss_pred cccCCeEEEcCCCC-CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 45 ~~~~~~l~v~nl~~-~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
..+.++|||+|||+ ++|+++|+++|++||+ |.+|.|+++ ++||||+|++.++|++|++.|++....+.++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~-V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGV-ISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSC-EEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 44678999999999 9999999999999999 999999876 58999999999999999999987656799999
Q ss_pred CeeecCCCCC
Q 019327 124 PTVSWADPRN 133 (342)
Q Consensus 124 i~v~~~~~~~ 133 (342)
|.|.++....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998654
No 163
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=124.42 Aligned_cols=86 Identities=20% Similarity=0.430 Sum_probs=79.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE-EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI-ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v-~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.+.++|||+|||+++++++|+++|++||. |.+| +|+++ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAMNGQ--YLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSC-BSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEEEc-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCEEE
Confidence 45789999999999999999999999999 9999 99998 578999999999999999999999999986 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|+++.+....
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 99999877543
No 164
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.7e-17 Score=124.28 Aligned_cols=87 Identities=24% Similarity=0.429 Sum_probs=77.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCC-CCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF-KLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~-~~~~~~i 124 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|+|+.+ ..++.+++||||+|.+.++|++|++.|++..+ ...++.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGK-IYELTVLKD-RFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSC-CCEEECCCC-SSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45679999999999999999999999999 999999998 57899999999999999999999999998631 2278999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++.+...
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987754
No 165
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-18 Score=128.51 Aligned_cols=86 Identities=21% Similarity=0.501 Sum_probs=80.4
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||.++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34589999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 877653
No 166
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=1.4e-17 Score=126.68 Aligned_cols=86 Identities=21% Similarity=0.470 Sum_probs=79.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||. |.+|+|+++ ..++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGR-ISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHTTTC--EETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCEEEE
Confidence 45679999999999999999999999999 999999998 568999999999999999999999999985 78999999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|.|+.+....
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999877543
No 167
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=123.80 Aligned_cols=86 Identities=26% Similarity=0.461 Sum_probs=78.9
Q ss_pred eecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 43 ~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
....+.++|||+|||+++|+++|+++|++||+ |.+|.++.+ . ++++++||||+|.+.++|++|++.|++. .++++
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~ 86 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGT-VKDLRLVTN-R-AGKPKGLAYVEYENESQASQAVMKMDGM--TIKEN 86 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHHTTE--ESSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEEEC-C-CCCEEeEEEEEECCHHHHHHHHHHhCCC--EECCE
Confidence 34456789999999999999999999999999 999999999 3 8899999999999999999999999985 78999
Q ss_pred CCeeecCCCCC
Q 019327 123 APTVSWADPRN 133 (342)
Q Consensus 123 ~i~v~~~~~~~ 133 (342)
.|.|.++.+..
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.3e-17 Score=129.35 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=78.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|+|+++ ..+++++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~lng~--~i~g~~l 118 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGP-IADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERANGM--ELDGRRI 118 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSC-EEEEEEECC-SSSSCCCCEEEEEESCHHHHHHHHHHHTTC--CSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCEEE
Confidence 456789999999999999999999999999 999999998 578899999999999999999999999985 7899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|+|+.++.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998764
No 169
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=123.81 Aligned_cols=88 Identities=18% Similarity=0.413 Sum_probs=79.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh-CCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM-SNPKFKLDDNA 123 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~~~~ 123 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.|++++..++.+++||||+|.+.++|++|++.| ++. .+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGE-LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST--HLYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC--BSSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCC-eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC--eECCCE
Confidence 345689999999999999999999999999 9999999873358899999999999999999999999 775 788999
Q ss_pred CeeecCCCCCcc
Q 019327 124 PTVSWADPRNAE 135 (342)
Q Consensus 124 i~v~~~~~~~~~ 135 (342)
|.|.++.+....
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999887543
No 170
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=124.86 Aligned_cols=84 Identities=24% Similarity=0.467 Sum_probs=77.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||.++++++|+++|++||+ |.+|.++++ ..++.++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~ 99 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGR-IESIQLMMD-SETGRSKGYGFITFSDSECAKKALEQLNGF--ELAGRPMK 99 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSC-EEEEEEEEE-TTTTEEEEEEEEEESCHHHHHHHHHHHTTC--CSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCEEEE
Confidence 34579999999999999999999999999 999999998 578899999999999999999999999985 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|+++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 171
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.5e-17 Score=123.12 Aligned_cols=84 Identities=17% Similarity=0.361 Sum_probs=76.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCC---C
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD---N 122 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~---~ 122 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.|+.+ .++.+++||||+|.+.++|++|++.|++. .+.+ +
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGV-IDECTVLRG--PDGSSKGCAFVKFSSHTEAQAAIHALHGS--QTMPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEEEC--SSSCEEEEEEEEESSHHHHHHHHHHHSSC--CCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEC--CCCCcCcEEEEEeCCHHHHHHHHHHHcCC--ccCCCCCc
Confidence 35689999999999999999999999999 999999999 37899999999999999999999999986 5666 9
Q ss_pred CCeeecCCCCCc
Q 019327 123 APTVSWADPRNA 134 (342)
Q Consensus 123 ~i~v~~~~~~~~ 134 (342)
.|.|.++.+...
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999999988754
No 172
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.1e-17 Score=124.64 Aligned_cols=96 Identities=17% Similarity=0.328 Sum_probs=81.2
Q ss_pred CCCCCeeecCCCCCcccccccCceEEEEecCCCC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHH
Q 019327 120 DDNAPTVSWADPRNAESSAASQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 198 (342)
Q Consensus 120 ~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~ 198 (342)
.+..+.+..+.+.... ......++|||+|||++ +++++|+++|++||.|++|.| +++||||+|++.++|+
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 4566777666544332 23344589999999999 999999999999999999999 2899999999999999
Q ss_pred HHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 199 KALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 199 ~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
+|++.||+..|+|+.|+|++++++..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999986543
No 173
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=121.52 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=73.8
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.| +|+.+ .+..+++||||+|.+.++|++|++.||+..|.++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34457999999999999999999999999977 56666 455669999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
+++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987654
No 174
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=122.29 Aligned_cols=82 Identities=29% Similarity=0.466 Sum_probs=75.4
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|.++ ++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3445689999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99876643
No 175
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=125.72 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=79.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC----CCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP----KFKLD 120 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~----~~~~~ 120 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|.|+++ ..++.+++||||+|.+.++|++|++.++.. .+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGD-LKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345789999999999999999999999999 999999999 578899999999999999999999999821 25889
Q ss_pred CCCCeeecCCCCCcc
Q 019327 121 DNAPTVSWADPRNAE 135 (342)
Q Consensus 121 ~~~i~v~~~~~~~~~ 135 (342)
++.|.|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887543
No 176
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-18 Score=123.88 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=75.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||+++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 46899999999999999999999999999999999998888889999999999999999999999999999998887654
No 177
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.1e-18 Score=123.15 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=76.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.++++ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 87 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGP-IADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERANGM--ELDGRRI 87 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSC-EEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-eeEEEEEEc-CCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCEEE
Confidence 345689999999999999999999999999 999999998 577899999999999999999999999985 7899999
Q ss_pred eeecCCC
Q 019327 125 TVSWADP 131 (342)
Q Consensus 125 ~v~~~~~ 131 (342)
.|+++.+
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998864
No 178
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=121.06 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=75.8
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++| .|.+|.|+.+ .++.+++||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999999 566669999999999999999999 999999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 179
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=125.93 Aligned_cols=86 Identities=31% Similarity=0.485 Sum_probs=78.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.++.++|||+|||+++|+++|+++|++||. |++|.|+.+ . ++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l 78 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGP-ISEVLLIKD-R-TSKSRGFAFITFENPADAKNAAKDMNGK--SLHGKAI 78 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSC-CSEEEEECS-T-TTTCCCEEEEECSSHHHHHHHHHHCSSC--BCSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHHhCCC--EECCEEE
Confidence 356789999999999999999999999999 999999999 3 8999999999999999999999999986 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|+++.+....
T Consensus 79 ~V~~a~~~~~~ 89 (116)
T 2fy1_A 79 KVEQAKKPSFQ 89 (116)
T ss_dssp EEEECCCSSCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 180
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=125.91 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=78.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.|+++ ..++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 88 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGS-ISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGVSGF--GYDHLILN 88 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCC-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHTTTC--EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHcCCC--eeCCcEEE
Confidence 45689999999999999999999999999 999999998 578899999999999999999999999985 78999999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|.++.+...
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987754
No 181
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-17 Score=122.09 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=75.8
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEE-EEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....+|||+|||+++++++|+++|++||.|.+ |.|+.+ .++.++|||||+|++.++|++||+. |+..|.++.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44689999999999999999999999999997 889888 6667799999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
+.+++.
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876553
No 182
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2.5e-18 Score=124.87 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
++|||+|||.++++++|+++|++||.|.++.|+.++.++.+++||||+|.+.+ |++|++.||+..+.|+.|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999988888999999999999 99999999999999999999999876
Q ss_pred CCC
Q 019327 223 ADQ 225 (342)
Q Consensus 223 ~~~ 225 (342)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 183
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.3e-18 Score=125.56 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||+++++++|+++|++||.|..+.++.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999988888888888889999999999999999999999999999999999986
Q ss_pred C
Q 019327 221 P 221 (342)
Q Consensus 221 ~ 221 (342)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 184
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-18 Score=119.50 Aligned_cols=76 Identities=22% Similarity=0.457 Sum_probs=72.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
++|||+|||.++++++|+++|++||.|.++.|+.++.++.++++|||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998888889999999999999999999999 9999999999987
No 185
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=123.75 Aligned_cols=82 Identities=23% Similarity=0.491 Sum_probs=76.1
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
.....++|||+|||.++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3445689999999999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
|++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99987654
No 186
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=126.72 Aligned_cols=87 Identities=23% Similarity=0.388 Sum_probs=79.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |++|.|+.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD-ITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSC-CCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHHTTE--EETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCcEE
Confidence 456789999999999999999999999999 999999998 678899999999999999999999999985 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.+....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887543
No 187
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=122.27 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=75.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEE--------EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS--------IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~--------v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 116 (342)
..+.++|||+|||+++++++|+++|++||. |.+ |+++.+ ..+++++|||||+|.+.++|++|++.|++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~~~~~~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~- 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGI-IKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWFDGK- 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSC-BCEETTTTEESEEEEEC-TTTCSEEEEEEEEBSSHHHHHHHHHHHTTC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-EeeccccccccEEEEec-CCCCCeeeEEEEEECCHHHHHHHHHHhCCC-
Confidence 345689999999999999999999999999 999 999998 678999999999999999999999999986
Q ss_pred CCCCCCCCeeecCC
Q 019327 117 FKLDDNAPTVSWAD 130 (342)
Q Consensus 117 ~~~~~~~i~v~~~~ 130 (342)
.+.++.|.|+++.
T Consensus 87 -~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 -EFSGNPIKVSFAT 99 (99)
T ss_dssp -BSSSSBCEEEECC
T ss_pred -EeCCcEEEEEecC
Confidence 7889999999874
No 188
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-18 Score=124.56 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=74.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||. |.+|.++++ ++||||+|.+.++|++|++.++...+.+.++.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~-v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGK-VTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 346789999999999999999999999999 999998875 799999999999999999988755567999999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.|+.++...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999877543
No 189
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=123.06 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=72.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++|+++|+++|++||+ |.+|.|+++ .. +.++|||||+|.+.++|++|++ +++. .++++.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~-v~~v~i~~d-~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~--~~~gr~l~ 82 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQ-VLNIQMRRT-LH-KAFKGSIFVVFDSIESAKKFVE-TPGQ--KYKETDLL 82 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSC-EEEEEEECC-CT-TSCCCEEEEEESSHHHHHHHHT-SSCC--CCTTTTCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCC-EEEEEEEEC-CC-CCCccEEEEEECCHHHHHHHHH-cCCC--EECCEEEE
Confidence 34689999999999999999999999999 999999999 34 9999999999999999999999 7764 88999999
Q ss_pred eecCCC
Q 019327 126 VSWADP 131 (342)
Q Consensus 126 v~~~~~ 131 (342)
|.|+..
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 998654
No 190
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.8e-17 Score=119.09 Aligned_cols=79 Identities=33% Similarity=0.558 Sum_probs=72.8
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcC--CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
.....++|||+|||+++++++|+++|++| |.|.+|.+. ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456999999999999999999999999 999999875 67999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 019327 216 CSLAKPQAD 224 (342)
Q Consensus 216 v~~a~~~~~ 224 (342)
|++++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987664
No 191
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=3.4e-18 Score=126.62 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=76.2
Q ss_pred cCCeEEEcCCCC------CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 47 AKHRLFIGNVPR------NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 47 ~~~~l~v~nl~~------~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
.+++|||+|||. ++++++|+++|++||+ |.+|+|+++ ..+++++|||||+|.+.++|++|++.|++. .++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~-i~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~lng~--~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGK-VVNMEFPID-EATGKTKGFLFVECGSMNDAKKIIKSFHGK--RLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSC-EEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHHTTC--BSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCC-EeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHhCCc--ccC
Confidence 367999999999 9999999999999999 999999999 577999999999999999999999999996 788
Q ss_pred C-CCCeeecCCCC
Q 019327 121 D-NAPTVSWADPR 132 (342)
Q Consensus 121 ~-~~i~v~~~~~~ 132 (342)
+ +.|.|.++.+.
T Consensus 81 g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 81 LKHRLFLYTMKDV 93 (100)
T ss_dssp SSCBCEEEESHHH
T ss_pred CCeEEEEEECchh
Confidence 8 99999998754
No 192
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7e-18 Score=126.27 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=72.8
Q ss_pred cCceEEEEecCCCC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC--CceeCCcEEEE
Q 019327 140 SQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDC 216 (342)
Q Consensus 140 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v 216 (342)
..+++|||+|||++ +++++|+++|++||.|.+|.|++. |+||||+|++.++|++|++.|+ +..|.|+.|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34689999999998 999999999999999999999865 8999999999999999999886 45699999999
Q ss_pred EeccCCCCCC
Q 019327 217 SLAKPQADQK 226 (342)
Q Consensus 217 ~~a~~~~~~~ 226 (342)
.+++.+....
T Consensus 97 ~~a~~~~~~~ 106 (112)
T 1x4f_A 97 DLSEKYKKLV 106 (112)
T ss_dssp EEECSCSSSS
T ss_pred EECccccccc
Confidence 9998776543
No 193
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=123.49 Aligned_cols=92 Identities=29% Similarity=0.577 Sum_probs=79.9
Q ss_pred eecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEe-eCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019327 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV-KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121 (342)
Q Consensus 43 ~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~-~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 121 (342)
..+.+.++|||+|||+++|+++|+++|++||+.|.+|.++ .+ ..++.++|||||+|.+.++|++|++.|++..+.+++
T Consensus 3 ~~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 3 SGSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA-ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp SCCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS-CTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred ccccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC-CCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 3456678999999999999999999999999559999998 56 677899999999999999999999999622258899
Q ss_pred CCCeeecCCCCCcc
Q 019327 122 NAPTVSWADPRNAE 135 (342)
Q Consensus 122 ~~i~v~~~~~~~~~ 135 (342)
+.|.|.|+.+....
T Consensus 82 ~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 HQIAVDWAEPEIDV 95 (109)
T ss_dssp BCCEEEESCSSCST
T ss_pred CeEEEEEcCCCCCc
Confidence 99999999887653
No 194
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=3.6e-18 Score=133.08 Aligned_cols=83 Identities=11% Similarity=0.169 Sum_probs=76.5
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCc---EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
.....+|||+|||+++|+++|+++|++||. |.+|+|+.++. +.++|||||+|++.++|++||+ ||+..|+++.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 344689999999999999999999999999 88999999988 6669999999999999999999 999999999999
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|.++.+++
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99987654
No 195
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=118.49 Aligned_cols=78 Identities=21% Similarity=0.434 Sum_probs=72.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|.+|.|+ ++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
++++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 196
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=128.38 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=77.4
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||.++++++|+++|++||.|+++.|+.++.++.+++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred Eec
Q 019327 217 SLA 219 (342)
Q Consensus 217 ~~a 219 (342)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 197
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=121.52 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=75.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|+|+++ . ++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 87 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGP-LTKVTICKD-R-EGKPKSFGFVCFKHPESVSYAIALLNGI--RLYGRPI 87 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-T-TSCEEEEEEEEESSTHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEEEC-C-CCCCceEEEEEECCHHHHHHHHHHhCCC--EECCCEE
Confidence 346689999999999999999999999999 999999998 3 4899999999999999999999999986 7889999
Q ss_pred eeecCCC
Q 019327 125 TVSWADP 131 (342)
Q Consensus 125 ~v~~~~~ 131 (342)
.|+++..
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9998763
No 198
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-18 Score=128.70 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=77.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcE-EEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
....++|||+|||+++++++|+++|++||.| ..|+|+.++ ++.+++||||+|.+.++|++||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999998 666799999999999999999997 9999999999999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
++.++..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987663
No 199
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=122.20 Aligned_cols=84 Identities=17% Similarity=0.338 Sum_probs=77.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++|+++|+++|++||+ |.+|+|+.+ ++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 86 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGT-ITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGR--IVATKPLY 86 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSC-EEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCC--EeCCcEEE
Confidence 45789999999999999999999999999 999999987 7889999999999999999999999986 78999999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999887643
No 200
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=122.63 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=74.4
Q ss_pred cCceEEEEecCCCCC------CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCc-
Q 019327 140 SQVKALYVKNLPKDI------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ- 212 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~- 212 (342)
...++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.++.++|||||+|.+.++|++|++.||+..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999998 35566799999999999999999999999999998
Q ss_pred EEEEEeccCCC
Q 019327 213 VLDCSLAKPQA 223 (342)
Q Consensus 213 ~i~v~~a~~~~ 223 (342)
.|+|+++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999998654
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=2.5e-17 Score=123.67 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=70.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..+|||+|||+++++++|+++|++|| .|..+.|..+. ++|||||+|++.++|++||+.||+..|+|+.|+|++++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~----~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD----FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS----SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC----CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 48999999999999999999999999 89999997532 48999999999999999999999999999999999997
Q ss_pred CCC
Q 019327 221 PQA 223 (342)
Q Consensus 221 ~~~ 223 (342)
...
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 202
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-18 Score=121.27 Aligned_cols=81 Identities=15% Similarity=0.324 Sum_probs=75.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.++.+ ..++.++|||||+|.+.++|++|++.|++. .++++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGK-IVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTALKAS--GVQAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSC-EEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHHHHH--TCCEESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhcCC--eEeeEEEe
Confidence 46789999999999999999999999999 999999998 578999999999999999999999999985 78899998
Q ss_pred eecCC
Q 019327 126 VSWAD 130 (342)
Q Consensus 126 v~~~~ 130 (342)
+.++.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 88765
No 203
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=122.00 Aligned_cols=85 Identities=24% Similarity=0.460 Sum_probs=76.4
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
...+.++|||+|||+++++++|+++|++||+ |.+|+|+++ ...+++||||+|.+.++|++|++.|++. .+.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 84 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGP-CKSCKMITE---HTSNDPYCFVEFYEHRDAAAALAAMNGR--KILGKE 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSC-EEEEEEECC---CCSSCCEEEEEESSHHHHHHHHHHHTTE--EETTEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCC-EeEEEEEec---CCCCCCEEEEEECCHHHHHHHHHHhCCC--CcCCCe
Confidence 3456789999999999999999999999999 999999998 2336899999999999999999999985 788999
Q ss_pred CeeecCCCCCc
Q 019327 124 PTVSWADPRNA 134 (342)
Q Consensus 124 i~v~~~~~~~~ 134 (342)
|.|.|+.+...
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999988654
No 204
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=121.76 Aligned_cols=86 Identities=30% Similarity=0.451 Sum_probs=76.3
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||.++++++|+++|+.|. .|.++.++.+..+++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445579999999999999999999999873 6777778777778999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 019327 217 SLAKPQADQ 225 (342)
Q Consensus 217 ~~a~~~~~~ 225 (342)
++++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999987643
No 205
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=122.17 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=73.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 222 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 222 (342)
++|||+|||+++++++|+++|++||.|.+|.|+.+ +++||||+|.+.++|++|++.||+..+.|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 4899999999999999999999999999999999999987
Q ss_pred CCC
Q 019327 223 ADQ 225 (342)
Q Consensus 223 ~~~ 225 (342)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 206
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=117.39 Aligned_cols=77 Identities=25% Similarity=0.473 Sum_probs=71.7
Q ss_pred cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc-CCceeCCcEEEE
Q 019327 138 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLDC 216 (342)
Q Consensus 138 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v 216 (342)
.....++|||+|||.++++++|+++|++||.|.++.++++ ++||||+|.+.++|++|++.| ++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3445689999999999999999999999999999999975 799999999999999999999 999999999999
Q ss_pred Eecc
Q 019327 217 SLAK 220 (342)
Q Consensus 217 ~~a~ 220 (342)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 207
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.7e-17 Score=116.10 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=69.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
+|||+|||+++++++|+++|++||+ |.+|.++.+ ..+++++|||||+|.+.++|++|++ +++. .++++.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~-~~~~--~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGK-VDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-IHFH--EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSC-CSEECCCBC-SSSTTSCBEEEEECSCHHHHHHHHS-SSCC--CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHH-CCCC--EECCEEEEEEeC
Confidence 5999999999999999999999999 999999998 5688999999999999999999998 7774 789999999875
No 208
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=122.75 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=75.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|+++.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGK-VVKVTIMKD-KDTRKSKGVAFILFLDKDSAQNCTRAINNK--QLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSC-EEEEEECCC-SSSCCCTTCEEEEESCHHHHHHHHHHTTTE--EETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHcCCC--eeCCcEE
Confidence 345689999999999999999999999999 999999998 567899999999999999999999999985 7889999
Q ss_pred eeecCC
Q 019327 125 TVSWAD 130 (342)
Q Consensus 125 ~v~~~~ 130 (342)
.|+++.
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 209
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=132.39 Aligned_cols=83 Identities=13% Similarity=0.268 Sum_probs=76.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhC--CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIG--PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G--~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..++|||+|||+++|+++|+++|++|| + |.+|+|+.| ..+++++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~lng~--~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYD-VVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELLPGK--VLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCC-EEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHSTTC--EETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCcc-EEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCeEe
Confidence 467999999999999999999999999 8 999999999 688999999999999999999999999985 8899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|.++.++.
T Consensus 130 ~V~~a~~~~ 138 (156)
T 3n9u_C 130 DVRPATRQN 138 (156)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCCCc
Confidence 999997653
No 210
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.5e-18 Score=126.11 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=73.9
Q ss_pred cccCCeEEEcCCCCC-CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~-~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
..+.++|||+|||++ +++++|+++|++||+ |.+|.|+++ ++||||+|.+.++|++|++.|++....+.++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~-V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK-IKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC-CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC-EEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 456789999999998 999999999999999 999999764 78999999999999999999986656799999
Q ss_pred CeeecCCCCCc
Q 019327 124 PTVSWADPRNA 134 (342)
Q Consensus 124 i~v~~~~~~~~ 134 (342)
|.|.++.....
T Consensus 94 l~V~~a~~~~~ 104 (112)
T 1x4f_A 94 VKVDLSEKYKK 104 (112)
T ss_dssp CEEEEECSCSS
T ss_pred EEEEECccccc
Confidence 99999987643
No 211
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=123.55 Aligned_cols=84 Identities=24% Similarity=0.505 Sum_probs=78.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++++++|+++|++||+ |.+|.++.+ ..++.++|||||+|.+.++|++|++.|++. .+.++.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNLNGR--EFSGRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSC-CSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHSSSB--SCSSSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCC-eeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEE
Confidence 4689999999999999999999999999 999999998 578899999999999999999999999985 789999999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99987754
No 212
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=1.3e-17 Score=125.77 Aligned_cols=85 Identities=19% Similarity=0.383 Sum_probs=78.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|.++.+ ..++.++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGE-IKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEALNGA--EIMGQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSC-EEEEECCBC-TTTSSBCSEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCcEE
Confidence 345679999999999999999999999999 999999998 578999999999999999999999999985 7899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|.++.++.
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999987664
No 213
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=122.84 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=73.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++|+++|+++|++||. ++|+|+.++ ++.+++||||+|++.++|++||+ +|+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 344689999999999999999999999995 499999998 66779999999999999999995 799999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 214
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=123.92 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=76.4
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee--------C
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--------D 210 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~--------~ 210 (342)
....++|||+|||.++++++|+++|++||.|.+|.|+.++ +..+++||||+|.+.++|++|++.||+..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 667799999999999999999999999999 5
Q ss_pred CcEEEEEeccCC
Q 019327 211 GQVLDCSLAKPQ 222 (342)
Q Consensus 211 g~~i~v~~a~~~ 222 (342)
+++|.|+|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999864
No 215
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=125.47 Aligned_cols=85 Identities=19% Similarity=0.363 Sum_probs=77.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|+|+++ ..++++++||||+|.+.++|++|++.+++ .++++.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~~g~~l 88 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGD-IEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDPNP---IIDGRKA 88 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSC-EEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCSSC---EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC-eeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhCCC---cCCCEEE
Confidence 345789999999999999999999999999 999999998 67899999999999999999999999986 6899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.+...
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999976543
No 216
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.2e-17 Score=122.56 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=71.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||.++++++|+++|++||.|.+++|.+. ++||||+|.+.++|++|++.||+..|.|+.|+|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4689999999999999999999999999999999843 8999999999999999999999999999999999998
Q ss_pred CC
Q 019327 221 PQ 222 (342)
Q Consensus 221 ~~ 222 (342)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 217
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.7e-17 Score=121.19 Aligned_cols=85 Identities=22% Similarity=0.476 Sum_probs=76.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|+|+.++ ..+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 85 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGK-ILDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGT--VVEGRKI 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSC-EEEEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEecC---CCCcEEEEEEECCHHHHHHHHHHhCCC--EECCEEE
Confidence 345689999999999999999999999999 9999999982 238999999999999999999999986 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.+....
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999887653
No 218
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=123.56 Aligned_cols=86 Identities=23% Similarity=0.451 Sum_probs=78.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.|+++ ..++.+++||||+|.+.++|++|++. ++ +.++++.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~a~~~-~~--~~~~g~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGE-VVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVLAS-RP--HTLDGRNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-SSSCCEEEEEEEEESSTTHHHHHHHH-CS--EEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeeC-CCCCCcceEEEEEECCHHHHHHHHHh-CC--CeECCEEE
Confidence 456789999999999999999999999999 999999998 67899999999999999999999998 66 58899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.++...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999887643
No 219
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.5e-17 Score=118.48 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=75.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||+|||+++++++|+++|++||+ |.+|.++.+ ..++.+++||||+|.+.++|++|+ .+++. .++++.|.|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~-~~~g~--~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGS-VNRVTILCD-KFSGHPKGFAYIEFSDKESVRTSL-ALDES--LFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCC-EEEEEEEES-CSSSSCCEEEEEEESSTHHHHHHG-GGTTC--EETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHH-hcCCC--EECCcEEEE
Confidence 3579999999999999999999999999 999999998 578999999999999999999999 89986 789999999
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
.++.+.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998765
No 220
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=122.71 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=73.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
...+|||+|||+++++++|+++|++| .|.+|.|+.++. +.++|||||+|.+.++|++|| .+|+..|.++.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999 899999999987 566999999999999999999 589999999999999987
Q ss_pred CCC
Q 019327 221 PQA 223 (342)
Q Consensus 221 ~~~ 223 (342)
++.
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 221
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=128.53 Aligned_cols=86 Identities=19% Similarity=0.398 Sum_probs=78.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|+.||+ |++|+|+++ ..+++++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 115 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGP-IESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGLNGF--NILNKRLK 115 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSC-EEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHTTTE--ECSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 34579999999999999999999999999 999999999 568899999999999999999999999985 78999999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|+++.+....
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999877543
No 222
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.6e-17 Score=115.90 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=67.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
....|||+||++.+||++|+++|.+||+ |.++.++. ++|||||+|.++++|++|++.||+. .+.++.|+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~-V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~--~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGP-LVSFHPYL-------NQGIALCKYTTREEANKAQMALNNC--VLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSC-EEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTE--EETTEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCC-EEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCC--EECCcEEEE
Confidence 3568999999999999999999999999 99999965 4899999999999999999999985 889999999
Q ss_pred ecC
Q 019327 127 SWA 129 (342)
Q Consensus 127 ~~~ 129 (342)
+++
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 877
No 223
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=4.2e-17 Score=122.37 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=73.0
Q ss_pred ccccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 137 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
......++|||+|||.++++++|+++|++||.|.+|.|+ ++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445567999999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred EeccCCCC
Q 019327 217 SLAKPQAD 224 (342)
Q Consensus 217 ~~a~~~~~ 224 (342)
++++++..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987654
No 224
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-18 Score=125.77 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=76.7
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|.. .++.+..++.+++||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999888 677777777779999999999999999999 999999999999999
Q ss_pred ccCCCCC
Q 019327 219 AKPQADQ 225 (342)
Q Consensus 219 a~~~~~~ 225 (342)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876643
No 225
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=129.39 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=78.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEE--EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC--CCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS--IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD 121 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~--v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~--~~~~~~ 121 (342)
...++|||+|||+++|+++|+++|++||. |.. |+|++| ..+++++|||||+|.+. +|.+|++.|++. ++.+++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~-v~~~~v~i~~d-~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAV-LSSSNVRVIKD-KQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCC-CCTTTEECCBC-SSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCC-cceeeEEEEEc-CCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 45689999999999999999999999999 977 999999 67899999999999999 999999999985 447899
Q ss_pred CCCeeecCCCCCc
Q 019327 122 NAPTVSWADPRNA 134 (342)
Q Consensus 122 ~~i~v~~~~~~~~ 134 (342)
+.|.|+++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987643
No 226
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=4.1e-17 Score=122.41 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=75.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|+|+.+ . ++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 100 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGT-LKKAAVHYD-R-SGRSLGTADVHFERKADALKAMKQYNGV--PLDGRPM 100 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHhCCC--EeCCcEE
Confidence 456789999999999999999999999999 999999999 3 8999999999999999999999999986 7899999
Q ss_pred eeecCC
Q 019327 125 TVSWAD 130 (342)
Q Consensus 125 ~v~~~~ 130 (342)
.|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999875
No 227
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=3.8e-17 Score=126.41 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=78.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||. |.+|.|+.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGE-IKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCBC-TTTSSBCSCEEEEESSHHHHHHHHHHHTTC--BSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--eeCCeEE
Confidence 345679999999999999999999999999 999999998 568999999999999999999999999986 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.+...
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999977654
No 228
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=116.67 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
++|||+|||+++++++|+++|++||+ |.+|.++++ ..+++++|||||+|.+.++|++|++.++ . .++++.|.|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~~~-~--~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGE-VKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQSR-H--ELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSC-CCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHHTTT-C--CCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEecC-CCCCCcCceEEEEEcCHHHHHHHHHhCC-C--ccCCEEEEEEe
Confidence 47999999999999999999999999 999999998 5778999999999999999999999988 3 88999999988
Q ss_pred C
Q 019327 129 A 129 (342)
Q Consensus 129 ~ 129 (342)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 229
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.3e-17 Score=122.85 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=77.2
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
...+.++|||+|||+++++++|+++|++||+ |.+|+|+.+ .++++++||||+|.+.++|++|++.|++. .++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~--~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 85 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGV-VVRADILED--KDGKSRGIGTVTFEQSIEAVQAISMFNGQ--LLFDRP 85 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEEEC--TTCSEEEEEEEEESSHHHHHHHHHHHTTC--EETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEC--CCCCeeeEEEEEECCHHHHHHHHHHhCCC--EeCCCE
Confidence 3456789999999999999999999999999 999999998 35899999999999999999999999986 788999
Q ss_pred CeeecCCCCC
Q 019327 124 PTVSWADPRN 133 (342)
Q Consensus 124 i~v~~~~~~~ 133 (342)
|.|+++....
T Consensus 86 l~v~~a~~~~ 95 (114)
T 2do0_A 86 MHVKMDERAL 95 (114)
T ss_dssp CEEEECSCCC
T ss_pred EEEEEcccCC
Confidence 9999987543
No 230
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=121.74 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=72.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||.++++++|+++|++||.|.+|.|++. ++||||+|.+.++|++|++.||+..|.|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3589999999999999999999999999999999864 8999999999999999999999999999999999997
Q ss_pred CCC
Q 019327 221 PQA 223 (342)
Q Consensus 221 ~~~ 223 (342)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 644
No 231
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=124.80 Aligned_cols=83 Identities=18% Similarity=0.388 Sum_probs=73.7
Q ss_pred cCceEEEEecCCCCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
...++|||+|||+.+++++|+ ++|++||.|.+|.+.. +..++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346899999999999999876 6999999999998864 345699999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 019327 216 CSLAKPQADQ 225 (342)
Q Consensus 216 v~~a~~~~~~ 225 (342)
|.|++++...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999876543
No 232
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=125.27 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=79.6
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeE--------EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI--------SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~--------~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
...+.++|||+|||+++|+++|+++|++||. |. .|+|+.+ ..++++++||||+|.+.++|++|++.|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGV-VKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSC-BCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-EeEccccCccCEEEEEe-CCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3456789999999999999999999999999 88 6999998 678999999999999999999999999986
Q ss_pred CCCCCCCCCeeecCCCCCcc
Q 019327 116 KFKLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 116 ~~~~~~~~i~v~~~~~~~~~ 135 (342)
.+.++.|.|.++.+....
T Consensus 89 --~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 --DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp --EETTEECEEECSSCCCCS
T ss_pred --ccCCCEEEEEECCCCCCC
Confidence 788999999999887543
No 233
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=119.00 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=74.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCC-CceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ-NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~-~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
..++|||+|||+++|+++|+++|++||+ |.+|.++.++ .++. +++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGK-IKMIDMPVER-MHPHLSKGYAYVEFENPDEAEKALKHMDGG--QIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSC-EEEEECCEET-TEEEEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEeCC-CCCCCCCcEEEEEEecHHHHHHHHHHcCCC--eECCeEEE
Confidence 4679999999999999999999999999 9999999983 3333 8999999999999999999999986 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|+++.+..
T Consensus 79 v~~a~~~~ 86 (88)
T 4a8x_A 79 ATAVLAPW 86 (88)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99987653
No 234
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1.1e-16 Score=117.69 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=71.7
Q ss_pred ccccCceEEEEecCCC-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 137 SAASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 137 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
......++|||+|||+ ++++++|+++|++||.|.++.|. ++||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3444579999999998 99999999999999999999993 79999999999999999999999999999999
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|++++++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998653
No 235
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-17 Score=127.24 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=73.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcE----EEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKI----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i----~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 214 (342)
....++|||+|||.++++++|+++|++||.| ..+++. ++.+++||||+|.+.++|++|++.||+..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999998 455544 45568999999999999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 019327 215 DCSLAKPQADQK 226 (342)
Q Consensus 215 ~v~~a~~~~~~~ 226 (342)
+|++++++....
T Consensus 98 ~v~~a~~~~~~~ 109 (115)
T 2cpx_A 98 VIEFGKNKKQRS 109 (115)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876543
No 236
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.1e-17 Score=121.21 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=72.6
Q ss_pred cCceEEEE--ecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCcee-----CCc
Q 019327 140 SQVKALYV--KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-----DGQ 212 (342)
Q Consensus 140 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~-----~g~ 212 (342)
.++++||| +||++++++++|+++|++||.|.+|.|+.+ |+||||+|++.++|++|++.||+..| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34688999 669999999999999999999999998764 79999999999999999999999988 689
Q ss_pred EEEEEeccCCCCCC
Q 019327 213 VLDCSLAKPQADQK 226 (342)
Q Consensus 213 ~i~v~~a~~~~~~~ 226 (342)
+|.|.+++......
T Consensus 97 ~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 97 TLYLNFVEKVQWSG 110 (114)
T ss_dssp ECEEEEESCCCCSS
T ss_pred EEEEEecccCcccC
Confidence 99999998665443
No 237
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=3e-17 Score=118.30 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=71.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|+++.+ ..+++++|||||+|.+.++|++|++. ++. .++++.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~-~~~--~~~g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMD-PNTGRSRGFGFILFKDAASVEKVLDQ-KEH--RLDGRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSTHHHHHHHHS-SCE--EETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEeec-CCCCccccEEEEEECCHHHHHHHHHh-CCC--EECCEEEE
Confidence 45789999999999999999999999999 999999999 57899999999999999999999975 443 68999999
Q ss_pred eecC
Q 019327 126 VSWA 129 (342)
Q Consensus 126 v~~~ 129 (342)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8875
No 238
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=119.66 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=71.9
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||+++++++|+++|++||.|. +.++.+ .+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34468999999999999999999999999996 566543 3489999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
++++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987653
No 239
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.8e-17 Score=120.24 Aligned_cols=81 Identities=19% Similarity=0.459 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeec
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 128 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~ 128 (342)
++|||+|||+++++++|+++|++||+ |.+|.++++ ..++.++|||||+|.+.+ |++|++.|++. .++++.|.|++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGK-VFNVKLIYD-RETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTC-CSEEEECCC-SSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCC-EEEEEEEEc-CCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEEEEEE
Confidence 57999999999999999999999999 999999998 577999999999999999 99999999986 78999999999
Q ss_pred CCCCCc
Q 019327 129 ADPRNA 134 (342)
Q Consensus 129 ~~~~~~ 134 (342)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 987654
No 240
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=6.3e-17 Score=129.98 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=78.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++|+++|+++|++||+ |++|.|+.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGD-IKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYINGT--RLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHTTTS--EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 45689999999999999999999999999 999999999 678899999999999999999999999985 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|+|+.+..
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998754
No 241
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=2.9e-17 Score=123.56 Aligned_cols=87 Identities=21% Similarity=0.379 Sum_probs=75.3
Q ss_pred eecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 43 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 43 ~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
+...+.++|||+|||+++|+++|+++|++||+ |.+|.|+++ ..++.++|||||+|.+.++|++|++.++ ..++++
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~-~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~l~g~ 94 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGE-VKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSK 94 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSC-EEEEEECCC-TTTCCCTTCEEEEESSHHHHHHHHHSSC---EEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCC-eEEEEEEEC-CCCCCcCcEEEEEECCHHHHHHHHHHCC---CcCCCE
Confidence 34456789999999999999999999999999 999999998 5789999999999999999999999874 489999
Q ss_pred CCeeecCCCCCc
Q 019327 123 APTVSWADPRNA 134 (342)
Q Consensus 123 ~i~v~~~~~~~~ 134 (342)
.|.|.++.++..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987653
No 242
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-17 Score=126.99 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=76.3
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCc---EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
....++|||+|||+++|+++|+++|++||. |..|+|+.++. +.++|||||+|.+.++|++||+ +|+..|.++.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 344689999999999999999999999999 89999999887 6669999999999999999999 899999999999
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|.++.+++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997654
No 243
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.3e-17 Score=119.26 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=71.6
Q ss_pred ccCceEEEEecCCC-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 139 ASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 139 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
....++|||+|||+ ++++++|+++|++||.|.+|.|. ++||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34569999999998 99999999999999999999994 7899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 244
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.6e-17 Score=116.18 Aligned_cols=75 Identities=17% Similarity=0.420 Sum_probs=71.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 144 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 144 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
+|||+|||.++++++|+++|++||.|.++.++.++.++.+++||||+|.+.++|++|++. ++..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988888899999999999999999995 888999999999875
No 245
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=2.2e-17 Score=126.24 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=74.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++++++|+++|++||+ |.+|+|+++ ..++++++||||+|.+.++|++|++.|++. .++++.|+|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V 114 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGN-VISAKVFID-KQTSLSKCFGFVSFDNPDSAQVAIKAMNGF--QVGTKRLKV 114 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCE-EEEEEECCC-SSSSCCCCEEEEEEESSHHHHHHHHHCCCC--EETTEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEeC-CCCCCcCcEEEEEECCHHHHHHHHHHcCCC--EECCEEEEE
Confidence 4579999999999999999999999999 999999998 678899999999999999999999999985 789999999
Q ss_pred ecCC
Q 019327 127 SWAD 130 (342)
Q Consensus 127 ~~~~ 130 (342)
+++.
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8863
No 246
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=119.36 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=73.3
Q ss_pred cCCeEEEcCCCCCCCHHHHH----HHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMR----KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~----~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
..++|||+|||+++++++|+ ++|++||+ |.+|+|+.+ ..+ ++||||+|.+.++|++|++.|++. .++++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~-v~~v~i~~~-~~~---rg~afV~f~~~~~A~~Ai~~l~g~--~~~gr 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGK-VKSVELSPH-TDY---QLKAVVQMENLQDAIGAVNSLHRY--KIGSK 80 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC-EEEEEECSC-CST---TCCEEEEESSHHHHHHHHHHHTTE--EETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCc-EEEEEEEeC-CCC---CeEEEEEECCHHHHHHHHHHhCCC--EECCe
Confidence 45789999999999999999 99999999 999999988 233 889999999999999999999985 78999
Q ss_pred CCeeecCCCCCc
Q 019327 123 APTVSWADPRNA 134 (342)
Q Consensus 123 ~i~v~~~~~~~~ 134 (342)
.|+|+++.+...
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999987643
No 247
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-16 Score=114.87 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=71.5
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|| ++++++|+++|++||.|.+|.|... ++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 8999999999999999999999533 89999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019327 219 AKPQADQ 225 (342)
Q Consensus 219 a~~~~~~ 225 (342)
++++...
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 248
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=116.41 Aligned_cols=73 Identities=26% Similarity=0.500 Sum_probs=66.7
Q ss_pred eEEEEecCCCCC------CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCc-EEE
Q 019327 143 KALYVKNLPKDI------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLD 215 (342)
Q Consensus 143 ~~l~v~~l~~~~------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~ 215 (342)
++|||+|||..+ ++++|+++|++||.|.++.|+ +.++.+++||||+|.+.++|++|++.||+..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999988 34566799999999999999999999999999999 887
Q ss_pred EE
Q 019327 216 CS 217 (342)
Q Consensus 216 v~ 217 (342)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 249
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=121.11 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=74.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|+|..+ +.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 91 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGA-IRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGRDGY--DYDGYRL 91 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHcCCC--EECCeEE
Confidence 445689999999999999999999999999 999999654 458999999999999999999999985 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.+...
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9999987654
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.5e-17 Score=122.03 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=73.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++|+++|+++|++||. |.++.++.+ ..++++++||||+|.+.++|++|++.|++. .++++.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQV-IPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCB-CTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-ccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHhCCC--eECCcEEEE
Confidence 3579999999999999999999999999 988888888 578899999999999999999999999986 789999999
Q ss_pred ecCCC
Q 019327 127 SWADP 131 (342)
Q Consensus 127 ~~~~~ 131 (342)
+++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 251
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.7e-17 Score=119.50 Aligned_cols=84 Identities=15% Similarity=0.336 Sum_probs=76.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.|+.+ ..++.++|||||+|.+.++|++|++. . +.++++.|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~--~--~~~~g~~l~ 86 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGE-VLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMSQ--R--HMIDGRWCD 86 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSC-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHS--C--EEETTEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCC-eEEEEEEec-CCCCCccceEEEEECCHHHHHHHHHc--C--CeeCCeEEE
Confidence 45689999999999999999999999999 999999998 57899999999999999999999984 2 478999999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999887543
No 252
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=117.06 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=72.4
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC--C
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD--D 121 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~--~ 121 (342)
...+.++|||+|||+++|+++|+++|++||+ |.+|.++++ ++||||+|.+.++|++|++.|++. .++ +
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~--~~~~~g 82 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGS-IRTIDHVKG-------DSFAYIQYESLDAAQAACAKMRGF--PLGGPD 82 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSC-EEEEEECSS-------SCCEEEEESSHHHHHHHHHHHTTC--BCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeCC-------CCEEEEEECCHHHHHHHHHHHCCC--EeCCCC
Confidence 3456789999999999999999999999999 999999764 689999999999999999999986 667 9
Q ss_pred CCCeeecCCCCC
Q 019327 122 NAPTVSWADPRN 133 (342)
Q Consensus 122 ~~i~v~~~~~~~ 133 (342)
+.|.|+|+.++.
T Consensus 83 ~~l~V~~a~~~~ 94 (97)
T 1why_A 83 RRLRVDFAKSGP 94 (97)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998764
No 253
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-17 Score=122.15 Aligned_cols=83 Identities=8% Similarity=0.057 Sum_probs=75.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|++||. |.++.++.+ ..++++++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQV-IPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCC-CTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHTTTC--EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCC-ccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHhCCC--eeCCeEEE
Confidence 34578999999999999999999999999 988888887 578899999999999999999999999986 78999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
|+++...
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998754
No 254
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=117.68 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=70.4
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC-ceeCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK-YEIDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~ 217 (342)
...++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++|++.||+ ..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34689999999999999999999999999 6665552 279999999999999999999999 99999999999
Q ss_pred eccCCCCC
Q 019327 218 LAKPQADQ 225 (342)
Q Consensus 218 ~a~~~~~~ 225 (342)
+++++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 255
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-18 Score=131.17 Aligned_cols=85 Identities=21% Similarity=0.326 Sum_probs=79.5
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEE--------EEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITK--------VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
...++|||+|||.++++++|+++|++||.|.. |.|+.++.+..+++||||+|.+.++|++|++.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34689999999999999999999999999998 9999998888889999999999999999999999999999
Q ss_pred cEEEEEeccCCCC
Q 019327 212 QVLDCSLAKPQAD 224 (342)
Q Consensus 212 ~~i~v~~a~~~~~ 224 (342)
+.|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987664
No 256
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=119.58 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=73.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEE-EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~-v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
...++|||+|||+++|+++|+++|++||. |.+ |.|+.+ .+++++|||||+|.+.++|++|++. ++. .++++.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A~~~-~~~--~~~gr~i 86 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALKK-HKE--RIGHRYI 86 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCE-EEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHTT-TTC--CSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-cceeEEEEEC--CCCCcceEEEEEECCHHHHHHHHHh-Ccc--hhCCcEE
Confidence 45689999999999999999999999998 887 888887 6899999999999999999999997 664 7899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|.++....
T Consensus 87 ~v~~~~~~~ 95 (104)
T 1wg5_A 87 EIFKSSRAE 95 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEECCHHH
Confidence 999887654
No 257
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=9.4e-17 Score=119.57 Aligned_cols=84 Identities=20% Similarity=0.402 Sum_probs=76.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++| . |.+|+|+++ ..+++++|||||+|.+.++|++|+ .|++. .+.++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l 85 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEAL-TYDGA--LLGDRSL 85 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHG-GGTTC--EETTEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeec-CCCCccceEEEEEECCHHHHHHHH-hhCCC--eECCeEE
Confidence 3456899999999999999999999999 4 999999999 678999999999999999999999 89885 8899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++.+...
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999987754
No 258
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=7.2e-17 Score=118.81 Aligned_cols=82 Identities=27% Similarity=0.471 Sum_probs=74.4
Q ss_pred cCceEEEEecCCCCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
...++|||+|||.++++++|+ ++|++||.|.+|.|.. ++.+++||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 346899999999999999999 9999999999999873 234489999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 019327 216 CSLAKPQAD 224 (342)
Q Consensus 216 v~~a~~~~~ 224 (342)
|++++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988654
No 259
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=120.29 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=74.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCC-----
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL----- 119 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~----- 119 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|+|+++ . ++.+++||||+|.+.++|++|++.|++..+..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRD-S-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSC-EEEEEEEEC-S-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345689999999999999999999999999 999999999 3 88999999999999999999999999973321
Q ss_pred -CCCCCeeecCCCC
Q 019327 120 -DDNAPTVSWADPR 132 (342)
Q Consensus 120 -~~~~i~v~~~~~~ 132 (342)
.+++|.|.|+.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5677888888754
No 260
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=8.9e-17 Score=114.13 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019327 48 KHRLFIGNVPRNW------GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121 (342)
Q Consensus 48 ~~~l~v~nl~~~~------te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 121 (342)
.++|||+|||+.+ ++++|+++|++||+ |.+|.+++ .+++++|||||+|.+.++|++|++.|++. .+++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-i~~v~i~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-ITNDFYPE---EDGKTKGYIFLEYASPAHAVDAVKNADGY--KLDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCC-EEEEECCC---BTTBCCCEEEEEESSHHHHHHHHTTSSSC--CCSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCC-eEEEEecC---CCCcEeEEEEEEECCHHHHHHHHHHhcCc--ccCC
Confidence 3689999999999 77999999999999 99999874 47899999999999999999999999986 7788
Q ss_pred C-CCeee
Q 019327 122 N-APTVS 127 (342)
Q Consensus 122 ~-~i~v~ 127 (342)
+ .|+|+
T Consensus 75 ~~~l~V~ 81 (81)
T 2krb_A 75 QHTFRVN 81 (81)
T ss_dssp SSCCCCC
T ss_pred ceeEEeC
Confidence 8 88763
No 261
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=115.43 Aligned_cols=79 Identities=16% Similarity=0.329 Sum_probs=69.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||+++++++|+++|++||.|.+| +.++.++. ||||+|.+.++|++|++ ||+..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45899999999999999999999999999987 33433332 99999999999999999 99999999999999987
Q ss_pred CCCCC
Q 019327 221 PQADQ 225 (342)
Q Consensus 221 ~~~~~ 225 (342)
++...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 66543
No 262
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=123.27 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=77.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|++||+ |.+|+|+.+ . +++++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~ 107 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGT-LKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQYKGV--PLDGRPMD 107 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSC-CSEEEEECC-S-SSSCCSEEEEEESSHHHHHHHHHHHTTE--ESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHHcCCC--EECCcEEE
Confidence 45579999999999999999999999999 999999999 3 8899999999999999999999999985 78999999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|+++.+...
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987654
No 263
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-17 Score=129.06 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=75.7
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
.....+|||+|||+++++++|+++|++||.|.++.++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999886666666677779999999999999999999 999999999999999
Q ss_pred ccCCC
Q 019327 219 AKPQA 223 (342)
Q Consensus 219 a~~~~ 223 (342)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98754
No 264
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=2e-16 Score=120.26 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=74.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||.++++++|+++|++||.|.+|.|+.+.. +++||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 458999999999999999999999999999999987643 38999999999999999999999999999999999998
Q ss_pred CCCC
Q 019327 221 PQAD 224 (342)
Q Consensus 221 ~~~~ 224 (342)
++..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7543
No 265
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=120.84 Aligned_cols=83 Identities=12% Similarity=0.277 Sum_probs=73.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHH----HHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMR----KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~----~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
..+.++|||+|||+.+++++|+ ++|++||+ |.+|.+.+ +++++|||||+|.+.++|++|++.|++. .+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~-I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~lng~--~l~ 98 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGD-ILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAFQGY--PFQ 98 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSC-EEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHSTTC--CCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCC-eEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHHCCC--EeC
Confidence 3457899999999999999876 69999999 99988753 5678999999999999999999999996 788
Q ss_pred CCCCeeecCCCCCc
Q 019327 121 DNAPTVSWADPRNA 134 (342)
Q Consensus 121 ~~~i~v~~~~~~~~ 134 (342)
++.|.|.|+.....
T Consensus 99 gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 GNPLVITFSETPQS 112 (127)
T ss_dssp TSCCEEEECCCCCH
T ss_pred CCEEEEEEccCcch
Confidence 99999999987754
No 266
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=123.05 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=76.5
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCc---EEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
.....+|||+|||+++|+++|+++|+.||. |.+|.|+.++. +.++|||||+|.+.++|++||+ +|+..+.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999998 89999999988 6669999999999999999999 899999999999
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|.++.+++
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99998654
No 267
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=7.8e-17 Score=117.16 Aligned_cols=81 Identities=12% Similarity=0.243 Sum_probs=74.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|++| . |.+|.|+++ .+++++|||||+|.+.++|++|++ +++. .++++.|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~-i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~~g~--~~~gr~i~ 80 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-K-PVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-CNRE--YMGGRYIE 80 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-C-CSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-SCSE--EETTEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-C-ceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-hCCc--eeCCcEEE
Confidence 456899999999999999999999999 7 999999998 688999999999999999999999 9985 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|.++.++.
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99988764
No 268
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.4e-17 Score=119.70 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=72.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
....++|||+|||+++|+++|+++|++||. + +|+|+.+ . +++++|||||+|.+.++|++|++ +++. .++++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~-~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~-~~~~--~~~gr~i 84 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-M-RVHIEIG-P-DGRVTGEADVEFATHEDAVAAMA-KDKA--NMQHRYV 84 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-S-EEEEEES-S-SSCEEEEEEEECSSSHHHHHHHT-TSSC--CSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-e-EEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHH-hCCC--eECCcEE
Confidence 345689999999999999999999999995 6 9999999 3 89999999999999999999995 6764 8899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|.++.+..
T Consensus 85 ~V~~~~~~~ 93 (102)
T 1wez_A 85 ELFLNSTAG 93 (102)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999877654
No 269
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=9.6e-17 Score=136.81 Aligned_cols=82 Identities=21% Similarity=0.415 Sum_probs=75.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhC--CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIG--PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G--~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..++|||+||++++|+++|+++|++|| + |++|+|++| ..+++++|||||+|.+.++|++||+.|++. .|+++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~-v~~v~i~~d-~~tg~skGfaFV~f~~~~~a~~Ai~~lng~--~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVND-ILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLLPKR--ELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCC-EEEEEEEEC-TTTCCEEEEEEEEESCTTHHHHHHTTSTTS--CBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcc-eEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHcCCC--eECCEEe
Confidence 457899999999999999999999999 8 999999999 689999999999999999999999999986 7899999
Q ss_pred eeecCCCC
Q 019327 125 TVSWADPR 132 (342)
Q Consensus 125 ~v~~~~~~ 132 (342)
.|.++.+.
T Consensus 143 ~V~~a~~~ 150 (229)
T 3q2s_C 143 VVTPVNKQ 150 (229)
T ss_dssp EEEECCHH
T ss_pred EEEECCCC
Confidence 99988654
No 270
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-17 Score=123.00 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=75.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHH---HHHHhhCCCeEEEEEeeCCCCC---CCCceEEEEEecCHHHHHHHHHHhCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMR---KAVTKIGPGVISIELVKDPQNA---NQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~---~~f~~~G~~v~~v~~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 119 (342)
...++|||+|||+++++++|+ ++|++||+ |.+|.|+++ ..+ ++++|||||+|.+.++|++|++.|++. .+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~-i~~v~i~~~-~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~--~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGK-IHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV--VV 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSC-EEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE--EE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCC-EEEEEEecC-CCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC--EE
Confidence 346899999999999999999 99999999 999999988 333 356799999999999999999999985 78
Q ss_pred CCCCCeeecCCCCC
Q 019327 120 DDNAPTVSWADPRN 133 (342)
Q Consensus 120 ~~~~i~v~~~~~~~ 133 (342)
+++.|.|+++.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998875
No 271
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.9e-16 Score=129.53 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=78.7
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||..+++++|+++|++||.|++|.|+.+. ++.+++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 666799999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 986543
No 272
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=115.86 Aligned_cols=79 Identities=14% Similarity=0.315 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEE-EecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
..++|||+|||+++++++|+++|++||.|.++ .|+.++.+ +.|||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999999 58877543 44999999999999999999999999999999999
Q ss_pred cCCC
Q 019327 220 KPQA 223 (342)
Q Consensus 220 ~~~~ 223 (342)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 273
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.3e-17 Score=120.09 Aligned_cols=84 Identities=15% Similarity=0.343 Sum_probs=76.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCC-CCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA-NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
.+.++|||+|||+++++++|+++|++|| |.+|.|+.+ ..+ ++++|||||+|.+.++|++|+ .|++. .++++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPRE-PSNPERLKGFGYAEFEDLDSLLSAL-SLNEE--SLGNKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBC-SSCTTSBCSCEEEEESSHHHHHHHH-GGGTC--EETTEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecC-CCCCCCcCeEEEEEECCHHHHHHHH-hcCCC--EeCCcEE
Confidence 4568999999999999999999999998 999999998 444 899999999999999999999 89985 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|+++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887543
No 274
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=3.3e-16 Score=119.96 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=72.6
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCce-EEEEeCCHHHHHHHHHhcCCceeCC--cEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY-GFVHFAERSSAMKALKNTEKYEIDG--QVLDC 216 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v 216 (342)
.....|||+||++.+|+++|+++|++||.|.+|.|.... ++| |||+|++.++|++|++.||+..|.+ +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345788999999999999999999999999999987642 677 9999999999999999999999988 99999
Q ss_pred EeccCCCC
Q 019327 217 SLAKPQAD 224 (342)
Q Consensus 217 ~~a~~~~~ 224 (342)
+|++++.-
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99998754
No 275
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=4.2e-17 Score=127.44 Aligned_cols=117 Identities=12% Similarity=0.144 Sum_probs=72.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCccCCeEE--------EEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEE
Q 019327 10 KGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 81 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i--------~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~ 81 (342)
+|+||.+|...+.+..++...... ..+... .-......++|||+|||+++|+++|+++|++||. ++|.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi--~~v~i 77 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNP--VRVHI 77 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCCC--SEEEC
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEE
Confidence 478899999888888877754422 222111 1112345679999999999999999999999994 49999
Q ss_pred eeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCc
Q 019327 82 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 82 ~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
+.| . .++++|||||+|.+.++|++|| .+++. .++++.|.|.++.+...
T Consensus 78 ~~d-~-~g~srGfaFV~F~~~e~A~~Al-~~~g~--~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIG-P-DGRVTGEADVEFATHEEAVAAM-SKDRA--NMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCS-S-SSCSSCCCEEECSHHHHHHHHT-TCCSC--SSSSCCCCCEECCCSCC
T ss_pred EEC-C-CCCCceEEEEEeCCHHHHHHHH-hhCCC--EECCEEEEEEECCCCCC
Confidence 999 3 4999999999999999999999 67764 88999999998876643
No 276
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=7.9e-17 Score=119.26 Aligned_cols=83 Identities=18% Similarity=0.388 Sum_probs=73.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|++|| |.+|+|++++..+++++|||||+|.+.++|++|+ .|++. .++++.|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~--~~~g~~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE--SLGNRRIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC--CBTTBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC--EECCeEEE
Confidence 4568999999999999999999999999 9999999983258999999999999999999999 89985 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|+++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998763
No 277
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=7.9e-17 Score=119.76 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=75.7
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|||+++++++|+++|++||.|.+|.|+.++ ++.+++||||+|++.++|++|++ ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 77779999999999999999999 899999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876643
No 278
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=121.70 Aligned_cols=82 Identities=23% Similarity=0.504 Sum_probs=74.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
....++|||+|||.++++++|+++|++||+ |.+|+++.+ .+.++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~---~~~~kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l 99 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGK-ILDVEIIFN---ERGSKGFGFVTFENSADADRAREKLHGT--VVEGRKI 99 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCC-CSCEEECCB---TTBCTTEEEEECCCSHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCC-EEEEEEEEC---CCCCceEEEEEECCHHHHHHHHHHcCCC--EECCEEE
Confidence 345689999999999999999999999999 999999988 2348999999999999999999999986 7899999
Q ss_pred eeecCCCC
Q 019327 125 TVSWADPR 132 (342)
Q Consensus 125 ~v~~~~~~ 132 (342)
.|+++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999875
No 279
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=112.99 Aligned_cols=79 Identities=22% Similarity=0.433 Sum_probs=71.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.++ ++||||+|.+.++|++|++.|++. .++++.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 72 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGK-VLECDII---------KNYGFVHIEDKTAAEDAIRNLHHY--KLHGVNI 72 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSC-EEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTC--BCSSCBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCC--ccCCcEE
Confidence 346789999999999999999999999999 9999997 469999999999999999999985 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|+++.+....
T Consensus 73 ~v~~a~~~~~~ 83 (90)
T 2dnq_A 73 NVEASKNKSKA 83 (90)
T ss_dssp EEECSSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999877543
No 280
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=7.6e-17 Score=112.69 Aligned_cols=75 Identities=25% Similarity=0.409 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecC
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 129 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~ 129 (342)
+|||+|||+++++++|+++|++||+ |.+|.++.+ ..++.++|||||+|.+.++|++|++. ++ ..++++.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~-~~--~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEK-KY--HNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSC-CSEECCCCS-CCCSSSCCCEEEECSSSHHHHHHHTT-SS--CCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCCcCCEEEEEECCHHHHHHHHHh-CC--CeECCEEEEEEEC
Confidence 6999999999999999999999999 999999998 57789999999999999999999985 44 4789999999875
No 281
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=117.55 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=71.8
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEe
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 218 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 218 (342)
....++|||+|||.++++++|+++|++||.|..+ ..+..+++||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456999999999999999999999999988766 33445589999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987654
No 282
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=2.5e-16 Score=119.61 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=67.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcE-----EE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-----LD 215 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~-----i~ 215 (342)
...+|||+|||+++++++|+++|++||.|++|.|+.+ +||||+|++.++|++||+.||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999876 89999999999999999999999999998 77
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|..+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77666543
No 283
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1.8e-16 Score=122.27 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=75.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||+|||+++|+++|+++|++||+ |.+|.++++ ..++.++|||||+|.+.++|++|+ .|++. .++++.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGS-INRITILCD-KFSGHPKGYAYIEFAERNSVDAAV-AMDET--VFRGRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSC-EEEEEEEEE-CTTSSCEEEEEEEESSHHHHHHHH-TTTTC--EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcccEEEEEECCHHHHHHHH-hcCCC--eECCeEEEE
Confidence 3579999999999999999999999999 999999998 578999999999999999999999 78885 789999999
Q ss_pred ecCCCCC
Q 019327 127 SWADPRN 133 (342)
Q Consensus 127 ~~~~~~~ 133 (342)
.++.+..
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9988654
No 284
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=2.8e-16 Score=124.94 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC--cEEEEEe
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSL 218 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 218 (342)
...+|||+||++.+|+++|+++|++||.|++|.|..++ +++||||+|++.++|++|++.||+..|.+ +.|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 35789999999999999999999999999999997542 37899999999999999999999999965 9999999
Q ss_pred ccCCCC
Q 019327 219 AKPQAD 224 (342)
Q Consensus 219 a~~~~~ 224 (342)
++++..
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 998753
No 285
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=117.30 Aligned_cols=81 Identities=12% Similarity=0.407 Sum_probs=73.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
....++|||+|||+++++++|+++|++||+ |.+|+|+++ ++||||+|.+.++|++|++.|++. .++++.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 91 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQ-IMEIRVFPE-------KGYSFVRFSTHESAAHAIVSVNGT--TIEGHVV 91 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeCC-------CCEEEEEECCHHHHHHHHHHcCCC--EECCcEE
Confidence 345789999999999999999999999999 999999876 789999999999999999999985 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.|+.+....
T Consensus 92 ~v~~a~~~~~~ 102 (109)
T 1x4g_A 92 KCYWGKESPDM 102 (109)
T ss_dssp EEECCCCCCSS
T ss_pred EEEecCCCCCC
Confidence 99999887543
No 286
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1e-16 Score=122.86 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=73.0
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEE--EEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
....+|||+|||+++|+++|+++|++| .|+ +|+|+.++. +.++|||||+|++.++|++||+. ++..|.|+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 346889999999999999999999999 677 999999988 66699999999999999999996 7799999999999
Q ss_pred eccCCC
Q 019327 218 LAKPQA 223 (342)
Q Consensus 218 ~a~~~~ 223 (342)
.+.+++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 287
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=114.88 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=70.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|++||. |. +.++.+ .+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-v~-~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 87 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGS-VP-LRLTWQ-----GPRRRAFLHYPDSAAAQQAVSCLQGL--RLGTDTLR 87 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTC-CC-SEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTC--CSSSSCCE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCC-EE-EEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCC--EECCcEEE
Confidence 34689999999999999999999999999 86 666654 57899999999999999999999986 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|+++.++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 288
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.7e-17 Score=122.21 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=76.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++|+++|+++|++||+ |.+|.|+.+ ..++.++|||||+|.+.++|++|++. ++ +.++++.|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~-~~--~~~~g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGK-LTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMAA-RP--HSIDGRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCC-CSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHTS-CS--EEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEEC-CCCCCcCceEEEEeCCHHHHHHHHHh-CC--cEECCEEEEE
Confidence 4479999999999999999999999999 999999998 67899999999999999999999987 65 4889999999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99988754
No 289
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1e-16 Score=120.33 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=70.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhC-CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G-~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
...++|||+|||+++++++|+++|++|| + |..+.+..+ .++|||||+|.+.++|++|++.|++. .++++.|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~-v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~lng~--~l~Gr~i 97 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLE-TTFSSVNTR-----DFDGTGALEFPSEEILVEALERLNNI--EFRGSVI 97 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCC-CSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHTTTE--EETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCe-eEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHcCCC--EECCeEE
Confidence 4457999999999999999999999999 8 999988543 47899999999999999999999985 8899999
Q ss_pred eeecCCCC
Q 019327 125 TVSWADPR 132 (342)
Q Consensus 125 ~v~~~~~~ 132 (342)
.|+++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998754
No 290
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=116.95 Aligned_cols=79 Identities=30% Similarity=0.497 Sum_probs=72.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++|+++|+++|++||+ |.+|+++++ ++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~ 82 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGK-AGEVFIHKD-------KGFGFIRLETRTLAEIAKVELDNM--PLRGKQLR 82 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCC-CSEEEEETT-------TTEEEEECSSSHHHHHHHHHHTTC--CBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCC-eEEEEEecC-------CCEEEEEECCHHHHHHHHHHhCCC--EeCCceEE
Confidence 45679999999999999999999999999 999999865 789999999999999999999986 78899999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|.++.+...
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpj_A 83 VRFACHSAS 91 (99)
T ss_dssp EEESSCCSC
T ss_pred EEEcCCCCC
Confidence 999987754
No 291
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=7e-16 Score=128.00 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCeeecCCCCCcccc-----cccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEec
Q 019327 101 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS-----AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 175 (342)
Q Consensus 101 ~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~~~~~~-----~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~ 175 (342)
+.+.+..|++......+.+......+........... .....++|||+|||+++++++|+++|++||.|.+|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 5677788887764344566666666665532221111 23346899999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCC
Q 019327 176 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 224 (342)
Q Consensus 176 ~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 224 (342)
++.. +.++|||||+|++.++|++|+..++ ..++|+.|.|.+++.-..
T Consensus 143 ~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 143 RTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYFA 189 (193)
T ss_dssp ECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC--
T ss_pred ECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHHH
Confidence 8876 5569999999999999999998765 589999999999876543
No 292
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.8e-17 Score=122.05 Aligned_cols=82 Identities=13% Similarity=0.305 Sum_probs=75.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||+|||+++++++|+++|++||. |.+|+|+.+ ..++.++|||||+|.+.++|++|+ .|++. .++++.|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGK-VRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ--RLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSC-EEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHH-HHTTE--EETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC-EeEEEEEec-CCCCccCcEEEEEeCcHHHHHHHH-HcCCC--EeCCeEEEE
Confidence 3479999999999999999999999999 999999998 577899999999999999999999 89985 789999999
Q ss_pred ecCCCCC
Q 019327 127 SWADPRN 133 (342)
Q Consensus 127 ~~~~~~~ 133 (342)
.++.+..
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9986543
No 293
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=8e-16 Score=117.37 Aligned_cols=78 Identities=26% Similarity=0.238 Sum_probs=70.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCce-EEEEeCCHHHHHHHHHhcCCceeCC--cEEEEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY-GFVHFAERSSAMKALKNTEKYEIDG--QVLDCS 217 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 217 (342)
....|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|++.++|++|++.||+..|.+ +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3466789999999999999999999999999999652 386 9999999999999999999999987 699999
Q ss_pred eccCCCC
Q 019327 218 LAKPQAD 224 (342)
Q Consensus 218 ~a~~~~~ 224 (342)
+|+++..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9998763
No 294
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=108.76 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=66.9
Q ss_pred eEEEEecCCCCCCHHH----HHHHHhcC-CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 143 KALYVKNLPKDITQDR----LKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~----l~~~f~~~-G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
+.|||.|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|++..|.||+|+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 55899999 5999981 3999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 019327 218 LAKPQADQKT 227 (342)
Q Consensus 218 ~a~~~~~~~~ 227 (342)
+|+.+.+.-.
T Consensus 80 ~A~~~sd~~~ 89 (96)
T 2diu_A 80 FTPKNRELCE 89 (96)
T ss_dssp SSCCSCCCCC
T ss_pred ecCCCcceeE
Confidence 9998776543
No 295
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.7e-16 Score=116.58 Aligned_cols=76 Identities=21% Similarity=0.384 Sum_probs=69.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||+|||.++++++|+++|++||. |.+|++++ +++||||+|.+.++|++|++.|++. .++++.|.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V 95 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGF-ILDFKHYP-------EKGCCFIKYDTHEQAAVCIVALANF--PFQGRNLRT 95 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSC-CSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTC--EETTEECCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCC-EEEEEEec-------CCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEE
Confidence 3579999999999999999999999999 99999974 3789999999999999999999985 788999999
Q ss_pred ecCCCC
Q 019327 127 SWADPR 132 (342)
Q Consensus 127 ~~~~~~ 132 (342)
+|+.++
T Consensus 96 ~~a~~~ 101 (101)
T 2la4_A 96 GWGKER 101 (101)
T ss_dssp CBCCCC
T ss_pred EeccCC
Confidence 998763
No 296
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=118.22 Aligned_cols=78 Identities=19% Similarity=0.393 Sum_probs=71.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCC----
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD---- 121 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~---- 121 (342)
...++|||+|||+++|+++|+++|++||+ |++|+|+.+ +||||+|.+.++|++|++.|++. .+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~~~ 81 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD-VCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGE 81 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC-EEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSE--EEECTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcC--CccCCcCc
Confidence 45689999999999999999999999999 999999875 79999999999999999999986 6777
Q ss_pred -CCCeeecCCCCCc
Q 019327 122 -NAPTVSWADPRNA 134 (342)
Q Consensus 122 -~~i~v~~~~~~~~ 134 (342)
+.|.|+++.+...
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 8999999987654
No 297
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=124.66 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=73.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|+++++ ..+++++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 136 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGD-ITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIR 136 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSC-EEEEECCCC-TTTCCCCSEEEEEESCHHHHHHHHHHSTEE--EETTEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCC-EEEEEEeec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCC--EECCEEEE
Confidence 45689999999999999999999999999 999999998 578899999999999999999999999985 78899999
Q ss_pred eecC
Q 019327 126 VSWA 129 (342)
Q Consensus 126 v~~~ 129 (342)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 298
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=111.85 Aligned_cols=75 Identities=21% Similarity=0.430 Sum_probs=68.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh-CCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM-SNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~~~~i 124 (342)
.+.++|||+|||+++++++|+++|++||+ |.+|.++++ ++||||+|.+.++|++|++.| ++. .++++.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l~~~~--~~~g~~l 79 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGE-IRTITVVQR-------QQCAFIQFATRQAAEVAAEKSFNKL--IVNGRRL 79 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSC-EEEEEEEGG-------GTEEEEEESSHHHHHHHHHTTTTTC--EETTEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCC-EeEEEEECC-------CCEEEEEECCHHHHHHHHHHhcCCe--eECCCEE
Confidence 45689999999999999999999999999 999999875 789999999999999999988 764 7889999
Q ss_pred eeecCC
Q 019327 125 TVSWAD 130 (342)
Q Consensus 125 ~v~~~~ 130 (342)
.|+|+.
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999874
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-17 Score=120.92 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=73.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||. |.. .++.+ ..+++++|||||+|.+.++|++|++ |++. .+.++.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~-~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFA-KND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-LTGL--KVFGNEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHH-HHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-GGGC--CBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-cce-EEEec-CCCCCcCcEEEEEECCHHHHHHHHh-cCCc--EECCcEE
Confidence 345679999999999999999999999998 877 55555 4678899999999999999999998 9985 7889999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++.++..
T Consensus 88 ~V~~a~~~~~ 97 (101)
T 1fj7_A 88 KLEKPKGRDG 97 (101)
T ss_dssp EEECCSCCCC
T ss_pred EEEEcCCCCC
Confidence 9999987653
No 300
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-17 Score=123.80 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=73.6
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcE----EEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKI----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i----~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
....+|||+|||+++|+++|+++|++||.| .+|.|+.+. ++.++|||||+|++.++|++||+. |+..|.++.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345899999999999999999999999875 689999885 566699999999999999999997 99999999999
Q ss_pred EEeccCCC
Q 019327 216 CSLAKPQA 223 (342)
Q Consensus 216 v~~a~~~~ 223 (342)
|..+.+++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=1e-15 Score=110.57 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=63.1
Q ss_pred ccCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCc--eeCCcEEEE
Q 019327 139 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY--EIDGQVLDC 216 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~--~~~g~~i~v 216 (342)
.....+|||+|||+++|+++|+++|++||.|++|.|+.+ +||||||+|++.++|++ +++. .+.++.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 344699999999999999999999999999999999985 48999999999999984 3444 456999999
Q ss_pred EeccCCCC
Q 019327 217 SLAKPQAD 224 (342)
Q Consensus 217 ~~a~~~~~ 224 (342)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99998764
No 302
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=111.90 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=71.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|+++++ ||||+|.+.++|++|++.|++. .++++.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~~~---------~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 73 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGR-VIECDVVKD---------YAFVHMEKEADAKAAIAQLNGK--EVKGKRI 73 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSC-EEEEEECSS---------CEEEEESCHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCC-EEEEEEECC---------EEEEEECCHHHHHHHHHHhCCC--EECCcEE
Confidence 346789999999999999999999999999 999999754 9999999999999999999985 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|.++.+...
T Consensus 74 ~v~~a~~~~~ 83 (90)
T 2dnp_A 74 NVELSTKGQK 83 (90)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987754
No 303
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=117.57 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=72.6
Q ss_pred cCCeEEEcCCCCCC------CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 47 AKHRLFIGNVPRNW------GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 47 ~~~~l~v~nl~~~~------te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
..++|||+|||+.+ |+++|+++|++||+ |.+|.|++ .+++++|||||+|.+.++|++|++.|++. .++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-v~~v~i~~---~~g~~~G~afV~f~~~~~A~~Ai~~l~g~--~~~ 87 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-ITNDFYPE---EDGKTKGYIFLEYASPAHAVDAVKNADGY--KLD 87 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSC-EEEEECCC---BTTBSCCEEEEEECSSSHHHHHHHHCSSE--ECS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCC-EEEEEeeC---CCCCeeeEEEEEECCHHHHHHHHHHhCCc--ccC
Confidence 35799999999999 78999999999999 99999884 47899999999999999999999999985 788
Q ss_pred CC-CCeeecCCCC
Q 019327 121 DN-APTVSWADPR 132 (342)
Q Consensus 121 ~~-~i~v~~~~~~ 132 (342)
++ .|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998754
No 304
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=3.5e-16 Score=112.88 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||+++++++|+++|++| .|.++.|. .+++||||+|.+.++|++|++.||+..+.|+.|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35889999999999999999999999 99999885 348999999999999999999999999999999999997
Q ss_pred CCC
Q 019327 221 PQA 223 (342)
Q Consensus 221 ~~~ 223 (342)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 544
No 305
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-17 Score=123.27 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=74.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCe-EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV-ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v-~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
..+.++|||+|||+++|+++|+++|+.||. | .+|+|+.+ . +++++|||||+|.+.++|++|++. ++ ..++++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~-~~--~~~~gr~ 85 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPV-DENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL-HR--KKLNGRE 85 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCC-CSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG-CS--EEETTEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCC-cCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh-CC--CccCCeE
Confidence 345789999999999999999999999998 8 88999999 3 899999999999999999999987 66 4889999
Q ss_pred CeeecCCCCC
Q 019327 124 PTVSWADPRN 133 (342)
Q Consensus 124 i~v~~~~~~~ 133 (342)
|.|.++.+..
T Consensus 86 i~v~~a~~~~ 95 (114)
T 2cpy_A 86 AFVHVVTLED 95 (114)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999987653
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=118.27 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=69.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
+.++|||+|||+++++++|+++|++||. |.+|.|+++ ++||||+|.+.++|++|++.|++. .++++.|.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~-------~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V 78 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGS-LGRVLLPEG-------GITAIVEFLEPLEARKAFRHLAYS--KFHHVPLYL 78 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCSS-------SSCEEEEESCHHHHHHHHHHHTTC--BSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCC--EECCeEEEE
Confidence 4579999999999999999999999999 999988653 789999999999999999999986 789999999
Q ss_pred ecCCCCC
Q 019327 127 SWADPRN 133 (342)
Q Consensus 127 ~~~~~~~ 133 (342)
.|+....
T Consensus 79 ~~a~~~~ 85 (111)
T 1whx_A 79 EWAPIGV 85 (111)
T ss_dssp EEEETTT
T ss_pred EECCCCc
Confidence 9987543
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-16 Score=120.70 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=72.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||. |..|.+..+ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQE-KKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLVNGY--KLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHH-SSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHSTTC--BCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-ccceEEEEE-cCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEE
Confidence 345689999999999999999999999998 843322222 126788999999999999999999999985 7899999
Q ss_pred eeecCCCCCcc
Q 019327 125 TVSWADPRNAE 135 (342)
Q Consensus 125 ~v~~~~~~~~~ 135 (342)
.|.++.+....
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999887543
No 308
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.9e-17 Score=124.19 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=72.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++|+++|+++|+.||. |.++.++.+ ..+++++|||||+|.+.++|++||+ +++. .++++.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~g~--~~~gr~i~ 97 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDI-VEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-RHKQ--YMGNRFIQ 97 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCB-CTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-SCSB--CSTTSCBE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-ccceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-hCCC--eECCcEEE
Confidence 45689999999999999999999999999 888556555 4689999999999999999999999 8875 88999999
Q ss_pred eecCCCC
Q 019327 126 VSWADPR 132 (342)
Q Consensus 126 v~~~~~~ 132 (342)
|.++.++
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988764
No 309
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-16 Score=116.99 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=71.3
Q ss_pred eEEEEecC----CCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCC----H-HH---HHHHHH--hcCCce
Q 019327 143 KALYVKNL----PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE----R-SS---AMKALK--NTEKYE 208 (342)
Q Consensus 143 ~~l~v~~l----~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~----~-~~---a~~a~~--~l~~~~ 208 (342)
.+|||+|| |+.+++++|+++|++||+|.++.++.|+.|+.++|||||+|.+ + ++ |.+|++ .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 3 32 888988 789999
Q ss_pred eCCcEEEEEecc
Q 019327 209 IDGQVLDCSLAK 220 (342)
Q Consensus 209 ~~g~~i~v~~a~ 220 (342)
|+|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 310
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=121.05 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=70.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCe----EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV----ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v----~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 121 (342)
...++|||+|||+++|+++|+++|++||. | .+|.|+.+ .+++++|||||+|.+.++|++|++. ++ ..+++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~-v~g~v~~v~i~~d--~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCP-ITGGKEGILFVTY--PDGRPTGDAFVLFACEEYAQNALRK-HK--DLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSC-CTTGGGGEEEEEC--TTSCEEEEEEECCSSHHHHHHHHTT-TT--EESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCC-ccCCcceEEEEEC--CCCCEeeEEEEEECCHHHHHHHHHh-CC--CeeCC
Confidence 34679999999999999999999999997 5 68999998 4899999999999999999999986 65 37889
Q ss_pred CCCeeecCCC
Q 019327 122 NAPTVSWADP 131 (342)
Q Consensus 122 ~~i~v~~~~~ 131 (342)
+.|.|..+.+
T Consensus 95 R~i~V~~a~~ 104 (123)
T 2dha_A 95 RYIELFRSTA 104 (123)
T ss_dssp CEECCEEECH
T ss_pred eEEEEEECCH
Confidence 9888876653
No 311
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=3e-15 Score=118.99 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
-.+|||+||++.+|+++|+++|++||+ |++|.|+.. .+++||||+|.+.++|++|++.|++..+.-+++.|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~-V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGT-VLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSC-EEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCC-EEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 357899999999999999999999999 999999765 25789999999999999999999997433245999999
Q ss_pred cCCCCCc
Q 019327 128 WADPRNA 134 (342)
Q Consensus 128 ~~~~~~~ 134 (342)
|+.++..
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9988754
No 312
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=7.6e-16 Score=125.92 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=77.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||+ |++|.|+.+ . ++.+++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d-~-~g~~kG~afV~F~~~~~A~~Ai~~lng~--~l~Gr~l~ 160 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGT-LKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQYKGV--PLDGRPMD 160 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSC-CSEEEECCC-T-TSSCSCCEEEEESCHHHHHHHHHHSTTC--BCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEC-C-CCCEeeEEEEEeCCHHHHHHHHHHhCCC--EECCEEEE
Confidence 34579999999999999999999999999 999999998 3 8899999999999999999999999985 88999999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|+++.....
T Consensus 161 V~~a~~~~~ 169 (177)
T 2f3j_A 161 IQLVASQID 169 (177)
T ss_dssp EEEESSGGG
T ss_pred EEEecCCCC
Confidence 999887643
No 313
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=117.07 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=73.5
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
...+.++|||+|||+++|+++|+++|++||. | +++.+ .++++++||||+|.+.++|++|++.|++. .++++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-v---~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~ 82 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATF-I---KVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKR--EIEGRA 82 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSE-E---ECCBC--SSSCBCSEEEEECSSHHHHHHHHHHTSSE--EETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCE-E---EEEEC--CCCCEeeEEEEEECCHHHHHHHHHHhCCC--EeCCeE
Confidence 3456789999999999999999999999997 6 56665 57889999999999999999999999985 788999
Q ss_pred CeeecCCCCCc
Q 019327 124 PTVSWADPRNA 134 (342)
Q Consensus 124 i~v~~~~~~~~ 134 (342)
|.|.++.+...
T Consensus 83 l~v~~a~~~~~ 93 (101)
T 2fc9_A 83 IRLELQGPRGS 93 (101)
T ss_dssp EEEEECSSCCC
T ss_pred EEEEEcCCCCC
Confidence 99999987754
No 314
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=1.7e-16 Score=123.58 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=74.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCccCCeE------EEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCC--eEEEEE
Q 019327 10 KGYAFVTFRTKELASQAIEELNSCELKGKK------IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPG--VISIEL 81 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~~~~g~~------i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~--v~~v~~ 81 (342)
+|++|.+|...+.+.......-.. ..+.. ..-......++|||+|||+++|+++|+++|++||.. |.+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i 79 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF 79 (136)
T ss_dssp -----------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE
T ss_pred CccccccccchHHHHhhccCCCcc-cCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE
Confidence 467777777777666555432211 11110 011223456899999999999999999999999973 578999
Q ss_pred eeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 82 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 82 ~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
++| .. ++++|||||+|.+.++|++|++ +++. .++++.|.|.++.+.
T Consensus 80 ~~d-~~-g~srG~aFV~F~~~e~a~~Al~-~~g~--~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 80 IYT-RE-GRQSGEAFVELGSEDDVKMALK-KDRE--SMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEC-SS-SCEEEEEEEECSSHHHHHHHHT-TTEE--ESSSSEEEEEECCHH
T ss_pred EEC-CC-CCCCeEEEEEECCHHHHHHHHh-cCCC--EECCEEEEEEECChH
Confidence 999 34 9999999999999999999999 8875 789999999887543
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=3.8e-16 Score=119.72 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=70.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeE--EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI--SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~--~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
....++|||+|||+++|+++|+++|++| . |+ +|+|+.| .. ++++|||||+|.+.++|++|++. ++ ..++++
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~-i~~~~v~i~~d-~~-GrsrGfaFV~F~~~e~A~~Al~~-~~--~~l~gR 111 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-E-IVPNGITLPVD-PE-GKITGEAFVQFASQELAEKALGK-HK--ERIGHR 111 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEEECCCC-SS-SSSCSEEEEEESSTTHHHHHHTT-TT--CCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-C-ceeeEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHH-CC--CEECCE
Confidence 3456899999999999999999999999 5 77 9999998 34 99999999999999999999986 44 378999
Q ss_pred CCeeecCCCC
Q 019327 123 APTVSWADPR 132 (342)
Q Consensus 123 ~i~v~~~~~~ 132 (342)
.|.|.++.++
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999887543
No 316
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.7e-16 Score=112.06 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=71.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++++++|+++|++||+ |.+|.++++ ||||+|.+.++|++|++.|++. .+.++.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~v~~~~~---------~afV~f~~~~~a~~A~~~l~g~--~~~g~~l 74 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGP-VIECDIVKD---------YAFVHMERAEDAVEAIRGLDNT--EFQGKRM 74 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSC-CCEEEECSS---------EEEEEESCHHHHHHHHHHHTTE--EETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEECC---------EEEEEECCHHHHHHHHHHhCCC--eeCCcEE
Confidence 345689999999999999999999999999 999999754 9999999999999999999985 7889999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.+...
T Consensus 75 ~V~~a~~~~~ 84 (92)
T 2dgt_A 75 HVQLSTSRLR 84 (92)
T ss_dssp EEEESSCCCS
T ss_pred EEEEccCCCC
Confidence 9999987754
No 317
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=1.7e-16 Score=147.80 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=77.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++|+++|+++|++||. |+.|.|+.+ ..++.++|||||+|.+.++|++||+.|++. .|+++.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~-I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~--~i~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGP-IKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHADGK--KIDGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCC-eeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHcCCC--EECCEEEE
Confidence 34579999999999999999999999999 999999998 578999999999999999999999999986 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|.++.+..
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998654
No 318
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.7e-16 Score=111.40 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=67.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
..++|||+|||+++++++|+++|++||.|.+|.|+.+ +++||||+|++.++|++|+.. ...+.++.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4589999999999999999999999999999999876 389999999999999865332 346689999999998
Q ss_pred CCCCC
Q 019327 221 PQADQ 225 (342)
Q Consensus 221 ~~~~~ 225 (342)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 319
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.6e-15 Score=109.09 Aligned_cols=72 Identities=24% Similarity=0.452 Sum_probs=67.5
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcC----C-------cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCce
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHH----G-------KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 208 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----G-------~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 208 (342)
...++|||+|||+++++++|+++|++| | .|.++.+.++ ++||||+|.+.++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 9999999876 799999999999999999 999999
Q ss_pred eCCcEEEEEe
Q 019327 209 IDGQVLDCSL 218 (342)
Q Consensus 209 ~~g~~i~v~~ 218 (342)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 320
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1e-15 Score=113.86 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=70.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++|+++|+++|++||+ |.+|.+++ +||||+|.+.++|++|++.|++. .++++.|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~~~~---------~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 76 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK-LERVKKLK---------DYAFIHFDERDGAVKAMEEMNGK--DLEGENIE 76 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC-EEEEEECS---------SCEEEEESSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEC---------CEEEEEeCCHHHHHHHHHHHCCC--ccCCCEEE
Confidence 35689999999999999999999999999 99999864 49999999999999999999985 78899999
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|.++.+....
T Consensus 77 v~~a~~~~~~ 86 (103)
T 2dgu_A 77 IVFAKPPDQK 86 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEcCCCccc
Confidence 9999877543
No 321
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=4.1e-16 Score=112.63 Aligned_cols=79 Identities=16% Similarity=0.400 Sum_probs=64.9
Q ss_pred ecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
...+.++|||+|||+++|+++|+++|++||+ |.+|+|+++ ++|||||+|.+.++|++ +++..+.+.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~-i~~v~i~~~------srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGE-VVDVFIPKP------FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEECCSS------CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC-EEEEEEeeC------CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 3456789999999999999999999999999 999999875 68999999999999984 455556778999
Q ss_pred CeeecCCCCC
Q 019327 124 PTVSWADPRN 133 (342)
Q Consensus 124 i~v~~~~~~~ 133 (342)
|.|.++.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 322
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=116.97 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeee
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 127 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~ 127 (342)
..+|||+|||+++|+++|+++|+.| . |.+|.|+.| . .++++|||||+|.+.++|++|+ .+++. .++++.|.|.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~-v~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~~~~--~~~gr~i~V~ 88 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-R-VDAVHLLKD-H-VGRNNGNGLVKFLSPQDTFEAL-KRNRM--LMIQRYVEVS 88 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-C-CCEEEECCC-T-TCCCCSEEEEECSSHHHHHHHH-HTTTE--EETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-C-eeEEEEEEC-C-CCCCCeEEEEEECCHHHHHHHH-hcCCC--eECCeEEEEE
Confidence 4689999999999999999999999 7 999999998 3 4999999999999999999999 57764 7889999998
Q ss_pred cCCCC
Q 019327 128 WADPR 132 (342)
Q Consensus 128 ~~~~~ 132 (342)
.+.+.
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 77543
No 323
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=125.65 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=72.0
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEE--EecCC---CCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEE
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKV--VIPPA---KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v--~i~~~---~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 214 (342)
...++|||+|||+++|+++|+++|++||.|..+ .++.+ ..++.+++||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345899999999999999999999999988764 11111 2345569999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 019327 215 DCSLAKPQADQ 225 (342)
Q Consensus 215 ~v~~a~~~~~~ 225 (342)
.|.++++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876543
No 324
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=9.4e-16 Score=130.11 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=77.8
Q ss_pred CCCCCCCeeecCCCCCcccccccCceEEEEecCCCCC---------CHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEE
Q 019327 118 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI---------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 188 (342)
Q Consensus 118 ~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~f 188 (342)
.+.++.....+..............++|||+||+..+ ++++|+++|++||.|++|+|+.+ ++|||
T Consensus 110 D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AF 183 (240)
T 3u1l_A 110 DCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGF 183 (240)
T ss_dssp CTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEE
T ss_pred ccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEE
Confidence 3445555544444333333445668999999999998 79999999999999999999865 89999
Q ss_pred EEeCCHHHHHHHHHhcCCcee------------CCcEEEEEeccCCCC
Q 019327 189 VHFAERSSAMKALKNTEKYEI------------DGQVLDCSLAKPQAD 224 (342)
Q Consensus 189 V~f~~~~~a~~a~~~l~~~~~------------~g~~i~v~~a~~~~~ 224 (342)
|+|.+.++|+.|++.|++..| .|+.|.|.||+....
T Consensus 184 V~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 184 VKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp EEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999999999999999999999 899999999987654
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-17 Score=124.72 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=78.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEE--------EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS--------IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~--------v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 117 (342)
.+.++|||+|||+++++++|+++|++||. |.+ |.|+.+ ..+++++|||||+|.+.++|++|++.|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-- 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGI-IKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWFDGK-- 80 (116)
Confidence 45689999999999999999999999999 988 889988 577899999999999999999999999985
Q ss_pred CCCCCCCeeecCCCCCcc
Q 019327 118 KLDDNAPTVSWADPRNAE 135 (342)
Q Consensus 118 ~~~~~~i~v~~~~~~~~~ 135 (342)
.+.++.|.|.++.++...
T Consensus 81 ~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRADF 98 (116)
Confidence 788999999999877543
No 326
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.8e-16 Score=114.32 Aligned_cols=83 Identities=20% Similarity=0.537 Sum_probs=73.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|+.| .+|.++.+ ..++.+++||||+|.+.++|++|++.|++. .++++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l 84 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKV 84 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCC--eECCeEE
Confidence 3456899999999999999999999965 46778887 578899999999999999999999999985 7899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.++..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999988754
No 327
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.8e-15 Score=111.45 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=72.3
Q ss_pred cCceEEEEecCCC-----CCCHHHHHHHHhcCCcEEEEEecCCCCC-CCCCceEEEEeCCHHHHHHHHHhcCCceeCCcE
Q 019327 140 SQVKALYVKNLPK-----DITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213 (342)
Q Consensus 140 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~G~i~~v~i~~~~~~-~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 213 (342)
..+++|+|.||.. +.++++|+++|++||.|++|.|+.++.+ ..++|++||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3468999999963 2368999999999999999999988653 466999999999999999999999999999999
Q ss_pred EEEEeccC
Q 019327 214 LDCSLAKP 221 (342)
Q Consensus 214 i~v~~a~~ 221 (342)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 328
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=4e-16 Score=114.75 Aligned_cols=83 Identities=17% Similarity=0.379 Sum_probs=74.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHH----HHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMR----KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~----~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
..+.++|||+|||+++++++|+ ++|++||. |.+|.+++ ++.++|||||+|.+.++|++|++.|++. .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~-i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~ 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ-ILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGF--PFY 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSC-EEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHHTTC--EET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCC-EEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHhCCC--EEC
Confidence 3467899999999999999999 99999999 99998864 3567899999999999999999999985 778
Q ss_pred CCCCeeecCCCCCc
Q 019327 121 DNAPTVSWADPRNA 134 (342)
Q Consensus 121 ~~~i~v~~~~~~~~ 134 (342)
++.|.|+++.+...
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 99999999988754
No 329
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=3.2e-16 Score=116.43 Aligned_cols=81 Identities=16% Similarity=0.404 Sum_probs=72.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
..++|||+|||+++++++|+++|++||. |.+|.++.+ . +++++|||||+|.+.++|++|++ ++ +.++++.|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~Ai~--~~--~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGS-VKEVKIITD-R-TGVSKGYGFVSFYNDVDVQKIVE--SQ--INFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-T-TSCEEEEEEEEESSCCCHHHHTT--CC--CEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHh--CC--CeECCEEEEE
Confidence 4579999999999999999999999999 999999999 4 89999999999999999999998 44 4788999999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
.++.+...
T Consensus 81 ~~a~~~~~ 88 (102)
T 2xs2_A 81 GPAIRKQN 88 (102)
T ss_dssp EEEEECC-
T ss_pred EECCcCcc
Confidence 88876543
No 330
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.5e-15 Score=110.45 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=69.3
Q ss_pred cccCCeEEEcCCCC-CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 45 ~~~~~~l~v~nl~~-~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
..+.++|||+|||+ ++++++|+++|++||. |.+|.+. +|||||+|.+.++|++|++.|++. .++++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~-v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~ 86 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH-IMQINIK---------NAFGFIQFDNPQSVRDAIEXESQE--MNFGKK 86 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC-EEEEEEC---------SSEEEEEESSHHHHHHHHHHHTTS--EETTEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC-EEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCC--EECCEE
Confidence 44678999999998 9999999999999999 9999883 679999999999999999999985 788999
Q ss_pred CeeecCCCC
Q 019327 124 PTVSWADPR 132 (342)
Q Consensus 124 i~v~~~~~~ 132 (342)
|.|+++.+.
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998765
No 331
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.5e-15 Score=113.82 Aligned_cols=77 Identities=18% Similarity=0.418 Sum_probs=70.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||+ |.+|.++ +|||||+|.+.++|++|++.|++. .++++.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l 95 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGP-MKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGK--SFANQPL 95 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSC-CCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCC--EECCeEE
Confidence 345689999999999999999999999999 9999997 579999999999999999999986 7799999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|.++.+..
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.2e-16 Score=111.89 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=68.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
..+.++|||+|||+++|+++|+++|++||. |....++. +++||||+|.+.++|++|++.|++ .+.++++.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKL-PLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSG-KVELHGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTC-CCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTT-TCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCC-ceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccC-CeeECCEEE
Confidence 345689999999999999999999999998 44433333 368999999999999999999998 137899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.++..
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9999988754
No 333
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=114.62 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=66.1
Q ss_pred cccCCeEEE--cCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCC-CC--
Q 019327 45 AQAKHRLFI--GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF-KL-- 119 (342)
Q Consensus 45 ~~~~~~l~v--~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~-~~-- 119 (342)
..+.++||| +||++++++++|+++|++||+ |.+|.|+.+ ++||||+|.+.++|++|++.||+..+ ..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~-v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL-VDALLMPPN-------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSC-EEEEECCTT-------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCC-eEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 345788999 779999999999999999998 999887543 78999999999999999999999743 11
Q ss_pred CCCCCeeecCCCC
Q 019327 120 DDNAPTVSWADPR 132 (342)
Q Consensus 120 ~~~~i~v~~~~~~ 132 (342)
.++.+.|.++...
T Consensus 94 ~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKITLYLNFVEKV 106 (114)
T ss_dssp CEEECEEEEESCC
T ss_pred CCcEEEEEecccC
Confidence 4566777666544
No 334
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.3e-15 Score=115.15 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=70.6
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEec
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 219 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 219 (342)
...++|||+|| ++++++|+++|++||.|.+|.|.. +++||||+|++.++|++|++.||+..|.|+.|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999996 699999999999999999999963 3899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019327 220 KPQADQ 225 (342)
Q Consensus 220 ~~~~~~ 225 (342)
+++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 877543
No 335
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=4.3e-16 Score=118.87 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=72.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCC--eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPG--VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 123 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~--v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 123 (342)
...++|||+|||+++|+++|+++|+.||.. |.+|+|+.+ . .++++|||||+|.+.++|++|++ +++. .++++.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~-~g~~~G~afV~F~~~~~a~~Al~-~~g~--~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-R-EGRQSGEAFVELESEDDVKLALK-KDRE--SMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-S-SSCEEEEEEEEBSSHHHHHHHGG-GTTE--EETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-C-CCCCCeEEEEEECCHHHHHHHHh-cCCC--eECCeE
Confidence 456789999999999999999999999962 689999998 3 49999999999999999999999 8874 789999
Q ss_pred CeeecCCCC
Q 019327 124 PTVSWADPR 132 (342)
Q Consensus 124 i~v~~~~~~ 132 (342)
|.|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999887543
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=112.07 Aligned_cols=79 Identities=25% Similarity=0.417 Sum_probs=69.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCC---CCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG---QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 217 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 217 (342)
..++|||+|||+++++++|+++|++||.|. +.++.+..+ +.+++||||+|++.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 458999999999999999999999999999 888888776 5779999999999999999999984 4788888777
Q ss_pred eccCC
Q 019327 218 LAKPQ 222 (342)
Q Consensus 218 ~a~~~ 222 (342)
.+.+.
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 65543
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=2.2e-15 Score=114.32 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=64.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCC--
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA-- 123 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~-- 123 (342)
...++|||+|||+++|+++|+++|++||+ |++|.|+.+ +||||+|.+.++|++|++.|++. .++++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD-VCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC-EEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTC--BCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCC--EECCcEee
Confidence 34689999999999999999999999999 999999764 89999999999999999999986 788988
Q ss_pred ---CeeecCCCC
Q 019327 124 ---PTVSWADPR 132 (342)
Q Consensus 124 ---i~v~~~~~~ 132 (342)
|+|..+.+.
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 566555543
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=109.34 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=70.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEE-EeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE-LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
...++|||+|||+++++++|+++|++||+ |.+|+ ++.+ ..+ +.|||+|.+.++|++|++.|++. .++++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~i~~~-~~~----~~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l 84 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGV-VESCEQVNTD-SET----AVVNVTYSSKDQARQALDKLNGF--QLENFTL 84 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSC-EEEEEEECCS-SSS----EEEEEEESSHHHHHHHHHHHTTC--BCSSCBC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCC-eEEEEEeecC-CCC----CEEEEEECCHHHHHHHHHHhCCC--EECCcEE
Confidence 45689999999999999999999999999 99994 7776 222 34999999999999999999986 7899999
Q ss_pred eeecCCCCC
Q 019327 125 TVSWADPRN 133 (342)
Q Consensus 125 ~v~~~~~~~ 133 (342)
.|+++.++.
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998873
No 339
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=115.38 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=72.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCC--eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPG--VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~--v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
....++|||+|||+++|+++|+++|+.||.. |.+|.|+.+ .. ++++|||||+|.+.++|++|++ +++. .++++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~~~~--~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RD-GKRRGDALIEMESEQDVQKALE-KHRM--YMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC-TT-STTCSEEEEEBSSHHHHHHHHT-TTTC--CSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC-CC-CCEeeEEEEEECCHHHHHHHHH-hCcc--eeCCe
Confidence 3456899999999999999999999997741 688999998 34 9999999999999999999999 8875 78999
Q ss_pred CCeeecCCCC
Q 019327 123 APTVSWADPR 132 (342)
Q Consensus 123 ~i~v~~~~~~ 132 (342)
.|.|.++.+.
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999988754
No 340
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=108.66 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=68.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
+...++|||+|||+++|+++|+++|++||+ |.+| +.+ ..+++ ||||+|.+.++|++|++ |++. .++++.|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~v--~~~-~~~g~---~afV~f~~~~~a~~ai~-l~g~--~~~g~~l 74 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGP-VASV--VMD-KDKGV---FAIVEMGDVGAREAVLS-QSQH--SLGGHRL 74 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSC-EEEE--EEC-SSSCC---EEEEEESSHHHHHHHHT-CSCC--EETTEEC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCC-eEEE--EEc-CCCCc---EEEEEECCHHHHHHHHh-cCCe--EECCEEE
Confidence 345679999999999999999999999999 9987 444 23444 99999999999999999 9885 8899999
Q ss_pred eeecCCCCCc
Q 019327 125 TVSWADPRNA 134 (342)
Q Consensus 125 ~v~~~~~~~~ 134 (342)
.|+++.+...
T Consensus 75 ~V~~a~~~~~ 84 (94)
T 2e5g_A 75 RVRPREQKEF 84 (94)
T ss_dssp CCBCSCCSCC
T ss_pred EEEECCcCCC
Confidence 9998876654
No 341
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.1e-15 Score=109.75 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=69.6
Q ss_pred ecccCCeEEEcCCCC-CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 44 AAQAKHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~-~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
...+.++|||+|||+ ++++++|+++|++||+ |.+|.+. ++||||+|.+.++|++|++.|++. .+.++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 73 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH-IMQINIK---------NAFGFIQFDNPQSVRDAIECESQE--MNFGK 73 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCC-CCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCS--SCBTT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC-EEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCC--eeCCc
Confidence 345678999999998 9999999999999999 9999984 579999999999999999999986 78899
Q ss_pred CCeeecCCCCCc
Q 019327 123 APTVSWADPRNA 134 (342)
Q Consensus 123 ~i~v~~~~~~~~ 134 (342)
.|.|.++.+...
T Consensus 74 ~l~V~~a~~~~~ 85 (96)
T 2kvi_A 74 KLILEVSSSNAR 85 (96)
T ss_dssp TBCEEEEECCCC
T ss_pred EEEEEEcCcCCC
Confidence 999999876643
No 342
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=109.21 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=70.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhh--CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKI--GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~--G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
..+.++|||+|||+++|+++|+++|++| |. |.+|++. ++||||+|.+.++|++|++.|++. .++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~-v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 79 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA-VERVKKI---------RDYAFVHFSNREDAVEAMKALNGK--VLDGS 79 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC-EEEEEEC---------SSEEEEEESSHHHHHHHHHHHSSE--EETTE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc-eEEEEEe---------CCeEEEEeCCHHHHHHHHHHhCCC--EeCCc
Confidence 3456899999999999999999999999 88 9988774 469999999999999999999986 78899
Q ss_pred CCeeecCCCCCc
Q 019327 123 APTVSWADPRNA 134 (342)
Q Consensus 123 ~i~v~~~~~~~~ 134 (342)
.|.|.++.+...
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988754
No 343
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.5e-15 Score=123.09 Aligned_cols=108 Identities=15% Similarity=0.242 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHh--CCCccCCeEEEEeec--c-------------cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEE
Q 019327 19 TKELASQAIEEL--NSCELKGKKIKCSAA--Q-------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 81 (342)
Q Consensus 19 ~~e~A~~a~~~~--~g~~~~g~~i~v~~~--~-------------~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~ 81 (342)
+.+....|++.. ....+......|... . ..++|||+|||+++|+++|+++|++||+ |.+|.|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQ-VLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCC-EEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCC-EEEEEE
Confidence 567777777765 344555443344322 1 2378999999999999999999999999 999999
Q ss_pred eeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 019327 82 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 82 ~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~~ 132 (342)
+++ .++.++|||||+|.+.++|++|++.++. .++|+.|.|.|....
T Consensus 142 ~~~--~~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRT--LHKAFKGSIFVVFDSIESAKKFVETPGQ---KYKETDLLILFKDDY 187 (193)
T ss_dssp EEC--TTCCEEEEEEEEESSHHHHHHHHHCTTC---EETTEECEEEETTTC
T ss_pred EEC--CCCCcccEEEEEECCHHHHHHHHHhCCC---eECCEEEEEEEhHHH
Confidence 998 4588999999999999999999987653 789999999987654
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=3.8e-15 Score=107.13 Aligned_cols=73 Identities=21% Similarity=0.430 Sum_probs=66.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhh----C-------CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKI----G-------PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~----G-------~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
+++.++|||+|||+++++++|+++|++| | + |.++++.++ ++||||+|.+.++|++|+ .|+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~-v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP-VLAVQINQD-------KNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCS-EEEEEECSS-------SSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCc-ceEEEecCC-------CcEEEEEcCCHHHHHHHH-hcC
Confidence 4567899999999999999999999999 8 7 999998765 799999999999999999 999
Q ss_pred CCCCCCCCCCCeeec
Q 019327 114 NPKFKLDDNAPTVSW 128 (342)
Q Consensus 114 ~~~~~~~~~~i~v~~ 128 (342)
+. .++++.|.|++
T Consensus 74 g~--~~~g~~l~V~r 86 (87)
T 2hzc_A 74 GI--IFQGQSLKIRR 86 (87)
T ss_dssp TC--EETTEECEEEC
T ss_pred CC--EECCeEEEEeC
Confidence 85 78899998874
No 345
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=2.8e-15 Score=112.92 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCee
Q 019327 48 KHRLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 126 (342)
Q Consensus 48 ~~~l~v~nl~~~-~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v 126 (342)
.++|||+|||++ +++++|+++|++||+ |.+|.+ +++||||+|.+.++|++|++.|++. .++++.|.|
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V 94 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGR-VAGCSV---------HKGYAFVQYSNERHARAAVLGENGR--VLAGQTLDI 94 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSC-CSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTC--EETTEECCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCC-eEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEE
Confidence 479999999999 999999999999999 999988 3689999999999999999999985 789999999
Q ss_pred ecCCCCC
Q 019327 127 SWADPRN 133 (342)
Q Consensus 127 ~~~~~~~ 133 (342)
+++.+..
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9997554
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=114.21 Aligned_cols=78 Identities=14% Similarity=0.375 Sum_probs=66.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCC---CCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA---NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
...++|||+|||+++|+++|+++|++||+ |. +.++.+ ..+ ++++|||||+|.+.++|++|++.|+ .++++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~-~~~~~~-~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~----~~~G~ 78 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGP-LV-VDWPHK-AESKSYFPPKGYAFLLFQEESSVQALIDACL----EEDGK 78 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCC-CC-EECTTS-SSSCCCSCTTSEEEECCSSHHHHHHHHHHSE----EETTE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC-EE-EEEeec-CCCCCCCCcccEEEEEECCHHHHHHHHHhhh----hcCCc
Confidence 45789999999999999999999999999 88 888777 344 7999999999999999999999984 36777
Q ss_pred CCeeecCC
Q 019327 123 APTVSWAD 130 (342)
Q Consensus 123 ~i~v~~~~ 130 (342)
.+.+..+.
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 77776544
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=4.2e-15 Score=113.80 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceE-EEEEecCHHHHHHHHHHhCCCCCCCCC--CCCe
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF-AFIEYYNHACAEYSRQKMSNPKFKLDD--NAPT 125 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~~~~~~~~~--~~i~ 125 (342)
-+|||+||++.+|+++|+++|++||+ |.+|+++.+ +++| |||+|.+.++|++|++.|++. .+.+ +.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~-V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~LnG~--~i~g~~~~Lr 99 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGT-VLKIITFTK------NNQFQALLQYADPVSAQHAKLSLDGQ--NIYNACCTLR 99 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSC-EEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHHTTC--EEETTEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCC-EEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHcCCC--eecCCCcEEE
Confidence 36889999999999999999999999 999998765 2577 999999999999999999997 5555 8899
Q ss_pred eecCCCCCcc
Q 019327 126 VSWADPRNAE 135 (342)
Q Consensus 126 v~~~~~~~~~ 135 (342)
|+|+.+....
T Consensus 100 I~~ak~~~l~ 109 (130)
T 3zzy_A 100 IDFSKLTSLN 109 (130)
T ss_dssp EEECSCSSCC
T ss_pred EEecCCCcee
Confidence 9999887543
No 348
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=1.3e-15 Score=109.81 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=70.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++++++|+++|++| + |.+|++. +++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~-v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~ 71 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-D-LKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQY--SFRGKDLI 71 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-C-CCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTE--EETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-C-eEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCC--eECCcEEE
Confidence 457899999999999999999999999 7 9999884 45899999999999999999999985 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|+++....
T Consensus 72 V~~a~~~~ 79 (88)
T 1wg1_A 72 VQLQPTDA 79 (88)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 99987664
No 349
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.5e-15 Score=114.20 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=68.9
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecC----HHH----HHHHHH--HhCC
Q 019327 49 HRLFIGNV----PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN----HAC----AEYSRQ--KMSN 114 (342)
Q Consensus 49 ~~l~v~nl----~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~----~~~----a~~a~~--~l~~ 114 (342)
++|||+|| |+.+++++|+++|++||+ |.+|.++.| ..+++++|||||+|.+ +++ |.+|++ .+++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGe-V~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGE-ISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSC-CSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 68999999 999999999999999999 999999999 6999999999999996 433 788888 5666
Q ss_pred CCCCCCCCCCeeecCCCC
Q 019327 115 PKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 115 ~~~~~~~~~i~v~~~~~~ 132 (342)
..++++.|+|......
T Consensus 81 --~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 81 --CFIMGFKFEVILNKHS 96 (136)
T ss_dssp --EEETTEEEEEEECCTT
T ss_pred --CeecCcEEEEEECccc
Confidence 4899999999865543
No 350
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-15 Score=112.19 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=70.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|||+++++++|+++|++||. |..+ . .++.++|||||+|.+.++|++|++.|++. .++++.|.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~-v~~~---~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALE-IRLV---S---QDGKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEE-ECCE---E---ETTEEEEEEEEEESSHHHHHHHHHHTTEE--EETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCc-EEEe---C---CCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 45689999999999999999999999998 7665 2 36788999999999999999999999985 78999999
Q ss_pred eecCCCCC
Q 019327 126 VSWADPRN 133 (342)
Q Consensus 126 v~~~~~~~ 133 (342)
|.++.++.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99998764
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.8e-14 Score=109.82 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceE-EEEEecCHHHHHHHHHHhCCCCCCCCC--CCCee
Q 019327 50 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF-AFIEYYNHACAEYSRQKMSNPKFKLDD--NAPTV 126 (342)
Q Consensus 50 ~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~~~~~~~~~--~~i~v 126 (342)
.|||+||++.+|+++|+++|++||+ |.+|+|+.. .|| |||+|.+.++|++|++.|++. .+.+ +.|+|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~-V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~--~i~g~~~~l~V 96 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGK-VQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGA--DIYAGCCTLKI 96 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSC-EEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTC--CCBTTBSEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCC-EEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCC--EecCCCeEEEE
Confidence 4679999999999999999999999 999999653 276 999999999999999999997 5555 68999
Q ss_pred ecCCCCCc
Q 019327 127 SWADPRNA 134 (342)
Q Consensus 127 ~~~~~~~~ 134 (342)
+++.+...
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99987753
No 352
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.7e-15 Score=107.30 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=69.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|| ++|+++|+++|++||+ |.+|.|.+ +++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~-i~~v~i~~-------~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~ 80 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGN-IIDLSMDP-------PRNCAFVTYEKMESADQAVAELNGT--QVESVQLK 80 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSC-EEEEEEET-------TTTEEEEEESSHHHHHHHHHHTTTE--EETTEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCC-EEEEEecC-------CCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEE
Confidence 35689999996 8999999999999999 99999853 4789999999999999999999985 78999999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|.|+.+...
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999987754
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=118.34 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=72.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEE--------EEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCC
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI--------ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 116 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v--------~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 116 (342)
..+.++|||+|||+++|+++|+++|++||. |..| .+. .++.++|||||+|.+.++|.+|++.|++.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~~~~di~~~----~~g~~~g~afV~f~~~~~A~~Ai~~lng~- 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVD-FSSETQRIMFDIRLM----KEGRMKGQAFIGLPNEKAAAKALKEANGY- 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCC-TTCHHHHHHCEEEEE----EETTTEEEEEEECSSHHHHHHHHHHHTTB-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-cccccccceeeEEec----cCCCcccEEEEEeCCHHHHHHHHHHhCCC-
Confidence 556789999999999999999999999998 8764 332 36789999999999999999999999985
Q ss_pred CCCCCCCCeeecCCCCCc
Q 019327 117 FKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 117 ~~~~~~~i~v~~~~~~~~ 134 (342)
.++++.|.|.++.+...
T Consensus 116 -~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 116 -VLFGKPMVVQFARSARP 132 (143)
T ss_dssp -EETTEECEEEECCCSCC
T ss_pred -EeCCcEEEEEECCCCCC
Confidence 78999999999987643
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-15 Score=107.84 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=68.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
...++|||+|||+++|+++|+++|++||+ |.+|+++++ ++|||||+|.+.++|++| ++..+.+.++.|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGD-VMDVFIPKP------FRAFAFVTFADDQIAQSL----CGEDLIIKGISVH 71 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSC-CCEEECCSS------CCSCCEEECSCHHHHHHT----TTCEEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCC-eeEEEEecC------CCCEEEEEECCHHHHHHH----hcCCceeCCEEEE
Confidence 45789999999999999999999999999 999999765 689999999999999754 4445677899999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|.++.++..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999987754
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=2.5e-14 Score=106.25 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=73.1
Q ss_pred cccCCeEEEcCCCC-----CCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCC
Q 019327 45 AQAKHRLFIGNVPR-----NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 119 (342)
Q Consensus 45 ~~~~~~l~v~nl~~-----~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 119 (342)
..+.++|+|.||.. +-++++|+++|++||+ |.+|.|++++..+++++||+||+|.+.++|++|++.|+++ .+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~-V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~--~~ 81 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGK-VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR--YF 81 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSC-EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC--EE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCC-EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC--EE
Confidence 34678999999962 2378999999999999 9999999984345789999999999999999999999997 78
Q ss_pred CCCCCeeecCCCC
Q 019327 120 DDNAPTVSWADPR 132 (342)
Q Consensus 120 ~~~~i~v~~~~~~ 132 (342)
+++.|.|.++...
T Consensus 82 ~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 82 GGRVVKACFYNLD 94 (105)
T ss_dssp TTEECEEEECCHH
T ss_pred CCcEEEEEEcCHH
Confidence 9999999998653
No 356
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-14 Score=100.97 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=65.3
Q ss_pred cCCe-EEEcCCCCCCCHHH----HHHHHHhhC-CCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 47 AKHR-LFIGNVPRNWGEDD----MRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 47 ~~~~-l~v~nl~~~~te~~----l~~~f~~~G-~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
++.+ |||+|||+++++++ |+++|++|| + |.+| ++ |+|||+|.+.++|++|++.|++. .+.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~-Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~--~l~ 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK-VLSI--------TG---CSAILRFINQDSAERAQKRMENE--DVF 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC-EEEC--------CT---TCEEEEESSHHHHHHHHHHHTTC--CSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe-eEEE--------ec---CEEEEEECCHHHHHHHHHHhcCC--ccC
Confidence 4555 99999999999988 558999995 8 8877 12 89999999999999999999996 889
Q ss_pred CCCCeeecCCCCCcc
Q 019327 121 DNAPTVSWADPRNAE 135 (342)
Q Consensus 121 ~~~i~v~~~~~~~~~ 135 (342)
+++|+|+++......
T Consensus 73 gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 73 GNRIIVSFTPKNREL 87 (96)
T ss_dssp SSCCEEESSCCSCCC
T ss_pred CceEEEEecCCCcce
Confidence 999999999887653
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.6e-14 Score=105.62 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=70.6
Q ss_pred ccCceEEEEecCCCCCC-----------HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCc
Q 019327 139 ASQVKALYVKNLPKDIT-----------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 207 (342)
Q Consensus 139 ~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~ 207 (342)
...+++|+|.||....+ +++|+++|++||.|.+|.| .++. ++|||||+|.+.++|++|++.||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34569999999954432 5899999999999999976 4432 5899999999999999999999999
Q ss_pred eeCCcEEEEEeccCCCCC
Q 019327 208 EIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 208 ~~~g~~i~v~~a~~~~~~ 225 (342)
.|+|+.|+|.++.++...
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999999886543
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=3e-14 Score=105.94 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=71.1
Q ss_pred CceEEEEecC--CCCCC--------HHHHHHHHhcCCcEEEEEecCCCCCC--CCCceEEEEeCCHHHHHHHHHhcCCce
Q 019327 141 QVKALYVKNL--PKDIT--------QDRLKELFAHHGKITKVVIPPAKPGQ--ERSRYGFVHFAERSSAMKALKNTEKYE 208 (342)
Q Consensus 141 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~--~~~g~~fV~f~~~~~a~~a~~~l~~~~ 208 (342)
++++|.|.|+ +.++. +++|++.|++||.|++|.|++++.+. .++|++||+|++.++|++|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4688999998 33343 36899999999999999999987653 468999999999999999999999999
Q ss_pred eCCcEEEEEeccCC
Q 019327 209 IDGQVLDCSLAKPQ 222 (342)
Q Consensus 209 ~~g~~i~v~~a~~~ 222 (342)
++||.|+|+++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.3e-14 Score=121.62 Aligned_cols=82 Identities=22% Similarity=0.466 Sum_probs=70.6
Q ss_pred cccCCeEEEcCCCCCC---------CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 45 AQAKHRLFIGNVPRNW---------GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~---------te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
....++|||+||+.++ +|++|+++|++||+ |++|+|+.+ +|||||+|.+.++|+.|++.|++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~-I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD-IDRIRYVES-------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC-EEEEEEEGG-------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC-EEEEEEECC-------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 3457899999999998 79999999999999 999999875 799999999999999999999998
Q ss_pred CCCC----------CCCCCeeecCCCCCc
Q 019327 116 KFKL----------DDNAPTVSWADPRNA 134 (342)
Q Consensus 116 ~~~~----------~~~~i~v~~~~~~~~ 134 (342)
.+.+ .++.|.|.|+.....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 5422 899999999987643
No 360
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=3.2e-14 Score=108.73 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=69.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCe
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 125 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~ 125 (342)
.+.++|||+|| ++|+++|+++|++||+ |.+|.+.. +++||||+|.+.++|++|++.|++. .++++.|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~-I~~v~i~~-------~kg~aFV~f~~~~~A~~Ai~~lng~--~~~g~~l~ 104 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGN-IIDLSMDP-------PRNCAFVTYEKMESADQAVAELNGT--QVESVQLK 104 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCC-CSCEEEET-------TTTEEEEECSSHHHHHHHHHHHTTC--BCSSCBCE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCC-EEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 45689999996 6999999999999999 99999863 4789999999999999999999986 78999999
Q ss_pred eecCCCCCc
Q 019327 126 VSWADPRNA 134 (342)
Q Consensus 126 v~~~~~~~~ 134 (342)
|.|+.+...
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999987754
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.1e-13 Score=104.86 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=70.3
Q ss_pred CceEEEEecCCC--CC---CHHHHHHHHhcCCcEEEEEecCCCCC----CCCCceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 141 QVKALYVKNLPK--DI---TQDRLKELFAHHGKITKVVIPPAKPG----QERSRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 141 ~~~~l~v~~l~~--~~---~~~~l~~~f~~~G~i~~v~i~~~~~~----~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
.+++|+|.|+-. ++ .+++|++.|++||.|.+|.|++++.+ ..++|++||+|.+.++|.+|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468999999832 22 36899999999999999999988653 3457999999999999999999999999999
Q ss_pred cEEEEEeccC
Q 019327 212 QVLDCSLAKP 221 (342)
Q Consensus 212 ~~i~v~~a~~ 221 (342)
+.|+|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=3.6e-14 Score=105.35 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=62.3
Q ss_pred EecCCCCCCHHHHHHHH------------hcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEE
Q 019327 147 VKNLPKDITQDRLKELF------------AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 214 (342)
Q Consensus 147 v~~l~~~~~~~~l~~~f------------~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 214 (342)
+.+|++.+++++|++.| ++||.|++|.|+++.. ..++|||||+|.+.++|++|++.||+..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777666555 9999999999998876 4569999999999999999999999999999999
Q ss_pred EEEec
Q 019327 215 DCSLA 219 (342)
Q Consensus 215 ~v~~a 219 (342)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-12 Score=94.60 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccCCCCC
Q 019327 152 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 225 (342)
Q Consensus 152 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 225 (342)
..+++++|+++|++||.|.+|.|+. .++|||||+|++.++|++|++.+++ +.++.|+|+|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5789999999999999999999983 3489999999999999999998554 68999999999877643
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.8e-13 Score=101.55 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHH------------HhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019327 53 IGNVPRNWGEDDMRKAV------------TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 120 (342)
Q Consensus 53 v~nl~~~~te~~l~~~f------------~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 120 (342)
+.+|++.+++++|+++| ++||+ |.+|.|+++ ..++++|||||+|.+.++|++|++.|++. .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~-V~~v~i~~~--~~~~~~G~~fV~f~~~~~A~~A~~~lng~--~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGE-VEEMNVCDN--LGDHLVGNVYVKFRREEDAEKAVIDLNNR--WFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEECCS--SSSSSEEEEEEEESCHHHHHHHHHHHTTC--EET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCc-eEEEEEEeC--CCCCccEEEEEEECCHHHHHHHHHHHCCC--EEC
Confidence 56777778888777666 99999 999999988 35789999999999999999999999997 789
Q ss_pred CCCCeeecC
Q 019327 121 DNAPTVSWA 129 (342)
Q Consensus 121 ~~~i~v~~~ 129 (342)
++.|.|.++
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999876
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=1.5e-12 Score=116.43 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=66.3
Q ss_pred ccCceEEEEec--CCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC---Cc-
Q 019327 139 ASQVKALYVKN--LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID---GQ- 212 (342)
Q Consensus 139 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~---g~- 212 (342)
..++++|||+| |+..+|+++|+++|++||+|++|.+... |+||||+|++.++|++|++.||+..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT------CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34468999999 5789999999999999999999988653 899999999999999999999999873 34
Q ss_pred -EEEEEecc
Q 019327 213 -VLDCSLAK 220 (342)
Q Consensus 213 -~i~v~~a~ 220 (342)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888885
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=98.26 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=69.4
Q ss_pred ecccCCeEEEcCCCCCCC-----------HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 019327 44 AAQAKHRLFIGNVPRNWG-----------EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112 (342)
Q Consensus 44 ~~~~~~~l~v~nl~~~~t-----------e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 112 (342)
...+.++|+|.||....+ +++|+++|++||+ |.+|.| .+ . .++|||||+|.+.++|++|++.|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~-v~~v~i-~~-~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQ-IRKLLL-FD-R---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSC-CSEEEE-ET-T---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCC-EeEEEE-ec-C---CCCEEEEEEECCHHHHHHHHHHc
Confidence 345678999999944332 6899999999999 999965 55 1 37999999999999999999999
Q ss_pred CCCCCCCCCCCCeeecCCCCCc
Q 019327 113 SNPKFKLDDNAPTVSWADPRNA 134 (342)
Q Consensus 113 ~~~~~~~~~~~i~v~~~~~~~~ 134 (342)
++. .++++.|.|.++.+...
T Consensus 85 ng~--~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 85 DGR--WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTC--EETTEECEEEECCSCCC
T ss_pred CCC--EECCcEEEEEEeCCCCC
Confidence 996 77899999999987643
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.2e-12 Score=96.08 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=66.8
Q ss_pred CceEEEEecCCCCCC----------HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeC
Q 019327 141 QVKALYVKNLPKDIT----------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 210 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~ 210 (342)
.+++|.|.|+=.... +++|++.|++||.|++|.|.++. ++|++||+|.+.++|++|++.||+..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 468899999833211 36899999999999999998764 3899999999999999999999999999
Q ss_pred CcEEEEEeccCC
Q 019327 211 GQVLDCSLAKPQ 222 (342)
Q Consensus 211 g~~i~v~~a~~~ 222 (342)
|+.|+|+++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998643
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.8e-12 Score=91.60 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=65.0
Q ss_pred eEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCC
Q 019327 38 KKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117 (342)
Q Consensus 38 ~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 117 (342)
..|+|.|..... .....++++++|+++|++||+ |.+|.|+. +++|||||+|.+.++|++|++.++
T Consensus 11 ~~~~v~w~~~~~----~~~~~~~te~~L~~~F~~~G~-V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~~~---- 75 (100)
T 2d9o_A 11 PKLKLKWKCKKE----DESKGGYSKDVLLRLLQKYGE-VLNLVLSS------KKPGTAVVEFATVKAAELAVQNEV---- 75 (100)
T ss_dssp CEEEEECCCCSS----CSCCCSCCHHHHHHHHHTTSC-EEEEEEES------SSSSEEEEEESCHHHHHHHHHTCC----
T ss_pred ceEEEeeeccCc----cCcCCCCCHHHHHHHHHhcCC-EEEEEEcc------CCCCEEEEEECCHHHHHHHHHhcC----
Confidence 466776644221 011357999999999999999 99999973 478999999999999999999854
Q ss_pred CCCCCCCeeecCCCCCc
Q 019327 118 KLDDNAPTVSWADPRNA 134 (342)
Q Consensus 118 ~~~~~~i~v~~~~~~~~ 134 (342)
.+.++.|.|+|+.+...
T Consensus 76 ~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 76 GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp BCSSSBCEEECSSCCCC
T ss_pred CCCCCeEEEEEccCCCC
Confidence 45789999999887653
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1e-12 Score=97.51 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=69.6
Q ss_pred ccCCeEEEcCC--CCCCC--------HHHHHHHHHhhCCCeEEEEEeeCCCCC--CCCceEEEEEecCHHHHHHHHHHhC
Q 019327 46 QAKHRLFIGNV--PRNWG--------EDDMRKAVTKIGPGVISIELVKDPQNA--NQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 46 ~~~~~l~v~nl--~~~~t--------e~~l~~~f~~~G~~v~~v~~~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
.+.+.|.|.|+ +.++. +++|++.|++||+ |++|.|+++ ..+ ++++|++||+|.+.++|++|++.||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~-V~~v~i~~~-~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGL-VKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSC-EEEEECCCC-BTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCC-EEEEEEecc-CCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 35778999998 33443 3799999999999 999999987 332 4689999999999999999999999
Q ss_pred CCCCCCCCCCCeeecCCCC
Q 019327 114 NPKFKLDDNAPTVSWADPR 132 (342)
Q Consensus 114 ~~~~~~~~~~i~v~~~~~~ 132 (342)
++ .++++.|.|.+....
T Consensus 81 G~--~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 81 GR--KFANRVVVTKYCDPD 97 (105)
T ss_dssp TC--EETTEECEEEEECHH
T ss_pred CC--EeCCCEEEEEEeCHH
Confidence 97 789999999987643
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.2e-12 Score=114.21 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=78.3
Q ss_pred cccCCeEEEcC--CCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC-CCC
Q 019327 45 AQAKHRLFIGN--VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDD 121 (342)
Q Consensus 45 ~~~~~~l~v~n--l~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~-~~~ 121 (342)
+.+.++|||+| |+..+||++|+++|++||+ |.+|.+.. +||||||+|.+.++|++|++.||+..+. ..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~-V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL-VDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC-EEEEECCT-------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC-eEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 56788999999 5789999999999999999 99887643 4799999999999999999999998552 224
Q ss_pred C--CCeeecCCCCCccc--ccccCceEEEEecCCCCCCHHHHHHHHhcC
Q 019327 122 N--APTVSWADPRNAES--SAASQVKALYVKNLPKDITQDRLKELFAHH 166 (342)
Q Consensus 122 ~--~i~v~~~~~~~~~~--~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 166 (342)
+ .+.+.+........ ......- |+ -+|..+++++-..+.+..
T Consensus 87 ~~~~ly~~~~~~~~~~~~~~~~lp~G-l~--~~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 87 QKITLYLNFVEKVQWKELRPQALPPG-LM--VVEEIISSEEEKMLLESV 132 (345)
T ss_dssp CEEECEEEECSSEEEEEEECCSCCTT-EE--EETTCSCHHHHHHHHTTC
T ss_pred CceEEEEEEeecccccccccccCCCc-eE--EEcCcCCHHHHHHHHHhc
Confidence 4 46666664322111 0011111 22 246667776666666553
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=3.3e-12 Score=96.67 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred ccCCeEEEcCCC--CCC---CHHHHHHHHHhhCCCeEEEEEeeCCC---CCCCCceEEEEEecCHHHHHHHHHHhCCCCC
Q 019327 46 QAKHRLFIGNVP--RNW---GEDDMRKAVTKIGPGVISIELVKDPQ---NANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117 (342)
Q Consensus 46 ~~~~~l~v~nl~--~~~---te~~l~~~f~~~G~~v~~v~~~~~~~---~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 117 (342)
.+.++|+|.|+- .++ .++||++.|++||+ |.+|+|++++. .+++++|++||+|.+.++|.+|++.||++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-- 94 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-- 94 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC--
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC--
Confidence 367889999983 222 37899999999999 99999998832 14567899999999999999999999997
Q ss_pred CCCCCCCeeecCCC
Q 019327 118 KLDDNAPTVSWADP 131 (342)
Q Consensus 118 ~~~~~~i~v~~~~~ 131 (342)
.++++.|.|.+...
T Consensus 95 ~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 95 WFAGRKVVAEVYDQ 108 (118)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCcEEEEEEcCh
Confidence 78999999988754
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=8.6e-11 Score=82.68 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=61.6
Q ss_pred ceEEEEecCCC----CCCH----HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcE
Q 019327 142 VKALYVKNLPK----DITQ----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 213 (342)
Q Consensus 142 ~~~l~v~~l~~----~~~~----~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 213 (342)
.-+|+|.-++. ++.+ .+|.+.|++||+|..++|..++ +||+|.+.++|.+||+ ||+..+.||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 36777777662 3434 6789999999999999999873 8999999999999998 9999999999
Q ss_pred EEEEeccCC
Q 019327 214 LDCSLAKPQ 222 (342)
Q Consensus 214 i~v~~a~~~ 222 (342)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999864
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.4e-10 Score=87.16 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=67.4
Q ss_pred cCceEEEEecCCCC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCC-HHHHHHHHHhcC--CceeCCcEEE
Q 019327 140 SQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE-RSSAMKALKNTE--KYEIDGQVLD 215 (342)
Q Consensus 140 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~-~~~a~~a~~~l~--~~~~~g~~i~ 215 (342)
.....|+|+||+++ +++++|+++|++||+|..|.+..+. -.|||+|.+ .++|+.|+++|| +..|++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34589999999999 9999999999999999999999984 479999999 899999999995 6789999998
Q ss_pred EEecc
Q 019327 216 CSLAK 220 (342)
Q Consensus 216 v~~a~ 220 (342)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88765
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=1.3e-10 Score=87.23 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=64.5
Q ss_pred ccCCeEEEcCCCCCC----------CHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 46 QAKHRLFIGNVPRNW----------GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~----------te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
.+.+.|.|.|+=... .++||++.|++||. |++|.|.++ .++|++||+|.+.++|++|++.||++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~-V~~v~i~~~-----~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGG-VIHIYVDKN-----SAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTC-CSEEEECTT-----CTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCC-EEEEEEecC-----CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356678888873211 24588999999999 999999766 25899999999999999999999997
Q ss_pred CCCCCCCCCeeecCCCC
Q 019327 116 KFKLDDNAPTVSWADPR 132 (342)
Q Consensus 116 ~~~~~~~~i~v~~~~~~ 132 (342)
.++|+.|.|.++...
T Consensus 79 --~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 79 --WFAGKMITAAYVPLP 93 (114)
T ss_dssp --EETTEECEEEEECHH
T ss_pred --EECCEEEEEEEEcHH
Confidence 789999999987543
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.4e-10 Score=85.91 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred cCCeEEEcCCCCC-CCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecC-HHHHHHHHHHhCCCCCCCCCCCC
Q 019327 47 AKHRLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-HACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 47 ~~~~l~v~nl~~~-~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~-~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
+.+.|+|+||+++ +++++|+++|++||+ |..|.++++. -.|||+|.+ .++|..|++.++...+.|++..+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~-V~~Vd~~~g~-------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGE-IKWIDFVRGA-------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCC-EEEEECCTTC-------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCC-EEEEEEecCC-------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 3578999999999 999999999999999 9999998882 259999999 89999999999877788888777
Q ss_pred eeecCC
Q 019327 125 TVSWAD 130 (342)
Q Consensus 125 ~v~~~~ 130 (342)
.++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776443
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=7.1e-10 Score=78.35 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=61.5
Q ss_pred CceEEEEecCCCC-----CCH----HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC
Q 019327 141 QVKALYVKNLPKD-----ITQ----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 211 (342)
Q Consensus 141 ~~~~l~v~~l~~~-----~~~----~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 211 (342)
+..||+|.-++++ +.+ .+|.+.|++||+|..++|..++ +||+|.+.++|.+||+ ||+..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3478889888643 333 5688999999999999999873 9999999999999999 99999999
Q ss_pred cEEEEEeccC
Q 019327 212 QVLDCSLAKP 221 (342)
Q Consensus 212 ~~i~v~~a~~ 221 (342)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998653
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=75.48 Aligned_cols=73 Identities=16% Similarity=0.309 Sum_probs=61.0
Q ss_pred cCCeEEEcCCC----CCCCH----HHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCC
Q 019327 47 AKHRLFIGNVP----RNWGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 118 (342)
Q Consensus 47 ~~~~l~v~nl~----~~~te----~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 118 (342)
+..+|+|..++ .++-+ .+|.+.|++||+ |..++++.+ .+||+|.+.++|.+|++ |++. .
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~-Vi~vr~~~d---------~~fVtF~d~~sAlaAi~-mnG~--~ 72 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGE-VILIRFVED---------KMWVTFLEGSSALNVLS-LNGK--E 72 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCC-EEEEEECSS---------SEEEEESSHHHHHHGGG-GTTC--E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCC-eEEEEEecC---------CEEEEECChHHHHHHHh-cCCe--E
Confidence 34577777665 23444 678999999998 999999988 28999999999999998 9986 8
Q ss_pred CCCCCCeeecCCCC
Q 019327 119 LDDNAPTVSWADPR 132 (342)
Q Consensus 119 ~~~~~i~v~~~~~~ 132 (342)
++++.|+|+.+.+.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999988765
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=4.9e-09 Score=88.75 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHhcCCcEEEEEecCCCC----CCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEeccC
Q 019327 153 DITQDRLKELFAHHGKITKVVIPPAKP----GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 221 (342)
Q Consensus 153 ~~~~~~l~~~f~~~G~i~~v~i~~~~~----~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 221 (342)
+..+++|++.|++||.|.++.|+++.. +..++|++||+|.+.++|++|++.||+..+.||.|.|++...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 345689999999999999999985543 446799999999999999999999999999999999999864
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=4.4e-08 Score=70.51 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=67.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcC-----CcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHH-----GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
.++|-|-+||+.+++..|+.+.+++ |.|+.+.+..| .+-|+|+|.+...|-+|...|++.+|.|++|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 5889999999999999999999999 99999999998 578999999999999999999999999999998
Q ss_pred Eec
Q 019327 217 SLA 219 (342)
Q Consensus 217 ~~a 219 (342)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 643
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=3.4e-08 Score=69.77 Aligned_cols=72 Identities=7% Similarity=0.105 Sum_probs=60.1
Q ss_pred cCCeEEEcCCCCC-----CCH----HHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCC
Q 019327 47 AKHRLFIGNVPRN-----WGE----DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 117 (342)
Q Consensus 47 ~~~~l~v~nl~~~-----~te----~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 117 (342)
+..+|+|..++.. +-+ .+|.+.|++||+ |..++++.| -+||+|.+.++|.+|++ |++.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~-Vilvr~v~d---------~~fVtF~d~~sAl~AI~-ldG~-- 80 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGT-IVLVRINQG---------QMLVTFADSHSALSVLD-VDGM-- 80 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSC-CSEEEEETT---------EEEEECSCSHHHHHHHH-GGGS--
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCC-EEEEEEecC---------cEEEEEcChHHHHHHHh-cCCe--
Confidence 4578888877642 333 568899999998 999999998 29999999999999998 9985
Q ss_pred CCCCCCCeeecCCC
Q 019327 118 KLDDNAPTVSWADP 131 (342)
Q Consensus 118 ~~~~~~i~v~~~~~ 131 (342)
.++++.|+|++..+
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 89999999987543
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.63 E-value=6.6e-08 Score=81.71 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEeeCC---CCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCCeeecCCC
Q 019327 60 WGEDDMRKAVTKIGPGVISIELVKDP---QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 131 (342)
Q Consensus 60 ~te~~l~~~f~~~G~~v~~v~~~~~~---~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i~v~~~~~ 131 (342)
-.+++|++.|++||+ |.++.|.++. ..+++++|++||+|.+.++|++|++.|+++ .++|+.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~-v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr--~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR--WFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSC-EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCC-eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc--eECCeEEEEEEcCH
Confidence 457899999999999 9999998652 234589999999999999999999999997 78999999988754
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=8.2e-07 Score=63.49 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=71.9
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHh----hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTK----IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~----~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
...+|.|.|||++++++.|+-+|+. -|.+|.+++...+ -|+|+|.+.+.|+++++. ..|.+.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~---------~AvItF~d~~va~rVL~k---~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC---------GGVLTFREPADAERVLAQ---ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT---------EEEEEESSHHHHHHHHTC---SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC---------cEEEEEcChHHHHHHhcC---CcceecCe
Confidence 4578999999999999999999997 3334888877543 699999999999998764 35689999
Q ss_pred CCeeecCCCCCcccccccCceEEEEecCCCCCC
Q 019327 123 APTVSWADPRNAESSAASQVKALYVKNLPKDIT 155 (342)
Q Consensus 123 ~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 155 (342)
.+.|....+.. ..+|++.+|+..++
T Consensus 75 ~LsV~P~~~~~--------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAPPRA--------PARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECCCCC--------CCCCCCCSCCCCCC
T ss_pred EEEEEcCCCCC--------cceEeeecCCCCCC
Confidence 99997665553 37899999998765
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=9.8e-07 Score=63.54 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=63.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhh-----CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKI-----GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 121 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~-----G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 121 (342)
..++|-|-|||..++++.|+.+++++ |. ++.|.+..| -+-|+|+|.+..+|-+|.-.|++. .+.+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~-i~KI~L~pD-------H~GAivef~d~~~AgKasLaL~G~--ef~g 89 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKD-IRKILLVSD-------FNGAIIIFRDSKFAAKMLMILNGS--QFQG 89 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTT-CSEEEEETT-------TTEEEEECSCHHHHHHHHHHHSSE--EETT
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccc-eeEEEEecC-------CCceEEEEccchhhHHHHhhcCCe--eecC
Confidence 46889999999999999999999999 98 999999988 346999999999999999999996 6667
Q ss_pred CCCeee
Q 019327 122 NAPTVS 127 (342)
Q Consensus 122 ~~i~v~ 127 (342)
+.|+|.
T Consensus 90 r~Lr~g 95 (117)
T 2l9w_A 90 KVIRSG 95 (117)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 777664
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.10 E-value=1.9e-05 Score=56.78 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=64.8
Q ss_pred ceEEEEecCCCCC-C----HHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEE
Q 019327 142 VKALYVKNLPKDI-T----QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 216 (342)
Q Consensus 142 ~~~l~v~~l~~~~-~----~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 216 (342)
.++|+|.||+.++ . .+.++++|.+|+++.....++. =.-..|.|.++++|.+|...||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998765 2 2578999999999888877765 236789999999999999999999999999999
Q ss_pred EeccCCC
Q 019327 217 SLAKPQA 223 (342)
Q Consensus 217 ~~a~~~~ 223 (342)
-++++..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998554
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=5.1e-05 Score=54.23 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=64.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhc-----CCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEE
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAH-----HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 215 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~-----~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 215 (342)
...+|.|.|||..+.++.|.-+|+. -|+|.++.... .-|+|+|.+.+.|++++++ ..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3589999999999999999999987 26899988764 5789999999999999985 57789999999
Q ss_pred EEeccCCCCCC
Q 019327 216 CSLAKPQADQK 226 (342)
Q Consensus 216 v~~a~~~~~~~ 226 (342)
|.-..++...+
T Consensus 78 V~P~~~~~~~r 88 (104)
T 2dhx_A 78 LRPAPPRAPAR 88 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEcCCCCCcce
Confidence 98766655433
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=0.00021 Score=52.87 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred cCceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCC-cEEEEEe
Q 019327 140 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVLDCSL 218 (342)
Q Consensus 140 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~ 218 (342)
.....|.|-+.|... .+.|.++|++||+|++...... ..+-.|+|++..+|++||.+ |+..|.+ -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 345889999999775 5778888999999998887322 68999999999999999996 9999985 5666766
Q ss_pred cc
Q 019327 219 AK 220 (342)
Q Consensus 219 a~ 220 (342)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.64 E-value=0.0005 Score=48.51 Aligned_cols=78 Identities=10% Similarity=0.160 Sum_probs=61.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCC--CCCCceEEEEeCCHHHHHHHHHhcCCceeCCc-----EEE
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-----VLD 215 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~--~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-----~i~ 215 (342)
.+|.|++||+.+||+++.+.++....+.....+..+.. ...-.-|||.|.+.+++....+.++++.+.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999888776666544322 22346899999999999999999999877553 445
Q ss_pred EEecc
Q 019327 216 CSLAK 220 (342)
Q Consensus 216 v~~a~ 220 (342)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.60 E-value=0.00013 Score=51.55 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=46.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 019327 48 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 48 ~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
.+.++| .+|+++...||.++|+.||. ..|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg--v~I~WidD--------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN--IQISWIDD--------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS--CCCEEEET--------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC--EEEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence 345566 99999999999999999996 45677777 379999999999999999764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00017 Score=51.79 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019327 48 KHRLFIGNVPRNW-G----EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 122 (342)
Q Consensus 48 ~~~l~v~nl~~~~-t----e~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 122 (342)
.++|+|.||+.++ + ++.++++|..|++ +......+. -.-..|.|.++++|.+|...|++. .+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~-~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~Lh~~--~f~g~ 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDK-DTTFQYFKS-------FKRVRINFSNPLSAADARLRLHKT--EFLGK 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCS-SCEEEEETT-------TTEEEEECSSTTHHHHHHHTSTTS--EETTE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCc-CcceeecCc-------ceEEEEEeCChHHHHHHHHHhccc--eecCc
Confidence 5789999998875 3 2577999999999 777777665 235789999999999999999986 78899
Q ss_pred CCeeecCCCCC
Q 019327 123 APTVSWADPRN 133 (342)
Q Consensus 123 ~i~v~~~~~~~ 133 (342)
.++|-++.+..
T Consensus 75 ~~r~YFgq~~~ 85 (104)
T 1wey_A 75 EMKLYFAQTLH 85 (104)
T ss_dssp ECEEECCCCSS
T ss_pred eeEEEecCCCC
Confidence 99999887553
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00015 Score=51.27 Aligned_cols=54 Identities=20% Similarity=0.430 Sum_probs=46.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
+.++| .+|+++...||.++|+.||. ..|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg--v~I~WidD--------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN--IQISWIDD--------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE--EEEEEEET--------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC--EEEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999995 67777777 379999999999999999775
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.25 E-value=0.00053 Score=48.36 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=46.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 205 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 205 (342)
...++| .+|.++...||.++|+.||. ..|+++.| -.|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 366777 99999999999999999983 45666665 489999999999999998763
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00063 Score=48.14 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=46.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcC
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 205 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 205 (342)
..++| ++|.++...||.++|+.|| =..|+++.| -.|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 56666 9999999999999999998 556777776 489999999999999999764
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.08 E-value=0.002 Score=45.43 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=53.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCC-CCceEEEEEecCHHHHHHHHHHhCCCCC
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKF 117 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g-~~~g~afV~f~~~~~a~~a~~~l~~~~~ 117 (342)
++|.|.+||+.+||+++.+.+..+.+ +.....+.-....+ ..-.-|||.|.+.+++....+.+++..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~-~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPE-HDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCC-EEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCccc-ceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 47999999999999999999998887 77766665421111 2335699999999999999999998633
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.06 E-value=0.0022 Score=45.51 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=57.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCC--CCCceEEEEeCCHHHHHHHHHhcCCceeCCc-----EE
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ--ERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-----VL 214 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~--~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-----~i 214 (342)
+.+|.|+.||+.+||+++.+.++..-++.....+..+.+. ..-.-|||.|.+.++.....+.+++..+-+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4679999999999999999888776555443333332221 1235789999999999999999999877552 55
Q ss_pred EEEecc
Q 019327 215 DCSLAK 220 (342)
Q Consensus 215 ~v~~a~ 220 (342)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.53 E-value=0.006 Score=45.01 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=50.1
Q ss_pred CeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 37 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 37 g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
+.++........+.|.|-+.|++. ...|.++|++||+ |.+..... ...+-.|.|.+..+|++||.+ |+.
T Consensus 13 ~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~-Iv~~~~~~-------~~NWihI~Y~s~~~A~rAL~k-NG~ 81 (119)
T 1wwh_A 13 GDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGN-ILKHVMSN-------TGNWMHIRYQSKLQARKALSK-DGR 81 (119)
T ss_dssp --------CGGGGEEEEECCCGGG-HHHHHHHHHTTSC-EEEEEECS-------SSSEEEEEESSHHHHHHHHTT-TTC
T ss_pred CcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCc-EEEeccCC-------CCCeEEEEeCCHHHHHHHHHh-CCe
Confidence 455555566678899999999985 6788889999999 88777621 246999999999999999975 553
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.36 E-value=0.0053 Score=45.96 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=56.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEE-EEecCCCC---------CC----CCCceEEEEeCCHHHHHHHHHhcCCc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKP---------GQ----ERSRYGFVHFAERSSAMKALKNTEKY 207 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-v~i~~~~~---------~~----~~~g~~fV~f~~~~~a~~a~~~l~~~ 207 (342)
...|.|-+.|.+.+ ..+.+.|++||.|.+ +.+.++.. .. ...++..|+|++..+|++||.+ |+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 35677888876554 567778899999876 32222110 00 1257889999999999999996 999
Q ss_pred eeCCcEEEEEeccC
Q 019327 208 EIDGQVLDCSLAKP 221 (342)
Q Consensus 208 ~~~g~~i~v~~a~~ 221 (342)
.|.|.-|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887754
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.24 E-value=0.0021 Score=59.42 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=44.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHh
Q 019327 141 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 203 (342)
Q Consensus 141 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 203 (342)
..+.|+|. .+..+++.+|.++|++||+|.++...+++ ..|+.|+|.+.++++.++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 35889998 79899999999999999999999988764 46999999999999977654
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.99 E-value=0.0026 Score=58.74 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=44.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 45 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 45 ~~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
++..+.|+|. .|.++++.+|.++|++||+ |.++.+..+ . .-||.|||.+.++++.+++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~-i~~~~~~~~---~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGP-INNHFFYES---F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSC-CCCEEEECS---S---SEEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCC-cceEEEEcc---C---CeEEEEEeCCHHHHHHHHhc
Confidence 4456899997 8999999999999999999 999988766 2 36999999999999977644
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.78 E-value=0.0065 Score=43.04 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=47.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCC-CCceEEEEEecCHHHHHHHHHHhCCC
Q 019327 47 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNP 115 (342)
Q Consensus 47 ~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g-~~~g~afV~f~~~~~a~~a~~~l~~~ 115 (342)
..-+|.|..||+.+||+++.+.+..+-+ +.....+.-....+ ..-.-|||.|++.++.....+..++.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~-~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPA-HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSS-EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCc-cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 3458999999999999998887776544 43322222111111 11235999999999999999998885
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.83 E-value=0.58 Score=43.93 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=45.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 49 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 49 ~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
+.++|+ +|..+...+|.++|+.||. .+|..+.+ ..|||.|.+.++|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~--v~V~widd--------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN--IQISWIDD--------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC--CEEEECSS--------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC--EEEEEEcC--------CeEEEEECCHHHHHHHHHHHHh
Confidence 456665 9999999999999999996 45666554 3799999999999999998754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.79 E-value=1.1 Score=42.17 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=46.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
...++|+ ++..+...+|.+.|+.||. .+|+++.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4667776 8889999999999999994 46666655 4799999999999999998753
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=83.90 E-value=1.2 Score=33.23 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=30.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 019327 10 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 45 (342)
Q Consensus 10 ~G~afV~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~ 45 (342)
...-.|+|++..+|.+|+. .||..|.|..|-|.+-
T Consensus 62 ~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEEC
Confidence 5677999999999999997 7999999987777654
No 403
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=75.38 E-value=6.1 Score=26.45 Aligned_cols=61 Identities=5% Similarity=0.039 Sum_probs=40.1
Q ss_pred eEEEEeCCHHHHHHHHHH---hCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhCC
Q 019327 12 YAFVTFRTKELASQAIEE---LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~---~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G~ 74 (342)
|.+++|+...++..-++. +|...|.--.|+++..+.-..+|| |.++.+++++....++|-.
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~YE~m~I--l~P~l~ee~~~~~vek~~~ 70 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIV--LNPNLDQSQLQNEKEIIQR 70 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEEEEEEE--ECTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCceEEEEE--ECCCCCHHHHHHHHHHHHH
Confidence 788999887777666664 333344333444444444457777 6788899999888877643
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.03 E-value=10 Score=24.99 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHhcCC-----cEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCCceeCCcEEEEEecc
Q 019327 153 DITQDRLKELFAHHG-----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 220 (342)
Q Consensus 153 ~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 220 (342)
.++..+|..++..-+ .|-.|.|.. .|.||+-... .+..+++.|+...+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 456667777766443 455777753 4889988655 4667888899999999999998764
No 405
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.58 E-value=0.88 Score=40.66 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=5.4
Q ss_pred CCHHHHHHHHh
Q 019327 154 ITQDRLKELFA 164 (342)
Q Consensus 154 ~~~~~l~~~f~ 164 (342)
+++++|+++..
T Consensus 229 vt~~~l~~i~~ 239 (358)
T 2pk2_A 229 VTLELLDELTH 239 (358)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555443
No 406
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=65.17 E-value=3 Score=27.85 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=37.3
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhC
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 73 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G 73 (342)
.|.+.+.|+...+.|... |....|.....-.+|+|+.+......+.+.+-+...|
T Consensus 16 af~~~~~A~~~~~~L~~~---g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g 70 (79)
T 1x60_A 16 AFKVKANADSLASNAEAK---GFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAG 70 (79)
T ss_dssp EESCHHHHHHHHHHHHHH---TCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHHhC---CCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcC
Confidence 499999999999987643 4455555555556888887655545555666665555
No 407
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=61.18 E-value=18 Score=25.32 Aligned_cols=59 Identities=5% Similarity=0.052 Sum_probs=40.2
Q ss_pred eEEEEeCCHHHHHHHHHH---hCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhh
Q 019327 12 YAFVTFRTKELASQAIEE---LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 72 (342)
Q Consensus 12 ~afV~f~~~e~A~~a~~~---~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~ 72 (342)
|++++|+...++.+-++. +|...+.--.|+++.-+.-..+|| |.++.+++++..+.++|
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~Mr~YE~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSSSSCEEEEEE--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhhhhhhheeee--eCCCCCHHHHHHHHHHH
Confidence 788999988888877764 444444444455553333457777 78889999887777665
No 408
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=56.80 E-value=19 Score=23.97 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=40.2
Q ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEeecccCCeEEEcCCCCCCCHHHHHHHHHhhC
Q 019327 16 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 73 (342)
Q Consensus 16 ~f~~~e~A~~a~~~~~g~~~~g~~i~v~~~~~~~~l~v~nl~~~~te~~l~~~f~~~G 73 (342)
.|.+.+.|++..+.|.. .|....|.....-.+|+|+.+......+.+.+-+...|
T Consensus 16 aF~~~~~A~~l~~~L~~---~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g 70 (81)
T 1uta_A 16 SFRGAEQAETVRAQLAF---EGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAG 70 (81)
T ss_dssp EESCHHHHHHHHHHHHH---HTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHC
T ss_pred EcCCHHHHHHHHHHHHh---CCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcC
Confidence 58999999999998753 24455555555567899998876666667777777665
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.25 E-value=48 Score=22.53 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=47.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 46 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 46 ~~~~~l~v~nl~~~~te~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
+.++-|-|-|+|..+-..++.-.....|- ---|..+. |-|.|.|.+.++...|+.+|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgy-efycdyid---------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGY-EFYCDYID---------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCC-CEEEEECS---------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCe-eEeeeeec---------CeeEEEecCChHHHHHHHHHHh
Confidence 34677888999999999999888888886 44555543 4699999999999999988653
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.94 E-value=49 Score=22.51 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=44.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
..-|.|-|+|..+-..++.-.....|---.+..+ .|-|.|.|.+.++...|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3667888999999888887777777766666655 578999999999999999886
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.81 E-value=50 Score=20.81 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=42.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 019327 142 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 204 (342)
Q Consensus 142 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 204 (342)
..++.|.++.-.-=...|++.+.+ ..|..+.+... .+.+.|+|.+.++...+|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 367888888766667888999988 77888888655 567888888666677777763
No 412
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=47.24 E-value=6.5 Score=20.51 Aligned_cols=9 Identities=56% Similarity=1.379 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q 019327 334 RGRSRYNPY 342 (342)
Q Consensus 334 ~g~~r~~py 342 (342)
||++||-||
T Consensus 16 rggnrfepY 24 (30)
T 2ot8_C 16 RGGNRFEPY 24 (30)
T ss_pred cCCcccccc
Confidence 456688877
No 413
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=46.17 E-value=18 Score=18.76 Aligned_cols=6 Identities=50% Similarity=0.971 Sum_probs=3.9
Q ss_pred CCCCCC
Q 019327 337 SRYNPY 342 (342)
Q Consensus 337 ~r~~py 342 (342)
-|-|||
T Consensus 24 rr~rpy 29 (29)
T 4fdd_B 24 RRERPY 29 (29)
T ss_pred cccCCC
Confidence 366777
No 414
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=43.17 E-value=65 Score=20.81 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=40.6
Q ss_pred eEEEcCC-CCCCCHHHHHHHHHhhCC----CeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCCCCCCCCCC
Q 019327 50 RLFIGNV-PRNWGEDDMRKAVTKIGP----GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 124 (342)
Q Consensus 50 ~l~v~nl-~~~~te~~l~~~f~~~G~----~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~i 124 (342)
+|+|..= -..++..+|..++..-+. +|-.|.+..+ |.||+-... .+..+++.|+.. .+.++.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~---------~s~v~v~~~-~~~~~~~~l~~~--~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN---------ASYVEILNG-KGPHVLKVMKNT--TVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS---------CEEEEECTT-CHHHHHHHHTTC--CC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC---------cEEEEECHH-HHHHHHHHhccc--cCcCceE
Confidence 4556322 234777888888875443 3566777544 788988654 467788888875 6788888
Q ss_pred eeecC
Q 019327 125 TVSWA 129 (342)
Q Consensus 125 ~v~~~ 129 (342)
.++.+
T Consensus 70 ~v~~~ 74 (76)
T 2g0c_A 70 KVNKA 74 (76)
T ss_dssp CEEEC
T ss_pred EEEEC
Confidence 88754
No 415
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=39.40 E-value=1.2e+02 Score=22.76 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 55 NVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 55 nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
.++..++..+|++.++. |+-.|..|..+.-+ .+ .--|||.+....+|......
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~--~g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRP--NG--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECT--TS--CEEEEEEECTTCCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC--CC--ceEEEEEeCCCCcHHHHHHh
Confidence 46778999999999987 56567777776652 22 33599999888777665443
No 416
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=37.76 E-value=1.3e+02 Score=22.91 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHH
Q 019327 55 NVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110 (342)
Q Consensus 55 nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 110 (342)
.++..++..+|++.++. |+-.|..|..+..+ .+ .--|||.+....+|.....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~--~g--~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP--DG--KKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECT--TS--SEEEEEEECTTSCHHHHHG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC--CC--ceEEEEEcCCCCcHHHHHH
Confidence 46778999999999987 56567777776642 22 3359999998877776543
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=37.59 E-value=53 Score=25.58 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=34.6
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHH
Q 019327 50 RLFIGNVPR-N--------WGEDDMRKAV--TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 104 (342)
Q Consensus 50 ~l~v~nl~~-~--------~te~~l~~~f--~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~ 104 (342)
.+.|-|+|. . ...++|++.| +.|.+ .+|+.+.+ ...+.|+|.|+|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p--~kv~~l~~---~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNP--TRVRPLWN---YLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCC--SEEEEEEC---SSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCC--ceeEeccc---CCCCceeEEEEecCChH
Confidence 455667765 1 4457899977 88986 45666666 23478999999985443
No 418
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=34.79 E-value=1.1e+02 Score=23.16 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 019327 51 LFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 111 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 111 (342)
-|+-.++..++..+|++.++. |+-.|..|..+..+ .+ .--|||.+....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p--~g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI--TG--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT--TS--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC--CC--cEEEEEEcCCCCcHHHHHHh
Confidence 334457789999999999987 56567777776652 22 33599999887777765443
No 419
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.53 E-value=1.1e+02 Score=20.87 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 019327 73 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 112 (342)
Q Consensus 73 G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 112 (342)
+-+|.++.+.. ...||.||++...++...+++..
T Consensus 37 ~l~i~~v~vP~------~fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 37 QLDVYSILASE------SLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp TCCEEEEEECT------TSTTEEEEEESSHHHHHHHHTTC
T ss_pred CCcEEEEEEec------ccCCEEEEEEecchhHHHHHHCC
Confidence 43355555532 26899999999998887776543
No 420
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.21 E-value=33 Score=21.92 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=9.3
Q ss_pred CceEEEEeCCH
Q 019327 184 SRYGFVHFAER 194 (342)
Q Consensus 184 ~g~~fV~f~~~ 194 (342)
+..|+|.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 67999999875
No 421
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.55 E-value=92 Score=18.95 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=38.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCC---HHHHHHHHHh
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE---RSSAMKALKN 203 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~---~~~a~~a~~~ 203 (342)
.++.|.++.-.--...|++.+.....|..+.+... .+.+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778877765556788888988877888887655 5678888843 3455555554
No 422
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=30.47 E-value=1.2e+02 Score=20.20 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 019327 63 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 113 (342)
Q Consensus 63 ~~l~~~f~~~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 113 (342)
+||..-++..|- |..+.-..- +.-+++-.-..+|.+.+.-++|.+.++
T Consensus 37 edlysrlsaagl-irhviskvw--nkeqhrismvfeydskegyqkcqeiid 84 (117)
T 2op5_A 37 EDLYSRLSAAGL-IRHVISKVW--NKEQHRISMVFEYDSKEGYQKCQEIID 84 (117)
T ss_dssp HHHHHHHHHHTE-EEEEEEEEC--CTTCCEEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH-HHHHHHHHh--hhhhceeEEEEEeccHhhHHHHHHHHH
Confidence 577888888886 776544332 344566667779999999888876543
No 423
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=26.74 E-value=86 Score=23.29 Aligned_cols=65 Identities=8% Similarity=0.124 Sum_probs=39.3
Q ss_pred eEEEEeecccCCeEE-EcCCCCCCCHHHHHHHHHh-hC-CCeEEEEEeeCC---------CCCCCCceEEEEEecCH
Q 019327 38 KKIKCSAAQAKHRLF-IGNVPRNWGEDDMRKAVTK-IG-PGVISIELVKDP---------QNANQNRGFAFIEYYNH 102 (342)
Q Consensus 38 ~~i~v~~~~~~~~l~-v~nl~~~~te~~l~~~f~~-~G-~~v~~v~~~~~~---------~~~g~~~g~afV~f~~~ 102 (342)
..+.|--.+....+. +-.+...++++++++.+.+ .. ..|.++.+=... .......+|.|+.|.+-
T Consensus 52 ~~~~V~Vp~~~~~v~~v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 52 TALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp CEEEEEEESSTTSCCEEEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred CEEEEEEECCCCeEEEEEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 444433334444555 7788889999999999964 43 236666652210 11233467888888763
No 424
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.87 E-value=1.8e+02 Score=22.21 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHH
Q 019327 51 LFIGNVPRNWGEDDMRKAVTK-IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 110 (342)
Q Consensus 51 l~v~nl~~~~te~~l~~~f~~-~G~~v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 110 (342)
-|+=.++.++|..+|++.++. |+-.|..|..+.-+ .+ .--|||++....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~--~~--~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP--DG--EKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS--SS--CEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC--CC--ceEEEEEECCCCcHHHHHH
Confidence 444457889999999999987 66567777776652 12 3359999988776555443
No 425
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.31 E-value=1.7e+02 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=25.5
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 019327 76 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 114 (342)
Q Consensus 76 v~~v~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 114 (342)
|.++....+ .+||-|||=.+..++..|++.+..
T Consensus 41 I~Si~~~~~------lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 41 IKSVVAPEH------VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCEEEECTT------CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred eEEEEecCC------CceEEEEEeCCHHHHHHHHhcccc
Confidence 666655332 589999999999999999876653
No 426
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.69 E-value=53 Score=21.63 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=14.1
Q ss_pred CcEEEEEecCCCCCCCCCceEEEEeCCH
Q 019327 167 GKITKVVIPPAKPGQERSRYGFVHFAER 194 (342)
Q Consensus 167 G~i~~v~i~~~~~~~~~~g~~fV~f~~~ 194 (342)
|+|..|... +..|+|.|+|.
T Consensus 45 GTI~kV~~~--------~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA--------REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT--------TTEEEEEETTS
T ss_pred EEEEEeccC--------CCEEEEEEcCC
Confidence 566665443 56899999875
No 427
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.31 E-value=1.5e+02 Score=18.31 Aligned_cols=56 Identities=7% Similarity=0.096 Sum_probs=39.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeC----CHHHHHHHHHhc
Q 019327 143 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA----ERSSAMKALKNT 204 (342)
Q Consensus 143 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~----~~~~a~~a~~~l 204 (342)
.++.|.++.-.-=...|++.+.+...|..+.+... .+.+.|+|+ +.++..++++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46777777655455788888888877887777554 567889985 445666677653
No 428
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.79 E-value=19 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeC
Q 019327 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 192 (342)
Q Consensus 157 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~ 192 (342)
+|+.++|...|.|+.... . +||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---R-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET---T-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEEC---C-----CCeeEEeeC
Confidence 455566666666655433 2 799999976
No 429
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=21.71 E-value=46 Score=23.50 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=14.6
Q ss_pred CCCccceEEEEeCCHHHHHH
Q 019327 6 SGEAKGYAFVTFRTKELASQ 25 (342)
Q Consensus 6 tg~~~G~afV~f~~~e~A~~ 25 (342)
.|++.|||.| |+|.+.|.+
T Consensus 61 ~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 61 KLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp SSEEEEEEEE-CSCHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 4688999977 788887764
No 430
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.54 E-value=64 Score=20.67 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=9.3
Q ss_pred CceEEEEeCCH
Q 019327 184 SRYGFVHFAER 194 (342)
Q Consensus 184 ~g~~fV~f~~~ 194 (342)
++.|+|.|++-
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 68999999874
No 431
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=21.05 E-value=20 Score=25.46 Aligned_cols=46 Identities=7% Similarity=0.132 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCCceEEEEeCCHHHHHHHHHhcCC
Q 019327 157 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 206 (342)
Q Consensus 157 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 206 (342)
+.|+++-++.+. .|.|..+..... ...+.|. -+.+.+++|++.+..
T Consensus 31 ~~Ik~I~~~TGa--kI~I~~~~~~~~-er~V~I~-G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 31 EMIKKIQNDAGV--RIQFKQDDGTGP-EKIAHIM-GPPDRCEHAARIIND 76 (106)
T ss_dssp HHHHHHHHHHTC--EEEECSSCSSSS-EEEEEEE-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc--EEEEecCCCCCc-eeEEEEE-eCHHHHHHHHHHHHH
Confidence 445555555553 466654432111 1233343 667877888776543
No 432
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=20.50 E-value=40 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=12.7
Q ss_pred CCCccceEEEEeCCHHHHHH
Q 019327 6 SGEAKGYAFVTFRTKELASQ 25 (342)
Q Consensus 6 tg~~~G~afV~f~~~e~A~~ 25 (342)
.+++.|||.| |+|.+.|.+
T Consensus 62 ~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 3678888877 566665544
No 433
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=20.40 E-value=92 Score=20.82 Aligned_cols=21 Identities=10% Similarity=0.406 Sum_probs=18.4
Q ss_pred cCCCCCCCHHHHHHHHHhhCC
Q 019327 54 GNVPRNWGEDDMRKAVTKIGP 74 (342)
Q Consensus 54 ~nl~~~~te~~l~~~f~~~G~ 74 (342)
|.|...+||++|++++++..+
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~~ 70 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVAG 70 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHSC
T ss_pred CCCCCCcCHHHHHHHHHHHcc
Confidence 578889999999999999754
Done!