Query 019328
Match_columns 342
No_of_seqs 294 out of 2081
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 5.2E-78 1.1E-82 585.3 37.8 341 1-341 1-341 (386)
2 COG0111 SerA Phosphoglycerate 100.0 8.6E-74 1.9E-78 544.0 30.9 302 13-341 1-303 (324)
3 COG1052 LdhA Lactate dehydroge 100.0 7E-73 1.5E-77 537.4 32.6 303 15-341 2-309 (324)
4 PRK15409 bifunctional glyoxyla 100.0 1.9E-72 4.2E-77 536.4 34.6 304 14-341 1-306 (323)
5 PRK08410 2-hydroxyacid dehydro 100.0 1.7E-70 3.7E-75 521.2 33.5 294 17-341 2-304 (311)
6 PRK11790 D-3-phosphoglycerate 100.0 2.3E-70 5E-75 537.4 34.0 304 9-341 4-313 (409)
7 PRK06487 glycerate dehydrogena 100.0 9.6E-70 2.1E-74 517.4 33.4 282 30-341 18-305 (317)
8 PRK13243 glyoxylate reductase; 100.0 1.5E-69 3.2E-74 519.4 34.6 304 15-341 2-309 (333)
9 PRK06932 glycerate dehydrogena 100.0 3.3E-69 7.3E-74 512.8 32.2 267 50-341 33-307 (314)
10 KOG0068 D-3-phosphoglycerate d 100.0 6.4E-70 1.4E-74 501.4 26.2 301 14-341 5-308 (406)
11 PLN03139 formate dehydrogenase 100.0 1.1E-66 2.3E-71 504.9 33.7 292 29-341 67-361 (386)
12 PRK07574 formate dehydrogenase 100.0 1E-66 2.3E-71 505.2 31.8 291 30-341 61-354 (385)
13 PLN02928 oxidoreductase family 100.0 2.5E-66 5.5E-71 499.1 33.9 312 10-341 13-332 (347)
14 TIGR01327 PGDH D-3-phosphoglyc 100.0 4.4E-66 9.5E-71 522.2 33.6 298 17-341 1-298 (525)
15 PRK13581 D-3-phosphoglycerate 100.0 3.4E-65 7.3E-70 515.9 33.1 298 16-341 1-299 (526)
16 PRK12480 D-lactate dehydrogena 100.0 9.5E-65 2.1E-69 485.1 31.4 301 15-341 1-317 (330)
17 PRK08605 D-lactate dehydrogena 100.0 6E-64 1.3E-68 480.6 32.7 304 13-341 1-319 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 9.4E-64 2E-68 470.3 23.0 273 50-341 49-322 (336)
19 PRK15438 erythronate-4-phospha 100.0 7.5E-61 1.6E-65 462.4 29.2 271 16-341 1-275 (378)
20 PRK00257 erythronate-4-phospha 100.0 7.6E-60 1.6E-64 456.7 29.1 271 16-341 1-275 (381)
21 PRK15469 ghrA bifunctional gly 100.0 6E-59 1.3E-63 441.7 28.6 283 17-341 2-294 (312)
22 PRK06436 glycerate dehydrogena 100.0 1.9E-58 4.1E-63 436.1 29.9 243 62-341 34-277 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 4.6E-51 9.9E-56 359.0 16.0 177 128-322 1-178 (178)
24 KOG0067 Transcription factor C 100.0 2.4E-32 5.1E-37 255.2 14.0 265 51-340 62-332 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 4.1E-22 8.8E-27 196.4 17.5 171 92-306 197-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.9 1.9E-20 4.2E-25 176.2 17.6 200 28-275 15-243 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.7 4.5E-17 9.7E-22 136.2 12.5 101 18-127 1-101 (133)
28 PRK08306 dipicolinate synthase 99.7 1.2E-15 2.5E-20 144.5 19.8 196 28-273 16-242 (296)
29 PLN02494 adenosylhomocysteinas 99.7 8.5E-17 1.9E-21 158.5 10.7 122 161-303 250-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.6 5.8E-15 1.3E-19 144.4 16.9 121 161-301 191-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 1.7E-14 3.6E-19 136.1 8.6 97 161-275 12-108 (335)
32 PRK05476 S-adenosyl-L-homocyst 99.5 1.3E-12 2.9E-17 128.5 16.7 156 92-284 155-312 (425)
33 PF03446 NAD_binding_2: NAD bi 99.4 1.1E-12 2.4E-17 113.5 8.3 111 166-291 2-113 (163)
34 COG2084 MmsB 3-hydroxyisobutyr 99.4 3.2E-12 7E-17 119.4 10.3 124 166-303 1-126 (286)
35 PF00670 AdoHcyase_NAD: S-aden 99.3 7.6E-12 1.6E-16 107.2 10.8 105 161-285 19-124 (162)
36 TIGR01505 tartro_sem_red 2-hyd 99.3 1.6E-11 3.4E-16 116.0 9.6 111 167-292 1-113 (291)
37 PRK11559 garR tartronate semia 99.3 2E-11 4.4E-16 115.4 10.0 123 166-303 3-127 (296)
38 PRK15461 NADH-dependent gamma- 99.2 5.7E-11 1.2E-15 112.6 10.2 112 166-292 2-115 (296)
39 PRK12490 6-phosphogluconate de 99.2 7.5E-11 1.6E-15 111.9 10.9 113 167-297 2-117 (299)
40 cd00401 AdoHcyase S-adenosyl-L 99.2 2E-10 4.4E-15 112.9 13.7 105 160-284 197-302 (413)
41 PRK05479 ketol-acid reductoiso 99.1 8.6E-11 1.9E-15 112.2 7.3 120 161-305 13-132 (330)
42 PRK09599 6-phosphogluconate de 99.1 5.1E-10 1.1E-14 106.3 11.1 110 167-292 2-114 (301)
43 PLN02712 arogenate dehydrogena 99.1 4.3E-10 9.3E-15 117.2 10.2 113 159-288 363-476 (667)
44 PLN02350 phosphogluconate dehy 99.0 1E-09 2.2E-14 110.4 9.7 128 167-303 8-138 (493)
45 PLN02256 arogenate dehydrogena 99.0 5E-09 1.1E-13 99.6 12.9 136 163-321 34-174 (304)
46 PRK15059 tartronate semialdehy 99.0 2E-09 4.3E-14 101.9 9.6 113 167-297 2-116 (292)
47 PLN02858 fructose-bisphosphate 98.9 3.5E-09 7.6E-14 118.0 11.1 119 164-297 3-123 (1378)
48 PTZ00142 6-phosphogluconate de 98.9 3.4E-09 7.4E-14 106.3 9.8 128 166-303 2-132 (470)
49 PLN02858 fructose-bisphosphate 98.9 4.1E-09 9E-14 117.4 10.9 110 164-288 323-434 (1378)
50 PLN02545 3-hydroxybutyryl-CoA 98.9 1.2E-08 2.5E-13 96.6 12.0 118 166-288 5-133 (295)
51 TIGR00872 gnd_rel 6-phosphoglu 98.9 1E-08 2.2E-13 97.3 11.4 109 167-292 2-113 (298)
52 KOG0409 Predicted dehydrogenas 98.9 6.1E-09 1.3E-13 96.6 8.3 115 162-291 32-149 (327)
53 TIGR01692 HIBADH 3-hydroxyisob 98.9 6.2E-09 1.3E-13 98.2 8.3 111 170-297 1-113 (288)
54 PRK08655 prephenate dehydrogen 98.9 2.5E-08 5.5E-13 99.4 12.8 144 166-332 1-147 (437)
55 TIGR00465 ilvC ketol-acid redu 98.8 8.8E-09 1.9E-13 98.3 8.8 98 163-277 1-98 (314)
56 PRK07417 arogenate dehydrogena 98.8 3.9E-08 8.5E-13 92.4 12.0 140 167-332 2-151 (279)
57 TIGR00873 gnd 6-phosphoglucona 98.8 1.8E-08 4E-13 101.0 10.3 125 167-302 1-128 (467)
58 PRK07502 cyclohexadienyl dehyd 98.8 4.4E-08 9.5E-13 93.3 12.2 149 165-332 6-163 (307)
59 PRK07066 3-hydroxybutyryl-CoA 98.8 5.2E-08 1.1E-12 93.2 12.5 154 166-328 8-167 (321)
60 PRK09260 3-hydroxybutyryl-CoA 98.8 5.2E-08 1.1E-12 91.9 12.1 128 166-299 2-141 (288)
61 PRK08818 prephenate dehydrogen 98.8 8.7E-08 1.9E-12 93.2 13.7 122 164-320 3-130 (370)
62 PRK14619 NAD(P)H-dependent gly 98.8 1.6E-08 3.6E-13 96.3 8.0 84 164-277 3-87 (308)
63 PRK15182 Vi polysaccharide bio 98.8 6.7E-08 1.5E-12 96.0 12.3 148 166-317 7-173 (425)
64 COG0499 SAM1 S-adenosylhomocys 98.8 3.8E-08 8.2E-13 93.3 9.6 104 162-285 206-310 (420)
65 PF03807 F420_oxidored: NADP o 98.8 2.7E-08 5.8E-13 78.0 7.3 92 167-274 1-96 (96)
66 PRK14189 bifunctional 5,10-met 98.8 3.7E-07 7.9E-12 85.6 16.0 171 31-276 55-234 (285)
67 PRK06545 prephenate dehydrogen 98.8 7.4E-08 1.6E-12 93.8 11.9 148 166-333 1-159 (359)
68 PRK11064 wecC UDP-N-acetyl-D-m 98.7 9.7E-08 2.1E-12 94.7 12.2 110 166-289 4-136 (415)
69 COG0287 TyrA Prephenate dehydr 98.7 1.4E-07 3E-12 88.6 12.4 149 165-335 3-158 (279)
70 TIGR00518 alaDH alanine dehydr 98.7 5.6E-08 1.2E-12 95.0 9.9 103 162-272 164-267 (370)
71 PLN02712 arogenate dehydrogena 98.7 3.7E-08 8E-13 102.9 9.1 97 162-275 49-146 (667)
72 PRK05225 ketol-acid reductoiso 98.7 1.6E-08 3.5E-13 99.3 5.6 98 161-277 32-135 (487)
73 PRK11199 tyrA bifunctional cho 98.7 1.9E-07 4.1E-12 91.4 12.4 81 164-275 97-178 (374)
74 PRK08293 3-hydroxybutyryl-CoA 98.7 5.2E-07 1.1E-11 85.1 14.8 157 166-335 4-172 (287)
75 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 2.7E-07 5.9E-12 82.6 11.9 111 160-292 23-134 (200)
76 PF07991 IlvN: Acetohydroxy ac 98.7 5.2E-08 1.1E-12 83.3 6.7 94 163-275 2-97 (165)
77 PLN02688 pyrroline-5-carboxyla 98.6 3.9E-07 8.5E-12 84.7 12.7 104 166-288 1-109 (266)
78 PRK14194 bifunctional 5,10-met 98.6 1.2E-07 2.5E-12 89.5 8.7 169 32-275 57-234 (301)
79 PRK14175 bifunctional 5,10-met 98.6 1.6E-06 3.4E-11 81.4 15.8 170 31-275 55-233 (286)
80 PRK07679 pyrroline-5-carboxyla 98.6 2.8E-07 6.1E-12 86.5 11.0 107 165-288 3-113 (279)
81 TIGR00561 pntA NAD(P) transhyd 98.6 1.1E-05 2.4E-10 81.5 22.5 234 14-272 11-284 (511)
82 PRK14179 bifunctional 5,10-met 98.6 2E-06 4.4E-11 80.6 16.0 170 31-275 55-233 (284)
83 PRK05808 3-hydroxybutyryl-CoA 98.6 6.6E-07 1.4E-11 84.1 12.6 118 166-288 4-132 (282)
84 PRK07530 3-hydroxybutyryl-CoA 98.6 1.8E-06 4E-11 81.5 15.3 154 166-334 5-170 (292)
85 PRK13302 putative L-aspartate 98.5 4.5E-07 9.8E-12 84.9 9.9 110 165-291 6-117 (271)
86 cd01065 NAD_bind_Shikimate_DH 98.5 1.1E-06 2.4E-11 74.6 11.5 114 162-290 16-132 (155)
87 PRK14618 NAD(P)H-dependent gly 98.5 1.2E-06 2.5E-11 84.2 12.2 115 165-288 4-123 (328)
88 PRK07819 3-hydroxybutyryl-CoA 98.5 1.1E-06 2.4E-11 83.0 11.3 130 166-301 6-147 (286)
89 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 7.2E-07 1.6E-11 77.6 9.1 82 161-278 40-122 (168)
90 TIGR03026 NDP-sugDHase nucleot 98.5 2.1E-06 4.6E-11 85.1 13.3 148 167-318 2-174 (411)
91 KOG1370 S-adenosylhomocysteine 98.5 5.7E-07 1.2E-11 83.6 8.4 95 162-276 211-305 (434)
92 PRK06035 3-hydroxyacyl-CoA deh 98.5 4.7E-06 1E-10 78.7 14.8 130 166-301 4-147 (291)
93 PRK08268 3-hydroxy-acyl-CoA de 98.4 8.3E-07 1.8E-11 90.2 10.1 131 166-303 8-150 (507)
94 PRK12491 pyrroline-5-carboxyla 98.4 7.4E-07 1.6E-11 83.5 8.9 104 166-287 3-110 (272)
95 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 1.5E-06 3.3E-11 88.1 11.6 132 166-304 6-149 (503)
96 PF01488 Shikimate_DH: Shikima 98.4 1E-06 2.2E-11 73.9 8.3 102 162-275 9-112 (135)
97 PRK14188 bifunctional 5,10-met 98.4 1E-06 2.2E-11 83.2 9.0 169 31-275 55-233 (296)
98 PRK06130 3-hydroxybutyryl-CoA 98.4 2.3E-06 4.9E-11 81.5 11.4 124 166-294 5-136 (311)
99 PRK08507 prephenate dehydrogen 98.4 9.2E-07 2E-11 82.9 8.5 100 167-288 2-103 (275)
100 PRK14806 bifunctional cyclohex 98.4 1.6E-06 3.6E-11 92.0 11.5 144 166-330 4-159 (735)
101 PRK06928 pyrroline-5-carboxyla 98.4 2.2E-06 4.8E-11 80.5 10.6 107 166-288 2-112 (277)
102 PRK00094 gpsA NAD(P)H-dependen 98.4 1.5E-06 3.4E-11 82.8 9.3 107 166-277 2-110 (325)
103 PRK15057 UDP-glucose 6-dehydro 98.4 2.8E-06 6.1E-11 83.5 11.0 141 167-317 2-160 (388)
104 PRK07531 bifunctional 3-hydrox 98.4 4.7E-06 1E-10 84.5 12.8 118 166-288 5-130 (495)
105 PRK06129 3-hydroxyacyl-CoA deh 98.3 1E-05 2.2E-10 77.1 14.1 154 166-332 3-167 (308)
106 PRK14191 bifunctional 5,10-met 98.3 1.5E-05 3.1E-10 74.8 14.7 170 31-275 54-232 (285)
107 PRK05472 redox-sensing transcr 98.3 4.7E-07 1E-11 81.8 4.4 132 123-288 63-201 (213)
108 PF01210 NAD_Gly3P_dh_N: NAD-d 98.3 3E-06 6.5E-11 72.8 8.8 105 167-275 1-106 (157)
109 PRK14178 bifunctional 5,10-met 98.3 2.9E-05 6.2E-10 72.7 15.5 170 31-275 49-227 (279)
110 PRK10792 bifunctional 5,10-met 98.3 6.4E-05 1.4E-09 70.5 17.1 78 161-274 155-233 (285)
111 PF02737 3HCDH_N: 3-hydroxyacy 98.2 9.8E-06 2.1E-10 71.3 10.7 153 167-329 1-163 (180)
112 PRK14176 bifunctional 5,10-met 98.2 5.6E-05 1.2E-09 71.0 16.2 169 31-274 61-238 (287)
113 PRK07680 late competence prote 98.2 9.6E-06 2.1E-10 75.9 10.3 104 167-287 2-109 (273)
114 PRK06476 pyrroline-5-carboxyla 98.2 5.2E-06 1.1E-10 77.0 8.2 104 167-289 2-108 (258)
115 PRK09424 pntA NAD(P) transhydr 98.2 0.00025 5.5E-09 71.9 20.4 228 30-273 23-286 (509)
116 PRK07634 pyrroline-5-carboxyla 98.2 1.4E-05 3.1E-10 73.2 10.4 109 164-289 3-114 (245)
117 TIGR01724 hmd_rel H2-forming N 98.2 2.2E-05 4.7E-10 74.4 11.6 146 177-336 32-182 (341)
118 PRK14170 bifunctional 5,10-met 98.2 0.00013 2.8E-09 68.4 16.6 170 31-275 54-232 (284)
119 PRK14173 bifunctional 5,10-met 98.1 9.1E-05 2E-09 69.6 15.2 171 31-276 52-231 (287)
120 PRK14172 bifunctional 5,10-met 98.1 0.00017 3.7E-09 67.5 16.6 170 31-275 55-233 (278)
121 PRK14190 bifunctional 5,10-met 98.1 0.00022 4.8E-09 66.9 17.1 171 31-276 55-234 (284)
122 PF01262 AlaDh_PNT_C: Alanine 98.1 1.2E-05 2.7E-10 69.8 8.0 110 161-272 16-139 (168)
123 PRK09287 6-phosphogluconate de 98.1 1.3E-05 2.8E-10 80.4 9.1 117 176-303 1-120 (459)
124 PF10727 Rossmann-like: Rossma 98.1 5.6E-06 1.2E-10 68.7 5.3 93 164-272 9-104 (127)
125 COG1023 Gnd Predicted 6-phosph 98.1 2.7E-05 5.8E-10 70.5 9.6 116 166-299 1-119 (300)
126 cd05311 NAD_bind_2_malic_enz N 98.1 4.5E-05 9.8E-10 69.6 11.3 139 161-323 21-169 (226)
127 PRK11880 pyrroline-5-carboxyla 98.1 8.3E-05 1.8E-09 69.2 13.3 102 166-287 3-107 (267)
128 PRK14183 bifunctional 5,10-met 98.0 0.00021 4.5E-09 67.0 15.8 170 31-275 54-232 (281)
129 TIGR01546 GAPDH-II_archae glyc 98.0 2.1E-05 4.6E-10 75.5 9.4 101 168-272 1-108 (333)
130 TIGR01035 hemA glutamyl-tRNA r 98.0 1.1E-05 2.3E-10 80.2 7.6 98 162-274 177-279 (417)
131 PRK14171 bifunctional 5,10-met 98.0 0.0004 8.8E-09 65.3 17.3 170 31-274 55-233 (288)
132 COG0686 Ald Alanine dehydrogen 98.0 1.1E-05 2.4E-10 75.5 6.7 107 162-277 165-275 (371)
133 PLN00203 glutamyl-tRNA reducta 98.0 2.3E-05 4.9E-10 79.7 9.4 101 162-274 263-371 (519)
134 PRK14193 bifunctional 5,10-met 98.0 0.00022 4.8E-09 66.9 15.2 171 31-276 55-236 (284)
135 PRK13304 L-aspartate dehydroge 98.0 3E-05 6.5E-10 72.4 9.3 107 166-290 2-113 (265)
136 PF02882 THF_DHG_CYH_C: Tetrah 98.0 2.8E-05 6.1E-10 67.0 8.2 81 160-276 31-112 (160)
137 PRK14174 bifunctional 5,10-met 98.0 0.00023 4.9E-09 67.3 14.8 80 161-275 155-238 (295)
138 COG0345 ProC Pyrroline-5-carbo 98.0 5.7E-05 1.2E-09 70.3 10.5 106 166-293 2-114 (266)
139 COG2085 Predicted dinucleotide 98.0 3.6E-05 7.8E-10 68.7 8.8 94 166-274 2-95 (211)
140 PF03721 UDPG_MGDP_dh_N: UDP-g 98.0 4.4E-05 9.5E-10 67.5 9.2 149 166-317 1-171 (185)
141 cd05212 NAD_bind_m-THF_DH_Cycl 98.0 9.2E-05 2E-09 62.5 10.6 80 160-275 23-103 (140)
142 PRK14169 bifunctional 5,10-met 98.0 0.00042 9.1E-09 65.0 16.0 170 31-275 53-231 (282)
143 PRK14182 bifunctional 5,10-met 98.0 0.00045 9.7E-09 64.8 16.2 171 31-275 53-232 (282)
144 cd05191 NAD_bind_amino_acid_DH 98.0 6.9E-05 1.5E-09 57.7 9.0 67 161-272 19-86 (86)
145 PRK14192 bifunctional 5,10-met 97.9 4.5E-05 9.7E-10 71.9 9.5 79 161-275 155-234 (283)
146 PRK14181 bifunctional 5,10-met 97.9 0.00069 1.5E-08 63.7 17.0 171 31-275 49-232 (287)
147 cd05213 NAD_bind_Glutamyl_tRNA 97.9 3.3E-05 7.2E-10 73.8 8.3 98 163-274 176-275 (311)
148 PTZ00431 pyrroline carboxylate 97.9 3E-05 6.5E-10 72.2 7.8 97 165-287 3-103 (260)
149 PRK14167 bifunctional 5,10-met 97.9 0.00042 9E-09 65.5 15.4 171 31-275 54-236 (297)
150 PRK06141 ornithine cyclodeamin 97.9 6.3E-05 1.4E-09 72.0 10.0 95 164-272 124-219 (314)
151 TIGR02371 ala_DH_arch alanine 97.9 5.1E-05 1.1E-09 73.0 9.4 95 165-273 128-223 (325)
152 PRK14186 bifunctional 5,10-met 97.9 0.00057 1.2E-08 64.6 16.2 171 31-276 55-234 (297)
153 PRK14166 bifunctional 5,10-met 97.9 0.00059 1.3E-08 64.0 16.1 171 31-275 53-232 (282)
154 PRK14168 bifunctional 5,10-met 97.9 0.00037 8.1E-09 65.8 14.8 172 31-275 56-240 (297)
155 PRK00045 hemA glutamyl-tRNA re 97.9 4.7E-05 1E-09 75.8 9.0 97 162-273 179-281 (423)
156 PRK14180 bifunctional 5,10-met 97.9 0.00071 1.5E-08 63.5 16.2 169 31-273 54-231 (282)
157 PLN02353 probable UDP-glucose 97.9 0.00032 6.9E-09 70.8 14.5 148 166-318 2-177 (473)
158 PRK08229 2-dehydropantoate 2-r 97.8 9.9E-05 2.1E-09 71.1 9.8 120 166-293 3-127 (341)
159 PLN02616 tetrahydrofolate dehy 97.8 0.0012 2.6E-08 63.7 16.9 79 161-275 227-306 (364)
160 PRK12921 2-dehydropantoate 2-r 97.8 8.9E-05 1.9E-09 70.1 9.1 121 166-293 1-122 (305)
161 PLN02897 tetrahydrofolate dehy 97.8 0.00092 2E-08 64.2 15.7 172 31-275 109-289 (345)
162 PRK07340 ornithine cyclodeamin 97.8 0.00016 3.4E-09 69.0 10.4 96 163-274 123-219 (304)
163 PRK14185 bifunctional 5,10-met 97.8 0.0014 3.1E-08 61.7 16.2 171 31-275 54-236 (293)
164 PF02423 OCD_Mu_crystall: Orni 97.8 0.00018 4E-09 68.8 10.5 99 166-276 129-228 (313)
165 TIGR01915 npdG NADPH-dependent 97.8 0.00016 3.4E-09 65.5 9.5 105 166-277 1-106 (219)
166 KOG2380 Prephenate dehydrogena 97.8 0.00027 5.8E-09 67.1 10.9 135 165-322 52-192 (480)
167 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00026 5.7E-09 62.6 10.1 96 159-273 56-157 (197)
168 PRK08618 ornithine cyclodeamin 97.7 0.00031 6.6E-09 67.6 10.5 96 164-273 126-222 (325)
169 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00033 7.1E-09 62.1 9.9 108 161-278 24-135 (194)
170 PRK00258 aroE shikimate 5-dehy 97.6 0.00019 4.1E-09 67.5 8.4 117 162-289 120-237 (278)
171 PRK06046 alanine dehydrogenase 97.6 0.00042 9.1E-09 66.7 10.4 95 165-273 129-224 (326)
172 PRK06522 2-dehydropantoate 2-r 97.6 0.00052 1.1E-08 64.7 10.8 129 167-303 2-132 (304)
173 PRK14982 acyl-ACP reductase; P 97.6 0.00046 1E-08 66.6 10.4 102 159-279 149-253 (340)
174 PRK14177 bifunctional 5,10-met 97.6 0.00033 7.1E-09 65.7 9.0 170 31-275 56-234 (284)
175 TIGR02992 ectoine_eutC ectoine 97.6 0.00061 1.3E-08 65.6 11.1 96 164-272 128-224 (326)
176 PRK12557 H(2)-dependent methyl 97.6 0.00023 4.9E-09 68.9 8.1 100 177-287 32-132 (342)
177 COG0059 IlvC Ketol-acid reduct 97.6 0.00016 3.6E-09 67.6 6.6 96 162-274 15-110 (338)
178 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.00087 1.9E-08 61.2 11.1 119 161-294 27-156 (227)
179 TIGR02440 FadJ fatty oxidation 97.6 0.0011 2.4E-08 70.2 13.4 154 166-328 305-468 (699)
180 TIGR03376 glycerol3P_DH glycer 97.5 0.00035 7.6E-09 67.6 8.9 107 167-278 1-122 (342)
181 PRK11730 fadB multifunctional 97.5 0.001 2.2E-08 70.5 12.8 154 166-329 314-477 (715)
182 PRK14187 bifunctional 5,10-met 97.5 0.00046 9.9E-09 65.1 9.0 80 160-275 155-235 (294)
183 PTZ00345 glycerol-3-phosphate 97.5 0.00042 9.1E-09 67.6 9.0 112 166-279 12-136 (365)
184 PRK06823 ornithine cyclodeamin 97.5 0.00054 1.2E-08 65.6 9.5 94 165-272 128-222 (315)
185 PRK11154 fadJ multifunctional 97.5 0.0016 3.4E-08 69.1 13.8 154 166-328 310-473 (708)
186 PLN02516 methylenetetrahydrofo 97.5 0.00054 1.2E-08 64.7 9.0 80 160-275 162-242 (299)
187 COG0190 FolD 5,10-methylene-te 97.5 0.00042 9.2E-09 64.5 7.9 81 161-277 152-233 (283)
188 PRK12439 NAD(P)H-dependent gly 97.4 0.00046 1E-08 66.8 8.3 107 166-277 8-116 (341)
189 PRK14184 bifunctional 5,10-met 97.4 0.00067 1.4E-08 63.8 8.8 168 31-273 54-234 (286)
190 TIGR01470 cysG_Nterm siroheme 97.4 0.00042 9.2E-09 62.2 7.3 94 161-271 5-99 (205)
191 PF02153 PDH: Prephenate dehyd 97.4 0.0019 4.2E-08 60.0 11.8 127 180-322 1-133 (258)
192 PRK06407 ornithine cyclodeamin 97.4 0.0012 2.7E-08 62.8 10.4 96 165-273 117-213 (301)
193 COG2423 Predicted ornithine cy 97.4 0.0019 4.1E-08 62.1 11.7 96 165-273 130-226 (330)
194 TIGR00507 aroE shikimate 5-deh 97.4 0.0014 3E-08 61.3 10.5 111 163-289 115-229 (270)
195 TIGR02354 thiF_fam2 thiamine b 97.4 0.00066 1.4E-08 60.8 8.0 109 161-271 17-144 (200)
196 PRK08291 ectoine utilization p 97.4 0.0012 2.6E-08 63.6 10.3 95 164-271 131-226 (330)
197 COG0240 GpsA Glycerol-3-phosph 97.4 0.00084 1.8E-08 64.1 9.0 112 166-280 2-113 (329)
198 COG1064 AdhP Zn-dependent alco 97.4 0.0011 2.5E-08 63.6 9.8 93 164-271 166-258 (339)
199 PRK06718 precorrin-2 dehydroge 97.4 0.00049 1.1E-08 61.7 6.8 77 161-248 6-82 (202)
200 TIGR02441 fa_ox_alpha_mit fatt 97.3 0.0024 5.1E-08 68.0 12.8 153 166-328 336-498 (737)
201 PRK13940 glutamyl-tRNA reducta 97.3 0.0011 2.4E-08 65.7 9.7 95 162-272 178-273 (414)
202 PRK07589 ornithine cyclodeamin 97.3 0.0012 2.6E-08 64.0 9.6 96 165-272 129-225 (346)
203 TIGR02437 FadB fatty oxidation 97.3 0.0022 4.8E-08 68.0 12.3 153 166-328 314-476 (714)
204 PRK14620 NAD(P)H-dependent gly 97.3 0.0011 2.3E-08 63.6 9.2 105 167-275 2-109 (326)
205 PF13241 NAD_binding_7: Putati 97.2 0.00032 7E-09 55.9 3.9 89 162-273 4-92 (103)
206 COG1712 Predicted dinucleotide 97.2 0.00087 1.9E-08 60.3 6.7 98 167-282 2-101 (255)
207 PRK06199 ornithine cyclodeamin 97.2 0.0024 5.2E-08 62.7 10.5 102 165-275 155-262 (379)
208 COG0677 WecC UDP-N-acetyl-D-ma 97.2 0.0029 6.2E-08 61.5 10.5 155 166-330 10-189 (436)
209 PRK12549 shikimate 5-dehydroge 97.2 0.0054 1.2E-07 57.9 12.3 117 162-289 124-243 (284)
210 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0046 1E-07 56.1 11.2 115 161-291 19-144 (217)
211 PF01118 Semialdhyde_dh: Semia 97.2 0.00081 1.7E-08 55.1 5.6 97 167-274 1-99 (121)
212 COG1250 FadB 3-hydroxyacyl-CoA 97.2 0.0055 1.2E-07 58.3 11.9 154 165-329 3-167 (307)
213 PRK13301 putative L-aspartate 97.2 0.0023 5E-08 59.4 9.0 103 166-288 3-112 (267)
214 PRK00676 hemA glutamyl-tRNA re 97.1 0.0018 3.9E-08 62.4 8.5 93 162-275 171-264 (338)
215 TIGR01921 DAP-DH diaminopimela 97.1 0.0017 3.8E-08 62.1 8.2 87 166-272 4-91 (324)
216 PRK06249 2-dehydropantoate 2-r 97.1 0.002 4.2E-08 61.6 8.4 122 166-296 6-129 (313)
217 PTZ00117 malate dehydrogenase; 97.1 0.0026 5.6E-08 61.0 9.3 131 163-297 3-151 (319)
218 TIGR01763 MalateDH_bact malate 97.1 0.0019 4.1E-08 61.6 8.2 127 166-297 2-147 (305)
219 PRK12548 shikimate 5-dehydroge 97.1 0.0027 5.9E-08 60.0 9.1 85 162-247 123-210 (289)
220 COG0373 HemA Glutamyl-tRNA red 97.1 0.0027 5.8E-08 62.6 9.2 97 162-273 175-275 (414)
221 PF01408 GFO_IDH_MocA: Oxidore 97.1 0.0034 7.4E-08 50.6 8.2 67 167-246 2-72 (120)
222 KOG0023 Alcohol dehydrogenase, 97.0 0.0014 3E-08 62.1 6.2 40 164-204 181-220 (360)
223 PLN02477 glutamate dehydrogena 97.0 0.0052 1.1E-07 60.8 10.6 118 160-293 201-330 (410)
224 PRK09414 glutamate dehydrogena 97.0 0.0047 1E-07 61.7 10.1 120 161-292 228-362 (445)
225 COG0026 PurK Phosphoribosylami 97.0 0.001 2.2E-08 64.1 5.2 68 165-242 1-68 (375)
226 cd00650 LDH_MDH_like NAD-depen 97.0 0.0013 2.8E-08 61.2 5.9 129 168-300 1-150 (263)
227 PRK09310 aroDE bifunctional 3- 96.9 0.0022 4.8E-08 64.9 7.5 76 160-248 327-402 (477)
228 cd05313 NAD_bind_2_Glu_DH NAD( 96.9 0.0061 1.3E-07 56.5 9.0 122 161-292 34-172 (254)
229 PF00208 ELFV_dehydrog: Glutam 96.8 0.0081 1.7E-07 55.5 9.3 124 162-294 29-167 (244)
230 COG1748 LYS9 Saccharopine dehy 96.8 0.0039 8.4E-08 61.1 7.3 101 166-277 2-104 (389)
231 KOG2304 3-hydroxyacyl-CoA dehy 96.7 0.0015 3.3E-08 58.9 3.9 157 162-329 8-181 (298)
232 PRK13303 L-aspartate dehydroge 96.7 0.0062 1.3E-07 56.9 8.2 108 166-290 2-113 (265)
233 PRK06719 precorrin-2 dehydroge 96.7 0.0041 8.9E-08 53.5 6.4 41 160-201 8-48 (157)
234 PF01113 DapB_N: Dihydrodipico 96.7 0.0062 1.4E-07 50.1 7.3 111 167-288 2-114 (124)
235 COG0362 Gnd 6-phosphogluconate 96.7 0.015 3.2E-07 56.6 10.4 127 166-303 4-133 (473)
236 smart00859 Semialdhyde_dh Semi 96.7 0.0047 1E-07 50.4 6.2 95 167-272 1-99 (122)
237 COG1648 CysG Siroheme synthase 96.7 0.005 1.1E-07 55.5 6.7 96 161-272 8-103 (210)
238 TIGR02356 adenyl_thiF thiazole 96.7 0.0053 1.2E-07 54.9 6.9 98 161-263 17-137 (202)
239 PRK14031 glutamate dehydrogena 96.6 0.012 2.6E-07 58.7 9.9 120 160-289 223-359 (444)
240 PRK00048 dihydrodipicolinate r 96.6 0.011 2.4E-07 54.9 8.8 66 166-245 2-69 (257)
241 TIGR02964 xanthine_xdhC xanthi 96.6 0.01 2.3E-07 54.8 8.5 88 166-291 101-188 (246)
242 PF00185 OTCace: Aspartate/orn 96.6 0.033 7.1E-07 47.9 10.9 105 164-272 1-120 (158)
243 PRK12475 thiamine/molybdopteri 96.6 0.0056 1.2E-07 59.2 6.8 94 161-260 20-139 (338)
244 PRK08269 3-hydroxybutyryl-CoA 96.6 0.036 7.7E-07 53.1 12.3 109 176-287 1-128 (314)
245 PF13380 CoA_binding_2: CoA bi 96.5 0.011 2.5E-07 48.1 7.4 101 166-293 1-105 (116)
246 PRK02102 ornithine carbamoyltr 96.5 0.35 7.6E-06 46.7 18.6 106 162-271 152-272 (331)
247 PF03720 UDPG_MGDP_dh_C: UDP-g 96.5 0.016 3.5E-07 46.3 8.0 83 176-271 18-100 (106)
248 PRK01710 murD UDP-N-acetylmura 96.5 0.0088 1.9E-07 60.2 7.8 119 162-289 11-142 (458)
249 PRK14030 glutamate dehydrogena 96.4 0.02 4.4E-07 57.1 10.0 123 160-292 223-362 (445)
250 PRK04207 glyceraldehyde-3-phos 96.4 0.018 3.9E-07 55.8 9.3 80 166-246 2-88 (341)
251 PRK06223 malate dehydrogenase; 96.4 0.019 4E-07 54.6 9.2 126 166-295 3-144 (307)
252 cd05293 LDH_1 A subgroup of L- 96.4 0.012 2.7E-07 56.2 7.8 125 166-296 4-146 (312)
253 PF02558 ApbA: Ketopantoate re 96.3 0.0044 9.6E-08 52.2 4.1 121 168-295 1-123 (151)
254 TIGR01809 Shik-DH-AROM shikima 96.3 0.016 3.6E-07 54.5 8.1 79 162-247 122-201 (282)
255 PTZ00082 L-lactate dehydrogena 96.3 0.014 3E-07 56.1 7.6 129 163-295 4-153 (321)
256 PRK03515 ornithine carbamoyltr 96.3 0.34 7.3E-06 46.9 17.1 106 162-271 153-274 (336)
257 PRK14106 murD UDP-N-acetylmura 96.2 0.019 4.2E-07 57.3 8.8 119 162-288 2-132 (450)
258 TIGR00658 orni_carb_tr ornithi 96.2 0.095 2.1E-06 50.0 12.9 105 163-271 146-263 (304)
259 PRK00683 murD UDP-N-acetylmura 96.2 0.014 3E-07 58.0 7.3 108 165-288 3-126 (418)
260 PRK10637 cysG siroheme synthas 96.2 0.015 3.3E-07 58.5 7.7 96 161-272 8-103 (457)
261 PRK12562 ornithine carbamoyltr 96.1 1.2 2.6E-05 43.0 19.9 106 162-271 153-274 (334)
262 PF03435 Saccharop_dh: Sacchar 96.1 0.0088 1.9E-07 58.7 5.4 73 168-245 1-76 (386)
263 PRK01713 ornithine carbamoyltr 96.1 0.11 2.4E-06 50.2 12.6 106 162-271 153-274 (334)
264 TIGR03316 ygeW probable carbam 96.0 0.16 3.6E-06 49.4 13.8 79 162-244 167-253 (357)
265 cd00757 ThiF_MoeB_HesA_family 96.0 0.017 3.7E-07 52.6 6.6 107 161-272 17-143 (228)
266 cd05312 NAD_bind_1_malic_enz N 96.0 0.26 5.7E-06 46.3 14.4 151 160-323 20-195 (279)
267 COG1004 Ugd Predicted UDP-gluc 96.0 0.06 1.3E-06 52.7 10.3 161 166-334 1-182 (414)
268 PRK06019 phosphoribosylaminoim 96.0 0.01 2.2E-07 58.0 5.3 36 165-201 2-37 (372)
269 PRK00066 ldh L-lactate dehydro 96.0 0.024 5.3E-07 54.3 7.7 102 164-272 5-122 (315)
270 COG0569 TrkA K+ transport syst 96.0 0.015 3.2E-07 53.0 5.9 77 166-248 1-78 (225)
271 PLN02819 lysine-ketoglutarate 96.0 0.018 4E-07 63.1 7.5 75 164-246 568-658 (1042)
272 PRK08306 dipicolinate synthase 95.9 0.071 1.5E-06 50.6 10.6 107 164-293 1-117 (296)
273 cd00762 NAD_bind_malic_enz NAD 95.9 0.2 4.4E-06 46.4 13.1 152 160-323 20-196 (254)
274 cd01339 LDH-like_MDH L-lactate 95.9 0.022 4.8E-07 54.0 7.1 124 168-295 1-140 (300)
275 PTZ00079 NADP-specific glutama 95.9 0.072 1.6E-06 53.3 10.8 123 160-292 232-371 (454)
276 PRK05562 precorrin-2 dehydroge 95.9 0.027 5.8E-07 51.3 7.0 96 160-271 20-115 (223)
277 TIGR03026 NDP-sugDHase nucleot 95.9 0.048 1E-06 54.1 9.5 89 162-271 310-409 (411)
278 cd05297 GH4_alpha_glucosidase_ 95.8 0.02 4.4E-07 57.1 6.7 79 166-246 1-84 (423)
279 PRK05708 2-dehydropantoate 2-r 95.8 0.047 1E-06 52.0 8.9 125 166-296 3-127 (305)
280 PRK12749 quinate/shikimate deh 95.8 0.094 2E-06 49.6 10.6 104 162-272 121-233 (288)
281 PRK11579 putative oxidoreducta 95.7 0.037 8E-07 53.5 7.9 66 166-246 5-74 (346)
282 PRK08762 molybdopterin biosynt 95.7 0.073 1.6E-06 52.2 10.0 95 161-260 131-248 (376)
283 PF00056 Ldh_1_N: lactate/mala 95.7 0.02 4.2E-07 48.3 5.2 103 166-272 1-118 (141)
284 COG0334 GdhA Glutamate dehydro 95.7 0.05 1.1E-06 53.4 8.6 115 161-289 203-328 (411)
285 COG5322 Predicted dehydrogenas 95.7 0.04 8.6E-07 51.1 7.4 108 159-280 161-269 (351)
286 TIGR00670 asp_carb_tr aspartat 95.7 0.098 2.1E-06 49.8 10.5 108 162-277 147-269 (301)
287 PRK06444 prephenate dehydrogen 95.7 0.02 4.4E-07 51.1 5.4 60 167-275 2-62 (197)
288 PF13478 XdhC_C: XdhC Rossmann 95.6 0.021 4.5E-07 48.0 5.0 86 168-296 1-86 (136)
289 PRK11891 aspartate carbamoyltr 95.6 0.19 4.2E-06 50.0 12.4 102 162-271 238-354 (429)
290 PRK03369 murD UDP-N-acetylmura 95.6 0.046 1E-06 55.5 8.2 114 162-288 9-141 (488)
291 PRK00779 ornithine carbamoyltr 95.5 0.28 6E-06 46.8 12.9 103 162-271 149-264 (304)
292 PF02254 TrkA_N: TrkA-N domain 95.5 0.047 1E-06 43.7 6.6 89 168-269 1-93 (116)
293 TIGR00036 dapB dihydrodipicoli 95.5 0.064 1.4E-06 50.1 8.4 74 166-245 2-77 (266)
294 PRK12862 malic enzyme; Reviewe 95.5 0.51 1.1E-05 50.5 16.1 165 108-323 160-334 (763)
295 cd01492 Aos1_SUMO Ubiquitin ac 95.5 0.032 7E-07 49.7 6.1 37 161-198 17-54 (197)
296 PRK08644 thiamine biosynthesis 95.4 0.048 1E-06 49.2 7.0 37 161-198 24-61 (212)
297 PRK07688 thiamine/molybdopteri 95.4 0.034 7.4E-07 53.8 6.3 94 161-260 20-139 (339)
298 PRK07232 bifunctional malic en 95.4 0.46 1E-05 50.7 15.1 166 107-323 151-326 (752)
299 PRK02255 putrescine carbamoylt 95.4 0.12 2.7E-06 50.0 10.1 113 162-278 151-281 (338)
300 PRK09496 trkA potassium transp 95.4 0.025 5.5E-07 56.4 5.5 76 166-248 1-77 (453)
301 cd05292 LDH_2 A subgroup of L- 95.3 0.065 1.4E-06 51.1 8.0 98 167-272 2-116 (308)
302 PLN02353 probable UDP-glucose 95.3 0.093 2E-06 53.1 9.4 115 162-283 321-456 (473)
303 TIGR01850 argC N-acetyl-gamma- 95.3 0.067 1.4E-06 51.9 8.1 101 166-278 1-105 (346)
304 PRK08300 acetaldehyde dehydrog 95.2 0.1 2.2E-06 49.6 8.8 96 165-276 4-108 (302)
305 COG0169 AroE Shikimate 5-dehyd 95.2 0.24 5.2E-06 46.7 11.3 118 161-290 122-243 (283)
306 PRK02006 murD UDP-N-acetylmura 95.2 0.061 1.3E-06 54.7 7.8 37 162-199 4-40 (498)
307 PLN02527 aspartate carbamoyltr 95.2 0.18 3.9E-06 48.1 10.4 105 162-274 148-269 (306)
308 cd05291 HicDH_like L-2-hydroxy 95.2 0.065 1.4E-06 51.0 7.4 102 166-272 1-117 (306)
309 PRK06270 homoserine dehydrogen 95.1 0.14 3E-06 49.6 9.6 119 166-291 3-145 (341)
310 KOG2653 6-phosphogluconate deh 95.1 0.1 2.2E-06 50.2 8.3 128 166-304 7-137 (487)
311 PRK05690 molybdopterin biosynt 95.1 0.057 1.2E-06 49.8 6.4 106 161-271 28-153 (245)
312 PRK09880 L-idonate 5-dehydroge 95.0 0.12 2.5E-06 49.6 8.8 96 164-274 169-268 (343)
313 PLN02520 bifunctional 3-dehydr 95.0 0.15 3.2E-06 52.4 9.8 40 161-201 375-414 (529)
314 PLN02968 Probable N-acetyl-gam 95.0 0.061 1.3E-06 52.9 6.7 109 163-284 36-146 (381)
315 PF02629 CoA_binding: CoA bind 94.9 0.056 1.2E-06 42.3 5.1 66 165-245 3-71 (96)
316 PRK00421 murC UDP-N-acetylmura 94.9 0.087 1.9E-06 53.0 7.7 116 162-290 4-133 (461)
317 PRK00141 murD UDP-N-acetylmura 94.9 0.1 2.2E-06 52.8 8.2 116 162-289 12-146 (473)
318 COG0281 SfcA Malic enzyme [Ene 94.8 0.46 1E-05 46.9 12.2 172 107-323 165-343 (432)
319 PRK12861 malic enzyme; Reviewe 94.8 0.77 1.7E-05 49.0 14.8 163 109-323 157-330 (764)
320 COG1004 Ugd Predicted UDP-gluc 94.8 0.13 2.8E-06 50.4 8.3 89 163-270 308-406 (414)
321 PRK00856 pyrB aspartate carbam 94.8 0.22 4.7E-06 47.5 9.8 93 162-271 153-261 (305)
322 cd05188 MDR Medium chain reduc 94.8 0.32 6.9E-06 43.9 10.7 99 163-276 133-236 (271)
323 PRK02472 murD UDP-N-acetylmura 94.8 0.22 4.7E-06 49.7 10.3 118 162-288 2-132 (447)
324 cd01483 E1_enzyme_family Super 94.8 0.13 2.8E-06 43.0 7.3 31 167-198 1-32 (143)
325 PRK14027 quinate/shikimate deh 94.8 0.28 6.2E-06 46.2 10.4 119 162-289 124-245 (283)
326 PRK01438 murD UDP-N-acetylmura 94.7 0.1 2.2E-06 52.8 7.8 120 160-288 11-146 (480)
327 COG0771 MurD UDP-N-acetylmuram 94.7 0.056 1.2E-06 54.1 5.7 134 163-305 5-159 (448)
328 cd01487 E1_ThiF_like E1_ThiF_l 94.7 0.081 1.8E-06 46.2 6.1 90 167-261 1-112 (174)
329 PRK01390 murD UDP-N-acetylmura 94.6 0.088 1.9E-06 52.9 7.1 112 162-288 6-138 (460)
330 PLN02342 ornithine carbamoyltr 94.6 0.74 1.6E-05 44.7 13.1 103 162-271 191-306 (348)
331 PLN02948 phosphoribosylaminoim 94.6 0.065 1.4E-06 55.6 6.2 38 162-200 19-56 (577)
332 COG0057 GapA Glyceraldehyde-3- 94.6 0.09 2E-06 50.2 6.5 45 166-210 2-47 (335)
333 PRK11064 wecC UDP-N-acetyl-D-m 94.6 0.19 4E-06 50.1 9.1 71 160-246 315-396 (415)
334 PRK09496 trkA potassium transp 94.6 0.18 3.9E-06 50.3 9.1 98 163-271 229-330 (453)
335 TIGR02355 moeB molybdopterin s 94.6 0.093 2E-06 48.3 6.5 99 161-261 20-138 (240)
336 PRK06153 hypothetical protein; 94.5 0.1 2.2E-06 51.2 6.8 107 162-275 173-301 (393)
337 PRK07806 short chain dehydroge 94.4 0.2 4.3E-06 45.3 8.3 38 162-200 3-41 (248)
338 TIGR03215 ac_ald_DH_ac acetald 94.4 0.19 4.1E-06 47.5 8.2 90 166-271 2-94 (285)
339 PRK04284 ornithine carbamoyltr 94.4 0.33 7.1E-06 46.9 10.0 106 162-271 152-273 (332)
340 PRK10669 putative cation:proto 94.4 0.087 1.9E-06 54.4 6.5 91 166-269 418-512 (558)
341 PRK00436 argC N-acetyl-gamma-g 94.4 0.1 2.2E-06 50.6 6.6 101 166-279 3-106 (343)
342 PLN02602 lactate dehydrogenase 94.3 0.22 4.7E-06 48.5 8.7 101 166-272 38-154 (350)
343 PLN02272 glyceraldehyde-3-phos 94.3 0.079 1.7E-06 52.5 5.7 42 166-207 86-128 (421)
344 TIGR01381 E1_like_apg7 E1-like 94.3 0.23 4.9E-06 51.8 9.1 62 119-197 307-370 (664)
345 PRK14804 ornithine carbamoyltr 94.3 2.8 6.1E-05 40.1 16.1 76 162-244 150-226 (311)
346 PRK08192 aspartate carbamoyltr 94.3 0.31 6.7E-06 47.2 9.6 76 161-243 155-233 (338)
347 TIGR01161 purK phosphoribosyla 94.3 0.061 1.3E-06 52.1 4.8 33 167-200 1-33 (352)
348 PF00044 Gp_dh_N: Glyceraldehy 94.3 0.07 1.5E-06 45.6 4.6 44 167-210 2-46 (151)
349 PRK05086 malate dehydrogenase; 94.2 0.19 4.1E-06 48.1 8.0 104 166-275 1-121 (312)
350 COG3288 PntA NAD/NADP transhyd 94.2 0.14 3E-06 48.5 6.8 109 160-272 159-281 (356)
351 PRK04690 murD UDP-N-acetylmura 94.2 0.11 2.4E-06 52.5 6.7 116 163-288 6-139 (468)
352 COG0673 MviM Predicted dehydro 94.2 0.17 3.7E-06 48.2 7.7 68 166-246 4-77 (342)
353 TIGR01532 E4PD_g-proteo D-eryt 94.2 0.18 3.9E-06 48.6 7.6 44 167-211 1-48 (325)
354 PRK05600 thiamine biosynthesis 94.1 0.16 3.6E-06 49.7 7.5 96 161-261 37-155 (370)
355 PRK03659 glutathione-regulated 94.1 0.13 2.8E-06 53.7 7.2 96 165-273 400-499 (601)
356 cd01486 Apg7 Apg7 is an E1-lik 94.1 0.15 3.3E-06 48.3 6.9 31 167-198 1-32 (307)
357 COG2344 AT-rich DNA-binding pr 94.0 0.058 1.3E-06 47.4 3.5 67 167-246 86-156 (211)
358 cd00300 LDH_like L-lactate deh 93.8 0.24 5.3E-06 47.0 7.9 100 168-272 1-115 (300)
359 cd08230 glucose_DH Glucose deh 93.8 0.31 6.8E-06 46.9 8.8 95 163-273 171-270 (355)
360 PRK05597 molybdopterin biosynt 93.8 0.15 3.4E-06 49.6 6.6 97 161-263 24-144 (355)
361 PTZ00325 malate dehydrogenase; 93.8 0.29 6.3E-06 47.0 8.3 106 162-275 5-128 (321)
362 PRK04308 murD UDP-N-acetylmura 93.8 0.24 5.1E-06 49.6 8.0 119 162-289 2-135 (445)
363 cd05294 LDH-like_MDH_nadp A la 93.7 0.33 7.1E-06 46.3 8.6 124 166-295 1-146 (309)
364 cd05290 LDH_3 A subgroup of L- 93.7 0.2 4.4E-06 47.8 7.0 73 167-245 1-77 (307)
365 PRK15182 Vi polysaccharide bio 93.7 0.38 8.1E-06 48.1 9.2 96 160-276 309-416 (425)
366 TIGR01761 thiaz-red thiazoliny 93.6 0.29 6.4E-06 47.4 8.2 112 166-294 4-119 (343)
367 PRK06349 homoserine dehydrogen 93.6 0.28 6E-06 49.0 8.2 108 166-291 4-124 (426)
368 PF13460 NAD_binding_10: NADH( 93.6 0.098 2.1E-06 45.1 4.4 72 168-249 1-73 (183)
369 PRK08223 hypothetical protein; 93.6 0.24 5.1E-06 46.8 7.2 100 161-261 23-143 (287)
370 PRK13814 pyrB aspartate carbam 93.5 0.56 1.2E-05 44.9 9.7 67 162-243 154-224 (310)
371 PRK10206 putative oxidoreducta 93.5 0.21 4.6E-06 48.3 7.0 68 167-247 3-75 (344)
372 TIGR01851 argC_other N-acetyl- 93.3 0.31 6.7E-06 46.5 7.5 77 167-272 3-80 (310)
373 TIGR02717 AcCoA-syn-alpha acet 93.3 0.52 1.1E-05 47.4 9.6 110 162-294 4-125 (447)
374 PRK03562 glutathione-regulated 93.2 0.22 4.9E-06 52.1 7.1 93 165-270 400-496 (621)
375 PF05368 NmrA: NmrA-like famil 93.2 0.24 5.2E-06 44.6 6.5 74 168-247 1-75 (233)
376 PRK07411 hypothetical protein; 93.2 0.23 5.1E-06 49.0 6.8 102 161-264 34-155 (390)
377 PRK06701 short chain dehydroge 93.1 0.3 6.5E-06 45.8 7.2 39 161-200 42-81 (290)
378 TIGR03366 HpnZ_proposed putati 93.1 0.36 7.7E-06 44.9 7.6 37 164-201 120-157 (280)
379 TIGR01772 MDH_euk_gproteo mala 93.1 0.32 6.9E-06 46.6 7.4 99 167-273 1-117 (312)
380 PRK06392 homoserine dehydrogen 93.1 0.3 6.4E-06 47.1 7.2 121 167-289 2-134 (326)
381 cd01337 MDH_glyoxysomal_mitoch 93.0 0.37 8E-06 46.1 7.6 100 166-274 1-119 (310)
382 TIGR01202 bchC 2-desacetyl-2-h 93.0 0.33 7.2E-06 45.9 7.3 88 164-273 144-232 (308)
383 PRK12937 short chain dehydroge 92.9 0.43 9.3E-06 42.9 7.7 37 162-199 2-39 (245)
384 PRK04148 hypothetical protein; 92.9 0.34 7.5E-06 40.5 6.4 36 164-201 16-51 (134)
385 PRK04523 N-acetylornithine car 92.9 1.2 2.7E-05 43.0 11.1 78 163-244 166-252 (335)
386 COG0078 ArgF Ornithine carbamo 92.8 3.4 7.4E-05 39.2 13.4 105 163-271 151-269 (310)
387 cd08239 THR_DH_like L-threonin 92.7 0.52 1.1E-05 44.8 8.4 96 164-274 163-264 (339)
388 PRK03803 murD UDP-N-acetylmura 92.7 0.35 7.5E-06 48.4 7.3 114 165-288 6-132 (448)
389 PF04016 DUF364: Domain of unk 92.6 0.28 6.1E-06 41.7 5.6 85 162-272 8-95 (147)
390 PRK03806 murD UDP-N-acetylmura 92.5 0.42 9.1E-06 47.6 7.7 114 162-288 3-129 (438)
391 PF03447 NAD_binding_3: Homose 92.4 0.15 3.3E-06 41.1 3.6 87 172-277 1-95 (117)
392 COG1893 ApbA Ketopantoate redu 92.4 0.64 1.4E-05 44.4 8.4 152 166-325 1-154 (307)
393 PRK06128 oxidoreductase; Provi 92.4 0.5 1.1E-05 44.4 7.6 36 162-198 52-88 (300)
394 PRK07984 enoyl-(acyl carrier p 92.1 0.57 1.2E-05 43.3 7.6 35 163-198 4-41 (262)
395 PRK11863 N-acetyl-gamma-glutam 92.1 0.42 9.2E-06 45.7 6.8 77 166-272 3-81 (313)
396 PF00899 ThiF: ThiF family; I 92.1 0.16 3.5E-06 42.0 3.5 34 165-199 2-36 (135)
397 PLN02819 lysine-ketoglutarate 92.1 0.51 1.1E-05 52.1 8.1 107 163-272 201-338 (1042)
398 smart00846 Gp_dh_N Glyceraldeh 92.0 0.39 8.4E-06 40.9 5.8 31 167-197 2-33 (149)
399 PLN00106 malate dehydrogenase 91.9 0.48 1E-05 45.6 7.0 125 164-295 17-164 (323)
400 PLN02586 probable cinnamyl alc 91.9 0.69 1.5E-05 44.8 8.2 96 164-273 183-279 (360)
401 PF03949 Malic_M: Malic enzyme 91.9 1.2 2.5E-05 41.4 9.1 161 123-322 4-195 (255)
402 KOG2711 Glycerol-3-phosphate d 91.9 0.71 1.5E-05 44.4 7.8 164 162-327 18-221 (372)
403 TIGR01771 L-LDH-NAD L-lactate 91.9 0.54 1.2E-05 44.7 7.2 98 170-272 1-113 (299)
404 PRK07877 hypothetical protein; 91.9 0.31 6.8E-06 51.8 6.1 98 161-261 103-220 (722)
405 PF00070 Pyr_redox: Pyridine n 91.8 0.32 7E-06 36.3 4.5 33 167-200 1-33 (80)
406 PRK15076 alpha-galactosidase; 91.7 0.7 1.5E-05 46.3 8.1 77 166-246 2-85 (431)
407 cd08237 ribitol-5-phosphate_DH 91.6 0.88 1.9E-05 43.6 8.5 90 164-273 163-257 (341)
408 cd08281 liver_ADH_like1 Zinc-d 91.6 0.83 1.8E-05 44.3 8.4 95 164-273 191-291 (371)
409 COG0039 Mdh Malate/lactate deh 91.6 0.23 4.9E-06 47.5 4.2 80 166-251 1-87 (313)
410 PF05222 AlaDh_PNT_N: Alanine 91.6 2.2 4.8E-05 35.6 9.8 99 179-301 18-119 (136)
411 TIGR02822 adh_fam_2 zinc-bindi 91.6 0.55 1.2E-05 44.9 7.0 91 164-273 165-255 (329)
412 COG4007 Predicted dehydrogenas 91.5 0.37 8E-06 44.6 5.3 96 177-286 33-128 (340)
413 PLN02214 cinnamoyl-CoA reducta 91.4 0.62 1.3E-05 44.8 7.2 83 162-245 7-90 (342)
414 TIGR03201 dearomat_had 6-hydro 91.4 0.78 1.7E-05 44.1 7.9 37 164-201 166-202 (349)
415 PRK07523 gluconate 5-dehydroge 91.3 0.52 1.1E-05 42.8 6.3 39 162-201 7-46 (255)
416 COG0540 PyrB Aspartate carbamo 91.2 0.63 1.4E-05 44.1 6.7 74 162-243 155-231 (316)
417 PRK12550 shikimate 5-dehydroge 91.2 0.7 1.5E-05 43.3 7.1 36 165-201 122-158 (272)
418 PRK12742 oxidoreductase; Provi 91.2 1.4 3.1E-05 39.3 8.9 36 162-198 3-39 (237)
419 TIGR01758 MDH_euk_cyt malate d 91.2 0.71 1.5E-05 44.4 7.2 108 167-281 1-132 (324)
420 TIGR03451 mycoS_dep_FDH mycoth 91.1 1.1 2.4E-05 43.2 8.6 95 164-273 176-277 (358)
421 PRK07904 short chain dehydroge 91.0 0.94 2E-05 41.5 7.7 38 164-201 7-45 (253)
422 cd05283 CAD1 Cinnamyl alcohol 91.0 1 2.2E-05 42.9 8.2 96 164-274 169-265 (337)
423 PRK02261 methylaspartate mutas 90.9 3.3 7.2E-05 34.6 10.3 112 13-127 1-130 (137)
424 KOG0022 Alcohol dehydrogenase, 90.9 0.33 7E-06 46.3 4.5 39 163-202 191-230 (375)
425 TIGR02853 spore_dpaA dipicolin 90.8 1.8 3.9E-05 40.9 9.5 107 165-294 1-117 (287)
426 PRK13376 pyrB bifunctional asp 90.6 1.2 2.5E-05 45.7 8.5 103 162-272 171-293 (525)
427 PLN02514 cinnamyl-alcohol dehy 90.6 1.2 2.6E-05 43.0 8.4 97 163-273 179-276 (357)
428 PRK07200 aspartate/ornithine c 90.6 1 2.2E-05 44.6 7.8 79 162-244 184-270 (395)
429 TIGR01087 murD UDP-N-acetylmur 90.5 1.4 3E-05 43.8 9.0 116 167-290 1-128 (433)
430 cd08293 PTGR2 Prostaglandin re 90.5 1.4 3E-05 41.9 8.7 94 165-273 155-255 (345)
431 PRK06114 short chain dehydroge 90.4 0.62 1.3E-05 42.4 5.9 38 162-200 5-43 (254)
432 PRK08324 short chain dehydroge 90.4 0.72 1.6E-05 48.9 7.1 40 161-201 418-458 (681)
433 COG2185 Sbm Methylmalonyl-CoA 90.4 6 0.00013 33.4 11.2 118 13-133 10-139 (143)
434 PRK02705 murD UDP-N-acetylmura 90.3 0.9 2E-05 45.5 7.5 114 167-288 2-133 (459)
435 PLN02178 cinnamyl-alcohol dehy 90.3 1.1 2.4E-05 43.7 8.0 36 164-200 178-213 (375)
436 CHL00194 ycf39 Ycf39; Provisio 90.3 0.65 1.4E-05 44.0 6.1 72 166-245 1-73 (317)
437 cd08296 CAD_like Cinnamyl alco 90.2 1.8 3.8E-05 41.2 9.0 95 164-273 163-260 (333)
438 PRK07231 fabG 3-ketoacyl-(acyl 90.1 0.82 1.8E-05 41.1 6.4 39 162-201 2-41 (251)
439 cd08234 threonine_DH_like L-th 90.1 1.2 2.7E-05 41.9 7.9 98 163-275 158-260 (334)
440 PRK08664 aspartate-semialdehyd 90.0 1.3 2.9E-05 42.9 8.1 33 166-198 4-37 (349)
441 PRK05866 short chain dehydroge 89.9 0.91 2E-05 42.6 6.8 41 160-201 35-76 (293)
442 PRK06841 short chain dehydroge 89.9 2.4 5.1E-05 38.3 9.4 38 162-200 12-50 (255)
443 PRK06172 short chain dehydroge 89.8 0.78 1.7E-05 41.5 6.0 39 162-201 4-43 (253)
444 PLN03209 translocon at the inn 89.8 0.91 2E-05 47.0 7.0 38 163-201 78-116 (576)
445 PRK04663 murD UDP-N-acetylmura 89.7 1.2 2.6E-05 44.5 7.7 114 163-288 4-132 (438)
446 PRK08328 hypothetical protein; 89.6 0.46 1E-05 43.4 4.3 107 161-272 23-150 (231)
447 cd01336 MDH_cytoplasmic_cytoso 89.6 0.85 1.8E-05 43.9 6.3 101 167-272 4-128 (325)
448 TIGR01759 MalateDH-SF1 malate 89.6 1.2 2.6E-05 42.9 7.3 107 167-280 5-135 (323)
449 COG1063 Tdh Threonine dehydrog 89.6 1.5 3.3E-05 42.5 8.1 93 167-274 171-271 (350)
450 PLN02740 Alcohol dehydrogenase 89.5 1.8 3.9E-05 42.2 8.8 38 163-201 197-235 (381)
451 PRK08374 homoserine dehydrogen 89.5 0.92 2E-05 43.9 6.5 130 166-304 3-156 (336)
452 PRK01368 murD UDP-N-acetylmura 89.4 0.52 1.1E-05 47.5 4.9 112 163-288 4-128 (454)
453 PRK10537 voltage-gated potassi 89.4 1.2 2.6E-05 44.1 7.3 90 165-269 240-333 (393)
454 PTZ00188 adrenodoxin reductase 89.4 2.5 5.3E-05 43.1 9.6 85 161-245 35-135 (506)
455 KOG2741 Dimeric dihydrodiol de 89.3 1.6 3.6E-05 42.0 7.8 70 166-246 7-82 (351)
456 cd01488 Uba3_RUB Ubiquitin act 89.3 1.5 3.2E-05 41.6 7.6 106 167-275 1-131 (291)
457 PLN00112 malate dehydrogenase 89.3 2.8 6.2E-05 42.1 9.9 113 166-285 101-237 (444)
458 PRK14874 aspartate-semialdehyd 89.2 1.2 2.7E-05 42.9 7.2 90 165-273 1-95 (334)
459 PRK06196 oxidoreductase; Provi 89.2 0.97 2.1E-05 42.8 6.4 40 161-201 22-62 (315)
460 PLN02427 UDP-apiose/xylose syn 89.2 0.86 1.9E-05 44.5 6.1 41 159-200 8-50 (386)
461 PRK14573 bifunctional D-alanyl 89.1 1.1 2.4E-05 48.5 7.4 112 166-290 5-130 (809)
462 PRK12809 putative oxidoreducta 89.1 1.4 2.9E-05 46.5 7.9 36 163-199 308-343 (639)
463 PLN02358 glyceraldehyde-3-phos 89.0 0.74 1.6E-05 44.6 5.4 42 166-207 6-48 (338)
464 PRK08265 short chain dehydroge 89.0 1.4 3.1E-05 40.2 7.2 38 162-200 3-41 (261)
465 PRK10309 galactitol-1-phosphat 89.0 1.9 4.2E-05 41.1 8.4 94 164-272 160-260 (347)
466 cd08245 CAD Cinnamyl alcohol d 89.0 2.3 4.9E-05 40.1 8.8 96 163-273 161-257 (330)
467 cd01338 MDH_choloroplast_like 88.9 0.87 1.9E-05 43.8 5.9 112 166-283 3-137 (322)
468 cd08233 butanediol_DH_like (2R 88.9 2.7 5.9E-05 40.1 9.3 95 164-273 172-273 (351)
469 TIGR02825 B4_12hDH leukotriene 88.8 2.1 4.5E-05 40.5 8.4 95 164-274 138-239 (325)
470 PRK15057 UDP-glucose 6-dehydro 88.8 1.2 2.7E-05 43.9 6.9 65 163-245 294-368 (388)
471 PRK12747 short chain dehydroge 88.7 2.1 4.5E-05 38.7 8.0 34 163-197 2-36 (252)
472 PLN02383 aspartate semialdehyd 88.6 1.1 2.4E-05 43.5 6.4 88 164-272 6-100 (344)
473 PRK08217 fabG 3-ketoacyl-(acyl 88.6 0.81 1.8E-05 41.1 5.2 39 162-201 2-41 (253)
474 cd08277 liver_alcohol_DH_like 88.5 1.4 3.1E-05 42.6 7.1 38 163-201 183-221 (365)
475 TIGR01142 purT phosphoribosylg 88.5 0.56 1.2E-05 45.6 4.3 34 167-201 1-34 (380)
476 cd08260 Zn_ADH6 Alcohol dehydr 88.4 2.4 5.1E-05 40.3 8.5 96 164-274 165-266 (345)
477 PLN03154 putative allyl alcoho 88.4 2.3 5.1E-05 40.9 8.5 95 164-273 158-259 (348)
478 TIGR02818 adh_III_F_hyde S-(hy 88.3 2.4 5.2E-05 41.1 8.6 37 164-201 185-222 (368)
479 PRK13529 malate dehydrogenase; 88.3 14 0.0003 38.2 14.1 186 107-323 261-472 (563)
480 cd01485 E1-1_like Ubiquitin ac 88.2 0.62 1.4E-05 41.5 4.0 37 161-198 15-52 (198)
481 COG0677 WecC UDP-N-acetyl-D-ma 88.1 2.3 5E-05 41.9 8.0 95 160-274 317-421 (436)
482 TIGR01832 kduD 2-deoxy-D-gluco 88.0 1.5 3.3E-05 39.4 6.7 37 162-199 2-39 (248)
483 PLN03075 nicotianamine synthas 88.0 1.5 3.2E-05 41.7 6.6 102 164-271 123-232 (296)
484 cd08301 alcohol_DH_plants Plan 88.0 2.6 5.6E-05 40.7 8.6 37 164-201 187-224 (369)
485 PRK12769 putative oxidoreducta 87.9 2 4.3E-05 45.3 8.3 36 163-199 325-360 (654)
486 PRK10083 putative oxidoreducta 87.9 2.7 5.7E-05 39.8 8.5 97 163-274 159-261 (339)
487 cd08295 double_bond_reductase_ 87.9 2.7 5.8E-05 40.0 8.6 94 164-273 151-252 (338)
488 PRK08589 short chain dehydroge 87.9 1.1 2.5E-05 41.2 5.8 36 162-198 3-39 (272)
489 PLN02657 3,8-divinyl protochlo 87.7 1.1 2.5E-05 44.0 6.0 41 159-200 54-95 (390)
490 PRK12826 3-ketoacyl-(acyl-carr 87.7 2.2 4.7E-05 38.3 7.4 38 162-200 3-41 (251)
491 PRK06728 aspartate-semialdehyd 87.5 2.2 4.8E-05 41.5 7.6 88 165-272 5-99 (347)
492 KOG4230 C1-tetrahydrofolate sy 87.4 2.3 5.1E-05 43.6 7.8 83 161-279 158-241 (935)
493 TIGR03649 ergot_EASG ergot alk 87.4 1.3 2.9E-05 41.0 6.0 71 167-248 1-79 (285)
494 cd08255 2-desacetyl-2-hydroxye 87.3 2.3 5E-05 38.9 7.5 94 164-275 97-193 (277)
495 PRK07424 bifunctional sterol d 87.2 1.5 3.2E-05 43.6 6.4 79 161-244 174-253 (406)
496 TIGR01082 murC UDP-N-acetylmur 87.2 1.7 3.7E-05 43.5 6.9 110 168-290 2-125 (448)
497 PRK05442 malate dehydrogenase; 87.0 1.2 2.7E-05 42.8 5.6 110 166-281 5-137 (326)
498 PRK05717 oxidoreductase; Valid 87.0 3.7 8E-05 37.2 8.6 38 162-200 7-45 (255)
499 cd05298 GH4_GlvA_pagL_like Gly 87.0 2.7 5.8E-05 42.2 8.1 126 166-294 1-165 (437)
500 PRK08040 putative semialdehyde 87.0 1.7 3.7E-05 42.1 6.5 90 164-272 3-97 (336)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.2e-78 Score=585.33 Aligned_cols=341 Identities=95% Similarity=1.421 Sum_probs=292.4
Q ss_pred CCCceeeEEeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHH
Q 019328 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 80 (342)
|+|||+|.+-+|+++++|+++.++++....+.|++.+++++.....+...+++++.+.+.+++|++++...+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999999876434577776666776433223346788998887545999998877789999999
Q ss_pred HhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019328 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (342)
Q Consensus 81 ~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g 160 (342)
+++++++|+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+....|
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99987779999999999999999999999999999999999999999999999999999999999999998886544567
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++|+||||||||+|+||+.+|++++++|||+|++|||+.+...+.+...++..++..+.....+....+|++++++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 89999999999999999999999634999999999998754322111112111111111111112235899999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPH 320 (342)
++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhhc
Q 019328 321 IASASKWTREGMATLAALNVL 341 (342)
Q Consensus 321 ia~~t~~~~~~~~~~~~~ni~ 341 (342)
+||.|.++++++...+++||.
T Consensus 321 iag~T~e~~~~~~~~~~~ni~ 341 (386)
T PLN02306 321 IASASKWTREGMATLAALNVL 341 (386)
T ss_pred cccCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999984
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-74 Score=544.05 Aligned_cols=302 Identities=37% Similarity=0.511 Sum_probs=265.2
Q ss_pred CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328 13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (342)
Q Consensus 13 ~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~ 92 (342)
+++++++.+.++.+..+ +.+.+. .+.++.. ....+++++.+.+. ++|++++ +.+++++++++.+++| |+|++
T Consensus 1 ~~~~~vl~~~~~~~~~~-~~l~~~-~~~~~~~--~~~~~~~~l~~~~~-~~d~~~~-~~~~v~~~~l~~~~~L--k~I~~ 72 (324)
T COG0111 1 KMMIKVLVTDPLAPDAL-EELLAA-YDVEVPD--GPDLDEEELLEALA-DADALIV-SVTPVTEEVLAAAPNL--KAIGR 72 (324)
T ss_pred CCcceeeccCccCHHHH-HHHHhc-ccccccc--ccccchHHHHhhcc-cCcEEEE-ecCCCCHHHHhhCCCc--eEEEE
Confidence 35788999999887654 455444 3333221 22346677887777 4999988 7789999999999987 99999
Q ss_pred cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (342)
Q Consensus 93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG 172 (342)
.|+|+||||+++++++||.|+|+|+.|+.+||||++++||+++|+++.+++.+++|.|.. ..+.|.+|+||||||||
T Consensus 73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG 149 (324)
T COG0111 73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIG 149 (324)
T ss_pred ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999998863 33567899999999999
Q ss_pred cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (342)
Q Consensus 173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~ 252 (342)
+|+||+.+|+++ ++|||+|++|||+....... ..+.....+|++++++||||++|+|+|++|+|
T Consensus 150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 999999999996 89999999999976542111 11223457899999999999999999999999
Q ss_pred ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCCCcHHHHHH
Q 019328 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 331 (342)
Q Consensus 253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~~t~~~~~~ 331 (342)
|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||.|.+++++
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~ 293 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 6999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 019328 332 MATLAALNVL 341 (342)
Q Consensus 332 ~~~~~~~ni~ 341 (342)
+..++++|+.
T Consensus 294 ~~~~~~~~i~ 303 (324)
T COG0111 294 VAEIVAENIV 303 (324)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=7e-73 Score=537.40 Aligned_cols=303 Identities=41% Similarity=0.571 Sum_probs=264.0
Q ss_pred CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g 94 (342)
|++++.+.++++. ..+.+.+. ++++......... . ++.+... ++|++++....++++++++++|+| |+|+..|
T Consensus 2 k~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~-~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~~ 74 (324)
T COG1052 2 KIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTPD-T-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATRS 74 (324)
T ss_pred CcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCccc-h-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEec
Confidence 5567888888874 45666554 6665543321122 2 5566665 599999988889999999999987 9999999
Q ss_pred cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCC-CCCcccccccCCCEEEEEcc
Q 019328 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGA 173 (342)
Q Consensus 95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w-~~~~~~g~~l~gktvGIiG~ 173 (342)
+||||||+++|+++||.|+|+|++++++||||+++|||++.|++.++++++|+|.|..| ......|.+++|||+||||+
T Consensus 75 ~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~ 154 (324)
T COG1052 75 AGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL 154 (324)
T ss_pred cccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999866 23345688999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (342)
Q Consensus 174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l 253 (342)
|+||+++|+++ ++|||+|+||||++.+..+. ...+ .+.++++++++||+|++|||+|++|+||
T Consensus 155 GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~---------------~~~~-~y~~l~ell~~sDii~l~~Plt~~T~hL 217 (324)
T COG1052 155 GRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK---------------ELGA-RYVDLDELLAESDIISLHCPLTPETRHL 217 (324)
T ss_pred CHHHHHHHHHH-hcCCCEEEEECCCCChHHHh---------------hcCc-eeccHHHHHHhCCEEEEeCCCChHHhhh
Confidence 99999999997 79999999999997632221 0112 2346999999999999999999999999
Q ss_pred cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCc---eEEcCCCCCCcHHHH
Q 019328 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWTR 329 (342)
Q Consensus 254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~n---vi~TPHia~~t~~~~ 329 (342)
||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||.+ ++||++++| |++|||+|++|.+++
T Consensus 218 in~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~ 297 (324)
T COG1052 218 INAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEAR 297 (324)
T ss_pred cCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999985 678888777 999999999999999
Q ss_pred HHHHHHHHhhhc
Q 019328 330 EGMATLAALNVL 341 (342)
Q Consensus 330 ~~~~~~~~~ni~ 341 (342)
.+|+..+++|+.
T Consensus 298 ~~m~~~~~~nl~ 309 (324)
T COG1052 298 KAMAELALENLE 309 (324)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 4
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.9e-72 Score=536.40 Aligned_cols=304 Identities=34% Similarity=0.512 Sum_probs=263.7
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (342)
Q Consensus 14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~ 93 (342)
+++||+++.++++ ...+.|++. +++.... .....+.+++.+.+. ++|+++++. .++++++++++|+| |+|+++
T Consensus 1 ~~~~vl~~~~~~~-~~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~ 73 (323)
T PRK15409 1 MKPSVILYKALPD-DLLQRLEEH-FTVTQVA-NLSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI 73 (323)
T ss_pred CCceEEEeCCCCH-HHHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence 3578999998875 345677653 4554332 112346678888887 599998764 47999999999997 999999
Q ss_pred ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (342)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~ 173 (342)
|+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+
T Consensus 74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~ 153 (323)
T PRK15409 74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM 153 (323)
T ss_pred ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999864422223578999999999999
Q ss_pred ChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328 174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (342)
Q Consensus 174 G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~ 252 (342)
|+||+.+|+++ + +|||+|++|||+....... ..+. ...++++++++||+|++|+|+|++|+|
T Consensus 154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 99999999996 7 9999999999985432110 0111 245999999999999999999999999
Q ss_pred ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHH
Q 019328 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG 331 (342)
Q Consensus 253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~ 331 (342)
+||++.|++||||++|||+|||++||++||++||++|+|+|||||||++||++ ++|||++|||++|||+||.|.+++++
T Consensus 217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~ 296 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296 (323)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 57999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 019328 332 MATLAALNVL 341 (342)
Q Consensus 332 ~~~~~~~ni~ 341 (342)
+...+++||.
T Consensus 297 ~~~~~~~ni~ 306 (323)
T PRK15409 297 MAACAVDNLI 306 (323)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-70 Score=521.23 Aligned_cols=294 Identities=29% Similarity=0.430 Sum_probs=252.6
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 17 kvl~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g 94 (342)
||++..+ +++ ...+.|++.+ ++.... ..+++++.+.+. ++|++++. ..++++++++++|+| |+|++.|
T Consensus 2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~----~~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~ 71 (311)
T PRK08410 2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP----TTSPEEVIERIK-DANIIITN-KVVIDKEVLSQLPNL--KLICITA 71 (311)
T ss_pred eEEEEecCCCCh-hhHHHHhhCc-eEEEeC----CCCHHHHHHHhC-CCCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence 4555444 343 2346676543 554322 125678888877 49998876 568999999999987 9999999
Q ss_pred cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCc---ccccccCCCEEEEE
Q 019328 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI 171 (342)
Q Consensus 95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~---~~g~~l~gktvGIi 171 (342)
+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..+.... ..+++|+|||||||
T Consensus 72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi 151 (311)
T PRK08410 72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII 151 (311)
T ss_pred cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999986432111 12479999999999
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (342)
Q Consensus 172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~ 251 (342)
|+|+||+.+|+++ ++|||+|++|||+..... .++ ...++++++++||+|++|+|+|++|+
T Consensus 152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence 9999999999997 899999999999753210 011 24689999999999999999999999
Q ss_pred cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCC---CceEEcCCCCCCcHH
Q 019328 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASASKW 327 (342)
Q Consensus 252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~---~nvi~TPHia~~t~~ 327 (342)
|+||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||++. +|||++ |||++|||+||.|.+
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e 290 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE 290 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999 9999999999864 799987 899999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 019328 328 TREGMATLAALNVL 341 (342)
Q Consensus 328 ~~~~~~~~~~~ni~ 341 (342)
+++++...+++|+.
T Consensus 291 ~~~~~~~~~~~nl~ 304 (311)
T PRK08410 291 ARKTLIEKVKENIK 304 (311)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999984
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-70 Score=537.40 Aligned_cols=304 Identities=28% Similarity=0.384 Sum_probs=269.2
Q ss_pred EeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCC
Q 019328 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG 87 (342)
Q Consensus 9 ~~~~~~~~kvl~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~ 87 (342)
++.|++|+||+++.++++. ..+.|++.++ ++.... ...+++++.+.+. ++|+++++..+++++++++++|+|
T Consensus 4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L-- 76 (409)
T PRK11790 4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIK-DAHFIGIRSRTQLTEEVLAAAEKL-- 76 (409)
T ss_pred CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcC-CCCEEEEeCCCCCCHHHHhhCCCC--
Confidence 6789999999999877653 4567776666 665432 2346788887777 599998877778999999999987
Q ss_pred ceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 019328 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (342)
Q Consensus 88 k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gkt 167 (342)
|+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+ ...|++|.|||
T Consensus 77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~L~gkt 153 (409)
T PRK11790 77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS---AAGSFEVRGKT 153 (409)
T ss_pred eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc---ccCcccCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999988643 23568999999
Q ss_pred EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt 247 (342)
|||||+|+||+.+|+++ ++|||+|++|||+..... . ......++++++++||+|++|+|+|
T Consensus 154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~----------------~--~~~~~~~l~ell~~sDiVslh~Plt 214 (409)
T PRK11790 154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL----------------G--NARQVGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc----------------C--CceecCCHHHHHhhCCEEEEcCCCC
Confidence 99999999999999997 799999999998643210 0 1123458999999999999999999
Q ss_pred cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-----CCccCCCceEEcCCCC
Q 019328 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIA 322 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvi~TPHia 322 (342)
++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|
T Consensus 215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia 294 (409)
T PRK11790 215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG 294 (409)
T ss_pred hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence 99999999999999999999999999999999999999999999999999999999864 5899999999999999
Q ss_pred CCcHHHHHHHHHHHHhhhc
Q 019328 323 SASKWTREGMATLAALNVL 341 (342)
Q Consensus 323 ~~t~~~~~~~~~~~~~ni~ 341 (342)
|+|.++++++...+++|+.
T Consensus 295 ~~t~ea~~~~~~~~~~nl~ 313 (409)
T PRK11790 295 GSTQEAQENIGLEVAGKLV 313 (409)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-70 Score=517.40 Aligned_cols=282 Identities=29% Similarity=0.354 Sum_probs=248.2
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCC
Q 019328 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109 (342)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~g 109 (342)
.+.+++...++.... ..+++++.+.+. ++|++++. ..++++++++++|+| |+|+++|+|+|+||+++|+++|
T Consensus 18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g 89 (317)
T PRK06487 18 LSPLEQAFDELQLHD----ATTPEQVAERLR-GAQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG 89 (317)
T ss_pred hhHHHhhCCeEEEec----CCCHHHHHHHhC-CCeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence 345654444554322 235678888887 59988875 457999999999987 9999999999999999999999
Q ss_pred ceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 110 I~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~g~~l~gktvGIiG~G~IG~~vA~~l~~ 186 (342)
|.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|... ...+++|+||||||||+|+||+.+|+++ +
T Consensus 90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~ 168 (317)
T PRK06487 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E 168 (317)
T ss_pred CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999999755321 1235799999999999999999999997 8
Q ss_pred cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCc
Q 019328 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (342)
Q Consensus 187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ga 266 (342)
+|||+|++|||+.... .....+|++++++||+|++|+|+|++|+|+||++.|++||+|+
T Consensus 169 ~fgm~V~~~~~~~~~~---------------------~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 169 AFGMRVLIGQLPGRPA---------------------RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred hCCCEEEEECCCCCcc---------------------cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 9999999999864320 0113589999999999999999999999999999999999999
Q ss_pred EEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccC--CCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 267 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~--~~nvi~TPHia~~t~~~~~~~~~~~~~ni~ 341 (342)
+|||+|||++||++||++||++|+|+||+||||++||++. +|||+ +|||++|||+||.|.++++++...+++||.
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~ 305 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENAR 305 (317)
T ss_pred EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 79995 899999999999999999999999999984
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.5e-69 Score=519.35 Aligned_cols=304 Identities=44% Similarity=0.684 Sum_probs=264.7
Q ss_pred CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g 94 (342)
++||+++.++++ ...+.|++. +++.... .....+.+++.+.+. ++|++++....++++++++++|+| |+|+++|
T Consensus 2 ~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~~ 75 (333)
T PRK13243 2 KPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVR-DVDALVTMLSERIDCEVFEAAPRL--RIVANYA 75 (333)
T ss_pred CceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhC-CCcEEEEeCCCCCCHHHHhhCCCC--eEEEecC
Confidence 578898887764 345666654 4554332 222346788888887 599999876668999999999987 9999999
Q ss_pred cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC----CCCCcccccccCCCEEEE
Q 019328 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVGV 170 (342)
Q Consensus 95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~----w~~~~~~g~~l~gktvGI 170 (342)
+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.. |.+....|++|+||||||
T Consensus 76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999864 222223578999999999
Q ss_pred EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (342)
Q Consensus 171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t 250 (342)
||+|+||+.+|+++ ++|||+|++|||+....... . .+. ...++++++++||+|++|+|+|++|
T Consensus 156 iG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~~~-~~~~l~ell~~aDiV~l~lP~t~~T 218 (333)
T PRK13243 156 IGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E------------LGA-EYRPLEELLRESDFVSLHVPLTKET 218 (333)
T ss_pred ECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H------------cCC-EecCHHHHHhhCCEEEEeCCCChHH
Confidence 99999999999997 79999999999986542110 0 011 2358999999999999999999999
Q ss_pred ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHH
Q 019328 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330 (342)
Q Consensus 251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~ 330 (342)
+++|+++.|++||+|++|||+|||+++|++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.++++
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~ 298 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEARE 298 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 019328 331 GMATLAALNVL 341 (342)
Q Consensus 331 ~~~~~~~~ni~ 341 (342)
++...+++||.
T Consensus 299 ~~~~~~~~ni~ 309 (333)
T PRK13243 299 GMAELVAENLI 309 (333)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-69 Score=512.81 Aligned_cols=267 Identities=30% Similarity=0.396 Sum_probs=240.4
Q ss_pred CCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHH
Q 019328 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (342)
Q Consensus 50 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~ 129 (342)
.+++++.+.+. ++|++++. ..++++++++++|+| |+|++.|+|+|+||+++|+++||.|+|+||+++++||||+++
T Consensus 33 ~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAK-DADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhC-CCcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 35788888887 49988774 557999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHcCCCCCCCC---CcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 019328 130 LSLAAARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (342)
Q Consensus 130 l~L~~~R~~~~~~~~~~~g~w~~w~~---~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~ 206 (342)
+||+++|++..+++.+++|.|..+.. ....+++|+||||||||+|.||+.+|+++ ++|||+|++||++....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~---- 183 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV---- 183 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCcccc----
Confidence 99999999999999999999864321 11235799999999999999999999997 89999999999864210
Q ss_pred HhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 286 (342)
. .....+|++++++||+|++|+|+|++|+|+||++.|++||||++|||+|||++||++||++||
T Consensus 184 ---------------~-~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL 247 (314)
T PRK06932 184 ---------------C-REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL 247 (314)
T ss_pred ---------------c-ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 0 011358999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEEeecCCCCCCC-CCCcc----CCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328 287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 287 ~~g~i~gaalDV~~~EP~~-~~~L~----~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~ 341 (342)
++|+|+||+||||++||++ ++||| ++|||++|||+||+|.++++++...+++||.
T Consensus 248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~ 307 (314)
T PRK06932 248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIE 307 (314)
T ss_pred HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 47898 5999999999999999999999999999984
No 10
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-70 Score=501.37 Aligned_cols=301 Identities=33% Similarity=0.482 Sum_probs=270.7
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (342)
Q Consensus 14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~ 93 (342)
.+.+||+++++.+. .++.|++.+.++++.. ..+.||+...+. ++|++++++.+++++++|+...+ ++|+|++.
T Consensus 5 ~~~~il~~e~~~~~-~~~~l~~~g~~v~~~~----~~~~eel~~~i~-~~~aviVrs~tkvtadvl~aa~~-~lkvVgra 77 (406)
T KOG0068|consen 5 DMRKILVAESLDQA-CIEILKDNGYQVEFKK----NLSLEELIEKIK-DCDALIVRSKTKVTADVLEAAAG-GLKVVGRA 77 (406)
T ss_pred CcceEEEecccchH-HHHHHHhcCceEEEec----cCCHHHHHHHhc-cCCEEEEEeCCeecHHHHHhhcC-CeEEEEec
Confidence 34489999999874 5789999998887532 357789999998 49999999999999999996433 46999999
Q ss_pred ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (342)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~ 173 (342)
|+|+||||+++|+++||.|.|+|.+|+.++||++++++++++|++.+....+|+|+|+. ..+.|.+|+|||+||+|+
T Consensus 78 g~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~ 154 (406)
T KOG0068|consen 78 GIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGL 154 (406)
T ss_pred ccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999998753 557899999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (342)
Q Consensus 174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l 253 (342)
|+||+++|+++ +++||+|++|||.......+ .+ + ....+++|+++.||||++|||+||+|++|
T Consensus 155 GrIGseVA~r~-k~~gm~vI~~dpi~~~~~~~---a~------------g-vq~vsl~Eil~~ADFitlH~PLtP~T~~l 217 (406)
T KOG0068|consen 155 GRIGSEVAVRA-KAMGMHVIGYDPITPMALAE---AF------------G-VQLVSLEEILPKADFITLHVPLTPSTEKL 217 (406)
T ss_pred ccchHHHHHHH-HhcCceEEeecCCCchHHHH---hc------------c-ceeeeHHHHHhhcCEEEEccCCCcchhhc
Confidence 99999999996 89999999999987542211 11 1 12479999999999999999999999999
Q ss_pred cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC---CCCccCCCceEEcCCCCCCcHHHHH
Q 019328 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTRE 330 (342)
Q Consensus 254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvi~TPHia~~t~~~~~ 330 (342)
+|.+.|++||+|..+||+|||++||+.||++||++|+++|||+|||+.||+. .+.|.++|||++|||+|+.|.|++.
T Consensus 218 in~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~ 297 (406)
T KOG0068|consen 218 LNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQS 297 (406)
T ss_pred cCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 4689999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 019328 331 GMATLAALNVL 341 (342)
Q Consensus 331 ~~~~~~~~ni~ 341 (342)
+.+..+++++.
T Consensus 298 ~iaievaea~~ 308 (406)
T KOG0068|consen 298 RIAIEVAEAVS 308 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999998863
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-66 Score=504.87 Aligned_cols=292 Identities=22% Similarity=0.238 Sum_probs=255.7
Q ss_pred HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328 29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106 (342)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~ 106 (342)
..+.|++.++++.+... ...+.+++.+.+. ++|++|+.. +.++++++++++|+| |+|++.|+|+||||+++|+
T Consensus 67 ~~~~l~~~g~~~v~~~~--~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~ 141 (386)
T PLN03139 67 IRDWLESQGHQYIVTDD--KEGPDCELEKHIP-DLHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAA 141 (386)
T ss_pred HHHHHHhcCCeEEEeCC--CCCCHHHHHHHhC-CCeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHH
Confidence 45677788888765432 2346778888887 499998864 347999999999998 9999999999999999999
Q ss_pred hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~ 186 (342)
++||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|.||||||||+|+||+.+|++| +
T Consensus 142 ~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~ 219 (386)
T PLN03139 142 AAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-K 219 (386)
T ss_pred HCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999988521 112346899999999999999999999997 7
Q ss_pred cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCc
Q 019328 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (342)
Q Consensus 187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ga 266 (342)
+|||+|++||++..+.... . ..+.....++++++++||+|++|+|+|++|+++||++.|++||+|+
T Consensus 220 afG~~V~~~d~~~~~~~~~--~------------~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 285 (386)
T PLN03139 220 PFNCNLLYHDRLKMDPELE--K------------ETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGV 285 (386)
T ss_pred HCCCEEEEECCCCcchhhH--h------------hcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCe
Confidence 9999999999985321110 0 0112234589999999999999999999999999999999999999
Q ss_pred EEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 267 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~ 341 (342)
+|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.++++++...+++||.
T Consensus 286 ~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~ 361 (386)
T PLN03139 286 LIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLD 361 (386)
T ss_pred EEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 479999999999999999999999999999999984
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1e-66 Score=505.21 Aligned_cols=291 Identities=24% Similarity=0.268 Sum_probs=255.3
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHHh
Q 019328 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (342)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~ 107 (342)
.+.|++.++++.+.. +...+.+++.+.+. ++|++|+.. ..++++++++++|+| |+|+++|+|+||||+++|++
T Consensus 61 ~~~l~~~g~e~~~~~--~~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~ 135 (385)
T PRK07574 61 RKFLEERGHELVVTS--DKDGPDSDFEKELP-DADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASE 135 (385)
T ss_pred HHHHHhcCcEEEEeC--CCCCCHHHHHHHcC-CCeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHH
Confidence 356778888876532 22346788888887 499998863 357999999999997 99999999999999999999
Q ss_pred CCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhc
Q 019328 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (342)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a 187 (342)
+||.|+|+|++|+.+||||++++||+++|++..+++.+++|.|..+.. ...+++|+||||||||+|+||+.+|++| ++
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~ 213 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP 213 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-Hh
Confidence 999999999999999999999999999999999999999999864321 1246799999999999999999999997 79
Q ss_pred CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcE
Q 019328 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (342)
Q Consensus 188 ~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gai 267 (342)
|||+|++|||+..+.... . ..+.....++++++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus 214 fG~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 279 (385)
T PRK07574 214 FDVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY 279 (385)
T ss_pred CCCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence 999999999986321110 0 01122346899999999999999999999999999999999999999
Q ss_pred EEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 268 lIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~ 341 (342)
|||+|||+++|++||++||++|+|+|||||||++||++ ++|||++|||++|||+||.|.++++++...+++||.
T Consensus 280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~ 354 (385)
T PRK07574 280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILE 354 (385)
T ss_pred EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 479999999999999999999999999999999984
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.5e-66 Score=499.09 Aligned_cols=312 Identities=25% Similarity=0.312 Sum_probs=258.2
Q ss_pred eCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccC
Q 019328 10 WNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG 86 (342)
Q Consensus 10 ~~~~~~~kvl~~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~ 86 (342)
++-++++|||++.+..+. .| .+.+++.++ .. +. ..+.+++.+.+. ++|++++. ..++++++++.+|+|
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L- 83 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPF-IQ-VD----AVAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM- 83 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCe-eE-ec----CCCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc-
Confidence 456678899998876653 22 344443332 22 22 235677887776 59998876 457999999999987
Q ss_pred CceEEEcccccCccChhHHHhCCceEEcCCCC---CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccccc
Q 019328 87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL 163 (342)
Q Consensus 87 ~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~---~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l 163 (342)
|+|++.|+|+|+||+++|.++||.|+|+|++ ++.+||||++++||+++|++..+++.+++|.|.. ..+++|
T Consensus 84 -k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l 157 (347)
T PLN02928 84 -KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTL 157 (347)
T ss_pred -eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCC
Confidence 9999999999999999999999999999986 7899999999999999999999999999998742 246799
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
+|||+||||+|.||+.+|+++ ++|||+|++|||+......... .+. ... ....... ....++++++++||+|++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGL-LIPNGDV--DDLVDEK-GGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhh-ccccccc--ccccccc-CcccCHHHHHhhCCEEEE
Confidence 999999999999999999997 7999999999997532111000 000 000 0000000 134689999999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHI 321 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHi 321 (342)
|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHi 312 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHV 312 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcC
Confidence 999999999999999999999999999999999999999999999999999999999999976 5799999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhc
Q 019328 322 ASASKWTREGMATLAALNVL 341 (342)
Q Consensus 322 a~~t~~~~~~~~~~~~~ni~ 341 (342)
||+|.++++++...+++|+.
T Consensus 313 a~~t~~~~~~~~~~~~~nl~ 332 (347)
T PLN02928 313 AGVTEYSYRSMGKIVGDAAL 332 (347)
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999984
No 14
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=4.4e-66 Score=522.24 Aligned_cols=298 Identities=36% Similarity=0.529 Sum_probs=263.0
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccc
Q 019328 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (342)
Q Consensus 17 kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G 96 (342)
||+++.++.+. ..+.|++.++++... . ..+++++.+.+. ++|++++++.+++++++++++|+| |+|++.|+|
T Consensus 1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIP-DYDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 47788877653 456777666666532 1 236788888887 599999887778999999999987 999999999
Q ss_pred cCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChH
Q 019328 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (342)
Q Consensus 97 ~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~I 176 (342)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|..+ .+.|.+|+||||||||+|+|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999988532 24578999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~ 256 (342)
|+.+|++| ++|||+|++|||+....... ..+.....++++++++||+|++|+|+|++|+++||+
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence 99999997 79999999999974321110 011222358999999999999999999999999999
Q ss_pred hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHHHH
Q 019328 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA 336 (342)
Q Consensus 257 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~ 336 (342)
+.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||+|+.|.+++++++..+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~ 293 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV 293 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred Hhhhc
Q 019328 337 ALNVL 341 (342)
Q Consensus 337 ~~ni~ 341 (342)
++|+.
T Consensus 294 ~~ni~ 298 (525)
T TIGR01327 294 AEQVL 298 (525)
T ss_pred HHHHH
Confidence 99974
No 15
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-65 Score=515.90 Aligned_cols=298 Identities=35% Similarity=0.516 Sum_probs=262.1
Q ss_pred eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 16 ~kvl~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g 94 (342)
|||+++.++++. ..+.|++. ++++.. .. ..+++++.+.+. ++|++++++.+++++++++++|+| |+|++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~--~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDV--KT--GLDKEELLEIIG-DYDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEe--CC--CCCHHHHHHHhc-CCCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 478888877653 35667664 455442 11 236788888887 499999887778999999999987 9999999
Q ss_pred cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC
Q 019328 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (342)
Q Consensus 95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G 174 (342)
+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|..+ .+.|++|+||||||||+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999988642 245789999999999999
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019328 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (342)
Q Consensus 175 ~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li 254 (342)
+||+.+|+++ ++|||+|++|||+....... ..+... .++++++++||+|++|+|+|++|+++|
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHTPLTPETRGLI 212 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCc
Confidence 9999999997 79999999999975432110 011222 389999999999999999999999999
Q ss_pred CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHH
Q 019328 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334 (342)
Q Consensus 255 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~ 334 (342)
+++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||+|+.|.+++++++.
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~ 292 (526)
T PRK13581 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI 292 (526)
T ss_pred CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHhhhc
Q 019328 335 LAALNVL 341 (342)
Q Consensus 335 ~~~~ni~ 341 (342)
.+++|+.
T Consensus 293 ~~~~ni~ 299 (526)
T PRK13581 293 QVAEQVI 299 (526)
T ss_pred HHHHHHH
Confidence 9999984
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-65 Score=485.09 Aligned_cols=301 Identities=28% Similarity=0.435 Sum_probs=256.4
Q ss_pred CeEEEEeCCCCc-hH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328 15 KYRVVSTKPMPG-TR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (342)
Q Consensus 15 ~~kvl~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~ 92 (342)
||||++...-+. .. ..+.+++.++++... +...+++. .+.+. ++|++++...+++++++++++|+.++|+|++
T Consensus 1 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~ 75 (330)
T PRK12480 1 MTKIMFFGTRDYEKEMALNWGKKNNVEVTTS---KELLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQ 75 (330)
T ss_pred CcEEEEEeCcHHHHHHHHHHHHhcCeEEEEc---CCCCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEe
Confidence 377776544333 22 334556666555432 22455554 66666 5999998766789999999998444599999
Q ss_pred cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (342)
Q Consensus 93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG 172 (342)
.|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+++|.|. |... ..|++|+|+||||||
T Consensus 76 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG 153 (330)
T PRK12480 76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIG 153 (330)
T ss_pred cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999884 6432 357899999999999
Q ss_pred cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (342)
Q Consensus 173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~ 252 (342)
+|.||+.+|++| ++|||+|++||+++..... + .....++++++++||+|++|+|++++|++
T Consensus 154 ~G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 154 TGRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CCHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 999999999997 7999999999998754211 0 01235899999999999999999999999
Q ss_pred ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC----------C----CCccCCCceEEc
Q 019328 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVV 318 (342)
Q Consensus 253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvi~T 318 (342)
+++++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||+. + +|||++|||++|
T Consensus 215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT 294 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT 294 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999962 1 269999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhc
Q 019328 319 PHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 319 PHia~~t~~~~~~~~~~~~~ni~ 341 (342)
||+|++|.++++++.+.+++|+.
T Consensus 295 PHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 295 PHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred CcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=6e-64 Score=480.63 Aligned_cols=304 Identities=24% Similarity=0.403 Sum_probs=258.4
Q ss_pred CCCeEEEEeCCCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEE
Q 019328 13 NGKYRVVSTKPMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS 91 (342)
Q Consensus 13 ~~~~kvl~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~ 91 (342)
|++++++++++.+.. +.+.+.+ .+.++.... ...++ |..+.+. ++|+++++..+++++++++++|++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~ 74 (332)
T PRK08605 1 MTKIKIMSVRDEDAP-YIKAWAEKHHVEVDLTK---EALTD-DNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIA 74 (332)
T ss_pred CcEEEEEecCHHHHH-HHHHHHHhcCeEEEEec---CCCCH-HHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEE
Confidence 356778888876543 4555544 333332211 12344 4456665 599999887788999999999986679999
Q ss_pred EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 019328 92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (342)
Q Consensus 92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIi 171 (342)
+.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.| .|.+. ..|++|+|+|||||
T Consensus 75 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~-~~~~~-~~~~~l~g~~VgII 152 (332)
T PRK08605 75 QRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDF-RWEPP-ILSRSIKDLKVAVI 152 (332)
T ss_pred EcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCc-ccccc-cccceeCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998 47542 35789999999999
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (342)
Q Consensus 172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~ 251 (342)
|+|.||+.+|++|+++|||+|++||++....... ......++++++++||+|++|+|++++|+
T Consensus 153 G~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-----------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~ 215 (332)
T PRK08605 153 GTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT-----------------YVDYKDTIEEAVEGADIVTLHMPATKYNH 215 (332)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh-----------------hccccCCHHHHHHhCCEEEEeCCCCcchh
Confidence 9999999999997458999999999986542111 01123589999999999999999999999
Q ss_pred cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CC-C-----------CccCCCceEE
Q 019328 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK-P-----------GLSEMKNAIV 317 (342)
Q Consensus 252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~-~-----------~L~~~~nvi~ 317 (342)
++++++.++.||+|++|||+|||.++|+++|+++|++|+|+||+||||++||+ +. + +||++|||++
T Consensus 216 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvil 295 (332)
T PRK08605 216 YLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVIL 295 (332)
T ss_pred hhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999983 22 2 4999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhc
Q 019328 318 VPHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 318 TPHia~~t~~~~~~~~~~~~~ni~ 341 (342)
|||+|++|.++++++...+++|+.
T Consensus 296 TPHia~~t~e~~~~~~~~~~~n~~ 319 (332)
T PRK08605 296 TPHIAFYTDAAVKNLIVDALDATL 319 (332)
T ss_pred CCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999974
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=9.4e-64 Score=470.31 Aligned_cols=273 Identities=41% Similarity=0.592 Sum_probs=243.2
Q ss_pred CCHHHHHHHhcCCccEEEecCCcCccHHHHHHh-hccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHH
Q 019328 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA 128 (342)
Q Consensus 50 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al 128 (342)
.+.++....+.+...++.+.....++.+.+.++ |++ |+|+.+|+|+||||+++|++|||+|+|+|+.++++|||+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~ 126 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAV 126 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHH
Confidence 344455555554345555555667788888887 777 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh
Q 019328 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208 (342)
Q Consensus 129 ~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~ 208 (342)
+++|.+.|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|+|| ++||+.+.|++|+.....+..
T Consensus 127 ~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y~~r~~~~~~~~~-- 202 (336)
T KOG0069|consen 127 SLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILYHSRTQLPPEEAY-- 202 (336)
T ss_pred HHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeeeecccCCchhhHH--
Confidence 9999999999999999999999 787777788999999999999999999999998 799999999998765422211
Q ss_pred hhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
++. ....++++++.+||+|++|||+|++|+|+||+++|.+||+|++|||++||.++|++++++||++
T Consensus 203 ~~~-------------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 203 EYY-------------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred Hhc-------------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 110 1146999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328 289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341 (342)
Q Consensus 289 g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~ 341 (342)
|+|+||+||||++||.+++||++++||++|||+|+.|.+++++|+..++.|+.
T Consensus 270 G~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~ 322 (336)
T KOG0069|consen 270 GKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLL 322 (336)
T ss_pred CCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999977889999999999999999999999999999999974
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=7.5e-61 Score=462.43 Aligned_cols=271 Identities=27% Similarity=0.364 Sum_probs=234.7
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (342)
Q Consensus 16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~ 95 (342)
|||++.+.++. ..+.+.+.+ +++..+ ....+.+++ . ++|++++++.+++++++++ .+++ |+|+++++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 57999888764 245665543 665543 234455553 3 5999999888899999985 5776 99999999
Q ss_pred ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (342)
Q Consensus 96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~ 175 (342)
|+||||+++++++||.|+|+||+|+.+||||++++||++.|+. |.+|.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999862 2479999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----cc
Q 019328 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY 251 (342)
Q Consensus 176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~----t~ 251 (342)
||+.+|+++ ++|||+|++|||..... . . .....++++++++||+|++|+|+|++ |+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~---~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR---------------G---D-EGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc---------------c---c-ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 999999997 79999999999854311 0 0 01246899999999999999999996 99
Q ss_pred cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (342)
Q Consensus 252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~ 331 (342)
||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++||..++ |+||||||+|.++..+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~ 265 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR 265 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888988765 9999999999999999
Q ss_pred HHHHHHhhhc
Q 019328 332 MATLAALNVL 341 (342)
Q Consensus 332 ~~~~~~~ni~ 341 (342)
+..++++|+.
T Consensus 266 ~~~~~~~~l~ 275 (378)
T PRK15438 266 GTTQVFEAYS 275 (378)
T ss_pred HHHHHHHHHH
Confidence 9999999974
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7.6e-60 Score=456.75 Aligned_cols=271 Identities=25% Similarity=0.354 Sum_probs=233.9
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (342)
Q Consensus 16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~ 95 (342)
|||++.+.++.. .+.+++.+ ++...+. ...+.+ .+. ++|++++++.+++++++++ .+++ |+|+++++
T Consensus 1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~~--~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPLL--DAFFAGFG-EIRRLPG--RAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchhH--HHHHhhCC-cEEEcCC--cccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 689999888742 34555543 5554332 223333 344 5999999888889999987 4665 99999999
Q ss_pred ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (342)
Q Consensus 96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~ 175 (342)
|+||||+++++++||.|+|+||+|+.+||||++++||++.|+ .|+++.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999875 13589999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCc----ccc
Q 019328 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY 251 (342)
Q Consensus 176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~----~t~ 251 (342)
||+.+|+++ ++|||+|++|||..... + ......++++++++||+|++|+|+|+ +|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~------------------~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E------------------GDGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc-c------------------cCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 999999997 79999999999854321 0 01124689999999999999999999 599
Q ss_pred cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (342)
Q Consensus 252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~ 331 (342)
||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++||.. |+++|||+||+|.++..+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR 265 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888899985 999999999999999999
Q ss_pred HHHHHHhhhc
Q 019328 332 MATLAALNVL 341 (342)
Q Consensus 332 ~~~~~~~ni~ 341 (342)
+..++.+|+.
T Consensus 266 ~~~~~~~nl~ 275 (381)
T PRK00257 266 GTAQIYQALC 275 (381)
T ss_pred HHHHHHHHHH
Confidence 9999999974
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=6e-59 Score=441.66 Aligned_cols=283 Identities=19% Similarity=0.228 Sum_probs=230.5
Q ss_pred EEEEeCCC-CchHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328 17 RVVSTKPM-PGTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (342)
Q Consensus 17 kvl~~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~ 93 (342)
.+++..+. ....|.+.|++. +.++..+.. ++ .. ++|+++++.. +.++++ .++| |+|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-------~~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~ 63 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-------GD----ND-PADYALVWHP---PVEMLA-GRDL--KAVFAL 63 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-------CC----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEc
Confidence 45544333 444578888775 333332211 11 12 5898887642 356665 4666 999999
Q ss_pred ccccCccChhH-----HHhCCceEEcCCC-CCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 019328 94 AVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (342)
Q Consensus 94 g~G~d~id~~~-----a~~~gI~v~n~p~-~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gkt 167 (342)
|+|+|++|.+. +..+||.|+|+++ .++.+||||++++||++.|++..+.+.+++|.|..+ .+.+++|||
T Consensus 64 ~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~t 138 (312)
T PRK15469 64 GAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFT 138 (312)
T ss_pred ccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCE
Confidence 99999998332 3458999999875 689999999999999999999999999999987532 246899999
Q ss_pred EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt 247 (342)
|||||+|.||+.+|++| ++|||+|++||++.+... +.. ......++++++++||+|++|+|+|
T Consensus 139 vgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt 201 (312)
T PRK15469 139 IGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNT 201 (312)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCC
Confidence 99999999999999997 799999999998754310 000 0112458999999999999999999
Q ss_pred cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCCCcH
Q 019328 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~~t~ 326 (342)
++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.
T Consensus 202 ~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~ 281 (312)
T PRK15469 202 PETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR 281 (312)
T ss_pred HHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999875 79999999999999999998
Q ss_pred HHHHHHHHHHHhhhc
Q 019328 327 WTREGMATLAALNVL 341 (342)
Q Consensus 327 ~~~~~~~~~~~~ni~ 341 (342)
++ ++...+.+|+.
T Consensus 282 ~~--~~~~~~~~n~~ 294 (312)
T PRK15469 282 PA--EAVEYISRTIA 294 (312)
T ss_pred HH--HHHHHHHHHHH
Confidence 76 57888888874
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-58 Score=436.11 Aligned_cols=243 Identities=23% Similarity=0.340 Sum_probs=213.6
Q ss_pred CccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019328 62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (342)
Q Consensus 62 ~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~ 141 (342)
++|+++++.. +...++| |+|++.|+|+|+||+++|+++||.++|. |.++.+||||++++||+++|++..+
T Consensus 34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence 4788865432 1224565 9999999999999999999998888775 7889999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC
Q 019328 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 142 ~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (342)
++.+++|.|..+ .+++|+||||||||+|+||+++|+++ ++|||+|++|||+..+. +..
T Consensus 104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~- 161 (303)
T PRK06436 104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS- 161 (303)
T ss_pred HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence 999999988632 35799999999999999999999996 79999999999975321 100
Q ss_pred ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (342)
Q Consensus 222 ~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 301 (342)
....++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||+++|++||+++|++|++.||+||||++
T Consensus 162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 11358999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCceEEcCCCC-CCcHHHHHHHHHHHHhhhc
Q 019328 302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVL 341 (342)
Q Consensus 302 EP~~~~~L~~~~nvi~TPHia-~~t~~~~~~~~~~~~~ni~ 341 (342)
||++++. .+|||++|||++ +.|.++++++...+++||.
T Consensus 239 EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~ 277 (303)
T PRK06436 239 EPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIK 277 (303)
T ss_pred CCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHH
Confidence 9986543 789999999986 5899999999999999984
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=4.6e-51 Score=359.03 Aligned_cols=177 Identities=42% Similarity=0.563 Sum_probs=152.1
Q ss_pred HHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH
Q 019328 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (342)
Q Consensus 128 l~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~ 207 (342)
+++||++.|++..+++.+++|.| |.+....+++++|+||||||+|+||+.+|+++ ++|||+|++|||+.+......
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~- 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGAD- 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHH-
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhcc-
Confidence 68999999999999999999998 22233567899999999999999999999997 799999999999987543110
Q ss_pred hhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 287 (342)
. .+ ....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus 77 -~------------~~-~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 77 -E------------FG-VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -H------------TT-EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -c------------cc-ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 0 11 135699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCC
Q 019328 288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (342)
Q Consensus 288 ~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia 322 (342)
+|+++||+||||++||++. +|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999875 5999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.98 E-value=2.4e-32 Score=255.17 Aligned_cols=265 Identities=28% Similarity=0.383 Sum_probs=219.9
Q ss_pred CHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHH
Q 019328 51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130 (342)
Q Consensus 51 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l 130 (342)
+..|+.+.+-..+-+-+...+..++++-+++++.+ +++.+.|.|+|++|+.+|.+.||.|||.|+..-+.+|+-++..
T Consensus 62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h 139 (435)
T KOG0067|consen 62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH 139 (435)
T ss_pred chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence 44555543321222222333456788888998887 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCCCCC-CCCC---cccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 019328 131 SLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (342)
Q Consensus 131 ~L~~~R~~~~~~~~~~~g~w~~-w~~~---~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~ 206 (342)
+|.++|+-....+.+++|.|.+ |... ........|.++|++|+|+.|+.++.+ +++||..|+.||++...-.+.
T Consensus 140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~- 217 (435)
T KOG0067|consen 140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK- 217 (435)
T ss_pred HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh-
Confidence 9999999999999999998842 2111 112346899999999999999999999 599999999999997653322
Q ss_pred HhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 286 (342)
..+..+..++.+++.++|.+++||.+++.++++|+.-.+++|+.|++++|++||.++|+++|.+||
T Consensus 218 --------------~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL 283 (435)
T KOG0067|consen 218 --------------SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL 283 (435)
T ss_pred --------------hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence 123344567999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEEeecCCCCCC--CCCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhh
Q 019328 287 KQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNV 340 (342)
Q Consensus 287 ~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni 340 (342)
++|++.+++ |. ...||-+.||.|+|||.++++..+.-+|...++..+
T Consensus 284 k~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~ei 332 (435)
T KOG0067|consen 284 KSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEI 332 (435)
T ss_pred ccCceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhh
Confidence 999999998 32 124799999999999999999888777777666544
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.89 E-value=4.1e-22 Score=196.39 Aligned_cols=171 Identities=20% Similarity=0.314 Sum_probs=137.4
Q ss_pred EcccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328 92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV 170 (342)
Q Consensus 92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI 170 (342)
-+++|+..+- ++.....||+|+|+|++++.+++|+++++++++. +..+|.+ +.++.||++||
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~~~LaGKtVgV 259 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------DVMIAGKTVVV 259 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------CCCcCCCEEEE
Confidence 3467776542 2233346899999999999999999999999988 3345553 24799999999
Q ss_pred EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (342)
Q Consensus 171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t 250 (342)
+|+|.||+.+|+++ ++|||+|+++++++........ .++ ...+++++++.||+|++|. .|
T Consensus 260 IG~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~--------------~G~-~~~~leell~~ADIVI~at----Gt 319 (476)
T PTZ00075 260 CGYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAM--------------EGY-QVVTLEDVVETADIFVTAT----GN 319 (476)
T ss_pred ECCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHh--------------cCc-eeccHHHHHhcCCEEEECC----Cc
Confidence 99999999999997 7999999999877654322110 111 2357999999999999994 47
Q ss_pred ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC
Q 019328 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK 306 (342)
Q Consensus 251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~ 306 (342)
+++|+++.|++||+|++|||+||+ |++.+.++|+.+. ++||++.||...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 899999999999999999999999 7888999998754 799999999653
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.85 E-value=1.9e-20 Score=176.22 Aligned_cols=200 Identities=19% Similarity=0.204 Sum_probs=146.3
Q ss_pred HHHHHHHhCCCeEEEecCCC--C---CCCHHHHHHH-hcCCccEEEecCC----------------cCccHHHHHHhhcc
Q 019328 28 RWINLLIEQDCRVEICTQKK--T---ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRA 85 (342)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~--~---~~~~~~~~~~-~~~~~d~~i~~~~----------------~~~~~~~~~~~~~l 85 (342)
...+.|.+.|+.+..+..+. . .....++.+. +. ++|++|...+ .++++++++++|
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~-- 91 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK-- 91 (287)
T ss_pred HHHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcC--
Confidence 45677888898886653321 1 0112222222 33 5888875321 224678888776
Q ss_pred CCceEEEcccccCccChh-HHHhCCceEE------cCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcc
Q 019328 86 GGKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF 158 (342)
Q Consensus 86 ~~k~i~~~g~G~d~id~~-~a~~~gI~v~------n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~ 158 (342)
.++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++.+++..
T Consensus 92 ---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------ 144 (287)
T TIGR02853 92 ---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------ 144 (287)
T ss_pred ---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------
Confidence 355677889999988 9999999999 999999999999999877732
Q ss_pred cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
.+.+++|++++|+|+|.||+.+|++| +++|++|++++|+.+..... ... + .......+++++++++|
T Consensus 145 ~~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~--~~~-------g---~~~~~~~~l~~~l~~aD 211 (287)
T TIGR02853 145 TDFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI--TEM-------G---LIPFPLNKLEEKVAEID 211 (287)
T ss_pred cCCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHC-------C---CeeecHHHHHHHhccCC
Confidence 12378999999999999999999997 79999999999987542111 000 1 11112346788999999
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
+|++|+|.+ +++++.++.||+++++||++..+
T Consensus 212 iVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 212 IVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 999999964 67899999999999999998744
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.73 E-value=4.5e-17 Score=136.24 Aligned_cols=101 Identities=31% Similarity=0.428 Sum_probs=85.8
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccccc
Q 019328 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (342)
Q Consensus 18 vl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~ 97 (342)
||+++++++. ..+.|++ +++++++. ..+.+++.+.+. ++|++++...+++++++++.+|+| |+|++.|+|+
T Consensus 1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~-~~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLK-DADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHT-TESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhC-CCeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 6888988764 4678887 66887654 347889998887 499999987777999999999987 9999999999
Q ss_pred CccChhHHHhCCceEEcCCCCCchhHHHHH
Q 019328 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (342)
Q Consensus 98 d~id~~~a~~~gI~v~n~p~~~~~~vAE~a 127 (342)
|+||+++|+++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.70 E-value=1.2e-15 Score=144.51 Aligned_cols=196 Identities=19% Similarity=0.188 Sum_probs=142.0
Q ss_pred HHHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCccEEEecCC----------------cCccHHHHHHh
Q 019328 28 RWINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAAL 82 (342)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~~i~~~~----------------~~~~~~~~~~~ 82 (342)
...+.|.+.|+++.+...++... +.++ .+. ++|+++.-.+ ..++++.++.+
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l 91 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELT 91 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhc
Confidence 45677888999987654433211 2222 333 5898875421 12367889999
Q ss_pred hccCCceEEEcccccCccChhHHHhCCceEEcCCCC------CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC
Q 019328 83 SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156 (342)
Q Consensus 83 ~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~------~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~ 156 (342)
|+. ..+ ..|.+.+++| +.|.++||.+.+.+.. |+.++||.++.+++. +
T Consensus 92 ~~~--~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---~------------------- 145 (296)
T PRK08306 92 PEH--CTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---H------------------- 145 (296)
T ss_pred CCC--CEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---h-------------------
Confidence 985 433 3589999998 8899999999987754 888999997765431 0
Q ss_pred cccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 157 ~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (342)
.+.++.|++++|+|+|.+|+.+++.| +++|++|+++||++..... ...+ + .......++.+.+++
T Consensus 146 --~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~--~~~~-------G---~~~~~~~~l~~~l~~ 210 (296)
T PRK08306 146 --TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLAR--ITEM-------G---LSPFHLSELAEEVGK 210 (296)
T ss_pred --CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH--HHHc-------C---CeeecHHHHHHHhCC
Confidence 12367899999999999999999997 7999999999999754221 1111 1 111123467888999
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
+|+|+.++|. .+++++.++.|++++++||++.
T Consensus 211 aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 211 IDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 9999999983 4688999999999999999975
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.69 E-value=8.5e-17 Score=158.50 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=102.9
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..+.||+++|+|+|.||+.+|+++ ++|||+|+++++++......... ++. ..+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~--------------G~~-vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME--------------GYQ-VLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc--------------CCe-eccHHHHHhhCCEE
Confidence 357999999999999999999996 79999999999887543222111 111 24789999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCC-CccCCHHHHHHH--HHcCCccEEEeecCCCCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR-G~~vd~~aL~~a--L~~g~i~gaalDV~~~EP 303 (342)
+. +..++++++++.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +.+|+|+.|-
T Consensus 314 I~----tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 314 VT----TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred EE----CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 97 456889999999999999999999999 689999999998 9999888 9999999865
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.64 E-value=5.8e-15 Score=144.37 Aligned_cols=121 Identities=26% Similarity=0.283 Sum_probs=101.7
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....+... .++ ...+++++++.+|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~--------------~G~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAM--------------DGF-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHh--------------cCC-EeCCHHHHHhcCCEE
Confidence 358999999999999999999996 8999999999887654322211 111 234678899999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcCCccEEEeecCCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED 301 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i~gaalDV~~~ 301 (342)
+.+.. +.++|+.+.|..||+|++++|+||+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus 255 ItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 255 ITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred EECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 87643 688999999999999999999999998 9999999999988889999999884
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.54 E-value=1.7e-14 Score=136.09 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=77.3
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..|+||||||||+|.||+++|++| ++||++|++|++........ . . .+.. ..++++++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~~~A--~-------~-----~G~~-v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSFEVA--K-------A-----DGFE-VMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhhHHH--H-------H-----cCCE-ECCHHHHHhcCCEE
Confidence 479999999999999999999998 79999999998653321110 0 0 1111 34899999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
++|+|+ ++++++++++.+..||+|++|+- |.|=
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f-~hgf 108 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF-SHGF 108 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE-CCCc
Confidence 999997 77899999999999999998873 3443
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.47 E-value=1.3e-12 Score=128.55 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=112.1
Q ss_pred EcccccCcc-ChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328 92 NMAVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV 170 (342)
Q Consensus 92 ~~g~G~d~i-d~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI 170 (342)
-+++|+... ..+...+.+++|.|++..+..+.-|...+.-.+....+ .+. .+..+.|++++|
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai------~ra-----------t~~~l~Gk~VlV 217 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI------KRA-----------TNVLIAGKVVVV 217 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHH------HHh-----------ccCCCCCCEEEE
Confidence 457777664 33333467899999999888775554333222222111 111 123589999999
Q ss_pred EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (342)
Q Consensus 171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t 250 (342)
+|+|.||+.+|+++ +++|++|+++|+++....+... .++. ..+++++++.+|+|+.+. .+
T Consensus 218 iG~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~--------------~G~~-v~~l~eal~~aDVVI~aT----G~ 277 (425)
T PRK05476 218 AGYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAM--------------DGFR-VMTMEEAAELGDIFVTAT----GN 277 (425)
T ss_pred ECCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHh--------------cCCE-ecCHHHHHhCCCEEEECC----CC
Confidence 99999999999997 7999999999988754322211 0111 347899999999998875 35
Q ss_pred ccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH
Q 019328 251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (342)
Q Consensus 251 ~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~ 284 (342)
.++|+.+.|+.||+|++++|+|+... +|.++|.+
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 77899999999999999999999886 78888764
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.38 E-value=1.1e-12 Score=113.49 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=85.1
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++|||||+|.||+.+|++| ..-|.+|++|||++++.. .+.+ .+.....++.|++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~-~~~~-------------~g~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAE-ALAE-------------AGAEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHH-HHHH-------------TTEEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhh-hhHH-------------hhhhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 578999999999976532 2211 123456799999999999999999
Q ss_pred CCcccccccC-HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328 246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 246 lt~~t~~li~-~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 291 (342)
..++++.++. .+.++.+++|.++||++...+-....+.+.+.+..+
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~ 113 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGV 113 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccc
Confidence 8888887763 237888999999999999999999999999987653
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.36 E-value=3.2e-12 Score=119.38 Aligned_cols=124 Identities=21% Similarity=0.153 Sum_probs=100.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
.+||+||+|.||.++|++| ..-|..|.+|||++.+..+. .. . .+.....+..|+.+.||+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~-~~-------~-----~Ga~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL-LA-------A-----AGATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH-HH-------H-----cCCcccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 57899999999998763221 11 1 123345788999999999999999
Q ss_pred CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
..++.+.++. ...++.||||+++||+|+.+....+.+.++++++.+...--=|.-..+
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 9999999885 579999999999999999999999999999999876544222444433
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.34 E-value=7.6e-12 Score=107.20 Aligned_cols=105 Identities=29% Similarity=0.426 Sum_probs=76.9
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..+.||++.|+|||.+|+.+|+.| +++|++|.+++..|-...++..++| ...+++++++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 479999999999999999999997 7999999999999877666655443 235799999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHH
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH 285 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~a 285 (342)
+.+.- .++++..+.|++||+|+++.|++.-.. +|-+.|.+.
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccccc
Confidence 98855 467889999999999999999987654 566665443
No 36
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.27 E-value=1.6e-11 Score=115.99 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=88.6
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl 246 (342)
+|||||+|.||+.+|+.| ...|.+|++|||++... +.+. .. +.....++++++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DELL--------AA-----GAVTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HC-----CCcccCCHHHHHhcCCEEEEecCC
Confidence 489999999999999998 57899999999987542 2111 11 112245788999999999999998
Q ss_pred Cccccccc-C-HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 247 t~~t~~li-~-~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
+++++.++ + ...+..+++|+++||++++.+.+.+++.+.++++.+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 88887775 3 3467889999999999999998889999999886433
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.26 E-value=2e-11 Score=115.38 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=93.9
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++|||||+|.||+.+|+.+ ...|.+|++|||++.... ... .. +.....++++++++||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~-~~~--------~~-----g~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVA-EVI--------AA-----GAETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HHH--------HC-----CCeecCCHHHHHhcCCEEEEeCC
Confidence 5799999999999999998 578999999999875421 111 01 11234678999999999999999
Q ss_pred CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
.+.+++.++. ...+..+++|.++||+|+..+...+++.+.+.+..+...---|+-.+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8888887764 346788999999999999999888899999987655433223444333
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.21 E-value=5.7e-11 Score=112.60 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=90.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++|||||+|.||..+|+.| ...|.+|++||+++.+. +.+.. . +.....++.+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~~--------~-----g~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALVD--------K-----GATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------c-----CCcccCCHHHHHhcCCEEEEecC
Confidence 4799999999999999998 46789999999987643 22111 1 12234688899999999999999
Q ss_pred CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
...+++..+. ...+..+++|.++||+|++.+...+.+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8777777764 3467789999999999999999999999999987655
No 39
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.21 E-value=7.5e-11 Score=111.92 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=90.4
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~ 243 (342)
+|||||+|.||+.+|++| ...|.+|++|||+++... ... . .+.....++++++++ +|+|++|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~-~~~--------~-----~g~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVD-VAG--------K-----LGITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHH-HHH--------H-----CCCeecCCHHHHHHhCCCCCEEEEE
Confidence 699999999999999998 578999999999875421 111 1 112234688898876 6999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD 297 (342)
+|..+.++.++ .+.+..+++|.++||+|++...+...+.+.+.+..+. -+|
T Consensus 67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 99887888877 4677889999999999999999999999999887643 355
No 40
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.20 E-value=2e-10 Score=112.91 Aligned_cols=105 Identities=24% Similarity=0.349 Sum_probs=83.4
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
+..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++........ .++ ...++++.+..+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A~~--------------~G~-~~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQAAM--------------EGY-EVMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHHHh--------------cCC-EEccHHHHHcCCCE
Confidence 3568999999999999999999996 8999999999988654322211 111 12356788899999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~ 284 (342)
|+.+.. +.+.++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 998753 467788889999999999999999886 78887764
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.13 E-value=8.6e-11 Score=112.23 Aligned_cols=120 Identities=22% Similarity=0.180 Sum_probs=85.1
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..|+|++|||||+|+||+++|+.| +.+|++|+++++...+.... ... .+.. ..+.++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~-A~~------------~G~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK-AEA------------DGFE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH-HHH------------CCCe-eCCHHHHHhcCCEE
Confidence 468999999999999999999998 79999999887764322111 000 1112 24889999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM 305 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~ 305 (342)
++++|.+.. ..+++++.+..|++|++| -.+-|--+.. +. ..-+..+||+...|..
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~--~~------~~p~~~~~Vi~vaPn~ 132 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF--GQ------IVPPADVDVIMVAPKG 132 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh--ce------eccCCCCcEEEeCCCC
Confidence 999997655 777778888999999988 4555522211 10 1124557888888753
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.10 E-value=5.1e-10 Score=106.31 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=88.6
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~ 243 (342)
+|||||+|.||+.+|++| ...|.+|.+||++++... .+. . .+.....+++++++. +|+|+++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~-~~~--------~-----~g~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVE-ALA--------E-----EGATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHH-HHH--------H-----CCCeecCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 578999999999976432 111 1 112234688888876 6999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
+|..+.++.++ ...+..+++|.++||++++.......+.+.+++..+.
T Consensus 67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 99877777776 4677889999999999999999999999999887654
No 43
>PLN02712 arogenate dehydrogenase
Probab=99.08 E-value=4.3e-10 Score=117.24 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=84.6
Q ss_pred cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cC
Q 019328 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA 237 (342)
Q Consensus 159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~s 237 (342)
.|+++.+++|||||+|.||+.+|+.+ +.+|++|++||++.... . ... .+.....+++++++ .+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-a~~------------~Gv~~~~~~~el~~~~a 426 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E-AQK------------LGVSYFSDADDLCEEHP 426 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H-HHH------------cCCeEeCCHHHHHhcCC
Confidence 35678999999999999999999998 68899999999985321 1 011 11123468888876 58
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
|+|++|+| ...+..++.+-....||+|+++++++.++-...+.+.+.+..
T Consensus 427 DvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 427 EVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred CEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 99999999 467888777655557999999999999884444555555444
No 44
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.02 E-value=1e-09 Score=110.35 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=99.6
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~ 243 (342)
+||+||+|.||+.+|++|+ .-|.+|.+|||++++. +.+.+.. ...+... .....+++++++. +|+|++|
T Consensus 8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 6999999999999999984 6799999999997653 2222110 0001110 1134688898876 9999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
+|..+.+..++ ...+..+++|.++||+|+...-+...+.+.+++..+.....=|.-.++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99999999888 568889999999999999999999999999998877766555665555
No 45
>PLN02256 arogenate dehydrogenase
Probab=99.00 E-value=5e-09 Score=99.63 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=90.1
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~ 241 (342)
-++++|||||+|.||+.+|+.+ +..|.+|++||++.... ....+ +.....++++++ ..+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~---~a~~~------------gv~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSD---IAAEL------------GVSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHH---HHHHc------------CCeeeCCHHHHhhCCCCEEE
Confidence 4667999999999999999997 67899999999885321 11111 112245788876 4799999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----CCccCCCceEE
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV 317 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----~~L~~~~nvi~ 317 (342)
+|+|. ..+..++.+-....+++++++++++.+.-...+++.+.+..+. .+...=|... ...+.-.++++
T Consensus 98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~ 170 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVY 170 (304)
T ss_pred EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEE
Confidence 99994 4566666543356789999999999976554555665554321 2222334221 13455566777
Q ss_pred cCCC
Q 019328 318 VPHI 321 (342)
Q Consensus 318 TPHi 321 (342)
+|+.
T Consensus 171 ~~~~ 174 (304)
T PLN02256 171 DKVR 174 (304)
T ss_pred ecce
Confidence 7653
No 46
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.98 E-value=2e-09 Score=101.91 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=88.5
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl 246 (342)
+|||||+|+||..+|+.| ...|.+|.+||++++. +.+.. .+.....+..+++++||+|++|+|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~~-------------~g~~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELLS-------------LGAVSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHHH-------------cCCeecCCHHHHHhcCCEEEEeCCC
Confidence 699999999999999998 5778999999987632 22111 1122346888999999999999998
Q ss_pred CcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328 247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 247 t~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD 297 (342)
.++.+..+.. ..+..+++|.++|++|....-....+.+.+.+..+. .+|
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 8777776632 357778999999999999999999999998876443 445
No 47
>PLN02858 fructose-bisphosphate aldolase
Probab=98.94 E-value=3.5e-09 Score=118.01 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=95.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
..++||+||+|.||..||++| ..-|.+|.+||+++.+. +.+.+ .+.....++.++.++||+|++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~~-------------~Ga~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKFCE-------------LGGHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH-------------cCCeecCCHHHHHhcCCEEEEE
Confidence 357899999999999999998 47799999999987643 22211 1223457999999999999999
Q ss_pred CCCCccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328 244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 244 lplt~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD 297 (342)
+|..++.+.++ ....++.+++|.++|++|+..+-....+.+.+++..-...-+|
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD 123 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD 123 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988887 3567888999999999999999999999999987651123455
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.94 E-value=3.4e-09 Score=106.27 Aligned_cols=128 Identities=15% Similarity=0.227 Sum_probs=98.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh---cCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sDiV~l 242 (342)
.+|||||+|.||..+|++| ..-|.+|.+|||+++... .+.+. ....+.......+++++++ ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~-~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTE-EFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 477899999999987532 22110 0000111123568999886 5899999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
++|....++.++ ++.+..+++|.++|+++.+..-|...+.+.+.+..+.....=|.-.++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888888888 567788999999999999999999999999998877655544555444
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=98.92 E-value=4.1e-09 Score=117.45 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=90.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
+.++|||||+|.||..+|++| ...|.+|++||+++.... .+.. . +.....++.+++++||+|++|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l~~--------~-----Ga~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-RFEN--------A-----GGLAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHHH--------c-----CCeecCCHHHHHhcCCEEEEe
Confidence 348899999999999999998 588999999999876432 1111 1 112246889999999999999
Q ss_pred CCCCccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 244 lplt~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
+|..++++.++ ....++.+++|.++||+|+..+-..+.+.+.+.+
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 99999998887 3467889999999999999999888999999887
No 50
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.91 E-value=1.2e-08 Score=96.63 Aligned_cols=118 Identities=25% Similarity=0.247 Sum_probs=78.9
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhccCCCC-------Cccc-cccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQ-------PVTW-KRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~-~~~~~l~ell~ 235 (342)
++|||||+|.||..+|+.++ ..|.+|++||+++...... .....-..+...+.. ..+. ....+. +.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 68999999999999999984 7799999999987643210 000000000000100 0001 112344 5679
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHc
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~ 288 (342)
.||+|+.|+|..++.+..+..+..+.++++++|+ |+|.-. ...+.+.+..
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~ 133 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR 133 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence 9999999999999999888888778899999987 777664 4556666653
No 51
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.91 E-value=1e-08 Score=97.33 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=84.2
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH---hhcCCEEEEc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISLH 243 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~sDiV~l~ 243 (342)
+|||||+|.||..+|+.| ...|.+|.+|||++... +.+.+ .+ .....+++++ +..+|+|+++
T Consensus 2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l~~--------~g-----~~~~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAMKE--------DR-----TTGVANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------cC-----CcccCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 46799999999997653 22111 11 1112355554 4568999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
+|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 67 vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 67 VPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred cCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 9976 777776 4667789999999999999999999999999876654
No 52
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.87 E-value=6.1e-09 Score=96.60 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=94.4
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
....++||+||+|.||..++..| -..|.+|.+|||+.++.. .|.+ .+.....++.|+.+.||+|+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~~-~f~~-------------~Ga~v~~sPaeVae~sDvvi 96 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKCK-EFQE-------------AGARVANSPAEVAEDSDVVI 96 (327)
T ss_pred CcccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHHH-HHHH-------------hchhhhCCHHHHHhhcCEEE
Confidence 45688999999999999999998 578999999999987642 2211 22344679999999999999
Q ss_pred EcCCCCcccccccC--HhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCc
Q 019328 242 LHPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 242 l~lplt~~t~~li~--~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i 291 (342)
.++|...+.++++. ...++..++|... |+.|+-+.--...|.+++.....
T Consensus 97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 99999999998873 4578888888777 89999988888899999987643
No 53
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.86 E-value=6.2e-09 Score=98.21 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=85.1
Q ss_pred EEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019328 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (342)
Q Consensus 170 IiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~ 249 (342)
|||+|.||..+|+.| ...|.+|.+|||++.... .+. .. +.....++.+++++||+|++|+|...+
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l~--------~~-----g~~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAVE-EAV--------AA-----GAQAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHHH-HHH--------Hc-----CCeecCCHHHHHhcCCEEEEeCCChHH
Confidence 689999999999998 577999999999876432 111 11 122346889999999999999998777
Q ss_pred cccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328 250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 250 t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD 297 (342)
++.++. ...+..+++|.++||++..++-..+.+.+.+++..+. .+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 777763 4567789999999999988877778888888765443 355
No 54
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.86 E-value=2.5e-08 Score=99.43 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=95.9
Q ss_pred CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
++|+||| +|.||+.+|+.| +..|.+|.+|++++.... ...... +.....++++.+++||+|++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~-~~a~~~------------gv~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGK-EVAKEL------------GVEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHH-HHHHHc------------CCeeccCHHHHhccCCEEEEec
Confidence 3799997 999999999997 678999999999865321 111111 1122357888899999999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CCCCccCCCceEEcCCCC
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIA 322 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPHia 322 (342)
|. ..+..++ ++....+++++++++++.......+++.+.+..+ ..+...-|. |..+++.-..+++||+-+
T Consensus 67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~------~~~V~~HPmaGp~~~~~~g~~~il~p~~~ 138 (437)
T PRK08655 67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG------VEILPTHPMFGPRTPSLKGQVVILTPTEK 138 (437)
T ss_pred CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC------CEEEEcCCCCCCCCcccCCCEEEEecCCC
Confidence 95 3445544 5566778999999999986544445555554432 123333443 334677778899999753
Q ss_pred CCcHHHHHHH
Q 019328 323 SASKWTREGM 332 (342)
Q Consensus 323 ~~t~~~~~~~ 332 (342)
.+.+..+.+
T Consensus 139 -~~~~~~~~v 147 (437)
T PRK08655 139 -RSNPWFDKV 147 (437)
T ss_pred -CCHHHHHHH
Confidence 344444333
No 55
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.85 E-value=8.8e-09 Score=98.28 Aligned_cols=98 Identities=24% Similarity=0.241 Sum_probs=69.3
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
|+||+|||||+|+||+++|+.| +.+|++|+++++......+... . .+.. ..+..+++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~-~------------~Gv~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT-E------------DGFK-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH-H------------CCCE-ECCHHHHHhcCCEEEE
Confidence 5799999999999999999998 6889998776554322211110 0 1111 2468889999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
++|... ....+.++....|+++. +|.++-|=-+
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence 999332 34445566778899886 7888777644
No 56
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.82 E-value=3.9e-08 Score=92.37 Aligned_cols=140 Identities=14% Similarity=0.197 Sum_probs=85.8
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl 246 (342)
+|||||+|.||+++|+.| +..|.+|++||+++....... ..+... ....+. +.+++||+|++|+|.
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a~---------~~g~~~---~~~~~~-~~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERAI---------ERGLVD---EASTDL-SLLKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHH---------HCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence 799999999999999998 567999999999865422110 011100 111233 467899999999994
Q ss_pred CcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----------CCccCCCceE
Q 019328 247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKNAI 316 (342)
Q Consensus 247 t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~~~nvi 316 (342)
.. +..+ -++....+++++++++++.-.. . ..+++....-. +..--|... ..|+.-.+++
T Consensus 68 ~~-~~~~-~~~l~~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~-----~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 68 GL-LLPP-SEQLIPALPPEAIVTDVGSVKA---P-IVEAWEKLHPR-----FVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred HH-HHHH-HHHHHHhCCCCcEEEeCcchHH---H-HHHHHHHhhCC-----ceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 33 3333 3566677899999999887552 2 33333322111 111113211 1267778899
Q ss_pred EcCCCCCCcHHHHHHH
Q 019328 317 VVPHIASASKWTREGM 332 (342)
Q Consensus 317 ~TPHia~~t~~~~~~~ 332 (342)
+||+-.+ +.+..+.+
T Consensus 137 l~p~~~~-~~~~~~~v 151 (279)
T PRK07417 137 LTPTENT-DLNALAIV 151 (279)
T ss_pred EccCCCC-CHHHHHHH
Confidence 9997653 44444433
No 57
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.82 E-value=1.8e-08 Score=101.00 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=91.9
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEEEEc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH 243 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV~l~ 243 (342)
.|||||+|.||+.+|++| ..-|.+|.+|||++++. +.+.+.+ ..+.......+++++. +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~~~--------~~g~~~~~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLAEH--------AKGKKIVGAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHhhc--------cCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence 389999999999999998 46799999999998653 2221110 0000112235677766 468999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 302 (342)
+|..+.+..++ .+.+..+++|.++||++....-|...+.+.+.+..+.....=|.-.+
T Consensus 71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 99877788877 46778899999999999999999999999998876654433344443
No 58
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.81 E-value=4.4e-08 Score=93.26 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=88.5
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
.++|||||+|.||+.+|+.+ +..| .+|++||+++...... .. .+ .......++++.+++||+|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~a--~~-------~g---~~~~~~~~~~~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRARA--RE-------LG---LGDRVTTSAAEAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHHH--Hh-------CC---CCceecCCHHHHhcCCCEEEE
Confidence 46899999999999999997 4556 4899999987542111 01 11 111123467888999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeec---CCCCC-CC---CCCccCCCce
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV---FEDEP-YM---KPGLSEMKNA 315 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV---~~~EP-~~---~~~L~~~~nv 315 (342)
|+|.. .+..+ .++....++++.++++++....--.+++.+.+..+ +. .+.. +..|- .+ ..+|+.-.++
T Consensus 73 avp~~-~~~~v-~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~ 147 (307)
T PRK07502 73 CVPVG-ASGAV-AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-VH--FIPGHPLAGTEHSGPDAGFAELFENRWC 147 (307)
T ss_pred CCCHH-HHHHH-HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-Ce--EEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence 99953 23333 34555678999999999765421122222222211 11 2222 11111 01 1257777789
Q ss_pred EEcCCCCCCcHHHHHHH
Q 019328 316 IVVPHIASASKWTREGM 332 (342)
Q Consensus 316 i~TPHia~~t~~~~~~~ 332 (342)
++||+-++ +.++.+.+
T Consensus 148 ~l~~~~~~-~~~~~~~~ 163 (307)
T PRK07502 148 ILTPPEGT-DPAAVARL 163 (307)
T ss_pred EEeCCCCC-CHHHHHHH
Confidence 99997543 44554443
No 59
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=5.2e-08 Score=93.22 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=97.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhccCCCC----CccccccCCHHHHhhcCCE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV 239 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~sDi 239 (342)
++|||||.|.||..+|..++ ..|++|..||+++..... ......-..+...+.. ........++++.++.||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999999999999999974 789999999998754211 1111000001111100 0011234689999999999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcC
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TP 319 (342)
|+-++|.+.+.++-+.++.-+.++++++| .++.. -+...++.+.++. +-...++=-|.+ +.--||.+ |+-+|
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~HffnP--~~~~pLVE---Vv~g~ 158 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGHPFNP--VYLLPLVE---VLGGE 158 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEecCCc--cccCceEE---EeCCC
Confidence 99999999999998888898999999855 44444 3467778887754 223333333322 11123333 56666
Q ss_pred CCCCCcHHH
Q 019328 320 HIASASKWT 328 (342)
Q Consensus 320 Hia~~t~~~ 328 (342)
+.+-.+.+.
T Consensus 159 ~T~~e~~~~ 167 (321)
T PRK07066 159 RTAPEAVDA 167 (321)
T ss_pred CCCHHHHHH
Confidence 655444333
No 60
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.80 E-value=5.2e-08 Score=91.91 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=84.1
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc---cCCCCC--------ccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~l~ell 234 (342)
++|+|||.|.||..+|..++ ..|.+|++||+++..... .......... ..+... .......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQLES-AQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 58999999999999999974 679999999998764221 1110000000 000000 0012246788999
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCccEEEeecC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 299 (342)
++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-++ ..+.+.++. .-...++..|
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 9999999999987777766656667778999877 78887554 556666543 3334566666
No 61
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.79 E-value=8.7e-08 Score=93.25 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=83.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
.-.||+|||+ |.||+++|+.|.+.+|.+|++||+... ...++++.+++||+|++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil 57 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF 57 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence 4568999999 999999999984346999999998421 12467888999999999
Q ss_pred cCCCCcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC---CCCccCCCceEE
Q 019328 243 HPVLDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIV 317 (342)
Q Consensus 243 ~lplt~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvi~ 317 (342)
|+|.. .+..++.+ .....+|+++++++++.-. ..+.+++.... .++...-|.. .+.+++-.++++
T Consensus 58 avPv~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK----~~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~il 127 (370)
T PRK08818 58 SAPIR-HTAALIEEYVALAGGRAAGQLWLDVTSIK----QAPVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVV 127 (370)
T ss_pred eCCHH-HHHHHHHHHhhhhcCCCCCeEEEECCCCc----HHHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEE
Confidence 99943 34444422 1223489999999998766 22333332211 1233444532 246777788999
Q ss_pred cCC
Q 019328 318 VPH 320 (342)
Q Consensus 318 TPH 320 (342)
||.
T Consensus 128 tp~ 130 (370)
T PRK08818 128 CEA 130 (370)
T ss_pred eCC
Confidence 997
No 62
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.77 E-value=1.6e-08 Score=96.27 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+++|||||+|.||+.+|++| ...|.+|.+|+|+.. .++++++++||+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 457899999999999999998 578999999998632 3678889999999999
Q ss_pred CCCCcccccccCHhHHc-cCCCCcEEEecCCCccC
Q 019328 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPVI 277 (342)
Q Consensus 244 lplt~~t~~li~~~~l~-~mk~gailIN~sRG~~v 277 (342)
+|. +..+.++.. ... .+++++++|++++|-..
T Consensus 55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcccC
Confidence 996 467776633 222 47899999999885443
No 63
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.77 E-value=6.7e-08 Score=96.04 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=92.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC---CccccccCCHHHHhhcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ell~~sDiV~l 242 (342)
.+|||||+|.||..+|..++ . |.+|++||+++.+. +.+..+...+.+ .+.. ..+....++..+.+++||++++
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~~G~~~~~e-~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELKNGVDVNLE-TTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHHCcCCCCCC-CCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 68999999999999999974 3 68999999997652 222211000000 0000 0001112333456899999999
Q ss_pred cCCCCc------cccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHH-Hc--CCccEE-EeecCCCCCCCC----
Q 019328 243 HPVLDK------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRV-GLDVFEDEPYMK---- 306 (342)
Q Consensus 243 ~lplt~------~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL-~~--g~i~ga-alDV~~~EP~~~---- 306 (342)
|+|... +...++ .+...+.+++|.++|+.|+-.+--.+.+++.+ ++ |...+- -.=+|.+||...
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK 162 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence 999652 334444 24566789999999999999998888765554 33 221111 111567898743
Q ss_pred CCccCCCceEE
Q 019328 307 PGLSEMKNAIV 317 (342)
Q Consensus 307 ~~L~~~~nvi~ 317 (342)
..+.+.|+++.
T Consensus 163 ~~~~~~~riv~ 173 (425)
T PRK15182 163 HRLTNIKKITS 173 (425)
T ss_pred ccccCCCeEEE
Confidence 35777787765
No 64
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.76 E-value=3.8e-08 Score=93.28 Aligned_cols=104 Identities=30% Similarity=0.410 Sum_probs=87.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
-+.||++-|.|||-.|+.+|+++ +++|++|++..-.|-...++..++| ....+++....+|+++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi 269 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV 269 (420)
T ss_pred eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence 58999999999999999999997 8999999999887766665544433 3467999999999999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHH
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH 285 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~a 285 (342)
.+.- ++++|..+.|..||+|+++-|.+.=.+ ||.+.|.+-
T Consensus 270 T~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~ 310 (420)
T COG0499 270 TATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL 310 (420)
T ss_pred EccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence 8854 688999999999999999999997665 677776643
No 65
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.75 E-value=2.7e-08 Score=77.97 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=63.2
Q ss_pred EEEEEccChHHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
||||||+|+||..+++.+ ...| .+|+ +++|++++. .++.+.++ ... ...+..+++++||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~~----------~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEYG----------VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHCT----------TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhhc----------ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999997 5778 8999 558987653 22222221 111 12378999999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
++| |+...-+-.+. ....++.++|++.-|
T Consensus 68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 999 54443344444 666789999988654
No 66
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.75 E-value=3.7e-07 Score=85.58 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=109.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++++.+.+. +..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (285)
T PRK14189 55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHV 124 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCCh
Confidence 34556788887655443 356777776553 24678998754 345543 33333222 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChH-HHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~I-G~~vA 181 (342)
. ..|-...+.++ ....++.-++.++ ++ .+.++.||++.|||.|.+ |+.+|
T Consensus 125 ~---n~g~l~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvViGrs~iVGkPla 175 (285)
T PRK14189 125 A---NAGALMTGQPL-FRPCTPYGVMKML----ES---------------------IGIPLRGAHAVVIGRSNIVGKPMA 175 (285)
T ss_pred h---hhhHhhCCCCC-CcCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 0 11111112222 3445555544333 11 135899999999999999 99999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ...|+.|..+..+ ..++.+.+++||+|+.+++ +.++|+. +.
T Consensus 176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ 219 (285)
T PRK14189 176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM 219 (285)
T ss_pred HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence 998 6899999886532 1368899999999999999 4578887 55
Q ss_pred CCCCcEEEecCCCcc
Q 019328 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~gailIN~sRG~~ 276 (342)
+|+|+++||+|.-.+
T Consensus 220 ik~gavVIDVGin~~ 234 (285)
T PRK14189 220 VKPGATVIDVGMNRD 234 (285)
T ss_pred cCCCCEEEEcccccc
Confidence 789999999996553
No 67
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.75 E-value=7.4e-08 Score=93.78 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=89.5
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++|||||+|.||+++|+.| +..|.+|.+|++++.........+ .........++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~a~~----------~~~~~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLARALG----------FGVIDELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHHHhc----------CCCCcccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999997 677877777776654321111000 01111123578889999999999999
Q ss_pred CCcccccccCHhHHc-cCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----------CCccCCCc
Q 019328 246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN 314 (342)
Q Consensus 246 lt~~t~~li~~~~l~-~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~~~n 314 (342)
. ..+..++. +... .+++++++++++.-..--.+++.+.+.. ... .++. -|.+. ..|+.-..
T Consensus 70 ~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~ 141 (359)
T PRK06545 70 V-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGG---HPMAGSHKSGVAAARADLFENAP 141 (359)
T ss_pred H-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEee---CCcCcCchhhHHHhcHHHHCCCc
Confidence 5 34555553 3333 4889999999988764333333333221 111 2222 24321 24677777
Q ss_pred eEEcCCCCCCcHHHHHHHH
Q 019328 315 AIVVPHIASASKWTREGMA 333 (342)
Q Consensus 315 vi~TPHia~~t~~~~~~~~ 333 (342)
.++||+-.. +.+..+.+.
T Consensus 142 ~il~~~~~~-~~~~~~~v~ 159 (359)
T PRK06545 142 WVLTPDDHT-DPDAVAELK 159 (359)
T ss_pred EEEecCCCC-CHHHHHHHH
Confidence 899997543 444444433
No 68
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.73 E-value=9.7e-08 Score=94.71 Aligned_cols=110 Identities=23% Similarity=0.223 Sum_probs=76.6
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH------------
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 233 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------ 233 (342)
++|+|||+|.||..+|..|+ ..|.+|++||+++.... .... +..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v~-~l~~---------g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAVD-TINR---------GEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHHH-HHHC---------CCCCc---CCCCHHHHHHHHhhcCceee
Confidence 68999999999999999984 67999999999876432 2110 11110 11233333
Q ss_pred ---hhcCCEEEEcCCCC------ccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 234 ---l~~sDiV~l~lplt------~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
++.||+|++|+|.. ++...+. -+.....+++|+++|+.|.-.+--.+.+...+.+.
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34799999999954 2222332 24566778999999999998888888888777653
No 69
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.73 E-value=1.4e-07 Score=88.59 Aligned_cols=149 Identities=23% Similarity=0.221 Sum_probs=92.2
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcE--EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHhhcCCEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMN--LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 241 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~sDiV~ 241 (342)
-++|+|+|+|.||+++|+.+ +.-|.. |+++|++......+ ...+.......+. .+.+..||+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence 46899999999999999997 566665 46666665432221 1112222222233 66778899999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----CCccCCCceEE
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV 317 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----~~L~~~~nvi~ 317 (342)
+++|-. .|..++ ++....+|+|+++++++.-.----+++.+.+.++ . .+...-|... .+++.-..+|+
T Consensus 70 vavPi~-~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----~-~~vg~HPM~G~~~~~~lf~~~~~vl 141 (279)
T COG0287 70 VAVPIE-ATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGD-----V-RFVGGHPMFGPEADAGLFENAVVVL 141 (279)
T ss_pred EeccHH-HHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCC-----C-eeEecCCCCCCcccccccCCCEEEE
Confidence 999943 344433 4445589999999999886643333444433221 1 3334456433 37888888999
Q ss_pred cCCCCCCcHHHHHHHHHH
Q 019328 318 VPHIASASKWTREGMATL 335 (342)
Q Consensus 318 TPHia~~t~~~~~~~~~~ 335 (342)
||.-... .+...++.+.
T Consensus 142 tp~~~~~-~~~~~~~~~~ 158 (279)
T COG0287 142 TPSEGTE-KEWVEEVKRL 158 (279)
T ss_pred cCCCCCC-HHHHHHHHHH
Confidence 9975443 4444444443
No 70
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.72 E-value=5.6e-08 Score=94.98 Aligned_cols=103 Identities=18% Similarity=0.358 Sum_probs=75.3
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
.+.++++.|+|.|.+|+.+++.+ +++|++|.++|+++... +.....++... ........++.+.++++|+|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~g~~v------~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEFGGRI------HTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhcCcee------EeccCCHHHHHHHHccCCEEE
Confidence 46788999999999999999996 79999999999986532 21111111100 000111235778889999999
Q ss_pred EcCCCC-cccccccCHhHHccCCCCcEEEecC
Q 019328 242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 242 l~lplt-~~t~~li~~~~l~~mk~gailIN~s 272 (342)
.+++.+ ..+..+++++.++.||+++++||++
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 998653 3356789999999999999999987
No 71
>PLN02712 arogenate dehydrogenase
Probab=98.72 E-value=3.7e-08 Score=102.86 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=72.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV 240 (342)
.-+-++|||||+|.||+.+|+.| +.+|.+|++||++..... ...+ +.....++++++ .+||+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~---A~~~------------Gv~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLA---ARSL------------GVSFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH---HHHc------------CCEEeCCHHHHhhcCCCEE
Confidence 44557899999999999999997 688999999999743211 1111 112245788866 569999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
++|+|. ..+..++..-.+..|++|++++|++.-.
T Consensus 113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence 999994 4677777665456799999999997544
No 72
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.70 E-value=1.6e-08 Score=99.32 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=67.2
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC------hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 234 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 234 (342)
..|+||||+|||+|.+|+.-|..| +-.|.+|.+--|. .+..... .. .++ ...+++|++
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~kA---------~~-----dGF-~v~~~~Ea~ 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRKA---------TE-----NGF-KVGTYEELI 95 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHHH---------Hh-----cCC-ccCCHHHHH
Confidence 569999999999999999555554 4555555421111 1111000 00 112 236899999
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
++||+|++.+|++ + ++.+.++.+..||+|+.|. .|.|=-|
T Consensus 96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487)
T PRK05225 96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487)
T ss_pred HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence 9999999999988 3 7788899999999999886 4555433
No 73
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.68 E-value=1.9e-07 Score=91.42 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..++||||| +|.||+++|+.| +..|..|.+||++.. .+.++++++||+|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence 568999999 999999999998 677999999997421 246678899999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
|+|... +..++ ++... +++|+++++++.-.
T Consensus 149 avP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK 178 (374)
T PRK11199 149 SVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVK 178 (374)
T ss_pred eCcHHH-HHHHH-HHHhC-CCCCcEEEECCCcc
Confidence 999654 45544 33444 89999999997755
No 74
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.68 E-value=5.2e-07 Score=85.08 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=96.2
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh----hhhhccCCCC--------CccccccCCHHHH
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLKANGEQ--------PVTWKRASSMDEV 233 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~l~el 233 (342)
++|+|||.|.||..+|..++ ..|.+|+.||++.+..... .+.. .......... ........++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKA-KERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHH-HHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 58999999999999999974 5689999999987532111 1000 0000000000 0011234688899
Q ss_pred hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK 313 (342)
Q Consensus 234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~ 313 (342)
++.||+|+.++|...+.+.-+-++..+.++++++|+..+.+ +....+.+.++... .-.++-. .+|.+..|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~ 151 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNN 151 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCC
Confidence 99999999999976666666556666778999988543322 34456666665322 2233221 23456778
Q ss_pred ceEEcCCCCCCcHHHHHHHHHH
Q 019328 314 NAIVVPHIASASKWTREGMATL 335 (342)
Q Consensus 314 nvi~TPHia~~t~~~~~~~~~~ 335 (342)
.|.++||-. .+.++.+.+...
T Consensus 152 lvevv~~~~-t~~~~~~~~~~~ 172 (287)
T PRK08293 152 TAEIMGHPG-TDPEVFDTVVAF 172 (287)
T ss_pred eEEEeCCCC-CCHHHHHHHHHH
Confidence 888888754 345555554443
No 75
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.67 E-value=2.7e-07 Score=82.58 Aligned_cols=111 Identities=20% Similarity=0.318 Sum_probs=78.8
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCC
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD 238 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD 238 (342)
+.+++||+++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.++ .. ..+.++++. +||
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~g------------~~-~v~~~~l~~~~~D 87 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELFG------------AT-VVAPEEIYSVDAD 87 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHcC------------CE-EEcchhhccccCC
Confidence 3579999999999999999999998 68999999999986532 22211111 11 123455554 799
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
+++.|.. .++|+++.++.|+. .+++.-+-+.+-| ..-.+.|++..+.
T Consensus 88 v~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 88 VFAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred EEEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 9986655 36889999999974 4788888887766 4455666666543
No 76
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.66 E-value=5.2e-08 Score=83.32 Aligned_cols=94 Identities=27% Similarity=0.286 Sum_probs=62.8
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHH-HHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
|+||+|+|||||..|+.-|..| +..|.+|++-.+..++.. .+..+ ++ ...+.+|++++||+|+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~~~--------------Gf-~v~~~~eAv~~aDvV~ 65 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAKAD--------------GF-EVMSVAEAVKKADVVM 65 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHHHT--------------T--ECCEHHHHHHC-SEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHHHC--------------CC-eeccHHHHHhhCCEEE
Confidence 6799999999999999999998 789999998776654221 11111 12 2468999999999999
Q ss_pred EcCCCCccccc-ccCHhHHccCCCCcEEEecCCCc
Q 019328 242 LHPVLDKTTYH-LINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 242 l~lplt~~t~~-li~~~~l~~mk~gailIN~sRG~ 275 (342)
+.+| ++... ++.++....||+|+.|+ .+.|-
T Consensus 66 ~L~P--D~~q~~vy~~~I~p~l~~G~~L~-fahGf 97 (165)
T PF07991_consen 66 LLLP--DEVQPEVYEEEIAPNLKPGATLV-FAHGF 97 (165)
T ss_dssp E-S---HHHHHHHHHHHHHHHS-TT-EEE-ESSSH
T ss_pred EeCC--hHHHHHHHHHHHHhhCCCCCEEE-eCCcc
Confidence 9999 44444 44577778999999877 44443
No 77
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.64 E-value=3.9e-07 Score=84.73 Aligned_cols=104 Identities=30% Similarity=0.367 Sum_probs=73.2
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCc----EEEEE-cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+|||||+|+||..+++.|. .-|. +|++| +|++... +.+. . .+.....+..+++++||+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~~-~------------~g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVFQ-S------------LGVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHHH-H------------cCCEEeCChHHHHhcCCEE
Confidence 37999999999999999984 5565 88888 8876542 2211 1 1122345788889999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
++|+| ....+.++ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 99997 45566655 3455667899999988665 466666665543
No 78
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.63 E-value=1.2e-07 Score=89.51 Aligned_cols=169 Identities=19% Similarity=0.194 Sum_probs=106.1
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccChh
Q 019328 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (342)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~~ 103 (342)
..++.|.+.+....++ ..+++++.+.+. +.+|++++..+ ..+++. +++..+-. |=| -|+....+-
T Consensus 57 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDV----DGl~~~N~g 129 (301)
T PRK14194 57 RAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDV----DGFHSENVG 129 (301)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hcc----CccChhhhh
Confidence 4456788776554433 357777776653 24689998754 345543 33333221 211 111111111
Q ss_pred HHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHHH
Q 019328 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (342)
Q Consensus 104 ~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA~ 182 (342)
.. ..+.++ ....++.-++.++- ..+.++.||+|+|||.| .||+.+|.
T Consensus 130 ~l------~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~V~vIG~s~ivG~PmA~ 177 (301)
T PRK14194 130 GL------SQGRDV-LTPCTPSGCLRLLE-------------------------DTCGDLTGKHAVVIGRSNIVGKPMAA 177 (301)
T ss_pred HH------hcCCCC-CCCCcHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCccHHHHHH
Confidence 11 111222 34455555554431 11358999999999996 99999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccC
Q 019328 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (342)
Q Consensus 183 ~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~m 262 (342)
+| ..-|+.|.+|+++. .++.++.++||+|+++++.. +++.... +
T Consensus 178 ~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---i 221 (301)
T PRK14194 178 LL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---L 221 (301)
T ss_pred HH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---c
Confidence 98 57799999997642 36888999999999999954 3455544 7
Q ss_pred CCCcEEEecCCCc
Q 019328 263 KKEAILVNCSRGP 275 (342)
Q Consensus 263 k~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 222 k~GaiVIDvgin~ 234 (301)
T PRK14194 222 KPGAVVIDVGINR 234 (301)
T ss_pred cCCcEEEEecccc
Confidence 9999999998554
No 79
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.61 E-value=1.6e-06 Score=81.43 Aligned_cols=170 Identities=16% Similarity=0.251 Sum_probs=107.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+.. .+|++++..+ ..+++. +++..+-. |=| -|+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDV----DGl~~~n~ 127 (286)
T PRK14175 55 KAAEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDV----DGFHPINI 127 (286)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc----ccCCccch
Confidence 34556788877655443 3467777765531 3679998754 335543 33333221 211 11111111
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
|-...+.++ ....++.-++.++- ..+.++.||++.|||.|. +|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~ai~~ll~-------------------------~~~i~l~Gk~vvVIGrs~~VG~pla 175 (286)
T PRK14175 128 ------GKLYIDEQT-FVPCTPLGIMEILK-------------------------HADIDLEGKNAVVIGRSHIVGQPVS 175 (286)
T ss_pred ------HhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCchhHHHHH
Confidence 111112232 34455555544431 013479999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ...|++|..++++. .++.+.+++||+|+.+++- .++|.++.
T Consensus 176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~--- 219 (286)
T PRK14175 176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV--- 219 (286)
T ss_pred HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence 998 68899999887531 3678889999999999984 44687764
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
+|+|+++||+|--.
T Consensus 220 vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 VKEGAVIIDVGNTP 233 (286)
T ss_pred cCCCcEEEEcCCCc
Confidence 58999999998644
No 80
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.61 E-value=2.8e-07 Score=86.55 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
+.+|||||+|+||+.+|+.|. .-| .+|++++|+..+..+.+...++ .....+..+++.+||+|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~g------------~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKYG------------VKGTHNKKELLTDANIL 69 (279)
T ss_pred CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhcC------------ceEeCCHHHHHhcCCEE
Confidence 468999999999999999974 444 6899999976433333222111 12235778889999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
++++|. .+....+ .+....++++.++|++.-|- ..+.+.+.+..
T Consensus 70 ilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~ 113 (279)
T PRK07679 70 FLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK 113 (279)
T ss_pred EEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence 999993 3344444 44455678899999986553 55666666543
No 81
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.60 E-value=1.1e-05 Score=81.48 Aligned_cols=234 Identities=21% Similarity=0.204 Sum_probs=126.9
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecC--CCCCCCHHHHHHH---h-----cCCccEEEecCCcCccHHHHHHhh
Q 019328 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQ--KKTILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALS 83 (342)
Q Consensus 14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~---~-----~~~~d~~i~~~~~~~~~~~~~~~~ 83 (342)
+..||-+|. +..+.|.+.|+++.+... ....++.++..+. + -+.+|+|+- ...+ +++.++.++
T Consensus 11 ~E~RVAltP-----~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~P-~~~e~~~l~ 83 (511)
T TIGR00561 11 NECRVAATP-----KTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNAP-SDAEIAELP 83 (511)
T ss_pred CCeeeccCH-----HHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCCC-CHHHHHhcC
Confidence 455554333 235677788888765433 1223455554431 0 013576652 1222 344466665
Q ss_pred ccCCceEEEcccccCccChhHHHhCCceEEcCCCCC--c--------hhHHHHHHHHHHHHHhchHHHHHHHH---cCCC
Q 019328 84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMR---AGLY 150 (342)
Q Consensus 84 ~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~--~--------~~vAE~al~l~L~~~R~~~~~~~~~~---~g~w 150 (342)
. |--+|+...-..|.=-++++.++||.+..---.. + .++|+.+= .|-.....+.+- .|.-
T Consensus 84 ~-g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~lgr~~~g~~ 156 (511)
T TIGR00561 84 A-GKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEFGRFFTGQI 156 (511)
T ss_pred C-CCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHhhhhcCCce
Confidence 5 2234444333334334577788998877622111 1 22333322 222222211111 1110
Q ss_pred CCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-----ccCCCCCcccc
Q 019328 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWK 225 (342)
Q Consensus 151 ~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 225 (342)
-..| .+.+.++.|+|.|.+|...++.+ +++|++|.++|++...... ...++... ...+...-++.
T Consensus 157 ------taag-~vp~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rle~--a~~lGa~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 157 ------TAAG-KVPPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQ--VQSMGAEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred ------ecCC-CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCCeEEeccccccccccccce
Confidence 0112 45679999999999999999986 7999999999998764221 12222111 00011111111
Q ss_pred ccCC----------HHHHhhcCCEEEEcC--CCCcccccccCHhHHccCCCCcEEEecC
Q 019328 226 RASS----------MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 226 ~~~~----------l~ell~~sDiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
...+ +.+.++++|+|+.++ |..+ .-.++.++.++.||||+++||++
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 1112 456678899998886 4322 34789999999999999999986
No 82
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.60 E-value=2e-06 Score=80.55 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=107.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++.+..++ ..+++++.+.+. +..|++++..+ ..+++.. ++..+-. |= +|.+.-
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (284)
T PRK14179 55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KD-------VDGFHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCH
Confidence 44566788887655543 356777776553 14689998754 3444433 3332221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc-ChHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~-G~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++- ..+.++.||+++|||. |.+|+.+|
T Consensus 125 ~---N~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 125 M---NTGHLWSGRPV-MIPCTPAGIMEMFR-------------------------EYNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred h---hHHHHhCCCCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence 0 11111122333 35566666554441 1235899999999999 99999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..|... ..++.+.+++||+|+.+++... ++....
T Consensus 176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~~~----~v~~~~--- 219 (284)
T PRK14179 176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGRGH----FVTKEF--- 219 (284)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCccc----cCCHHH---
Confidence 998 5679999988321 1368899999999999999543 455544
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
+|+|+++||+|--.
T Consensus 220 ik~GavVIDvgin~ 233 (284)
T PRK14179 220 VKEGAVVIDVGMNR 233 (284)
T ss_pred ccCCcEEEEeccee
Confidence 79999999998554
No 83
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=6.6e-07 Score=84.13 Aligned_cols=118 Identities=22% Similarity=0.306 Sum_probs=77.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhhhccCCCCCc--------cccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQPV--------TWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~l~ell 234 (342)
++|+|||.|.||..+|..++ ..|.+|++||+++....... .. .+.. +...+.... ......+.++ +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDR-LVKKGKMTEADKEAALARITGTTDLDD-L 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 57999999999999999984 66999999999876432100 00 0000 011110000 1112345554 7
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
++||+|+.|+|-..+.+.-+-++..+.++++++++....| +....|.+.+..
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 8999999999977777766666677778999998544444 566688888753
No 84
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=1.8e-06 Score=81.50 Aligned_cols=154 Identities=23% Similarity=0.250 Sum_probs=92.1
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---ccCCCCC--------ccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~l~ell 234 (342)
++|+|||.|.||..+|..++ ..|.+|++||++++.... ........+ ...+... .......+++ .+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLEA-GLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 68999999999999999984 678999999998764321 111000000 0001000 0011234665 47
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK 313 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~ 313 (342)
++||+|+.++|..++.+..+-++....++++++|+ |+|.-. ...+.+.+.. +-...++-.++ |.+-.++
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~--p~~~~~~---- 151 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN--PVPVMKL---- 151 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC--CcccCce----
Confidence 89999999999877766665567777889999998 666544 3467777643 22334455555 3222222
Q ss_pred ceEEcCCCCCCcHHHHHHHHH
Q 019328 314 NAIVVPHIASASKWTREGMAT 334 (342)
Q Consensus 314 nvi~TPHia~~t~~~~~~~~~ 334 (342)
+-+.||.+ .+.+..+....
T Consensus 152 -vei~~g~~-t~~~~~~~~~~ 170 (292)
T PRK07530 152 -VELIRGIA-TDEATFEAAKE 170 (292)
T ss_pred -EEEeCCCC-CCHHHHHHHHH
Confidence 34566643 34555544443
No 85
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.53 E-value=4.5e-07 Score=84.92 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCEEEEEccChHHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..+|||||+|.||+.+++.+.+. .++++. +||+++... +.+.+.++ . ...+.+++++++++|+|++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~g----------~-~~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGLR----------R-PPPVVPLDQLATHADIVVE 73 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhcC----------C-CcccCCHHHHhcCCCEEEE
Confidence 47899999999999999997443 578876 678876542 22222111 0 1234689999999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 291 (342)
|+|.. +..-+ ..+.++.|.-++..++|.+.+.++|.++.+++..
T Consensus 74 ~tp~~--~h~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 74 AAPAS--VLRAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred CCCcH--HHHHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 99943 23222 2334566777777899988889999999888654
No 86
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.53 E-value=1.1e-06 Score=74.64 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=77.3
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++.+++++|+|.|.||+.+++.+ ...| .+|.++|++.... +.+.+.++. .. . .....+++++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~~----~~---~-~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFGE----LG---I-AIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHhh----cc---c-ceeecchhhccccCCEE
Confidence 46789999999999999999998 4564 7899999987543 222222110 00 0 01235677888999999
Q ss_pred EEcCCCCcc-ccc-ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328 241 SLHPVLDKT-TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 241 ~l~lplt~~-t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~ 290 (342)
++++|.... ... .+... .++++.+++|++..+.. + .|.+.+++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 999996653 122 23332 36899999999876543 3 7777777654
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.51 E-value=1.2e-06 Score=84.23 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=76.8
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc-cCC-CCCccccccCCHHHHhhcCCEEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANG-EQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..+|+|||.|.||..+|.+|+ ..|.+|.+|+|+++.. +..... ..... ..+ ..........+++++++.+|+|++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 358999999999999999984 6799999999986532 111110 00000 000 000002234578888999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCC-ccCC--HHHHHHHHHc
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 288 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG-~~vd--~~aL~~aL~~ 288 (342)
++|... + ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 81 ~v~~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 81 AVPSKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred ECchHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 999552 2 5667889999999999998 4333 5566666654
No 88
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.49 E-value=1.1e-06 Score=82.97 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=84.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh---hccCCCCC--------ccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~l~ell 234 (342)
++|||||.|.||..+|..++ ..|.+|+.||++++..... .+.+... ....+... .......++ +.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAG-RNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHH-HHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence 48999999999999999975 6799999999998753221 1000000 11111110 001124577 457
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccC-CCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~m-k~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 301 (342)
+.||+|+-++|.+.+.+.-+-.+.-+.+ +++++|++.+.+-.+ ..+..+++. +=.-.++..|.+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~P 147 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFNP 147 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCCC
Confidence 9999999999999998888776555555 899999887666544 445555443 223445566654
No 89
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.48 E-value=7.2e-07 Score=77.64 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=68.5
Q ss_pred cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.++.||++.|||.|.+ |..+|+.| ...|++|+..+|+. .++.+.+.+||+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3799999999999996 88899997 68899999888752 256778999999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd 278 (342)
|+.+.+.. ++|.++. ++++.++||++.-.-+|
T Consensus 91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence 99998832 3688875 57899999999988877
No 90
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.47 E-value=2.1e-06 Score=85.07 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhhcCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
+|||||+|.||..+|..|+ ..|.+|++||+++.... .+..+.. ..+......+ ......++++++++||
T Consensus 2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v~-~l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKVD-KLNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHHH-HhhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhCC
Confidence 7999999999999999984 67999999999876421 1111000 0000000000 0123457888899999
Q ss_pred EEEEcCCCCccc------cccc--CHhHHccCCCCcEEEecCCCccCCHHHHHH-HHHcC-CccEEEeec---CCCCCCC
Q 019328 239 VISLHPVLDKTT------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVE-HLKQN-PMFRVGLDV---FEDEPYM 305 (342)
Q Consensus 239 iV~l~lplt~~t------~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~-aL~~g-~i~gaalDV---~~~EP~~ 305 (342)
+|++|+|..... ..+. -......+++|.++|+.|.-.+=-.+.+.+ .+++. .+. .+.|. +.+|...
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCC
Confidence 999999954321 1122 134566789999999999766666667764 44441 111 12332 2344432
Q ss_pred C----CCccCCCceEEc
Q 019328 306 K----PGLSEMKNAIVV 318 (342)
Q Consensus 306 ~----~~L~~~~nvi~T 318 (342)
. ..++..+.+++.
T Consensus 158 ~G~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGG 174 (411)
T ss_pred CCChhhhhcCCCEEEEe
Confidence 2 235666677766
No 91
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.46 E-value=5.7e-07 Score=83.57 Aligned_cols=95 Identities=22% Similarity=0.395 Sum_probs=78.2
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
.+.||.+.|.|||..|+..|+.| ++||++|++....|-..+.+-.++ .....++|+.++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG---------------~~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEG---------------YEVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhc---------------cEeeeHHHhhhcCCEEE
Confidence 47899999999999999999998 899999999876664444332222 23578999999999999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~ 276 (342)
.+.- .+++|..+.|.+||.++++.|++.-.+
T Consensus 275 TtTG----c~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TTTG----CKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred EccC----CcchhhHHHHHhCcCCcEEeccccccc
Confidence 7754 678899999999999999999987654
No 92
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.46 E-value=4.7e-06 Score=78.69 Aligned_cols=130 Identities=17% Similarity=0.267 Sum_probs=81.3
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh----hhhhhhccCCCCC--------ccccccCCHH
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT----AYGQFLKANGEQP--------VTWKRASSMD 231 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~~----~~~~~~~~~~~~~--------~~~~~~~~l~ 231 (342)
++|+|||.|.||..+|..+ ...|.+|+.||+++...... ... ....... .+... .......++
T Consensus 4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~-~g~~~~~~~~~~~~~i~~~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVE-KGKMSEDEAKAIMARIRTSTSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHH-cCCCCHHHHHHHHhCcEeeCCH-
Confidence 6899999999999999997 46799999999987643211 000 0000000 01000 000112345
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (342)
Q Consensus 232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 301 (342)
+.+++||+|+.++|...+.+.-+-++.-+.++++++|++.+.| +....+.+.+.. +-.-.++..|.+
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P 147 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNP 147 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCC
Confidence 5679999999999976655555555555678999999877776 456777777753 223344444443
No 93
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.45 E-value=8.3e-07 Score=90.17 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=87.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC--------ccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (342)
++|||||.|.||+.+|..++ ..|.+|+.||+++...... .. ..+.... ..+... .......++++ +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLV-EKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 68999999999999999975 6699999999998653221 00 0010001 111000 00122457766 5
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
+.||+|+-++|.+.+.+..+-.+.-+.++++++| +|+|.-++ ..+.+++.. .=.-.++..|.+-|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence 6999999999999999988776666667899999 59988776 367776653 22345667776544
No 94
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.44 E-value=7.4e-07 Score=83.52 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=73.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++|||||+|+||+++++.|. .-| .+|++|||+.... +...+.+ +.....+..+++.+||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~~------------g~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDKY------------GITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHhc------------CcEEeCCcHHHHhhCCEEE
Confidence 58999999999999999874 434 3799999987542 2221111 1122357788899999999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 287 (342)
+|+| ......++ ++....++++.++|++.-|- +.+.|.+.+.
T Consensus 69 Lavk-P~~~~~vl-~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~ 110 (272)
T PRK12491 69 LSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD 110 (272)
T ss_pred EEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence 9999 35555555 34445568899999998874 5566666664
No 95
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.44 E-value=1.5e-06 Score=88.12 Aligned_cols=132 Identities=19% Similarity=0.279 Sum_probs=88.6
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhccCCCCC--------ccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (342)
++|||||.|.||+.+|..++ ..|.+|..||+++....... ...+.... ..+... .......++++ +
T Consensus 6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNSLV-TKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 57999999999999999985 67999999999976532110 00011011 111100 00122457766 4
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 304 (342)
+.||+|+-++|...+.+..+..+.-+.++++++|. |||.-++ ..+.+++.. .....++..|.+-|.
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 69999999999988888887776667788898876 7766554 567777753 445677777776553
No 96
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.42 E-value=1e-06 Score=73.88 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=72.0
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
+++|+++.|||.|.+|+.++..| ...|++ |+.++|+.++. +++...+ +..........++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 79999999999999999999998 578986 99999987642 3332222 11112223356777889999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCc-EEEecCCCc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGP 275 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~ga-ilIN~sRG~ 275 (342)
+.+.|.... .+.++.++..++.. ++++.+.-.
T Consensus 80 I~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 80 INATPSGMP---IITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp EE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred EEecCCCCc---ccCHHHHHHHHhhhhceeccccCC
Confidence 999885433 77888887776543 777776543
No 97
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.42 E-value=1e-06 Score=83.20 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=105.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. | -+|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--K-------DVDGl~~ 124 (296)
T PRK14188 55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--K-------DVDGLHV 124 (296)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCCh
Confidence 34556788876554432 4577777766531 3679998754 344443 33333221 2 1222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc-cChHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG-~G~IG~~vA 181 (342)
.. .|-...+.++ ....++.-++.++= + .+.++.||+|+||| .|.+|+.+|
T Consensus 125 ~n---~g~l~~~~~~-~~PcTp~ai~~ll~----~---------------------~~i~~~Gk~V~viGrs~~mG~PmA 175 (296)
T PRK14188 125 VN---AGRLATGETA-LVPCTPLGCMMLLR----R---------------------VHGDLSGLNAVVIGRSNLVGKPMA 175 (296)
T ss_pred hh---HHHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEEcCCcchHHHHH
Confidence 10 0111112222 34555655554331 0 12479999999999 999999999
Q ss_pred HHHHhcCCcEEEEEc-CChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328 182 RMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~ 260 (342)
++| ..-|+.|.+|+ ++ .++++++++||+|+++++... ++.+..
T Consensus 176 ~~L-~~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~-- 219 (296)
T PRK14188 176 QLL-LAANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW-- 219 (296)
T ss_pred HHH-HhCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe--
Confidence 998 46799999995 32 257888999999999999544 444443
Q ss_pred cCCCCcEEEecCCCc
Q 019328 261 TMKKEAILVNCSRGP 275 (342)
Q Consensus 261 ~mk~gailIN~sRG~ 275 (342)
+|+|+++||+|--.
T Consensus 220 -lk~GavVIDvGin~ 233 (296)
T PRK14188 220 -IKPGATVIDVGINR 233 (296)
T ss_pred -ecCCCEEEEcCCcc
Confidence 89999999998654
No 98
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.41 E-value=2.3e-06 Score=81.53 Aligned_cols=124 Identities=13% Similarity=0.177 Sum_probs=74.6
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhccCCCC-C--ccccccCCHHHHhhcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ-P--VTWKRASSMDEVLREAD 238 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~-~--~~~~~~~~l~ell~~sD 238 (342)
++|||||.|.||..+|..+ ...|.+|++||++.+... ..... .+. ....... . .......++++++++||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGALE-RARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 5899999999999999998 467899999999875421 11110 010 0000000 0 00112357888899999
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc-CCccEE
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ-NPMFRV 294 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~ga 294 (342)
+|++++|...+.+.-+-.+.-..++++++++..+-| +....+.+.+.. .++.|+
T Consensus 82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGT 136 (311)
T ss_pred EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEE
Confidence 999999966543433333333456777777544334 345677777653 334443
No 99
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.41 E-value=9.2e-07 Score=82.87 Aligned_cols=100 Identities=18% Similarity=0.318 Sum_probs=66.0
Q ss_pred EEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+|||||+|.||+.+|+.|+ ..| .+|++||+++....... . .+.. ....+++++.. ||+|++|+
T Consensus 2 ~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~~~--~-------~g~~----~~~~~~~~~~~-aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKKAL--E-------LGLV----DEIVSFEELKK-CDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHHHH--H-------CCCC----cccCCHHHHhc-CCEEEEeC
Confidence 7999999999999999974 445 58999999875422110 0 1110 11246677654 99999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
|.. .+...+ .+... +++++++++++.- -..+.+++..
T Consensus 67 p~~-~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 67 PVD-AIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred cHH-HHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 943 334433 34555 8999999997552 3445555544
No 100
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.41 E-value=1.6e-06 Score=91.96 Aligned_cols=144 Identities=16% Similarity=0.135 Sum_probs=91.3
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
++|||||+|.||+.+|+.+ +..| .+|++||++....... ..+ +.. .....+++++++++|+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a--~~~-------g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA--VSL-------GVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH--HHC-------CCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5666 5899999987542211 111 111 01234688889999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC----------CCCccCCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK 313 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~ 313 (342)
+|.. .+..++ ++....++++.++++++.-...-.+.+.+.+... ...+..+=|.. ++.|+.-.
T Consensus 71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~-----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~ 143 (735)
T PRK14806 71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL-----PAGFVPGHPIAGSEKSGVHAANADLFRNH 143 (735)
T ss_pred CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc-----CCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence 9943 333333 3344557889999999875533344455444331 12333344421 13578888
Q ss_pred ceEEcCCCCCCcHHHHH
Q 019328 314 NAIVVPHIASASKWTRE 330 (342)
Q Consensus 314 nvi~TPHia~~t~~~~~ 330 (342)
++++||+... +.+..+
T Consensus 144 ~~~~~~~~~~-~~~~~~ 159 (735)
T PRK14806 144 KVILTPLAET-DPAALA 159 (735)
T ss_pred eEEEECCCCC-CHHHHH
Confidence 8999997544 444433
No 101
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.39 E-value=2.2e-06 Score=80.49 Aligned_cols=107 Identities=18% Similarity=0.292 Sum_probs=71.6
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
.+|||||+|.||+.+++.+. ..| .+|++|+++...........+ . ......+..++++++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~----------~-~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY----------P-TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc----------C-CeEEeCCHHHHHhhCCEEE
Confidence 47999999999999999974 445 689999986543222211111 0 0111357788899999999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
+|+| ......++ .+....++++..+|.+.-| +..+.|.+.+..
T Consensus 70 lavp-p~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 70 ICVP-PLAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred EecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 9999 22233322 3333456788899998887 666788887643
No 102
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.37 E-value=1.5e-06 Score=82.82 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=70.3
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc--CCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
++|+|||.|.||..+|..|+ ..|.+|.+|++++... +..... +..... ......+.....+++++++.||+|++|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 47999999999999999984 6789999999986542 211110 000000 000000122345788899999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
+|. ..+..++ .+....+++++++|+++.|--.
T Consensus 79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 995 4555554 3455567899999999866443
No 103
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.36 E-value=2.8e-06 Score=83.51 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=87.8
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC------CCccccccCCHHHHhhcCCEE
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE------QPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ell~~sDiV 240 (342)
+|||||+|.||..+|..++ .|.+|++||++..+. +...++.....+ .+. .........+..++++.||+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e-~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVD-KEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCC-cCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 6999999999999997763 489999999987652 221111000000 000 011112223467788999999
Q ss_pred EEcCCCCcccc-cccCH-------hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----CC
Q 019328 241 SLHPVLDKTTY-HLINK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PG 308 (342)
Q Consensus 241 ~l~lplt~~t~-~li~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----~~ 308 (342)
++|+|...+-+ ..++- +.+..+++|.++|+.|+-.+=-.+.+.+.+.+..+ +|.+|...+ ..
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d 151 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYD 151 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccccc
Confidence 99999552211 11221 22334799999999999998888888888765322 246666533 24
Q ss_pred ccCCCceEE
Q 019328 309 LSEMKNAIV 317 (342)
Q Consensus 309 L~~~~nvi~ 317 (342)
++..|.|++
T Consensus 152 ~~~p~rvv~ 160 (388)
T PRK15057 152 NLHPSRIVI 160 (388)
T ss_pred ccCCCEEEE
Confidence 666666654
No 104
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.35 E-value=4.7e-06 Score=84.54 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=76.8
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-------hhhhhccCCCCCcc-ccccCCHHHHhhcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQPVT-WKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~l~ell~~s 237 (342)
++|||||.|.||..+|..++ .-|.+|.+||+++..... ..+. +. .+........+ .....++++++++|
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERI-IGEVLANAERAYA-MLTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHh-hhccchhhhhhceEeeCCHHHHhcCC
Confidence 58999999999999999985 669999999998765321 1000 00 00000000011 22356888999999
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
|+|+.++|...+.+..+-.+.-+.++++++| .++..++ ....+.+.+..
T Consensus 82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999999987766765545555667888755 4444443 35577777654
No 105
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.34 E-value=1e-05 Score=77.11 Aligned_cols=154 Identities=21% Similarity=0.158 Sum_probs=86.5
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhhhccCCCCC--------ccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (342)
++|||||.|.||..+|..++ ..|.+|++||+++....... .. .+.. +...+... .......++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLED-LAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 47999999999999999984 67999999999875321110 00 0000 00111100 0012346888999
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCc
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n 314 (342)
+.||+|+.++|...+.+..+-.+.-+..+++.++. .+.. ......+.+.+.... ....|-+-+ |. .-.|=
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~--~~~~~hp~~-p~-----~~~~l 150 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAGRE--RCLVAHPIN-PP-----YLIPV 150 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCCcc--cEEEEecCC-Cc-----ccCce
Confidence 99999999999765555444333333345555554 3333 344667888775432 223333332 21 11123
Q ss_pred eEEcCCCCCCcHHHHHHH
Q 019328 315 AIVVPHIASASKWTREGM 332 (342)
Q Consensus 315 vi~TPHia~~t~~~~~~~ 332 (342)
+.++||-++ +.+..+..
T Consensus 151 veiv~~~~t-~~~~~~~~ 167 (308)
T PRK06129 151 VEVVPAPWT-APATLARA 167 (308)
T ss_pred EEEeCCCCC-CHHHHHHH
Confidence 668887543 44454443
No 106
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.34 E-value=1.5e-05 Score=74.85 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=107.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+.. ..|++++..+ ..+++.. ++..+-. |= +|.+.-
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~ 123 (285)
T PRK14191 54 KACERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--KD-------VDGFHP 123 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccCh
Confidence 34556788887655543 3467777665532 3689998754 3444433 3333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++= + .+.++.||++.|||-| .+|+.+|
T Consensus 124 ~---n~g~l~~g~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla 174 (285)
T PRK14191 124 L---NIGKLCSQLDG-FVPATPMGVMRLLK----H---------------------YHIEIKGKDVVIIGASNIVGKPLA 174 (285)
T ss_pred h---hHHHHhcCCCC-CCCCcHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence 1 11111222232 34566666654441 1 2358999999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+..+. .++.+.+++||+|+.+++ ..+++..+.+
T Consensus 175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG----~p~~i~~~~v-- 219 (285)
T PRK14191 175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVG----KPDLIKASMV-- 219 (285)
T ss_pred HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence 998 57899998874321 257788999999999997 3457777766
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 220 -k~GavVIDvGi~~ 232 (285)
T PRK14191 220 -KKGAVVVDIGINR 232 (285)
T ss_pred -CCCcEEEEeeccc
Confidence 8999999998654
No 107
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.33 E-value=4.7e-07 Score=81.78 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHH-hcCCcEEEE-EcCChh
Q 019328 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA 200 (342)
Q Consensus 123 vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~~-~d~~~~ 200 (342)
.++|.+..++...|++. +|. ..++++|+|+|.+|+.+++.+. ...|+++.+ +|+++.
T Consensus 63 ~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~ 121 (213)
T PRK05472 63 GVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE 121 (213)
T ss_pred CCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence 35688999998888885 121 2358999999999999998531 357888775 676543
Q ss_pred hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEEEcCCCCcc---cccccCHhHHccCCCCcEEEecCCCc
Q 019328 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~l~lplt~~---t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
... . ...........++++++++ .|.+++++|.+.. ...+.......-|...++.+|+.+|.
T Consensus 122 ~~~-~------------~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~ 188 (213)
T PRK05472 122 KIG-T------------KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDV 188 (213)
T ss_pred hcC-C------------EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCC
Confidence 210 0 0001111223567888765 9999999997664 22233334455577789999999999
Q ss_pred cCCHHHHHHHHHc
Q 019328 276 VIDEVALVEHLKQ 288 (342)
Q Consensus 276 ~vd~~aL~~aL~~ 288 (342)
+|+..+|..+|..
T Consensus 189 ~v~~~~l~~~l~~ 201 (213)
T PRK05472 189 IVRNVDLTVELQT 201 (213)
T ss_pred EEEEechHHHHHH
Confidence 9999999999874
No 108
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.31 E-value=3e-06 Score=72.83 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=64.8
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
+|+|+|.|+.|..+|..| ..-|.+|..|+|+.+.. +...+.-. .........+.......+++++++.||+|++++|
T Consensus 1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 689999999999999997 47789999999987432 22111100 0000000011112235789999999999999999
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
. ....-+-++....++++..+|++..|=
T Consensus 79 s--~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 79 S--QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G--GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred H--HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 3 223334455666678899999998764
No 109
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=2.9e-05 Score=72.65 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=108.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. ..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KD-------VDGl~~ 118 (279)
T PRK14178 49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KD-------VDGFHP 118 (279)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 34556788877655443 3577777766531 4689998754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++= ..+.++.||++.|+|.+ ..|+.+|
T Consensus 119 ~---n~g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~V~ViGrs~~vGrpla 169 (279)
T PRK14178 119 L---NLGRLVSGLPG-FAPCTPNGIMTLLH-------------------------EYKISIAGKRAVVVGRSIDVGRPMA 169 (279)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCccccHHHH
Confidence 1 01111122333 34555655554431 11358999999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ...|+.|..+..+. .++.+.+++||+|+.+++.. +++.++.+
T Consensus 170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk~----~lv~~~~v-- 214 (279)
T PRK14178 170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGKA----GFITPDMV-- 214 (279)
T ss_pred HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCcc----cccCHHHc--
Confidence 997 68999998776431 36888899999999999722 67888885
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|||+++||+|-..
T Consensus 215 -k~GavVIDVgi~~ 227 (279)
T PRK14178 215 -KPGATVIDVGINQ 227 (279)
T ss_pred -CCCcEEEEeeccc
Confidence 9999999998544
No 110
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.26 E-value=6.4e-05 Score=70.55 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.++.||++.|||.|. +|+.+|..| ...|+.|..++.+ ..++.+.+++||+
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADI 205 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRF----------------------------TKNLRHHVRNADL 205 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECC----------------------------CCCHHHHHhhCCE
Confidence 489999999999999 999999998 5789999987642 1368899999999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
|+.+++- .+++..+ .+|+|+++||+|--
T Consensus 206 vi~avG~----p~~v~~~---~vk~gavVIDvGin 233 (285)
T PRK10792 206 LVVAVGK----PGFIPGE---WIKPGAIVIDVGIN 233 (285)
T ss_pred EEEcCCC----cccccHH---HcCCCcEEEEcccc
Confidence 9999962 2356664 45899999999843
No 111
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.24 E-value=9.8e-06 Score=71.33 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=89.2
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh-hhhhhccCCCC-------CccccccCCHHHHhhc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE 236 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~ell~~ 236 (342)
+|||||.|.||+.+|..++ ..|++|..||+++..... ..... +....+..... ........+++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6999999999999999975 679999999999764221 11111 11111111110 00112357889888 9
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceE
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi 316 (342)
||+|+=++|-+-+.+.-+-++.-+.++++++|...+.+ +.-..|...+.. +-+-.++=.|. |+...||.+ |+
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---vv 150 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFFN--PPHLMPLVE---VV 150 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---EE
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEeccc--ccccCceEE---Ee
Confidence 99999999988888888888888889999998765443 455667777653 33455555553 332234444 67
Q ss_pred EcCCCCCCcHHHH
Q 019328 317 VVPHIASASKWTR 329 (342)
Q Consensus 317 ~TPHia~~t~~~~ 329 (342)
-.|+.+-.+.+..
T Consensus 151 ~~~~T~~~~~~~~ 163 (180)
T PF02737_consen 151 PGPKTSPETVDRV 163 (180)
T ss_dssp E-TTS-HHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 7777654444433
No 112
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=5.6e-05 Score=70.96 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=105.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|++.+....++ ..+++++.+.+.. +.|++++..+ ..+++. ++++.+-. |= +|.+--
T Consensus 61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 130 (287)
T PRK14176 61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KD-------ADGFHP 130 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence 34556788887655543 3567777765531 4689998754 334443 33333221 21 222110
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
...|-...+.+. ....++.-++.++= ..+.++.||++.|||.|. +|+.+|
T Consensus 131 ---~N~g~l~~g~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVGkPla 181 (287)
T PRK14176 131 ---YNMGKLMIGDEG-LVPCTPHGVIRALE-------------------------EYGVDIEGKNAVIVGHSNVVGKPMA 181 (287)
T ss_pred ---hhhhhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence 011111122232 34556665554431 123589999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ...|+.|..++.. ..++.+..++||+|+.++.- .++|..+ .
T Consensus 182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~ 225 (287)
T PRK14176 182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M 225 (287)
T ss_pred HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence 998 6789999887642 13688889999999998763 2467666 5
Q ss_pred CCCCcEEEecCCC
Q 019328 262 MKKEAILVNCSRG 274 (342)
Q Consensus 262 mk~gailIN~sRG 274 (342)
+|+|+++||+|--
T Consensus 226 vk~gavVIDvGin 238 (287)
T PRK14176 226 VKEGAVIFDVGIT 238 (287)
T ss_pred cCCCcEEEEeccc
Confidence 6899999999853
No 113
>PRK07680 late competence protein ComER; Validated
Probab=98.20 E-value=9.6e-06 Score=75.90 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=71.5
Q ss_pred EEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
+|||||+|.||+.+++.|. ..| .+|.+|+|++... ..+.+.+ . +.....+..+++..||+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~---------~--g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY---------P--GIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc---------C--CeEEECCHHHHHHhCCEEEE
Confidence 6999999999999999874 445 3799999987542 2211111 0 11223578888899999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 287 (342)
++| ......++ ++....++++.++|+++-| +..+.|.+.+.
T Consensus 69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 998 33344444 3444567888999999854 36777766654
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.19 E-value=5.2e-06 Score=77.01 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=71.0
Q ss_pred EEEEEccChHHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
+|||||+|+||+.+++.|. ..|. .+.+|+|+..+. +.+.+.++ +.....+.++++++||+|+++
T Consensus 2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~~-----------~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERFP-----------KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHcC-----------CceEeCCHHHHHHhCCEEEEE
Confidence 7999999999999999974 4443 357899876542 22211110 112245788899999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
+| ......++.. + .++++.++|.++ .-+..+.|.+.+..+
T Consensus 69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 99 3444444432 3 357889999977 347788888887653
No 115
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.17 E-value=0.00025 Score=71.85 Aligned_cols=228 Identities=18% Similarity=0.185 Sum_probs=122.5
Q ss_pred HHHHHhCCCeEEEecC--CCCCCCHHHHHHH---hc-----CCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCc
Q 019328 30 INLLIEQDCRVEICTQ--KKTILSVEDIIAL---IG-----DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN 99 (342)
Q Consensus 30 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~---~~-----~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~ 99 (342)
.+.|.+.|+++.+... ....++.++..+. +. +++|+|+-- ..+ +.+-++.+++ |-.+|+...-..|.
T Consensus 23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~~P-~~~e~~~l~~-g~~li~~l~p~~~~ 99 (509)
T PRK09424 23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-NAP-SDDEIALLRE-GATLVSFIWPAQNP 99 (509)
T ss_pred HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-CCC-CHHHHHhcCC-CCEEEEEeCcccCH
Confidence 5677778888866433 2234555555531 10 136766621 222 3444667765 32455554444444
Q ss_pred cChhHHHhCCceEEc---CCC---CC----chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 019328 100 VDVNAANKYGIAVGN---TPG---VL----TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (342)
Q Consensus 100 id~~~a~~~gI~v~n---~p~---~~----~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvG 169 (342)
=-++++.++||.+.. .|- .. =.++|+.+= +|-+..+.+.+ |... ...........|.+|.
T Consensus 100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~~~--~g~~taaG~~pg~kVl 169 (509)
T PRK09424 100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GRFF--TGQITAAGKVPPAKVL 169 (509)
T ss_pred HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cccC--CCceeccCCcCCCEEE
Confidence 446777899988766 221 00 122333221 22222221111 1110 0000001145699999
Q ss_pred EEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh---hccCC--CCCcccccc--CC--------HHHHh
Q 019328 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANG--EQPVTWKRA--SS--------MDEVL 234 (342)
Q Consensus 170 IiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~--~~--------l~ell 234 (342)
|+|.|.+|...++.+ +.+|++|+++|+++..... .+.+|.. ..... ....++... .+ +.+.+
T Consensus 170 ViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle~--aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 170 VIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAEQ--VESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred EECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 999999999999985 8999999999998865322 2223321 00000 000000000 01 12223
Q ss_pred hcCCEEEEcCCCCcc-cccccCHhHHccCCCCcEEEecCC
Q 019328 235 READVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 235 ~~sDiV~l~lplt~~-t~~li~~~~l~~mk~gailIN~sR 273 (342)
..+|+|+.+...... .-.++.++.++.||||+.++++|=
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 579999998753221 335567899999999999999974
No 116
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=1.4e-05 Score=73.24 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=67.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcC--CcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+++|||||.|.||+.+++.+++.. ..+ ++.++++.....+.+...+ +.....+++++++++|+|
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiV 70 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEE
Confidence 3578999999999999999874321 234 7778875322223222211 112235788999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
++++|. ...+.++ ++.-..++ +.++|.++=| ++.+.|.+.+..+
T Consensus 71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 999993 2223322 22222233 5688988766 4555676666543
No 117
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.16 E-value=2.2e-05 Score=74.38 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~ 256 (342)
|+.+|++| ..-|..|++||+++....+...+. +.. .+.....+..+++++||+|++|+|..++++.++ .
T Consensus 32 GspMArnL-lkAGheV~V~Drnrsa~e~e~~e~----Lae-----aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~ 100 (341)
T TIGR01724 32 GSRMAIEF-AMAGHDVVLAEPNREFMSDDLWKK----VED-----AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R 100 (341)
T ss_pred HHHHHHHH-HHCCCEEEEEeCChhhhhhhhhHH----HHH-----CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence 78999998 467999999998765321110000 111 122345689999999999999999888888887 5
Q ss_pred hHHccCCCCcEEEecCCCccCCHHHHHHHHHcC-CccEEEeecCCCCCCCCCCccCCCceEEc----CCCCCCcHHHHHH
Q 019328 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIVV----PHIASASKWTREG 331 (342)
Q Consensus 257 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g-~i~gaalDV~~~EP~~~~~L~~~~nvi~T----PHia~~t~~~~~~ 331 (342)
..++.+++|+++||+|+. +.+.+++.|+.. ++..--+-|..--|..=|.--++..-++. --.+.+|.|..++
T Consensus 101 GLaa~L~~GaIVID~STI---sP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~ 177 (341)
T TIGR01724 101 TIIEHVPENAVICNTCTV---SPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISK 177 (341)
T ss_pred HHHhcCCCCCEEEECCCC---CHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHH
Confidence 688999999999999764 467777777651 01123344455555311111112112222 2234567777776
Q ss_pred HHHHH
Q 019328 332 MATLA 336 (342)
Q Consensus 332 ~~~~~ 336 (342)
+.+.+
T Consensus 178 ~~el~ 182 (341)
T TIGR01724 178 CVELA 182 (341)
T ss_pred HHHHH
Confidence 66554
No 118
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=0.00013 Score=68.40 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=106.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. ..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p 123 (284)
T PRK14170 54 KRTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KD-------VDGFHP 123 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 34556788877655443 3467777765531 4689998754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
.. .|-...+.++ ....++.-++.++- ..+.++.||++.|||-+. +|+.+|
T Consensus 124 ~N---~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrS~iVGkPla 174 (284)
T PRK14170 124 VN---VGNLFIGKDS-FVPCTPAGIIELIK-------------------------STGTQIEGKRAVVIGRSNIVGKPVA 174 (284)
T ss_pred hh---hhHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 10 0111112222 35556666555441 124589999999999965 699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+... ..++.+.+++||+|+.++.- .+++..+.+
T Consensus 175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~v-- 219 (284)
T PRK14170 175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDYI-- 219 (284)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 5678999876532 13688999999999999883 456777765
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 220 -k~GavVIDvGin~ 232 (284)
T PRK14170 220 -KPGAIVIDVGMDR 232 (284)
T ss_pred -CCCCEEEEccCcc
Confidence 7999999998655
No 119
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=9.1e-05 Score=69.60 Aligned_cols=171 Identities=20% Similarity=0.206 Sum_probs=107.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+. +..|++++..+ ..++... ++..+-. |= +|.+.-
T Consensus 52 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 121 (287)
T PRK14173 52 RQAKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KD-------VDGFHP 121 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence 34556788887655543 356777766553 13689998754 3444433 3333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.+. ....++.-++.++- ..+.++.||++.|||-+ .+|+.+|
T Consensus 122 ~---N~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 172 (287)
T PRK14173 122 L---NVGRLWMGGEA-LEPCTPAGVVRLLK-------------------------HYGIPLAGKEVVVVGRSNIVGKPLA 172 (287)
T ss_pred h---hhHHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence 0 01111112222 34556665554441 12358999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+..+ ..++.+..++||+|+.++.- .+++..+.+
T Consensus 173 ~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~v-- 217 (287)
T PRK14173 173 ALL-LREDATVTLAHSK----------------------------TQDLPAVTRRADVLVVAVGR----PHLITPEMV-- 217 (287)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 5778999876532 13688999999999999972 367877776
Q ss_pred CCCCcEEEecCCCcc
Q 019328 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~gailIN~sRG~~ 276 (342)
|+|+++||+|.-.+
T Consensus 218 -k~GavVIDVGin~~ 231 (287)
T PRK14173 218 -RPGAVVVDVGINRV 231 (287)
T ss_pred -CCCCEEEEccCccc
Confidence 79999999997654
No 120
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=0.00017 Score=67.47 Aligned_cols=170 Identities=17% Similarity=0.230 Sum_probs=105.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++.+..++ ..+++|+.+.+. ++.|++++..+ ..+++. +++..+-. |= +|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~ 124 (278)
T PRK14172 55 KVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--KD-------IDCLTF 124 (278)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cCccCH
Confidence 34556788887655433 356777776553 13689998754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-+ .+|+.+|
T Consensus 125 ~---n~g~l~~g~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~~VGkPla 175 (278)
T PRK14172 125 I---SVGKFYKGEKC-FLPCTPNSVITLI----KS---------------------LNIDIEGKEVVVIGRSNIVGKPVA 175 (278)
T ss_pred h---hHHHHhCCCCC-CcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 0 11111111222 3445555555433 11 1348999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..++.+ ..++.+..++||+|+.++.- .++|..+.+
T Consensus 176 ~lL-~~~~AtVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i-- 220 (278)
T PRK14172 176 QLL-LNENATVTICHSK----------------------------TKNLKEVCKKADILVVAIGR----PKFIDEEYV-- 220 (278)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence 998 5778999887542 13688999999999999983 456777774
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 221 -k~gavVIDvGin~ 233 (278)
T PRK14172 221 -KEGAIVIDVGTSS 233 (278)
T ss_pred -CCCcEEEEeeccc
Confidence 7999999997544
No 121
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=0.00022 Score=66.95 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=108.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (284)
T PRK14190 55 KAAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KD-------VDGFHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccCH
Confidence 34556788887655443 3567777665531 3678988754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc-ChHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~-G~IG~~vA 181 (342)
.. .|-...+.++ ....++.-++.++= ..+.++.||++.|||- ..+|+.+|
T Consensus 125 ~n---~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~Gk~vvViGrS~iVG~Pla 175 (284)
T PRK14190 125 IN---VGRMMLGQDT-FLPCTPHGILELLK-------------------------EYNIDISGKHVVVVGRSNIVGKPVG 175 (284)
T ss_pred hh---HHHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence 11 1111122233 34566666554441 1235899999999999 56799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..++.+ ..++.+.+++||+|+.++. ..++|..+.+
T Consensus 176 ~lL-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~i-- 220 (284)
T PRK14190 176 QLL-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAVG----KPKLITADMV-- 220 (284)
T ss_pred HHH-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence 998 5778999887532 1368889999999999986 3457888887
Q ss_pred CCCCcEEEecCCCcc
Q 019328 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~gailIN~sRG~~ 276 (342)
|+|+++||+|.-.+
T Consensus 221 -k~gavVIDvGi~~~ 234 (284)
T PRK14190 221 -KEGAVVIDVGVNRL 234 (284)
T ss_pred -CCCCEEEEeecccc
Confidence 89999999987653
No 122
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.09 E-value=1.2e-05 Score=69.77 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=70.5
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccC--CC-CC----------cccccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN--GE-QP----------VTWKRA 227 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~~-~~----------~~~~~~ 227 (342)
..+...+|.|+|.|+.|+..++.+ +++|++|..+|.++.... ............. .. .. ......
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLR-QLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHH-HHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHH-hhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 357789999999999999999996 899999999998875321 1111111111110 00 00 001123
Q ss_pred CCHHHHhhcCCEEEEc-CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 228 ~~l~ell~~sDiV~l~-lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
..|.+.++.+|+|+.+ +--.+..-.++.++.++.||||++++++|
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 4578899999998864 43356677899999999999999999996
No 123
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.08 E-value=1.3e-05 Score=80.38 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEcCCCCccccc
Q 019328 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 252 (342)
Q Consensus 176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~lplt~~t~~ 252 (342)
||+.+|++|+ .-|.+|.+|||++.+.. .+.+.. +. ..+.....+++++++. +|+|++++|..+.+..
T Consensus 1 MG~~mA~nL~-~~G~~V~v~nrt~~~~~-~l~~~~-------g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIA-SHGYTVAVYNRTPEKTD-EFLAEE-------GK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHH-hCCCeEEEECCCHHHHH-HHHHhh-------CC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 7999999984 67999999999976532 222110 10 0123345789998875 8999999999999999
Q ss_pred ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
++ ...+..|.+|.++|+++....-|...+.+.+++..+.....=|.-.++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 88 568899999999999999999999999999998877665555555544
No 124
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.08 E-value=5.6e-06 Score=68.69 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=53.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
.-.+|||||.|+.|..+++.| +.-|..|.++ +|+....... . .. .......++++++..+|++++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a-~----------~~--~~~~~~~~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA-A----------AF--IGAGAILDLEEILRDADLVFI 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH-H----------C----TT-----TTGGGCC-SEEEE
T ss_pred CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc-c----------cc--cccccccccccccccCCEEEE
Confidence 346899999999999999998 6778988765 6665332111 0 00 111234578899999999999
Q ss_pred cCCCCcccccccCHhHHcc--CCCCcEEEecC
Q 019328 243 HPVLDKTTYHLINKERLAT--MKKEAILVNCS 272 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~--mk~gailIN~s 272 (342)
++|.+. ... +-++.-.. .++|.+++-||
T Consensus 75 avpDda-I~~-va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 75 AVPDDA-IAE-VAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp -S-CCH-HHH-HHHHHHCC--S-TT-EEEES-
T ss_pred EechHH-HHH-HHHHHHHhccCCCCcEEEECC
Confidence 999553 222 23333333 68999999885
No 125
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=2.7e-05 Score=70.51 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=89.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH---hhcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~sDiV~l 242 (342)
+++|.||+|+||..+++|| ..-|.+|++||+++....+. ...+ .....+++++ |...-+|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~g-----a~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEG-----ATGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence 4799999999999999998 67899999999998754322 1112 2234567665 456789999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 299 (342)
.+|-..-|...| .++-..|.+|-++|+-+...--|....++.|++..|. -+||=
T Consensus 66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 999876666654 4566778999999999999989999999999988764 34653
No 126
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.06 E-value=4.5e-05 Score=69.58 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=92.3
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc---EEEEEcCCh----hhH--HHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (342)
.++.++++.|+|.|.+|+.+|+.| ...|+ +|+.+||+. ... ...+...+. +...... . ..++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~--~~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T--GGTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c--cCCHH
Confidence 468899999999999999999997 57787 499999982 211 111111111 1100001 1 13687
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC-ccEEEeecCCCCCCCCCCcc
Q 019328 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS 310 (342)
Q Consensus 232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~ 310 (342)
+.++++|+|+.+.| .++++++.++.|+++.++...+. ...|.-+.+|.+.|. +..-|. + ....
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~-----~----~~~~ 156 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGR-----S----DFPN 156 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCC-----C----CCcc
Confidence 88899999999987 57788999999999999998883 334555555555443 333331 1 1235
Q ss_pred CCCceEEcCCCCC
Q 019328 311 EMKNAIVVPHIAS 323 (342)
Q Consensus 311 ~~~nvi~TPHia~ 323 (342)
+..|+++-|-++-
T Consensus 157 Q~nn~~~fPg~~~ 169 (226)
T cd05311 157 QVNNVLGFPGIFR 169 (226)
T ss_pred ccceeeecchhhH
Confidence 7789999998763
No 127
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.05 E-value=8.3e-05 Score=69.15 Aligned_cols=102 Identities=23% Similarity=0.312 Sum_probs=66.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
++|||||+|.||+.+++.+ ...| .+|.+|+|+++.. +.+.+.++ .....+.++++.+||+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~g------------~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEYG------------VRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhcC------------CeecCChHHHHhcCCEEEE
Confidence 5799999999999999987 4556 6899999987542 22211111 1123577888899999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 287 (342)
|+|. ...+.++ ++....+ +..+|.+.-|- ..+.+.+.+.
T Consensus 69 ~v~~-~~~~~v~-~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKP-QVMEEVL-SELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCH-HHHHHHH-HHHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 9982 2233332 2222223 45777776653 5566666654
No 128
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00021 Score=66.95 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=104.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+. +..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~ 123 (281)
T PRK14183 54 KACDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KD-------VDGFHP 123 (281)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hc-------ccccCh
Confidence 34456788876654433 346777766553 13689998754 345543 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-+ .+|+.+|
T Consensus 124 ~---n~g~l~~g~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~~VG~Pla 174 (281)
T PRK14183 124 Y---NVGRLVTGLDG-FVPCTPLGVMELL----EE---------------------YEIDVKGKDVCVVGASNIVGKPMA 174 (281)
T ss_pred h---hhhHHhcCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCcchHHHH
Confidence 0 01111112232 3445565555433 11 2358999999999999 8899999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+... ..++.+..++||+|+.++. ..+++..+.+
T Consensus 175 ~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~v-- 219 (281)
T PRK14183 175 ALL-LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGVG----KPNLITEDMV-- 219 (281)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEecC----cccccCHHHc--
Confidence 998 5678999876431 1368889999999999987 2456777665
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 220 -k~gavvIDvGin~ 232 (281)
T PRK14183 220 -KEGAIVIDIGINR 232 (281)
T ss_pred -CCCcEEEEeeccc
Confidence 7999999998443
No 129
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.05 E-value=2.1e-05 Score=75.49 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=65.1
Q ss_pred EEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHh--hhhhhhccCC----CCCccccccCCHHHHhhcCCEE
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVT--AYGQFLKANG----EQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~ell~~sDiV 240 (342)
|||+|||+||+.+++.+.+.-++++.+. |..++. ...... +|..+..... ....+.....++++++.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~-~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDF-EAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHH-HHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 6999999999999998644457888765 433321 111111 1211100000 0000112245799999999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.|.| .+.|..+++.+.+|+++++|+-.-
T Consensus 80 ve~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 80 VDATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred EECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 98854 778899999999999999998653
No 130
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.05 E-value=1.1e-05 Score=80.23 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=69.6
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|++++|+|.|.||+.+++.| ...| .+|++++|+.... ..+...++ . ......++.+.+..+|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~g-------~---~~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKELG-------G---EAVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHcC-------C---eEeeHHHHHHHHhhCCEE
Confidence 47899999999999999999997 5788 6899999987542 22222111 0 011224677888999999
Q ss_pred EEcCCCCcccccccCHhHHccCC----CCcEEEecCCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRG 274 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk----~gailIN~sRG 274 (342)
+.|++ .+..+++++.++.+. .+.++|+.+.-
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 99965 455678888777652 23588888753
No 131
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=0.0004 Score=65.26 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=104.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|++++....++ ..+++++.+.+. +..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KD-------VDGl~~ 124 (288)
T PRK14171 55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KD-------IDGFHP 124 (288)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cccCCc
Confidence 34556788887655433 356777776653 24689998754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
. ..|-...+........++.-++.++ ++ .+.++.||++.|||-+. +|+++|
T Consensus 125 ~---N~g~l~~g~~~~~~PcTp~av~~lL----~~---------------------y~i~l~GK~vvViGrS~iVGkPla 176 (288)
T PRK14171 125 L---NVGYLHSGISQGFIPCTALGCLAVI----KK---------------------YEPNLTGKNVVIIGRSNIVGKPLS 176 (288)
T ss_pred c---chhhhhcCCCCCCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 0 1111112221123455555544333 11 13479999999999965 699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+..+ ..++.+..++||+|+.++.- .++|..+.+
T Consensus 177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~v-- 221 (288)
T PRK14171 177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEYF-- 221 (288)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHHc--
Confidence 998 5678999876532 14688999999999999982 367877775
Q ss_pred CCCCcEEEecCCC
Q 019328 262 MKKEAILVNCSRG 274 (342)
Q Consensus 262 mk~gailIN~sRG 274 (342)
|+|+++||+|--
T Consensus 222 -k~GavVIDvGin 233 (288)
T PRK14171 222 -NPESIVIDVGIN 233 (288)
T ss_pred -CCCCEEEEeecc
Confidence 799999999843
No 132
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.02 E-value=1.1e-05 Score=75.51 Aligned_cols=107 Identities=20% Similarity=0.337 Sum_probs=77.8
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
.+...+|.|||.|.+|..-||.+ .++|++|...|.+.+. .....+.|+.- .........++++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~r------v~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGGR------VHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCce------eEEEEcCHHHHHHHhhhccEEE
Confidence 46678899999999999999994 7999999999998653 22222222210 0011112356889999999998
Q ss_pred Ec--CCCCcccccccCHhHHccCCCCcEEEecC--CCccC
Q 019328 242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVI 277 (342)
Q Consensus 242 l~--lplt~~t~~li~~~~l~~mk~gailIN~s--RG~~v 277 (342)
-. +| ....-.++.++.+++||||+++|+++ .|+++
T Consensus 237 gaVLIp-gakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~ 275 (371)
T COG0686 237 GAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF 275 (371)
T ss_pred EEEEec-CCCCceehhHHHHHhcCCCcEEEEEEEcCCCce
Confidence 76 45 34567888999999999999999986 35544
No 133
>PLN00203 glutamyl-tRNA reductase
Probab=98.02 E-value=2.3e-05 Score=79.73 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=71.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++.+++|+|||.|.||+.+++.| ...|+ +|++++|+.... ..+...++ + .........++.+.+.+||+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~~------g-~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEFP------D-VEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHhC------C-CceEeecHhhHHHHHhcCCEE
Confidence 48899999999999999999997 57887 799999987542 22222221 0 011112234677889999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCC-------cEEEecCCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRG 274 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~g-------ailIN~sRG 274 (342)
+.+.| ....+|.++.++.++++ -+|||.+--
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 99875 45667888888877432 377877643
No 134
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=0.00022 Score=66.91 Aligned_cols=171 Identities=20% Similarity=0.216 Sum_probs=106.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++++.+.+.. ..|++++..+ ..++.. +++..+-. |=| -|+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDV----DGl~~~n~ 127 (284)
T PRK14193 55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDA----DGLHPTNL 127 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCc----cCCChhhh
Confidence 34556788876654433 3567777765531 3689998754 344443 34433222 211 01111111
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
|-...+.++ ....++.-++.++= ..+.++.||++.|||-+ .+|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrS~~VGkPla 175 (284)
T PRK14193 128 ------GRLVLNEPA-PLPCTPRGIVHLLR-------------------------RYDVELAGAHVVVIGRGVTVGRPIG 175 (284)
T ss_pred ------hHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 111122233 24555665554441 12358999999999985 5799999
Q ss_pred HHHHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHH
Q 019328 182 RMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (342)
Q Consensus 182 ~~l~~a--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l 259 (342)
..|. . -++.|..+... ..++.+.+++||+|+.++.- .++|..+.+
T Consensus 176 ~lL~-~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~i 222 (284)
T PRK14193 176 LLLT-RRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADMV 222 (284)
T ss_pred HHHh-hccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHHc
Confidence 9984 4 68999877532 13688999999999999883 357877775
Q ss_pred ccCCCCcEEEecCCCcc
Q 019328 260 ATMKKEAILVNCSRGPV 276 (342)
Q Consensus 260 ~~mk~gailIN~sRG~~ 276 (342)
|+|+++||+|.-.+
T Consensus 223 ---k~GavVIDvGin~~ 236 (284)
T PRK14193 223 ---KPGAAVLDVGVSRA 236 (284)
T ss_pred ---CCCCEEEEcccccc
Confidence 79999999986653
No 135
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.00 E-value=3e-05 Score=72.43 Aligned_cols=107 Identities=19% Similarity=0.328 Sum_probs=69.8
Q ss_pred CEEEEEccChHHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+|||||+|.||+.+++.+.+. .+++ +.++|+++... +.+.+.+ +...+.++++++.++|+|++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~------------~~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT------------GAKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc------------CCeeECCHHHHhcCCCEEEEc
Confidence 3799999999999999987432 3576 44689886542 2221111 112346899999999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCH---HHHHHHHHcCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~---~aL~~aL~~g~ 290 (342)
.| ++... +-....++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 69 a~--~~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 69 AS--VNAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred CC--hHHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 88 33222 122334456666777888888764 46666666654
No 136
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.99 E-value=2.8e-05 Score=67.03 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=57.2
Q ss_pred ccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 160 g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
+.++.||++.|||-+. +|+.++..| ..-|+.|..++.+ ..++++.+++||
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~----------------------------T~~l~~~~~~AD 81 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSK----------------------------TKNLQEITRRAD 81 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TT----------------------------SSSHHHHHTTSS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCC----------------------------CCcccceeeecc
Confidence 3579999999999985 999999998 6789999887543 147888999999
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~ 276 (342)
+|+.++.- .++|..+. +|+|+++||++.-..
T Consensus 82 IVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 82 IVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV 112 (160)
T ss_dssp EEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred EEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence 99999873 45565554 589999999987664
No 137
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=0.00023 Score=67.28 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=63.4
Q ss_pred cccCCCEEEEEccCh-HHHHHHHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328 161 NLLKGQTVGVIGAGR-IGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (342)
.++.||++.|||-+. +|+++|.+|.+. -++.|.....+ ..++.+.+++
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~----------------------------t~~l~~~~~~ 206 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA----------------------------TKDIPSYTRQ 206 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC----------------------------chhHHHHHHh
Confidence 589999999999964 699999987432 47787765432 1368889999
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
||+|+.+++.. ++|..+.+ |+|+++||+|--.
T Consensus 207 ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 207 ADILIAAIGKA----RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CCEEEEecCcc----CccCHHHc---CCCCEEEEeeccc
Confidence 99999999632 77888888 8999999998544
No 138
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.98 E-value=5.7e-05 Score=70.31 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=76.8
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++|||||+|+||+.++.-+ ..-| -+|++.+|+.+.+. .+.+.|+. . ...+..++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g~----------~--~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYGV----------V--TTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcCC----------c--ccCcHHHHHhhCCEEE
Confidence 5899999999999999987 4555 58999999987653 33333321 1 1467788999999999
Q ss_pred EcCCCCcccccccCHhHHccCC---CCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328 242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk---~gailIN~sRG~~vd~~aL~~aL~~g~i~g 293 (342)
+++. |+. -++.++.++ ++.++|.++-|- ..+.|.+.|.+.++..
T Consensus 68 LavK--Pq~----~~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR 114 (266)
T COG0345 68 LAVK--PQD----LEEVLSKLKPLTKDKLVISIAAGV--SIETLERLLGGLRVVR 114 (266)
T ss_pred EEeC--hHh----HHHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcCCCceEE
Confidence 9998 532 255666666 689999998774 5577777776444433
No 139
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.97 E-value=3.6e-05 Score=68.70 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=64.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++++|+|.|+||..+|+++ ...|.+|.+-+++.++..+...+..+ .. ....+.++..+.+|+|++.+|
T Consensus 2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l~----------~~-i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAALG----------PL-ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhhc----------cc-cccCChHHHHhcCCEEEEecc
Confidence 5899999999999999998 47899998886665443332211110 01 123578899999999999999
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
...- .. +.++....+. |.++|++.-.
T Consensus 70 ~~a~-~~-v~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FEAI-PD-VLAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHH-Hh-HHHHHHHHhC-CeEEEecCCC
Confidence 6442 22 2345555555 8899988653
No 140
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.97 E-value=4.4e-05 Score=67.51 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=79.5
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhhcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
++|+|+|+|.+|..+|..++ ..|.+|++||.+++.. +....+.. +.++... ..-......+.++.+++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 58999999999999999985 7899999999987632 11111100 0000000 000112345778889999
Q ss_pred CEEEEcCCCCcccccccC--------HhHHccCCCCcEEEecCCCccCCHHHHH-HHHHcCCccEEEee-cCCCCCCCC-
Q 019328 238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFEDEPYMK- 306 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~--------~~~l~~mk~gailIN~sRG~~vd~~aL~-~aL~~g~i~gaalD-V~~~EP~~~- 306 (342)
|++++|+|...+..+-.| +...+.++++.++|.-|+-.+=-.+.+. ..|++....+.-++ +|.+|=..+
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 999999994333322222 3455667899999999998887677444 44444322111111 244554432
Q ss_pred ---CCccCCCceEE
Q 019328 307 ---PGLSEMKNAIV 317 (342)
Q Consensus 307 ---~~L~~~~nvi~ 317 (342)
..+.+.|+|++
T Consensus 158 ~a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 158 RAIEDFRNPPRVVG 171 (185)
T ss_dssp SHHHHHHSSSEEEE
T ss_pred CcchhccCCCEEEE
Confidence 25777788874
No 141
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.96 E-value=9.2e-05 Score=62.47 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred ccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 160 g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
+.++.||++.|+|- +..|+.+|.+| ...|+.|..++.+. .++++.+++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 45899999999999 56799999997 57899998876431 36888999999
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
+|+.+++.. ++|+.+. +|||+++|+++...
T Consensus 74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 999998844 5677766 58999999998655
No 142
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00042 Score=65.02 Aligned_cols=170 Identities=18% Similarity=0.266 Sum_probs=106.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccH-HHHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~-~~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|++++....++ ..+++|+.+.+.. ..|++++..+ ..+++ .+++..+-. |=| -|+....+
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDV----DGl~~~N~ 125 (282)
T PRK14169 53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDV----DGFSPVSV 125 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCc----ccCChhhh
Confidence 34556788887655443 3567777765531 3689998754 34443 333333221 211 01111111
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
|-...+.++ ....++.-++.++= ..+.++.||++.|||-+. +|+.+|
T Consensus 126 ------g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 173 (282)
T PRK14169 126 ------GRLWANEPT-VVASTPYGIMALLD-------------------------AYDIDVAGKRVVIVGRSNIVGRPLA 173 (282)
T ss_pred ------HHHhcCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 111122333 35566666655441 113589999999999964 699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+... ..++.+..++||+|+.+++- .+++..+.+
T Consensus 174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~v-- 218 (282)
T PRK14169 174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADAV-- 218 (282)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence 998 5779999877432 13688899999999999983 456777765
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 219 -k~GavVIDvGin~ 231 (282)
T PRK14169 219 -KPGAVVIDVGISR 231 (282)
T ss_pred -CCCcEEEEeeccc
Confidence 7999999998644
No 143
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00045 Score=64.77 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=107.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+.+..++ ..+++++.+.+. +..|++++..+ ..+++. +++..+-. | -+|.+..
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~ 122 (282)
T PRK14182 53 KDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHP 122 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence 34556788887655543 346777776653 14689998754 344443 33333221 2 1222221
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.++.....++.-++.++ ++ .+.++.||++.|||-+ .+|+++|
T Consensus 123 ~---n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla 174 (282)
T PRK14182 123 F---NVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARVDPKGKRALVVGRSNIVGKPMA 174 (282)
T ss_pred h---HHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 1 1121222333323445565555443 11 1347999999999995 5699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ..-++.|..+..+ ..++.+..++||+|+.++.- .++|..+.+
T Consensus 175 ~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~i-- 219 (282)
T PRK14182 175 MML-LERHATVTIAHSR----------------------------TADLAGEVGRADILVAAIGK----AELVKGAWV-- 219 (282)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 5678999887542 13688899999999999982 567877775
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 220 -k~gaiVIDvGin~ 232 (282)
T PRK14182 220 -KEGAVVIDVGMNR 232 (282)
T ss_pred -CCCCEEEEeecee
Confidence 7999999998554
No 144
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.95 E-value=6.9e-05 Score=57.67 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=53.1
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+ |+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence 368899999999999999999997 455 567766531 99
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
++.+.+- .+.+.++..+.+++++++++++
T Consensus 58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 58 LVTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 9998873 3445566788899999999874
No 145
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=4.5e-05 Score=71.86 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=64.2
Q ss_pred cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.++.||++.|||.|. .|+++|..| ...|++|..+++.. .++.+.+++||+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI 205 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI 205 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence 589999999999998 999999997 57889999887621 357777899999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
|+.+++ .+ +++..+. +|+|++++|++-..
T Consensus 206 vI~AtG-~~---~~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 206 IVGAVG-KP---ELIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred EEEccC-CC---CcCCHHH---cCCCCEEEEEEEee
Confidence 999996 22 2677655 68999999997544
No 146
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=0.00069 Score=63.69 Aligned_cols=171 Identities=16% Similarity=0.234 Sum_probs=105.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+. +..|++++..+ ..+++. +++..+-. |= +|.+--
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p 118 (287)
T PRK14181 49 KKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KD-------VDGLHP 118 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cC-------cccCCh
Confidence 34556788887655543 346777766552 24689998754 345443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
. ..|-...+........++.-++.++ ++ .+.++.||++.|||-+. +|+.+|
T Consensus 119 ~---n~g~l~~g~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla 170 (287)
T PRK14181 119 V---NMGKLLLGETDGFIPCTPAGIIELL----KY---------------------YEIPLHGRHVAIVGRSNIVGKPLA 170 (287)
T ss_pred h---hHHHHhcCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1 0111111221123455565555443 11 13589999999999965 699999
Q ss_pred HHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328 182 RMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 182 ~~l~~a~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~ 257 (342)
.+|. .- ++.|..+..+ ..++.+.+++||+|+.+++- .+++..+
T Consensus 171 ~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADIvV~AvG~----p~~i~~~ 217 (287)
T PRK14181 171 ALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKTADIIIAAIGV----PLFIKEE 217 (287)
T ss_pred HHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHH
Confidence 9984 44 7888876432 14788999999999999983 3578777
Q ss_pred HHccCCCCcEEEecCCCc
Q 019328 258 RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 258 ~l~~mk~gailIN~sRG~ 275 (342)
.+ |+|+++||+|--.
T Consensus 218 ~i---k~GavVIDvGin~ 232 (287)
T PRK14181 218 MI---AEKAVIVDVGTSR 232 (287)
T ss_pred Hc---CCCCEEEEecccc
Confidence 75 7999999998654
No 147
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.93 E-value=3.3e-05 Score=73.78 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=63.9
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
+.|++|+|+|.|.||+.+++.+ +..| .+|++++|++... ..+...++. ......++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~g~----------~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKELGG----------NAVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHcCC----------eEEeHHHHHHHHhcCCEEE
Confidence 7899999999999999999997 4555 5799999987542 222222211 1111235678889999999
Q ss_pred EcCCCCcccccccCHhHHccC-CCCcEEEecCCC
Q 019328 242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRG 274 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~m-k~gailIN~sRG 274 (342)
.+.|... .+.++ +..++.. +++.++|+.+..
T Consensus 244 ~at~~~~-~~~~~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 244 SATGAPH-YAKIV-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred ECCCCCc-hHHHH-HHHHhhCCCCCeEEEEeCCC
Confidence 9999443 22222 2233222 357788888753
No 148
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.92 E-value=3e-05 Score=72.15 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..+|||||+|+||+++++.|.+ -+ -++++++|+.... ......+..+++.+||+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~-~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIEN-SNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHh-CCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence 3589999999999999999743 33 2589998865320 011235677888999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 287 (342)
++|+| ...++.++. +....++++ .+|.+.-|- ..+.+.+.+.
T Consensus 62 ilavk-p~~~~~vl~-~i~~~l~~~-~iIS~~aGi--~~~~l~~~~~ 103 (260)
T PTZ00431 62 VLAVK-PDLAGKVLL-EIKPYLGSK-LLISICGGL--NLKTLEEMVG 103 (260)
T ss_pred EEEeC-HHHHHHHHH-HHHhhccCC-EEEEEeCCc--cHHHHHHHcC
Confidence 99998 334444443 333345554 455554443 3555555553
No 149
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=0.00042 Score=65.50 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=104.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|++++....++ ..+++++.+.+.. ..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 123 (297)
T PRK14167 54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KD-------VDGFHP 123 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 34556788887655543 3567777665531 3689998754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++= ..+.++.||++.|||-+ .+|+.+|
T Consensus 124 ~---n~g~l~~g~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 174 (297)
T PRK14167 124 E---NVGRLVAGDAR-FKPCTPHGIQKLLA-------------------------AAGVDTEGADVVVVGRSDIVGKPMA 174 (297)
T ss_pred h---hhHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence 0 01111112222 34556665554441 12357999999999996 5699999
Q ss_pred HHHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328 182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 182 ~~l~~a~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~ 258 (342)
.+|.+.+ ++.|..+... ..++.+..++||+|+.++-- .+++..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (297)
T PRK14167 175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM 222 (297)
T ss_pred HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 9985443 7888876431 13688899999999999762 34777766
Q ss_pred HccCCCCcEEEecCCCc
Q 019328 259 LATMKKEAILVNCSRGP 275 (342)
Q Consensus 259 l~~mk~gailIN~sRG~ 275 (342)
+ |+|+++||+|--.
T Consensus 223 i---k~gaiVIDvGin~ 236 (297)
T PRK14167 223 L---SEGATVIDVGINR 236 (297)
T ss_pred c---CCCCEEEEccccc
Confidence 5 7999999998544
No 150
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.92 E-value=6.3e-05 Score=71.96 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..++++|||.|.+|+.+++.+...++ -+|.+|+|++++ .+.+.+.+. .. +.......++++++++||+|+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~~----~~---g~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAELR----AQ---GFDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHH----hc---CCceEEeCCHHHHHhcCCEEEE
Confidence 46899999999999999986533345 579999998764 333333221 10 1112234688999999999988
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.|.+ .-++..+ .++||+.+.-++
T Consensus 196 aT~s~---~pvl~~~---~l~~g~~i~~ig 219 (314)
T PRK06141 196 ATLST---EPLVRGE---WLKPGTHLDLVG 219 (314)
T ss_pred eeCCC---CCEecHH---HcCCCCEEEeeC
Confidence 87743 4556554 468998544444
No 151
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.91 E-value=5.1e-05 Score=72.95 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
-+++||||.|.+|+..++.+...+. -+|.+|||+.++. +.+.+.+. . .+.......+.++++++||+|+.|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~~----~---~g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRAS----D---YEVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHHH----h---hCCcEEEeCCHHHHhccCCEEEEe
Confidence 4789999999999998776533333 5799999998653 23322221 1 111123357899999999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
+|. +.-++..+. +|||+.+.++|.
T Consensus 200 T~s---~~P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 200 TPS---RKPVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecCC
Confidence 874 345565554 499999999984
No 152
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=0.00057 Score=64.58 Aligned_cols=171 Identities=20% Similarity=0.203 Sum_probs=106.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+. . ..|++++..+ ..+++. +++..+-. | -+|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (297)
T PRK14186 55 KACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHP 124 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 34556788887655433 356777766553 1 3689998754 344443 33333221 2 1222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
.. .|=...+.++ ....++.-++.++= ..+.++.||++.|||-+ .+|+.+|
T Consensus 125 ~n---~g~l~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~vvVIGrS~iVGkPla 175 (297)
T PRK14186 125 LN---LGRLVKGEPG-LRSCTPAGVMRLLR-------------------------SQQIDIAGKKAVVVGRSILVGKPLA 175 (297)
T ss_pred hh---HHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 11 1111122222 34455555554431 12358999999999995 5699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+... ..++.+..++||+|+.+++- .+++..+.+
T Consensus 176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i-- 220 (297)
T PRK14186 176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEMV-- 220 (297)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence 998 5779999877432 13788999999999999983 356777765
Q ss_pred CCCCcEEEecCCCcc
Q 019328 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~gailIN~sRG~~ 276 (342)
|+|+++||+|--.+
T Consensus 221 -k~gavVIDvGin~~ 234 (297)
T PRK14186 221 -KPGAVVVDVGIHRL 234 (297)
T ss_pred -CCCCEEEEeccccc
Confidence 79999999986553
No 153
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=0.00059 Score=64.00 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=105.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+. +.+|++++..+ ..+++. +++..+-. |=| -|+..+.+
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDV----DGl~~~N~ 125 (282)
T PRK14166 53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDV----DGFHPINV 125 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc----ccCChhhh
Confidence 34556788877655433 356777776653 24689998754 344443 33333221 211 12211111
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
-... .| ..++ ....++.-++.++= + .+.++.||++.|||-+. +|+.+|
T Consensus 126 g~l~-~g----~~~~-~~PcTp~avi~lL~----~---------------------y~i~l~Gk~vvVvGrS~iVGkPla 174 (282)
T PRK14166 126 GYLN-LG----LESG-FLPCTPLGVMKLLK----A---------------------YEIDLEGKDAVIIGASNIVGRPMA 174 (282)
T ss_pred HHHh-cC----CCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 1111 01 0122 34556666554441 1 23589999999999964 699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+..+ ..++.+..++||+|+.++.- .+++..+.+
T Consensus 175 ~lL-~~~~atVt~chs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~v-- 219 (282)
T PRK14166 175 TML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDMV-- 219 (282)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence 998 5678999877542 13688999999999999883 456777765
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 220 -k~GavVIDvGin~ 232 (282)
T PRK14166 220 -KEGVIVVDVGINR 232 (282)
T ss_pred -CCCCEEEEecccc
Confidence 7999999998433
No 154
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=0.00037 Score=65.80 Aligned_cols=172 Identities=16% Similarity=0.181 Sum_probs=103.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+.. ..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~~ 125 (297)
T PRK14168 56 KTAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KD-------VDGFHP 125 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence 34556788876654433 3577777765531 3689998754 344443 33332221 21 222111
Q ss_pred hHHHhCCceEEcCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHH
Q 019328 103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAY 180 (342)
Q Consensus 103 ~~a~~~gI~v~n~p-~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~v 180 (342)
. ..|-...+.. ......++.-++.++- ..+.++.||++.|||-+ .+|+.+
T Consensus 126 ~---n~g~l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPl 177 (297)
T PRK14168 126 V---NVGRLMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPI 177 (297)
T ss_pred h---hHHHHhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHH
Confidence 0 0111111110 1234555655554441 12458999999999995 579999
Q ss_pred HHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328 181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 181 A~~l~~a---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~ 257 (342)
|.+|.+. .++.|..+... ..++.+.+++||+|+.++.- .+++..+
T Consensus 178 a~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~ 225 (297)
T PRK14168 178 ANMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAGV----PNLVKPE 225 (297)
T ss_pred HHHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecCC----cCccCHH
Confidence 9998432 27888876432 13688889999999999862 3567777
Q ss_pred HHccCCCCcEEEecCCCc
Q 019328 258 RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 258 ~l~~mk~gailIN~sRG~ 275 (342)
.+ |+|+++||+|.-.
T Consensus 226 ~i---k~gavVIDvGin~ 240 (297)
T PRK14168 226 WI---KPGATVIDVGVNR 240 (297)
T ss_pred Hc---CCCCEEEecCCCc
Confidence 65 7999999998544
No 155
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.89 E-value=4.7e-05 Score=75.83 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=66.3
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|++++|+|.|.||+.+++.| ...|+ +|++++|++... ..+...++ . ......++.+.+.++|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~g-------~---~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEFG-------G---EAIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHcC-------C---cEeeHHHHHHHhccCCEE
Confidence 47899999999999999999997 68897 899999987542 22222221 0 011124566778899999
Q ss_pred EEcCCCCcccccccCHhHHccC-----CCCcEEEecCC
Q 019328 241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR 273 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~m-----k~gailIN~sR 273 (342)
+.+.|. ...++..+.++.+ +++.++|+.+-
T Consensus 247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 999773 3445666666543 24567777653
No 156
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=0.00071 Score=63.49 Aligned_cols=169 Identities=12% Similarity=0.177 Sum_probs=103.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+.+..++ ..+++++.+.+.. ..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~ 123 (282)
T PRK14180 54 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KD-------VDGFHP 123 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cc-------ccccCh
Confidence 34556788887654433 3466777655531 3679998754 344443 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+........++.-++.++= ..+.++.||++.|||-+ .+|+.+|
T Consensus 124 ~---n~g~l~~g~~~~~~PcTp~aii~lL~-------------------------~y~i~l~Gk~vvViGrS~~VGkPla 175 (282)
T PRK14180 124 T---NVGRLQLRDKKCLESCTPKGIMTMLR-------------------------EYGIKTEGAYAVVVGASNVVGKPVS 175 (282)
T ss_pred h---hHHHHhcCCCCCcCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 0 01111111101134455665554431 12358999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+... ..++.+..++||+|+.+++- .++|..+.+
T Consensus 176 ~lL-~~~~ATVt~chs~----------------------------T~dl~~~~k~ADIvIsAvGk----p~~i~~~~v-- 220 (282)
T PRK14180 176 QLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADMV-- 220 (282)
T ss_pred HHH-HHCCCEEEEEcCC----------------------------CCCHHHHhhhcCEEEEccCC----cCcCCHHHc--
Confidence 998 5678999887542 13688889999999999983 456777665
Q ss_pred CCCCcEEEecCC
Q 019328 262 MKKEAILVNCSR 273 (342)
Q Consensus 262 mk~gailIN~sR 273 (342)
|+|+++||+|-
T Consensus 221 -k~gavVIDvGi 231 (282)
T PRK14180 221 -KEGAVVIDVGI 231 (282)
T ss_pred -CCCcEEEEecc
Confidence 79999999984
No 157
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.86 E-value=0.00032 Score=70.76 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=91.1
Q ss_pred CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhh--------hhhhccCCCCCccccccCCHHHHhhc
Q 019328 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (342)
.+|+|||+|.+|..+|-.|+. +.|.+|++||.++.+. +....+. .+.+.. .. .-......+.++.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence 479999999999999998853 4579999999887642 2211110 000000 00 0001223567788999
Q ss_pred CCEEEEcCCCCcccc------------ccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee-cCCC
Q 019328 237 ADVISLHPVLDKTTY------------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFED 301 (342)
Q Consensus 237 sDiV~l~lplt~~t~------------~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD-V~~~ 301 (342)
||++++|+| ||... .+. -++.-+.+++|.++|.-|.-.+=-++.+.+-|.+.. .|.-+. +|.+
T Consensus 79 advi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~P 156 (473)
T PLN02353 79 ADIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNP 156 (473)
T ss_pred CCEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECC
Confidence 999999997 33211 111 134556679999999999877776778888777531 121111 3456
Q ss_pred CCCCC----CCccCCCceEEc
Q 019328 302 EPYMK----PGLSEMKNAIVV 318 (342)
Q Consensus 302 EP~~~----~~L~~~~nvi~T 318 (342)
|=+.+ ..+...|+|++-
T Consensus 157 Erl~~G~a~~d~~~p~riViG 177 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIG 177 (473)
T ss_pred CccCCCCcccccCCCCEEEEc
Confidence 65432 357788888753
No 158
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.83 E-value=9.9e-05 Score=71.06 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=73.8
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC-----ccccccCCHHHHhhcCCEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----VTWKRASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~ell~~sDiV 240 (342)
++|+|||.|.||..+|..| ...|.+|.+|+|.... +.... .+.......... .......+. +.++.+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARIG--DELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHHH--HHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 5799999999999999998 4668999999986432 11111 111000000000 001112344 567899999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 293 (342)
++++|. ++....+ ++....++++.++|.+.-| +-..+.+.+.+...++..
T Consensus 78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 999984 4445444 4455667889999888654 444566777776655444
No 159
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.82 E-value=0.0012 Score=63.75 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=64.3
Q ss_pred cccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.++.||++.|||-+ .+|+.+|.+| ..-++.|..+... ..++.+..++||+
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADI 277 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSR----------------------------TKNPEEITREADI 277 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence 58999999999995 5699999998 5778999887532 1478899999999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
|+.++. ..++|..+.+ |+|+++||+|--.
T Consensus 278 VIsAvG----kp~~i~~d~v---K~GAvVIDVGIn~ 306 (364)
T PLN02616 278 IISAVG----QPNMVRGSWI---KPGAVVIDVGINP 306 (364)
T ss_pred EEEcCC----CcCcCCHHHc---CCCCEEEeccccc
Confidence 999987 3456777765 7999999998544
No 160
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.82 E-value=8.9e-05 Score=70.11 Aligned_cols=121 Identities=11% Similarity=0.181 Sum_probs=73.8
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
.+|+|+|.|.||..+|..|+ ..|.+|..|+| .+. .+...+ .+....... ..........+.+++...+|+|++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PKR-AKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HHH-HHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 37999999999999999985 56899999998 432 222211 111111100 00000111345667778999999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 293 (342)
|. .++...+ +.....++++.++|.+.-| +-.++.+.+.+.+.++.+
T Consensus 77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 94 3344333 3334446778888877665 444677777776655543
No 161
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.80 E-value=0.00092 Score=64.17 Aligned_cols=172 Identities=16% Similarity=0.261 Sum_probs=106.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|++.+....++ ..+++|+.+.+.. ..|++++..+ ..+++.. ++...-. |=| -|+....+
T Consensus 109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDV----DGl~p~N~ 181 (345)
T PLN02897 109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDV----DGFHPLNV 181 (345)
T ss_pred HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc----cCCCHHHH
Confidence 34556788877655443 3567777766531 4689998754 3455543 3332211 211 12211111
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
-.....|- .++ ....++.-++.++- ..+.++.||++.|||-+. +|+.+|
T Consensus 182 G~L~~~~~----~~~-~~PCTp~avi~LL~-------------------------~~~i~l~GK~vvVIGRS~iVGkPla 231 (345)
T PLN02897 182 GNLAMRGR----EPL-FVSCTPKGCVELLI-------------------------RSGVEIAGKNAVVIGRSNIVGLPMS 231 (345)
T ss_pred HHHhcCCC----CCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccccHHHH
Confidence 11111000 122 34556666655541 123589999999999965 699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..+... ..++++..++||+|+.++.- .+++..+.+
T Consensus 232 ~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~v-- 276 (345)
T PLN02897 232 LLL-QRHDATVSTVHAF----------------------------TKDPEQITRKADIVIAAAGI----PNLVRGSWL-- 276 (345)
T ss_pred HHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence 997 5678999876432 13688899999999999883 456777765
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 277 -k~GavVIDVGin~ 289 (345)
T PLN02897 277 -KPGAVVIDVGTTP 289 (345)
T ss_pred -CCCCEEEEccccc
Confidence 7999999998544
No 162
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.79 E-value=0.00016 Score=68.99 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=68.4
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
...++++|+|.|.+|+..++.+...++. +|.+|+|++.+ .+.+.+.+.. . ..... ..+.++++++||+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~~~----~---~~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHARA----L---GPTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHHHh----c---CCeeE-ECCHHHHhhcCCEEE
Confidence 3568999999999999999987444564 69999999764 3344433321 0 11111 468899999999999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
.+.|.+ .-+|.. .+|||+.++.+|.-
T Consensus 194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 194 TATTSR---TPVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred EccCCC---CceeCc----cCCCCCEEEecCCC
Confidence 998844 355543 36999999999843
No 163
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.0014 Score=61.75 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=104.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+. +..|++++..+ ..+++. +++..+-. | -+|.+.-
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (293)
T PRK14185 54 KACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHP 123 (293)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence 34556788886655443 346777775543 14689998754 344443 33333221 2 1222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
.. .|-...+.++ ....++.-++.++= ..+.++.||++.|||-+ .+|+.+|
T Consensus 124 ~N---~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~GK~vvViGrS~iVGkPla 174 (293)
T PRK14185 124 IN---VGRMSIGLPC-FVSATPNGILELLK-------------------------RYHIETSGKKCVVLGRSNIVGKPMA 174 (293)
T ss_pred hh---HHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 11 1111112233 34566666554441 11347999999999995 5699999
Q ss_pred HHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328 182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 182 ~~l~~a---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~ 258 (342)
.+|.+. +++.|..+... ..++.+..++||+|+.++.- .++|..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (293)
T PRK14185 175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM 222 (293)
T ss_pred HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 998432 37888876432 14788899999999999883 35677665
Q ss_pred HccCCCCcEEEecCCCc
Q 019328 259 LATMKKEAILVNCSRGP 275 (342)
Q Consensus 259 l~~mk~gailIN~sRG~ 275 (342)
+ |+|+++||+|--.
T Consensus 223 v---k~gavVIDvGin~ 236 (293)
T PRK14185 223 V---KEGAVVIDVGTTR 236 (293)
T ss_pred c---CCCCEEEEecCcc
Confidence 4 7999999998544
No 164
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.77 E-value=0.00018 Score=68.76 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=60.9
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+++||+|.|..|+.-++.++.-++. +|.+|+|++.. .++|.+.+. . .........+.++++++||+|+.+.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~~----~---~~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARLR----D---LGVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHHH----C---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhhc----c---ccccceeccchhhhcccCCEEEEcc
Confidence 5899999999999999987555665 79999999754 344444332 1 1333445679999999999999998
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~ 276 (342)
|.+..+ -++..+ .+|||+.++.++....
T Consensus 201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence 855433 566655 4689999999987644
No 165
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.76 E-value=0.00016 Score=65.52 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
.+|+||| .|.||+.+|+.| ...|.+|.+++|+++.. +.....+...+...+. ... ....+..+.++++|+|++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~-~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIK-VTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-Cce-EEEeChHHHHhcCCEEEEEC
Confidence 3799997 999999999998 46789999999986542 2211111000000000 000 11236678899999999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
|.. ....++ ++.-..++ +.++|+++-|--.
T Consensus 77 p~~-~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWD-HVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred CHH-HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 943 233333 22222343 5899999777443
No 166
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00027 Score=67.06 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=93.8
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~ 243 (342)
-++|||||+|++|+-+|+.+ ...|..++.+||..-... ...| +....+.+.+++ .++|+|.+|
T Consensus 52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssa---a~~y------------g~~~ft~lhdlcerhpDvvLlc 115 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSA---AEKY------------GSAKFTLLHDLCERHPDVVLLC 115 (480)
T ss_pred ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHH---HHHh------------cccccccHHHHHhcCCCEEEEE
Confidence 35799999999999999997 578999999999753211 1122 223356677766 578999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CC---CCccCCCceEEc
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK---PGLSEMKNAIVV 318 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~---~~L~~~~nvi~T 318 (342)
+.. ..+..++-.--++++|.|++++++-.-....-+++.+-|-+. .|....-|. |+ +....+|=|+.-
T Consensus 116 tsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydk 188 (480)
T KOG2380|consen 116 TSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDK 188 (480)
T ss_pred ehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEE
Confidence 763 234444444456778999999999888888888888888764 355555553 22 234457777766
Q ss_pred CCCC
Q 019328 319 PHIA 322 (342)
Q Consensus 319 PHia 322 (342)
-.++
T Consensus 189 vRig 192 (480)
T KOG2380|consen 189 VRIG 192 (480)
T ss_pred eecc
Confidence 5555
No 167
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.74 E-value=0.00026 Score=62.65 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=65.2
Q ss_pred cccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc----cCCHHHH
Q 019328 159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR----ASSMDEV 233 (342)
Q Consensus 159 ~g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~el 233 (342)
.+.++.||++.|||-+. +|+++|..| ..-|+.|..+|.+.-.. | .+... ....... ..++.+.
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~---~-------~~~~~-~~hs~t~~~~~~~~l~~~ 123 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV---F-------TRGES-IRHEKHHVTDEEAMTLDC 123 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc---c-------ccccc-cccccccccchhhHHHHH
Confidence 46799999999999965 699999998 57799999986432110 0 00000 0000000 1127789
Q ss_pred hhcCCEEEEcCCCCcccccc-cCHhHHccCCCCcEEEecCC
Q 019328 234 LREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 273 (342)
Q Consensus 234 l~~sDiV~l~lplt~~t~~l-i~~~~l~~mk~gailIN~sR 273 (342)
+++||+|+.+++- .++ +..+.+ |+|+++||+|-
T Consensus 124 ~~~ADIVIsAvG~----~~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 124 LSQSDVVITGVPS----PNYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred hhhCCEEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence 9999999999983 344 666665 79999999983
No 168
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.68 E-value=0.00031 Score=67.58 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=66.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..++++|||.|.+|+..++.++...+. +|.+|+|++++. +++.+.+. .. .+.....+.++++++++||+|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~~----~~--~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEIQ----SK--FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHHH----Hh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence 467899999999999998775434555 688999997642 33333221 00 11112235688999999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
|.|.. .-++. +.+|+|+.++.++.
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCC
Confidence 99844 34443 56699999988865
No 169
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.67 E-value=0.00033 Score=62.06 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccc---cccCCHHHHhhc
Q 019328 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE 236 (342)
Q Consensus 161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~ 236 (342)
.++.++++.|+|. |.+|+.+++.++ ..|.+|..++|+..+ .+.+.+.+.. ..+ ..... ....++.+.+++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFG-EGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcC-CcEEEeeCCCHHHHHHHHhc
Confidence 4688999999995 999999999974 678899999998643 2222221110 000 00100 112334577889
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd 278 (342)
+|+|+.+.|....+ .+. .-...+++.+++|+.+...++
T Consensus 98 ~diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCCC
Confidence 99999998855431 111 111345577888877766543
No 170
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.64 E-value=0.00019 Score=67.47 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=73.3
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++.++++.|+|.|.+|+.+++.| ...| .+|.+++|+.++. +...+.+.. .. .... ..++.+.+..+|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~~----~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFGA----LG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhhh----cc--ceee--cccchhccccCCEE
Confidence 67899999999999999999998 5889 6899999987542 222222210 00 0011 12445677899999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
+.++|..-....-...-.+..++++.+++++.=.+ ..+.=|.+|-+.|
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P-~~T~ll~~A~~~G 237 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP-LPTPFLAWAKAQG 237 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC-CCCHHHHHHHHCc
Confidence 99999654321111111234567888888886533 3444444444444
No 171
>PRK06046 alanine dehydrogenase; Validated
Probab=97.61 E-value=0.00042 Score=66.67 Aligned_cols=95 Identities=20% Similarity=0.287 Sum_probs=64.9
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
-+++||||.|.+|+..++.++...+. +|.+|||+.... +.+.+.+.. ..+.....+.+++++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~~------~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMSS------VVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHHh------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence 46899999999999999887434565 577899997543 333322210 01111223568899997 9999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.|.+ .-+|..+. +|+|+.+..+|.
T Consensus 201 Tps~---~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 201 TPSR---KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred cCCC---CcEecHHH---cCCCCEEEecCC
Confidence 9843 45666654 489999888873
No 172
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.61 E-value=0.00052 Score=64.72 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=76.0
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl 246 (342)
+|+|||.|.||..+|..|+ ..|.+|..++|+.+.. +.... .+.... .+..........+.+++ +.+|+|++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAHL-DALNE-NGLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHHH-HHHHH-cCCccc-CCceeecccCCCChhHc-CCCCEEEEeccc
Confidence 6999999999999999984 6689999999865431 22111 111010 01000000123456665 899999999994
Q ss_pred CcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEE--eecCCCCC
Q 019328 247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG--LDVFEDEP 303 (342)
Q Consensus 247 t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaa--lDV~~~EP 303 (342)
.++...+ +.....+.+++.+|...-| +-.++.+.+.+....+.++. ..++..+|
T Consensus 77 -~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p 132 (304)
T PRK06522 77 -YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP 132 (304)
T ss_pred -ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence 3344432 3344456677888888777 33356666666655554432 23334455
No 173
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.60 E-value=0.00046 Score=66.57 Aligned_cols=102 Identities=28% Similarity=0.372 Sum_probs=72.2
Q ss_pred cccccCCCEEEEEcc-ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (342)
.|.++.||++.|+|. |.||+.+++.|+...| .+++.++|+... ......++. .....++++.+.+
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el~------------~~~i~~l~~~l~~ 215 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAELG------------GGKILSLEEALPE 215 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHhc------------cccHHhHHHHHcc
Confidence 345799999999998 8999999999853456 489899987543 222111110 0112468899999
Q ss_pred CCEEEEcCCCCccccc-ccCHhHHccCCCCcEEEecCCCccCCH
Q 019328 237 ADVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 237 sDiV~l~lplt~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~ 279 (342)
+|+|+.+.-. ... .++.+.+ +++.++|+.|+-.=||.
T Consensus 216 aDiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 216 ADIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CCEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 9998877542 234 3777654 79999999999887775
No 174
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00033 Score=65.75 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=105.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++++.+.+. +..|++++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~ 125 (284)
T PRK14177 56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KD-------VDGVTT 125 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cccCCh
Confidence 44566788877654433 346777766553 14689998754 234433 33333221 21 222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA 181 (342)
. ..|-...+.+. ....++.-++.++= ..+.++.||++.|||-+ .+|+.+|
T Consensus 126 ~---n~g~l~~g~~~-~~PcTp~avi~ll~-------------------------~y~i~l~Gk~vvViGrS~iVGkPla 176 (284)
T PRK14177 126 L---SFGKLSMGVET-YLPCTPYGMVLLLK-------------------------EYGIDVTGKNAVVVGRSPILGKPMA 176 (284)
T ss_pred h---hHHHHHcCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 1 11111122222 34455655554331 01358999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
..| ..-|+.|..++.+ ..++.+..++||+|+.++.- .+++..+.+
T Consensus 177 ~lL-~~~~atVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~i-- 221 (284)
T PRK14177 177 MLL-TEMNATVTLCHSK----------------------------TQNLPSIVRQADIIVGAVGK----PEFIKADWI-- 221 (284)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEeCCC----cCccCHHHc--
Confidence 998 5778999987642 13688899999999999883 456777665
Q ss_pred CCCCcEEEecCCCc
Q 019328 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~gailIN~sRG~ 275 (342)
|+|+++||+|--.
T Consensus 222 -k~gavVIDvGin~ 234 (284)
T PRK14177 222 -SEGAVLLDAGYNP 234 (284)
T ss_pred -CCCCEEEEecCcc
Confidence 7999999998533
No 175
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.58 E-value=0.00061 Score=65.55 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=66.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..++++|||.|.+|+..++.++..++. +|.+|+|+..+ .+++...+.. ..+.......++++.+++||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~~------~~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLSS------LLGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh------hcCceEEEeCCHHHHhccCCEEEE
Confidence 357999999999999999987434674 69999999764 2333332210 001122234689999999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.|.+ .-+|..+. +|+|+.+..++
T Consensus 201 aT~s~---~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 201 TTPSE---TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred ecCCC---CcEecHHH---cCCCcEEEeeC
Confidence 98853 35666554 58998888776
No 176
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.58 E-value=0.00023 Score=68.94 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~ 256 (342)
|..+|..|+ ..|.+|++|||+.....+...+. +...+ .....+..+++++||+|++++|....++.++ .
T Consensus 32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 788999874 66899999999875321101110 11111 2234578888999999999999655467766 4
Q ss_pred hHHccCCCCcEEEecCCCccCCH-HHHHHHHH
Q 019328 257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 287 (342)
Q Consensus 257 ~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~ 287 (342)
.....+++|+++||++.+..... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67788899999999999986655 56666664
No 177
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.57 E-value=0.00016 Score=67.59 Aligned_cols=96 Identities=26% Similarity=0.321 Sum_probs=66.0
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
-|.||||+|||||.-|+.=|..| +-.|.+|++=-|..+...+. +.. .++ ...+.+|+.++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k-----------A~~--dGf-~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK-----------AKE--DGF-KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH-----------HHh--cCC-EeecHHHHhhcCCEEE
Confidence 58999999999999999999998 78888877544433221110 001 112 2468999999999999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
+.+|... -..++.++.-..||.|+.|- .|.|
T Consensus 80 ~L~PDe~-q~~vy~~~I~p~Lk~G~aL~-FaHG 110 (338)
T COG0059 80 ILLPDEQ-QKEVYEKEIAPNLKEGAALG-FAHG 110 (338)
T ss_pred EeCchhh-HHHHHHHHhhhhhcCCceEE-eccc
Confidence 9999433 23444556667788887553 3444
No 178
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.55 E-value=0.00087 Score=61.19 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=71.8
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCC---------hhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
.++.|+++.|.|+|++|+.+|+.| ..+|++|++. |.+ ...+........+... ........+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~------~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL------GFPGAERITN 99 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc------cCCCceecCC
Confidence 478999999999999999999998 6899999954 431 1111111111111100 0000001122
Q ss_pred HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (342)
Q Consensus 231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga 294 (342)
++++ ..||+++-|.+ .+.++.+...+++ =.+++--+-+++ . ..-.+.|+++.+.-+
T Consensus 100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~ 156 (227)
T cd01076 100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVV 156 (227)
T ss_pred ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence 3322 47899988865 4557888888887 346666666776 3 555577777765443
No 179
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.55 E-value=0.0011 Score=70.18 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=94.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--H-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--V-TAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~ 235 (342)
++|+|||.|.||..+|..++...|++|+.||++++...... . ..+....+...... .......+++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 58999999999999999864346999999999875321110 0 00111111100000 0111234664 579
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 315 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv 315 (342)
.||+|+=++|-+.+.++-+-++.=+.++++++|...+.+ +....|.++++. +-.-.++--|.+ +..-||.+ |
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP--~~~~~lVE---v 455 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP--VEKMPLVE---V 455 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc--cccCceEE---E
Confidence 999999999999998888888888889999888644333 445667777753 334555555532 21223433 6
Q ss_pred EEcCCCCCCcHHH
Q 019328 316 IVVPHIASASKWT 328 (342)
Q Consensus 316 i~TPHia~~t~~~ 328 (342)
+-+|+.+-.|.+.
T Consensus 456 v~g~~T~~~~~~~ 468 (699)
T TIGR02440 456 IPHAGTSEQTIAT 468 (699)
T ss_pred eCCCCCCHHHHHH
Confidence 6667655433333
No 180
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.55 E-value=0.00035 Score=67.63 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=66.5
Q ss_pred EEEEEccChHHHHHHHHHHh-c------CCcEEEEEcCCh---hhHHHHHHhhhhhhhccC----C-CCCccccccCCHH
Q 019328 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN----G-EQPVTWKRASSMD 231 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~-a------~g~~V~~~d~~~---~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~ 231 (342)
+|+|||.|+.|.++|..|+. + |+.+|..|.+.. .....+ .+....... + ..+.......+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~---~in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE---IINTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH---HHHhcCCCccccCCCcCCCCeEEECCHH
Confidence 58999999999999998753 3 448999998732 111111 111100000 0 0111122346899
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd 278 (342)
++++.||+|++++|. ...+. +-.+.-..++++..+|+++-|=-.+
T Consensus 78 eal~~ADiIIlAVPs-~~i~~-vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 78 EAAKGADILVFVIPH-QFLEG-ICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHhcCCEEEEECCh-HHHHH-HHHHHHhhcCCCCEEEEEeCCcccC
Confidence 999999999999992 22333 2344445678899999998885444
No 181
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.52 E-value=0.001 Score=70.53 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=96.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~ 235 (342)
++|+|||.|.||..+|..++ ..|++|+.||++.+..... .. ..+....+...... .......+++ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE 391 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 68999999999999999975 6699999999997642111 00 01111111100000 0111234664 469
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 315 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv 315 (342)
.||+|+=++|-..+.++-+-++.=+.++++++|...+.+ +....|.+++.. +-.-.++--|.+-+ .-||.+ |
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P~~--~~~lVE---v 463 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNPVH--RMPLVE---V 463 (715)
T ss_pred CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCccc--ccceEE---e
Confidence 999999999999999988888888889999988654333 455667777753 33455555553322 223433 5
Q ss_pred EEcCCCCCCcHHHH
Q 019328 316 IVVPHIASASKWTR 329 (342)
Q Consensus 316 i~TPHia~~t~~~~ 329 (342)
+-+||.+-.|.+..
T Consensus 464 v~g~~T~~~~~~~~ 477 (715)
T PRK11730 464 IRGEKTSDETIATV 477 (715)
T ss_pred eCCCCCCHHHHHHH
Confidence 66666654444433
No 182
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00046 Score=65.10 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=65.0
Q ss_pred ccccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 160 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 160 g~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
+.++.||++.|||-+ .+|+.+|..| ..-|+.|..+... ..++.+.+++||
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~----------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSA----------------------------TRDLADYCSKAD 205 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 358999999999995 5799999998 5789999887542 136889999999
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
+|+.++.- .+++..+.+ |+|+++||+|--.
T Consensus 206 IvVsAvGk----p~~i~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 206 ILVAAVGI----PNFVKYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred EEEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence 99999983 456777776 6999999998544
No 183
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.51 E-value=0.00042 Score=67.61 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=66.2
Q ss_pred CEEEEEccChHHHHHHHHHHhc------CCcEEEEEcCChhhHHHHHHhhhhhhhc-----cCCCCCccccccCCHHHHh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATRLEKFVTAYGQFLK-----ANGEQPVTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a------~g~~V~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ell 234 (342)
++|+|||.|..|.++|..|+.. ||.+|..|.++.........+.....-. ..-..+.......++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 5899999999999999998533 4578888877653100000010000000 0001111222346888999
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHc--cCCCCcEEEecCCCccCCH
Q 019328 235 READVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~--~mk~gailIN~sRG~~vd~ 279 (342)
+.||+|++++| ++...-+-++.-. .+++++++|+++-|=-.++
T Consensus 92 ~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 92 EDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred hcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 99999999999 3322222223323 4666889999887754443
No 184
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.50 E-value=0.00054 Score=65.59 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=67.7
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
-+++||+|.|..++.-++.+...+.. +|.+|+|++.+. ++|.+.. +.. ........+.+++++.||+|+.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~~----~~~---~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQYA----QAL---GFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----Hhc---CCcEEEECCHHHHhcCCCEEEEe
Confidence 56899999999999999886544444 799999998653 3333221 111 12233357899999999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
.| .+.-+|..+. +|||+.++.+|
T Consensus 200 T~---s~~P~~~~~~---l~~G~hi~~iG 222 (315)
T PRK06823 200 TP---SREPLLQAED---IQPGTHITAVG 222 (315)
T ss_pred cC---CCCceeCHHH---cCCCcEEEecC
Confidence 76 4456676654 57999999997
No 185
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.50 E-value=0.0016 Score=69.15 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=95.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~ 235 (342)
++|+|||.|.||..+|..++...|++|..||++++..... .. ..+....+...... .......++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 6899999999999999987436799999999987532111 00 01111111111000 011123456 4569
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 315 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv 315 (342)
.||+|+=++|-+.+.+.-+.++.=+.++|+++|...+. -+....|.+.+.. +-.-.++--|.+ +.--||.+ |
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~Hff~P--~~~~~lVE---v 460 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAAR-PEQVIGLHYFSP--VEKMPLVE---V 460 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCc-ccceEEEecCCc--cccCceEE---E
Confidence 99999999999999888888888888999999975443 3556777777753 334556666632 21123333 5
Q ss_pred EEcCCCCCCcHHH
Q 019328 316 IVVPHIASASKWT 328 (342)
Q Consensus 316 i~TPHia~~t~~~ 328 (342)
+-+|+.+-.|.+.
T Consensus 461 v~g~~Ts~~~~~~ 473 (708)
T PRK11154 461 IPHAKTSAETIAT 473 (708)
T ss_pred ECCCCCCHHHHHH
Confidence 6666554433333
No 186
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.48 E-value=0.00054 Score=64.75 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=65.1
Q ss_pred ccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 160 g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
+.++.||++.|||-+. +|+.+|..| ..-|+.|..+... ..++++.+++||
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSR----------------------------TPDPESIVREAD 212 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 3589999999999965 699999998 5679999887532 136889999999
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
+|+.++.- .++|..+.+ |+|+++||+|--.
T Consensus 213 Ivv~AvGk----~~~i~~~~v---k~gavVIDvGin~ 242 (299)
T PLN02516 213 IVIAAAGQ----AMMIKGDWI---KPGAAVIDVGTNA 242 (299)
T ss_pred EEEEcCCC----cCccCHHHc---CCCCEEEEeeccc
Confidence 99999873 367877775 7999999998544
No 187
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.46 E-value=0.00042 Score=64.52 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=64.8
Q ss_pred cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+|+||++.|||-++| |+.+|..| ..-++.|.++.... .++.+..++||+
T Consensus 152 i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADI 202 (283)
T COG0190 152 IDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNADI 202 (283)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCE
Confidence 5899999999999876 99999998 57899998876431 378888999999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
|+.++-. .++|..+. .|+|+++|+++--.+-
T Consensus 203 vv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~ 233 (283)
T COG0190 203 VVVAVGK----PHFIKADM---VKPGAVVIDVGINRVN 233 (283)
T ss_pred EEEecCC----cccccccc---ccCCCEEEecCCcccc
Confidence 9999862 35665444 5899999999865543
No 188
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.44 E-value=0.00046 Score=66.79 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hh-hhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YG-QFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+|+|||.|.+|..+|..|+ ..| .+..|.+++... +..... .. ..+......+.......++++.++.+|+|+++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~~-~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAETA-DDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHHH-HHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 57999999999999999985 556 577777765432 111110 00 00000000011112345788889999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
+| +..++..+ ++....+++++.+|++.-|=-.
T Consensus 85 vp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 85 VP-SHGFRGVL-TELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred eC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCCcC
Confidence 99 33344433 3334456888889998886433
No 189
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00067 Score=63.79 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=103.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+. +..|++++..+ ..+++.. ++..+-. | -+|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~ 123 (286)
T PRK14184 54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHP 123 (286)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCH
Confidence 34566788887655443 356777776553 14689998754 3444432 3332211 2 1222211
Q ss_pred hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA 181 (342)
.. .|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-+. +|+.+|
T Consensus 124 ~N---~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla 174 (286)
T PRK14184 124 EN---MGRLALGLPG-FRPCTPAGVMTLL----ER---------------------YGLSPAGKKAVVVGRSNIVGKPLA 174 (286)
T ss_pred hh---HHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 10 1111112233 3445555444333 11 23589999999999965 699999
Q ss_pred HHHHhc----CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328 182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 182 ~~l~~a----~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~ 257 (342)
..| .. -++.|..+..+ ..++.+.+++||+|+.++. ..++|.++
T Consensus 175 ~lL-~~~~~~~~AtVt~~hs~----------------------------t~~l~~~~~~ADIVI~AvG----~p~li~~~ 221 (286)
T PRK14184 175 LML-GAPGKFANATVTVCHSR----------------------------TPDLAEECREADFLFVAIG----RPRFVTAD 221 (286)
T ss_pred HHH-hCCcccCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecC----CCCcCCHH
Confidence 998 45 67888876532 1368899999999999996 35678887
Q ss_pred HHccCCCCcEEEecCC
Q 019328 258 RLATMKKEAILVNCSR 273 (342)
Q Consensus 258 ~l~~mk~gailIN~sR 273 (342)
.+ |+|+++||+|-
T Consensus 222 ~v---k~GavVIDVGi 234 (286)
T PRK14184 222 MV---KPGAVVVDVGI 234 (286)
T ss_pred Hc---CCCCEEEEeee
Confidence 77 89999999984
No 190
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.43 E-value=0.00042 Score=62.24 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=60.9
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-ccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDi 239 (342)
-++.|+++.|||.|.+|..-++.| ..+|++|.++++...+....+.+ .+ .+.+. .... .+.+..+|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEE
Confidence 368999999999999999999998 58999999999987654333211 11 11111 1112 345678999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
|+.+....+ +|.......+...++||+
T Consensus 73 Vi~at~d~~-----ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 73 VIAATDDEE-----LNRRVAHAARARGVPVNV 99 (205)
T ss_pred EEECCCCHH-----HHHHHHHHHHHcCCEEEE
Confidence 888866432 334444444444566664
No 191
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.41 E-value=0.0019 Score=60.00 Aligned_cols=127 Identities=19% Similarity=0.124 Sum_probs=68.9
Q ss_pred HHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328 180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 180 vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~ 258 (342)
+|+.|+ +++..+|++||+++.....+... + +......+ .+.++++|+|++|+|... +.. +-++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g---~~~~~~~~-~~~~~~~DlvvlavP~~~-~~~-~l~~~ 65 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------G---IIDEASTD-IEAVEDADLVVLAVPVSA-IED-VLEEI 65 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------T---SSSEEESH-HHHGGCCSEEEE-S-HHH-HHH-HHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------C---CeeeccCC-HhHhcCCCEEEEcCCHHH-HHH-HHHHh
Confidence 355552 24458999999998754332111 1 11122223 567899999999999332 333 33556
Q ss_pred HccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe-ecCCCCCC-C---CCCccCCCceEEcCCCC
Q 019328 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPY-M---KPGLSEMKNAIVVPHIA 322 (342)
Q Consensus 259 l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal-DV~~~EP~-~---~~~L~~~~nvi~TPHia 322 (342)
...+++|+++++++.-.---.+++.+.+..+ ....+. =-|-+|-. + ...|+.-.++++||+-.
T Consensus 66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 6679999999999876644444555555522 222221 12222211 1 23688888999999865
No 192
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.40 E-value=0.0012 Score=62.75 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=66.6
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
-+++||||.|..|+.-++.+..-++. +|.+|+|++.+. ++|.+.+.. . .+.......+.++++.+||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~~~----~--~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERFSK----E--FGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHHHH----h--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 47899999999999999886544555 699999998653 334333221 1 112233357899999999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.|. +.-+|..+.+ |||+-++-++.
T Consensus 190 T~s---~~P~~~~~~l---~pg~hV~aiGs 213 (301)
T PRK06407 190 TNS---DTPIFNRKYL---GDEYHVNLAGS 213 (301)
T ss_pred cCC---CCcEecHHHc---CCCceEEecCC
Confidence 873 4566766644 78877666653
No 193
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0019 Score=62.05 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=69.8
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
-+++||||.|..++.-++.+..-|+. +|.+|+|++... +++... ++.... .......+.+++++.||+|+.+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~~----l~~~~~--~~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFAAR----LRKRGG--EAVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHHHH----HHhhcC--ccceeccCHHHHhhcCCEEEEe
Confidence 45899999999999999987656766 699999998753 222221 111111 1123457899999999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.|.++ -++..+.+ |||+.+..+|-
T Consensus 203 T~s~~---Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 203 TPSTE---PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred cCCCC---CeecHhhc---CCCcEEEecCC
Confidence 88654 66766665 69999999984
No 194
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.39 E-value=0.0014 Score=61.33 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=71.0
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~ 241 (342)
..+++++|+|.|.+|+.++..| ...|.+|.+++|+..+. +++.+.+. ..+ .....++++. +.++|+|+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~~----~~~-----~~~~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERFQ----RYG-----EIQAFSMDELPLHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHHh----hcC-----ceEEechhhhcccCccEEE
Confidence 5678999999999999999998 46789999999986542 22222211 001 0111233332 35799999
Q ss_pred EcCCCC--ccccc-ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 242 LHPVLD--KTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 242 l~lplt--~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
.++|.. ++... .+. .+.++++.+++++.-.+. ++ .|.++.++.
T Consensus 184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~ 229 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL 229 (270)
T ss_pred ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence 999974 22211 222 345789999999987664 34 455555544
No 195
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.39 E-value=0.00066 Score=60.75 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=70.2
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHH-H-Hhhhh--------hhhcc-CCCCCccc-
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F-VTAYG--------QFLKA-NGEQPVTW- 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~---~~~~~~~-~-~~~~~--------~~~~~-~~~~~~~~- 224 (342)
..|..++|+|+|.|.+|..+|+.|+ ..|. ++..+|+. .+..... + .+..+ ..+.. ........
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY 95 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 4688999999999999999999985 6687 68899887 2110000 0 00000 00000 00000000
Q ss_pred ---cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 225 ---KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 225 ---~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
....+++++++.+|+|+-| ..+++++.++..+....++...++...
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 0123456788999999999 578899999999999999877666643
No 196
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.38 E-value=0.0012 Score=63.63 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=63.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..++++|||.|.+|+..+..++...+ -+|.+|+|+..+ .+.+.+.+.. ..+.......++++++++||+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~~------~~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLRA------ELGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHhh------ccCceEEEeCCHHHHHccCCEEEE
Confidence 35789999999999998887643355 479999998764 3333332210 011222235689999999999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
+.|.. .-++..+. +++|+.+..+
T Consensus 204 aT~s~---~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 204 TTPSE---EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred eeCCC---CcEecHHH---cCCCceEEee
Confidence 98853 35565544 4677766654
No 197
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.38 E-value=0.00084 Score=64.05 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=71.3
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++|+|+|.|.-|.++|+.|+ .-|.+|..|.|+++...+-...............+.......+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 58999999999999999985 56688888888765321110000000000111222233346789999999999999999
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCccCCHH
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~ 280 (342)
. ...+..+ ++.-..+++++.+|+++-|=-.+.-
T Consensus 81 s-~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~ 113 (329)
T COG0240 81 S-QALREVL-RQLKPLLLKDAIIVSATKGLEPETG 113 (329)
T ss_pred h-HHHHHHH-HHHhhhccCCCeEEEEeccccCCCc
Confidence 2 3333332 2222456899999999987655443
No 198
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.37 E-value=0.0011 Score=63.61 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=58.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.|++|+|+|+|.+|....+. ++++|++|+++|++.++..... +.+.. .-........++.+-+.+|+++.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a~--~lGAd------~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELAK--KLGAD------HVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHHH--HhCCc------EEEEcCCchhhHHhHhhCcEEEEC
Confidence 48999999999999999998 5899999999999987643221 11100 000000011233333347888888
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEec
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
+| .. |- ...++.+|++..++-+
T Consensus 237 v~-~~-~~----~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VG-PA-TL----EPSLKALRRGGTLVLV 258 (339)
T ss_pred CC-hh-hH----HHHHHHHhcCCEEEEE
Confidence 77 33 22 3466667777666544
No 199
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.36 E-value=0.00049 Score=61.71 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.5
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
-++.|+++.|||.|.+|...++.| ...|++|.+++|...+......+. + ...+....-.++.+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~--------~--~i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE--------G--KIRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC--------C--CEEEEecCCChhhcCCceEE
Confidence 479999999999999999999987 578999999998764433322110 1 01111111113456789998
Q ss_pred EEcCCCCc
Q 019328 241 SLHPVLDK 248 (342)
Q Consensus 241 ~l~lplt~ 248 (342)
+.+....+
T Consensus 75 iaaT~d~e 82 (202)
T PRK06718 75 IAATNDPR 82 (202)
T ss_pred EEcCCCHH
Confidence 88877444
No 200
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.34 E-value=0.0024 Score=67.99 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=96.8
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~ 235 (342)
++|||||.|.||..+|..++ ..|++|..||++++..... .. ..+....+...... .......+++ .++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 413 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK 413 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 68999999999999999975 5699999999987642111 00 01111111110000 0111234565 568
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 315 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv 315 (342)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|... -+-++-..|.+++.. .-.-.++.-|.+ ...-||.+ |
T Consensus 414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff~P--~~~m~LvE---v 485 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYFSP--VDKMQLLE---I 485 (737)
T ss_pred cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEeccCC--cccCceEE---E
Confidence 999999999999998888888888889999988632 233556777777754 344566666643 21223443 6
Q ss_pred EEcCCCCCCcHHH
Q 019328 316 IVVPHIASASKWT 328 (342)
Q Consensus 316 i~TPHia~~t~~~ 328 (342)
+-+|+.+-.|.+.
T Consensus 486 v~g~~Ts~~~~~~ 498 (737)
T TIGR02441 486 ITHDGTSKDTLAS 498 (737)
T ss_pred eCCCCCCHHHHHH
Confidence 6677665444444
No 201
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.34 E-value=0.0011 Score=65.75 Aligned_cols=95 Identities=16% Similarity=0.275 Sum_probs=63.4
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|+++.|||.|.||+.+++.| ...|. ++++++|+..+ ...+...++. .......++.+++.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~~---------~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFRN---------ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhcC---------CeEecHHHHHHHhccCCEE
Confidence 58899999999999999999998 56775 79999998754 2333332210 0112234667889999999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.|.+. ...+|..+... .+.-++|+.+
T Consensus 247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 247 IAAVNV---LEYIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred EECcCC---CCeeECHHHhC--CCCeEEEEeC
Confidence 999873 23445554432 1234566654
No 202
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.34 E-value=0.0012 Score=64.03 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
-++++|||.|..++.-++.+..-+.. +|.+|+|++... +++.+.+. . .+.......++++++++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~~~----~---~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARNLA----G---PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHHHH----h---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999998876545555 699999997643 33333221 1 122233457899999999999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
.|.+ +..-+|..+. +|||+.++-+|
T Consensus 201 T~S~-~~~Pvl~~~~---lkpG~hV~aIG 225 (346)
T PRK07589 201 TADK-TNATILTDDM---VEPGMHINAVG 225 (346)
T ss_pred cCCC-CCCceecHHH---cCCCcEEEecC
Confidence 8732 2224455544 58999877765
No 203
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.32 E-value=0.0022 Score=68.02 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=93.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--H-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--V-TAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~ 235 (342)
++|+|||.|.||..+|..++ ..|++|+.||++.+...... . ..+....+...... .......+++ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 57999999999999999975 56999999999876422110 0 01111111111000 0111234554 469
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 315 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv 315 (342)
.||+|+=++|-+.+.+.-+-++.=+.++|+++|-..+.+ ++-..|..+++. +=.-.++=-|.+ ...-||.+ |
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~P--~~~~~lvE---v 463 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFNP--VHRMPLVE---V 463 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCCC--cccCceEe---e
Confidence 999999999998888888888888889999998654333 455667777653 233444444432 21123433 6
Q ss_pred EEcCCCCCCcHHH
Q 019328 316 IVVPHIASASKWT 328 (342)
Q Consensus 316 i~TPHia~~t~~~ 328 (342)
+-+++.+-.|.+.
T Consensus 464 v~g~~Ts~~~~~~ 476 (714)
T TIGR02437 464 IRGEKSSDETIAT 476 (714)
T ss_pred cCCCCCCHHHHHH
Confidence 6666665444443
No 204
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.32 E-value=0.0011 Score=63.62 Aligned_cols=105 Identities=23% Similarity=0.290 Sum_probs=62.4
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhccCCCCCccccccCCHHHHh-hcCCEEEEcC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVL-READVISLHP 244 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~l 244 (342)
+|+|||.|.||..+|..| ...|.+|..|+|+.... +..... .+.........+.......++++.+ ..+|+|++++
T Consensus 2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~~-~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav 79 (326)
T PRK14620 2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTTF-ESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV 79 (326)
T ss_pred EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHHH-HHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence 699999999999999998 46789999999976421 111110 0000000000011111235677766 5899999999
Q ss_pred CCCcccccccCHhHHc-cCCCCcEEEecCCCc
Q 019328 245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (342)
Q Consensus 245 plt~~t~~li~~~~l~-~mk~gailIN~sRG~ 275 (342)
|. .++...+ ++... .+++++.+|...-|-
T Consensus 80 ks-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 80 PT-QQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CH-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 93 3344433 22333 567777777776664
No 205
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.24 E-value=0.00032 Score=55.86 Aligned_cols=89 Identities=22% Similarity=0.197 Sum_probs=58.5
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
+++|+++.|||.|.+|..-++.| ...|++|.++++... ..+. ... +. ...+++.+..+|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~~-~~~~-------------~i~--~~-~~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEIE-FSEG-------------LIQ--LI-RREFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSEH-HHHT-------------SCE--EE-ESS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchh-hhhh-------------HHH--HH-hhhHHHHHhhheEEE
Confidence 68999999999999999999997 689999999999851 1110 011 11 123456688899999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.+.+... +++...+..+.-.+++|++-
T Consensus 66 ~at~d~~-----~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 66 AATDDPE-----LNEAIYADARARGILVNVVD 92 (103)
T ss_dssp E-SS-HH-----HHHHHHHHHHHTTSEEEETT
T ss_pred ecCCCHH-----HHHHHHHHHhhCCEEEEECC
Confidence 8877332 44555555665668888753
No 206
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.22 E-value=0.00087 Score=60.34 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=65.1
Q ss_pred EEEEEccChHHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 167 TVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+|||||+|.||+.+.+.+..+ .+.+ +.+||++.++.... . .........+++|++++.|+++=|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~------------~~~~~~~~s~ide~~~~~DlvVEaA 68 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-E------------ASVGRRCVSDIDELIAEVDLVVEAA 68 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-H------------hhcCCCccccHHHHhhccceeeeeC
Confidence 799999999999999987423 3344 77899987653211 0 0111222378999999999999886
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHH
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL 282 (342)
. ++.-. +-..+.+|.|--+|=+|-|.+.|+.-+
T Consensus 69 S--~~Av~---e~~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 69 S--PEAVR---EYVPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred C--HHHHH---HHhHHHHhcCCCEEEEechhccChHHH
Confidence 5 32222 224445667777777888888876543
No 207
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.22 E-value=0.0024 Score=62.71 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=69.4
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhhcCCEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 241 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~sDiV~ 241 (342)
-+++||+|.|..++.-++.++.-+. -+|.+|+|++.+. ++|.+.+.. . .... ......+.++++++||+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~~~----~-~~~~~~v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWVAE----T-YPQITNVEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHHHH----h-cCCCceEEEeCCHHHHHcCCCEEE
Confidence 4689999999999999998744353 3899999998643 334333221 1 0011 1233578999999999999
Q ss_pred EcCCCCc---ccccccCHhHHccCCCCcEEEecCCCc
Q 019328 242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 242 l~lplt~---~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
.|.+.+. ++.-+|..+. +|||+.++.++.-+
T Consensus 229 taT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 229 YCNSGETGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred EccCCCCCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 9987543 3446676654 47999887776533
No 208
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0029 Score=61.54 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=94.1
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-------CCCccc-cccCCHHHHhhcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVTW-KRASSMDEVLREA 237 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~l~ell~~s 237 (342)
.++||+|+|-||.++|-..+ .-|.+|+++|-+...- +..-.+-. ...+.. ....+. ....++++ ++.|
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~V-d~ln~G~~-~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~ 85 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKV-DKLNRGES-YIEEPDLDEVVKEAVESGKLRATTDPEE-LKEC 85 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHH-HHHhCCcc-eeecCcHHHHHHHHHhcCCceEecChhh-cccC
Confidence 78999999999999999875 6799999999886531 11100000 000000 000111 11234444 4589
Q ss_pred CEEEEcCCCCccccc-ccC--------HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC-CccEEEeecC---CCCCC
Q 019328 238 DVISLHPVLDKTTYH-LIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVF---EDEPY 304 (342)
Q Consensus 238 DiV~l~lplt~~t~~-li~--------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g-~i~gaalDV~---~~EP~ 304 (342)
|++++|+| ||-+.+ --+ +..-..||+|..+|==|+-.+=-++.++.-|.+. .=-..+-|.| .+|=.
T Consensus 86 dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv 164 (436)
T COG0677 86 DVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERV 164 (436)
T ss_pred CEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcccc
Confidence 99999998 554442 111 2345669999999999998888888888887764 1112224544 44432
Q ss_pred -CCC---CccCCCceEEcCCCCCCcHHHHH
Q 019328 305 -MKP---GLSEMKNAIVVPHIASASKWTRE 330 (342)
Q Consensus 305 -~~~---~L~~~~nvi~TPHia~~t~~~~~ 330 (342)
|.+ .+.+.|+|| ||.|..+.+
T Consensus 165 ~PG~~~~el~~~~kVI-----gG~tp~~~e 189 (436)
T COG0677 165 LPGNVLKELVNNPKVI-----GGVTPKCAE 189 (436)
T ss_pred CCCchhhhhhcCCcee-----ecCCHHHHH
Confidence 333 455667764 677766653
No 209
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.20 E-value=0.0054 Score=57.87 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=70.4
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.++++.|+|.|..|++++..| ...|+ +|..+||+..+. +.+.+.+.. .. .........++.+.++++|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l~~----~~-~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADELNA----RF-PAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHHHh----hC-CCeEEEeccchHhhhCCCCEE
Confidence 46679999999999999999997 57887 799999987542 232222210 00 001111224556677899999
Q ss_pred EEcCCCCccc--ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~lplt~~t--~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
+.+.|..-.. ...++. +.++++.+++++.=.+ .++.-|.+|-+.|
T Consensus 197 InaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P-~~T~ll~~A~~~G 243 (284)
T PRK12549 197 VHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP-LETELLRAARALG 243 (284)
T ss_pred EECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC-CCCHHHHHHHHCC
Confidence 9998864211 112232 3356677777765444 3344444444444
No 210
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.18 E-value=0.0046 Score=56.05 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=69.6
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCCh---------hhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
.++.|+++.|.|||++|+.+|+.| ...|++|++ .|.+. ....+. ....+ ...........+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~~~------~~~~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVALG------GSARVKVQDYFPG 90 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHhhC------CccccCcccccCc
Confidence 478999999999999999999998 688887665 55543 011111 11111 0000000001122
Q ss_pred HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 291 (342)
++++ ..||+++-|.+ .+.|+.+....++ =.+++--+.+++-+ .-.+.|++..+
T Consensus 91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi 144 (217)
T cd05211 91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI 144 (217)
T ss_pred ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 2322 47999998877 3468888888887 44666677777655 34566666544
No 211
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.17 E-value=0.00081 Score=55.06 Aligned_cols=97 Identities=14% Similarity=0.270 Sum_probs=53.4
Q ss_pred EEEEEc-cChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvGIiG-~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+||||| .|.+|+.+.++|++...+++.. ++++.... ..+...+. ...+........ .+.+ .+.++|+|++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADPE-ELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSGH-HHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cchh-HhhcCCEEEecC
Confidence 699999 9999999999987777777554 44443110 00001010 000011111111 2333 449999999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
|... ++. +.... .++|..+|+.|.-
T Consensus 75 ~~~~-~~~-~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 75 PHGA-SKE-LAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp CHHH-HHH-HHHHH---HHTTSEEEESSST
T ss_pred chhH-HHH-HHHHH---hhCCcEEEeCCHH
Confidence 9332 121 22222 4789999998743
No 212
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.16 E-value=0.0055 Score=58.25 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=95.2
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhccCCCCC------cc-ccccCCHHHHh
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP------VT-WKRASSMDEVL 234 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~------~~-~~~~~~l~ell 234 (342)
-+++||||.|.||+.+|..++. -|.+|..+|++........ ...+........... .. .....++. .+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l 80 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL 80 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence 4799999999999999999753 5699999999954311110 000110011100000 00 01122333 67
Q ss_pred hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK 313 (342)
Q Consensus 235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~ 313 (342)
+.||+|+=++|-+-+.++-+-++.=+..||+++|= |||+ +.-.++.++++ .+=...++=.|.+-| +..+=
T Consensus 81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~~-----~m~LV 151 (307)
T COG1250 81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPVP-----LMPLV 151 (307)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCCC-----cceeE
Confidence 99999999999998888888888888889999984 5544 34567788874 444556655554433 44444
Q ss_pred ceEEcCCCCCCcHHHH
Q 019328 314 NAIVVPHIASASKWTR 329 (342)
Q Consensus 314 nvi~TPHia~~t~~~~ 329 (342)
-||-+.+++-.|.+..
T Consensus 152 EvI~g~~T~~e~~~~~ 167 (307)
T COG1250 152 EVIRGEKTSDETVERV 167 (307)
T ss_pred EEecCCCCCHHHHHHH
Confidence 4677777654444433
No 213
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.15 E-value=0.0023 Score=59.40 Aligned_cols=103 Identities=13% Similarity=0.122 Sum_probs=65.3
Q ss_pred CEEEEEccChHHHHHHHHHHhc--CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a--~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~ 241 (342)
.+|||||+|.||+.+++.+.+. .++++. +|++.+.. .+.+.. . .....+++++ ..+.|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~~---------~-----~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALAG---------R-----VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhhc---------c-----CcccCCHHHHhhcCCCEEE
Confidence 5899999999999999987432 235544 46665432 121110 0 2235689997 58899999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC---HHHHHHHHHc
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ 288 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd---~~aL~~aL~~ 288 (342)
=|.. ++.-.-. -.+.++.|.-++=.|-|.+.| ++.|.++.++
T Consensus 68 E~A~--~~av~e~---~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 68 EAAG--QQAIAEH---AEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ECCC--HHHHHHH---HHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 8877 3222222 233356787888888899888 3455555544
No 214
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.14 E-value=0.0018 Score=62.36 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=59.9
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++.|+++.|||.|.||+.+|+.| ...|. +|++.+|+.... . |+. .....-+...++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~----~~~-------------~~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--P----YRT-------------VVREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--c----hhh-------------hhhhhhhcccCCCEE
Confidence 58899999999999999999998 57774 699999986421 0 100 000111345789999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
+.|..-|....-.+..+.++..++ -+||+.+=-.
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence 987433344444556665554332 3777765433
No 215
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.13 E-value=0.0017 Score=62.09 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=57.9
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
.+|||+|+|+||+.+++.+.+.-++++.+ +|+++...... ..+.....+.++++.+.|+|++|.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874344788775 68875221110 011122346777888999999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecC
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
|... . -+.....++.|.=+|+..
T Consensus 69 Ps~t--h---~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 69 GSAT--D---IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred CCcc--C---HHHHHHHHHcCCCEEECC
Confidence 8432 2 244455567776777764
No 216
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.11 E-value=0.002 Score=61.56 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=73.9
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc-CCCCCcc-ccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVT-WKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~ell~~sDiV~l~ 243 (342)
++|+|||.|.||..+|.+| ...|.+|..+.|..... .. ..+..+.. .+..... .....+.+ .+..+|+|+++
T Consensus 6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~---~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEA---VR-ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHH---HH-hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 5899999999999999998 56789999998875321 11 11111110 0100000 01112333 45789999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal 296 (342)
+|.. ++...+ +.....+++++.++...-| +-.++.|.+.+...++.++..
T Consensus 80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 9944 333322 2333446788888887666 446677777887767666543
No 217
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.11 E-value=0.0026 Score=61.04 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=74.2
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
+..++|+|||.|.+|..+|..++ ..| .++..||.+.......-.+... .....+ .........+.+ .++.||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~-~~~~~~-~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKH-FSTLVG-SNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhh-hccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence 45679999999999999999864 445 6899999876432111111100 000000 011112235666 679999999
Q ss_pred EcC--CCCc-cccc--------ccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHH--cCCccEEE--ee
Q 019328 242 LHP--VLDK-TTYH--------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 297 (342)
Q Consensus 242 l~l--plt~-~t~~--------li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~--~g~i~gaa--lD 297 (342)
++. |..+ .++. ++- .+.+....|.+++||++--.-+-...+.+.-. ..++.|.+ ||
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 5433 1111 110 12344456889999986544333444444432 45677666 55
No 218
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.10 E-value=0.0019 Score=61.57 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=74.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
++|+|||.|.+|..+|..++ ..|. +|..+|...........+.+..... ...........++++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 47999999999999999874 4443 8999998654322111111110000 000111122357777 78999999998
Q ss_pred CCCcccccc-------cCH-------hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE--ee
Q 019328 245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (342)
Q Consensus 245 plt~~t~~l-------i~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa--lD 297 (342)
+. |...+. .|. +.+....|++++|+++---=+-...+.+. +...++.|.+ ||
T Consensus 78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 73 222221 111 23344457899999987554445555555 5556677776 66
No 219
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.09 E-value=0.0027 Score=60.04 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=51.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChh--hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
++.||++.|+|.|.+|++++..| ...|++ |..++|+.. .+.++..+.+..................++++.++.+|
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 46789999999999999999997 478986 999999852 22222222111000000000000111123455667889
Q ss_pred EEEEcCCCC
Q 019328 239 VISLHPVLD 247 (342)
Q Consensus 239 iV~l~lplt 247 (342)
+|+.+.|..
T Consensus 202 ilINaTp~G 210 (289)
T PRK12548 202 ILVNATLVG 210 (289)
T ss_pred EEEEeCCCC
Confidence 999999854
No 220
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.08 E-value=0.0027 Score=62.62 Aligned_cols=97 Identities=24% Similarity=0.282 Sum_probs=65.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
+|+++++.|||.|.||.-+|+.| ...| .+|++.+|+..+. ......++ ..+....++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA-~~La~~~~----------~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERA-EELAKKLG----------AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHH-HHHHHHhC----------CeeecHHHHHHhhhhCCEE
Confidence 49999999999999999999998 4677 5788999997653 22222222 1223346777889999999
Q ss_pred EEcCCCCcccccccCHhHHccC-C--CCcEEEecCC
Q 019328 241 SLHPVLDKTTYHLINKERLATM-K--KEAILVNCSR 273 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~m-k--~gailIN~sR 273 (342)
+.+.. +...++..+.+... + ++-++|+.+=
T Consensus 243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred EEecC---CCccccCHHHHHHHHhcccCeEEEEecC
Confidence 99954 44555555444332 1 1135666553
No 221
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.05 E-value=0.0034 Score=50.64 Aligned_cols=67 Identities=25% Similarity=0.449 Sum_probs=48.2
Q ss_pred EEEEEccChHHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328 167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l 242 (342)
++||||+|.+|+...+.+.+. -+.++. ++|+++... +.+...++ ...+.+++++++ ..|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~~------------~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKYG------------IPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHTT------------SEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHhc------------ccchhHHHHHHHhhcCCEEEE
Confidence 799999999999998776433 466765 688887542 22222221 224679999998 7899999
Q ss_pred cCCC
Q 019328 243 HPVL 246 (342)
Q Consensus 243 ~lpl 246 (342)
+.|.
T Consensus 69 ~tp~ 72 (120)
T PF01408_consen 69 ATPP 72 (120)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9993
No 222
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.02 E-value=0.0014 Score=62.05 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=35.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~ 204 (342)
.|+.+||+|+|.+|..-.+. ++|||++|+++|+..+++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kkee 220 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKKEE 220 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhHHH
Confidence 79999999999999988887 69999999999998755433
No 223
>PLN02477 glutamate dehydrogenase
Probab=97.01 E-value=0.0052 Score=60.80 Aligned_cols=118 Identities=26% Similarity=0.325 Sum_probs=73.5
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCC----------hhhHHHHHHhhhhhhhccCCCCCccccccC
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (342)
|.++.|+||.|.|+|++|+.+|+.| ...|++|++ .|.+ ... ..++....+. +. ... +... .
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g~-l~--~~~--~a~~-i 272 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGGG-LK--GFP--GGDP-I 272 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcCc-hh--ccc--cceE-e
Confidence 3479999999999999999999997 689999994 4544 111 1111111110 00 000 0111 1
Q ss_pred CHHH-HhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328 229 SMDE-VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 229 ~l~e-ll~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 293 (342)
+.++ +...||+++-|- ..+.|+++...+++ =.+++--+-+++ .. .-.+.|++..|.-
T Consensus 273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~~ 330 (410)
T PLN02477 273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVVV 330 (410)
T ss_pred cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcEE
Confidence 2233 235789988763 46679998888886 447788888887 33 3447777776543
No 224
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.99 E-value=0.0047 Score=61.68 Aligned_cols=120 Identities=11% Similarity=0.086 Sum_probs=72.4
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cC----------ChhhHHHHHHhhhhhhhcc-CCCCCccccccC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL----------YQATRLEKFVTAYGQFLKA-NGEQPVTWKRAS 228 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 228 (342)
.++.|+||.|.|+|++|+.+|+.| ..+|++|++. |. ... ...++.+.....+.. .... +. ...
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l~~~~~~~--~~-~~i 302 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRISEYAEEF--GA-EYL 302 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCchhhhhhhc--CC-eec
Confidence 479999999999999999999998 6899999987 52 221 111111110000000 0000 00 112
Q ss_pred CHHHHhh-cCCEEEEcCCCCcccccccCHhHHccCC--CCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 229 SMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 229 ~l~ell~-~sDiV~l~lplt~~t~~li~~~~l~~mk--~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
+.++++. .||+++-|.. .+.|+.+....++ +=.+++-.+-|++ . .+-.+.|.++.|.
T Consensus 303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t-~~A~~~L~~rGI~ 362 (445)
T PRK09414 303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-T-PEAIEVFLEAGVL 362 (445)
T ss_pred CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-C-HHHHHHHHHCCcE
Confidence 3444443 6999988865 5668887777763 2347777788887 3 3345667766553
No 225
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.001 Score=64.10 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=47.2
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
++||||||-|..|+.++.. ++.+|.++++.||.++.......+ ... ...+.....+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~--------~~i-~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD--------RVI-VAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc--------cee-ecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999998 589999999999987642211100 000 0001112357889999999975
No 226
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.99 E-value=0.0013 Score=61.19 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=74.8
Q ss_pred EEEEcc-ChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 168 vGIiG~-G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
|+|||. |.+|..+|..++ ..| -++..||.+.+.. ............. . .........++.+.+++||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l-~~~~~dl~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKL-KGVAMDLQDAVEP-L-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccc-hHHHHHHHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999874 445 6899999876432 1111111111111 1 11222334567889999999999
Q ss_pred cCC--CCc-cccc--------ccC--HhHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE-eecCC
Q 019328 243 HPV--LDK-TTYH--------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVFE 300 (342)
Q Consensus 243 ~lp--lt~-~t~~--------li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa-lDV~~ 300 (342)
+.- ..+ .++. ++. .+.+++..|.+++||++---=+-...+.+. +...++.|.+ +|...
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r 150 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIR 150 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence 642 111 1111 110 123444568999999963222333344444 4567899998 87643
No 227
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.94 E-value=0.0022 Score=64.91 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=51.8
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
+.++.|++++|+|.|.+|+.++..+ ...|++|.+++|+..+. +.....++ . ......++.+ +..+|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~~-------~---~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRCQ-------G---KAFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhc-------c---ceechhHhcc-cCCCCE
Confidence 3467899999999999999999998 58899999999986542 22211110 0 0011122222 468999
Q ss_pred EEEcCCCCc
Q 019328 240 ISLHPVLDK 248 (342)
Q Consensus 240 V~l~lplt~ 248 (342)
|++|+|...
T Consensus 394 VInatP~g~ 402 (477)
T PRK09310 394 IINCLPPSV 402 (477)
T ss_pred EEEcCCCCC
Confidence 999999654
No 228
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.85 E-value=0.0061 Score=56.49 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=72.6
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCCh-----h----hHHH---HHHhhhhhhhccCCCCCc-cccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ-----A----TRLE---KFVTAYGQFLKANGEQPV-TWKR 226 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~-----~----~~~~---~~~~~~~~~~~~~~~~~~-~~~~ 226 (342)
.++.|+||.|-|||++|+.+|+.| ..+|++|++. |.+- + +... +..+..+..+..- .... +...
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~-~~~~~~a~~ 111 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEY-AKKYGTAKY 111 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHH-hhcCCCCEE
Confidence 479999999999999999999998 6899999944 3110 0 0010 0000000000000 0000 0111
Q ss_pred cCCHHHH-hhcCCEEEEcCCCCcccccccCHhHHccCC--CCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 227 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 227 ~~~l~el-l~~sDiV~l~lplt~~t~~li~~~~l~~mk--~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
.+.+++ -..||+++-| .+.+.|+++...+++ +=.+++-.+-|++-+ +-.+.|.++.|.
T Consensus 112 -~~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 112 -FEGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred -eCCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 233333 3579999877 467889999888884 345777777888754 344667766553
No 229
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.79 E-value=0.0081 Score=55.46 Aligned_cols=124 Identities=21% Similarity=0.283 Sum_probs=72.9
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE--------cCChhh--HHHHHHhhhhh-hhccCCCCCccccccCCH
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQ-FLKANGEQPVTWKRASSM 230 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~--------d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 230 (342)
++.|+++.|-|+|++|+.+|+.| ...|++|++. |+..-. ......+..+. ........+-... ..+-
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 106 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAE-YIPN 106 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSE-EECH
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccccccccccccee-Eecc
Confidence 69999999999999999999998 6889998876 554321 11111112111 0000000000001 1123
Q ss_pred H-HHh-hcCCEEEEcCCCCcccccccCHhHHc-cCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEE
Q 019328 231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRV 294 (342)
Q Consensus 231 ~-ell-~~sDiV~l~lplt~~t~~li~~~~l~-~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~ga 294 (342)
+ +++ ..||+++.|- ..+.|+++... .+++|+-+| --+.+.+- .++.. .|++..|.-+
T Consensus 107 ~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~vi 167 (244)
T PF00208_consen 107 DDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGILVI 167 (244)
T ss_dssp HCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-EEE
T ss_pred ccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCEEE
Confidence 2 455 6899999883 45678888888 787665554 55566654 55554 7777765433
No 230
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0039 Score=61.12 Aligned_cols=101 Identities=17% Similarity=0.088 Sum_probs=66.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+++-|||.|.||+.+|+.|+ .-| .+|+..||+..+.... .+..+.-+ ....+.......+.+++++.|+|+.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~~~v---~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIGGKV---EALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhccccc---eeEEecccChHHHHHHHhcCCEEEEeC
Confidence 68999999999999999985 455 8999999997653221 11100000 001111222346889999999999999
Q ss_pred CCCcccccccCHhHH-ccCCCCcEEEecCCCccC
Q 019328 245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 245 plt~~t~~li~~~~l-~~mk~gailIN~sRG~~v 277 (342)
|..- +...+ +.++-|.-.+++|-.+..
T Consensus 77 p~~~------~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 77 PPFV------DLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred Cchh------hHHHHHHHHHhCCCEEEcccCCch
Confidence 9432 22333 456778888888766544
No 231
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.75 E-value=0.0015 Score=58.90 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=96.4
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc-----CCCCCcc-----------cc
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----NGEQPVT-----------WK 225 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~~ 225 (342)
...-+.|+|||.|.||..+|+.. ...|..|+.+|++.+....+. +.....++. ....+.. ..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A~-~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRAT-KAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHHH-HHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 44557899999999999999986 588999999999876432221 111111110 0111110 01
Q ss_pred ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (342)
Q Consensus 226 ~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 304 (342)
...++.++++.+|+|+=++--+-+.+.-+-++.=...|+.++|+ |+|. +....+..+++.. -..+||-.|.+-|
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP- 160 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP- 160 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch-
Confidence 23466777788888876665555444444444445568887775 4443 4456777887754 5677888887655
Q ss_pred CCCCccCCCceEEcCCCCCCcHHHH
Q 019328 305 MKPGLSEMKNAIVVPHIASASKWTR 329 (342)
Q Consensus 305 ~~~~L~~~~nvi~TPHia~~t~~~~ 329 (342)
...+=.||=|+..+-.|..+.
T Consensus 161 ----vMKLvEVir~~~TS~eTf~~l 181 (298)
T KOG2304|consen 161 ----VMKLVEVIRTDDTSDETFNAL 181 (298)
T ss_pred ----hHHHhhhhcCCCCCHHHHHHH
Confidence 344445777777654444443
No 232
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.73 E-value=0.0062 Score=56.88 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=59.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
.+|||||+|.||+.+++.+.+.-++++. ++++........ ..+ ..+.....+++++-...|+|+.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--~~~----------~~~~~~~~d~~~l~~~~DvVve~t 69 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--RAL----------GEAVRVVSSVDALPQRPDLVVECA 69 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--hhh----------ccCCeeeCCHHHhccCCCEEEECC
Confidence 4899999999999999987432245543 333332211000 000 001223467888755689999999
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccCCH---HHHHHHHHcCC
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~---~aL~~aL~~g~ 290 (342)
|... .. +-....++.|.-++-.+-|.+.|. +.|.++.+++.
T Consensus 70 ~~~~--~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 70 GHAA--LK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred CHHH--HH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence 8332 21 223333445555555555555543 34555555543
No 233
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.72 E-value=0.0041 Score=53.47 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=35.7
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
.-+|.|++|.|||-|.+|...++.| ...|++|.++++...+
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~ 48 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK 48 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence 3589999999999999999999997 5899999999876543
No 234
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.72 E-value=0.0062 Score=50.13 Aligned_cols=111 Identities=25% Similarity=0.355 Sum_probs=60.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+|+|+|+ |+||+.+++.+...-++++. ++++..++.... ..+.. .+....+.....++++++..+|+++-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~~---~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGEL---AGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHHH---CTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhhh---hCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 99999999997545788855 667765221000 01100 1112334445689999999999988775
Q ss_pred CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
+|+.-.-.-+.. ++.|.-+|--..|---++.+.++.+.+
T Consensus 76 --~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 76 --NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp ---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred --ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 343222111222 234666666556664344344444443
No 235
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.015 Score=56.62 Aligned_cols=127 Identities=18% Similarity=0.267 Sum_probs=93.6
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV~l 242 (342)
..+|+||+|.||+.+|..+ ..-|.+|.+|+|+..+. ++|..+ .... .......+++|++ +.=--|.+
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence 4699999999999999997 47899999999998764 333332 1111 1122345777764 55566777
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 303 (342)
.+-...- ..-+=++.+..|.+|=++|+-+...--|+..-.++|.+..|...+.-|.-.|-
T Consensus 74 MVkAG~~-VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe 133 (473)
T COG0362 74 MVKAGTP-VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE 133 (473)
T ss_pred EEecCCc-HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence 7654311 11122567888999999999999999999999999999999999999988876
No 236
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.68 E-value=0.0047 Score=50.40 Aligned_cols=95 Identities=11% Similarity=0.115 Sum_probs=52.8
Q ss_pred EEEEEc-cChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEEE
Q 019328 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvGIiG-~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~l 242 (342)
++||+| .|.+|+.+++.+...=+.++.+. +++.... ......+. ..... ......+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG-KRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC-cCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence 589999 59999999998743236777665 4332110 01000000 00000 000112232 258999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
|+|... +...+. .....+++|.++|++|
T Consensus 72 ~~~~~~-~~~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 72 ALPHGV-SKEIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred cCCcHH-HHHHHH-HHHhhhcCCCEEEECC
Confidence 999553 333221 2345679999999997
No 237
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.66 E-value=0.005 Score=55.53 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=66.8
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
-+|.||+|.|||-|..|..=++.+ ...|++|+++++...++...+.+. .. ..+.. .....+++. .+++|
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~-------~~-i~~~~-~~~~~~~~~-~~~lv 76 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE-------GK-IKWIE-REFDAEDLD-DAFLV 76 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh-------cC-cchhh-cccChhhhc-CceEE
Confidence 479999999999999999999998 589999999999875444333221 11 11111 122344444 49999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.+++..+ +|+..++..++-.+++|+.
T Consensus 77 iaAt~d~~-----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 77 IAATDDEE-----LNERIAKAARERRILVNVV 103 (210)
T ss_pred EEeCCCHH-----HHHHHHHHHHHhCCceecc
Confidence 99988554 6666777777767777763
No 238
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.66 E-value=0.0053 Score=54.93 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=60.6
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh------------------HHHHHHhhhhhhhccCCCCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-. ..+...+..... .....
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~v~ 92 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL---NSDIQ 92 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh---CCCCE
Confidence 4699999999999999999999984 6786 78899876210 000000000000 00000
Q ss_pred ccc----cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCC
Q 019328 222 VTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (342)
Q Consensus 222 ~~~----~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk 263 (342)
... ....+++++++++|+|+.|+. +.+++.++++...+..+
T Consensus 93 i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 93 VTALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT 137 (202)
T ss_pred EEEehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 000 011245678899999998875 56778888776655444
No 239
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.63 E-value=0.012 Score=58.68 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=69.8
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhccCCCCCc----ccc
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV----TWK 225 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (342)
|.+|.|+||.|.|+|++|...|+.| ..+|++|++.+.+.. .... +...+.... ....... +.
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~-~~~v~~~~~~~ga- 298 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLY-RGRIREYAEKYGC- 298 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhc-CCchhhhHhhcCC-
Confidence 4579999999999999999999998 689999998544110 0000 000000000 0000000 11
Q ss_pred ccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCC-Cc-EEEecCCCccCCHHHHHHHHHcC
Q 019328 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 226 ~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~-ga-ilIN~sRG~~vd~~aL~~aL~~g 289 (342)
...+.++++ ..|||++-| .+.+.|+++...+++. |. +++--+.| +...++.....+.|
T Consensus 299 ~~i~~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 299 KYVEGARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred EEcCCcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 112334443 468988766 4678899999888865 44 44445566 66666554444433
No 240
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.59 E-value=0.011 Score=54.92 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=45.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+|+|+|+ |.||+.+++.+...-++++.+ +|+.+..... . ...+...+.+++++++.+|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence 47999998 999999999864334688664 7776543110 0 111222357899999899999988
Q ss_pred CC
Q 019328 244 PV 245 (342)
Q Consensus 244 lp 245 (342)
.|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 76
No 241
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.59 E-value=0.01 Score=54.80 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=60.1
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
.++-|+|-|.+++.+|+.+ +.+|++|.++|+++.... . .-...++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~-------------------------~--~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFP-------------------------E--DLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCccccc-------------------------c--cCCCCceEEecCCH
Confidence 3799999999999999985 899999999998653100 0 00123332222222
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 291 (342)
.+.+..+.+++++|=+.++.-.|.+.|..+|.+...
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 233344567788888889999999999999954444
No 242
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.56 E-value=0.033 Score=47.92 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCCEEEEEc--cChHHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 164 ~gktvGIiG--~G~IG~~vA~~l~~a~g~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.|+||++|| .+++.++++..+ ..||+++....|..- +......+.........+ .......++++.++++|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 489999999 389999999987 689999999988752 121122211111111111 112334799999999999
Q ss_pred EEEcCCCC----cc-------cccccCHhHHccCCCCcEEEecC
Q 019328 240 ISLHPVLD----KT-------TYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 240 V~l~lplt----~~-------t~~li~~~~l~~mk~gailIN~s 272 (342)
|..-.--. +. ..-.++++.++.+|++++|.-+.
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 98775531 10 11346889999999999998774
No 243
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.56 E-value=0.0056 Score=59.21 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=59.7
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh--------------------hHHHHHHhhhhhhhccC-C
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------------TRLEKFVTAYGQFLKAN-G 218 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~--------------------~~~~~~~~~~~~~~~~~-~ 218 (342)
..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..- +..+...+. ++.- .
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~----l~~inp 94 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH----LRKINS 94 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH----HHHHCC
Confidence 4699999999999999999999985 6786 7888888641 000000000 0000 0
Q ss_pred CCCcccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328 219 EQPVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 219 ~~~~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~ 260 (342)
....... ...+++++++++|+|+.+.. +.+++.++|.-..+
T Consensus 95 ~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~~ 139 (338)
T PRK12475 95 EVEIVPVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQK 139 (338)
T ss_pred CcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 0000000 11357888999999999984 67788777765544
No 244
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.56 E-value=0.036 Score=53.11 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCChhh------HHHHHHhhhh---hhhccCCCCC-------c-cccccC--CHHHHhhc
Q 019328 176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEKFVTAYG---QFLKANGEQP-------V-TWKRAS--SMDEVLRE 236 (342)
Q Consensus 176 IG~~vA~~l~~a~g~~V~~~d~~~~~------~~~~~~~~~~---~~~~~~~~~~-------~-~~~~~~--~l~ell~~ 236 (342)
||..+|..++ ..|.+|..||+++.. ..+....... ......+... . ...... ++.+.+++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence 6889999875 669999999998732 0111000000 0001111100 0 011112 25688899
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 287 (342)
||+|+-++|-+.+.+.-+-.+..+.++|+++| +|.-+.+....|.+.++
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 99999999999999998888888899999999 44555566777888775
No 245
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.52 E-value=0.011 Score=48.05 Aligned_cols=101 Identities=13% Similarity=0.188 Sum_probs=64.0
Q ss_pred CEEEEEc----cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvGIiG----~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
|+++||| -|..|..+.+.| +..|.+|+..+|....- .+...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence 6899999 799999999998 57999999999875421 12234678888558899999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 293 (342)
+++|- +.+..++. .+..+..+.+++..+ ..++++.+.+++..+.-
T Consensus 61 v~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 61 VCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp E-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred EEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence 99992 22333332 233346778888887 66777888877766543
No 246
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.50 E-value=0.35 Score=46.66 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=63.7
Q ss_pred ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+.|+||++||-+ ++.++++..+ ..||++|....|..-...+.+.+......+..+ .......+++++++++|+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv 227 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV 227 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999997 7888888886 689999998887532111111111000001111 122335789999999999
Q ss_pred EEEcCCCC--c-----c-----cccccCHhHHc-cCCCCcEEEec
Q 019328 240 ISLHPVLD--K-----T-----TYHLINKERLA-TMKKEAILVNC 271 (342)
Q Consensus 240 V~l~lplt--~-----~-----t~~li~~~~l~-~mk~gailIN~ 271 (342)
|..-+-.. . + ..--++++.++ .+|+++++.-+
T Consensus 228 vyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred EEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 98853210 0 0 01234666676 46777776644
No 247
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.48 E-value=0.016 Score=46.28 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255 (342)
Q Consensus 176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~ 255 (342)
-+..+++.| +..|++|.+|||.......... + . ..+.....++++.++.+|.|+++.+- ++-+.+--
T Consensus 18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~---~---~-----~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEEL-KERGAEVSVYDPYVDEEEIKEL---G---K-----LEGVEVCDDLEEALKGADAVVLATDH-DEFRELDW 84 (106)
T ss_dssp HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH---C---H-----HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred HHHHHHHHH-HHCCCEEEEECCccChHHHHhh---C---C-----ccceEEecCHHHHhcCCCEEEEEecC-HHHhccCH
Confidence 356788887 6889999999999765322110 0 0 01123346899999999999999983 34444333
Q ss_pred HhHHccCCCCcEEEec
Q 019328 256 KERLATMKKEAILVNC 271 (342)
Q Consensus 256 ~~~l~~mk~gailIN~ 271 (342)
.+..+.|+++.++|++
T Consensus 85 ~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHSCSSEEEEES
T ss_pred HHHHHhcCCCCEEEEC
Confidence 4556778899999987
No 248
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.0088 Score=60.17 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=69.4
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
-+.+++|+|+|+|..|+++|+.| +..|++|.++|.+........... ++..+ ..........+.+..+|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~~----l~~~g---i~~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSNE----LKELG---VKLVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHHH----HHhCC---CEEEeCCCChHHhccCCEEE
Confidence 46689999999999999999997 699999999998753211110000 11111 11111122235557899998
Q ss_pred EcCCCCccccc-----------ccCH-hHH-ccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 242 LHPVLDKTTYH-----------LINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 242 l~lplt~~t~~-----------li~~-~~l-~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
.. |.-+.+.- ++++ +.+ +..+...+-|-=+.|..--..-|...|+..
T Consensus 83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 87 43332222 1222 122 222334455655678877777777777753
No 249
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.44 E-value=0.02 Score=57.08 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=73.3
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEE--------EcCChhh--H---HHHHHhhhhhhhccC-CCCCcccc
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLKAN-GEQPVTWK 225 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~ 225 (342)
|.+|.|+||.|=|+|++|+..|+.| ..+|++|++ ||+.--. . ..++.+..+...... ...+ +..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~ 300 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GST 300 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCE
Confidence 3479999999999999999999998 689999999 7855211 1 111111111000000 0000 111
Q ss_pred ccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCC--CCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 226 ~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk--~gailIN~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
. .+.++++ ..||+.+-| .+.+.|+.+...++. +=.+++--+-| ++..+|- +.|.+..|.
T Consensus 301 ~-i~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~ 362 (445)
T PRK14030 301 F-FAGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL 362 (445)
T ss_pred E-cCCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence 1 1233333 458888766 467889998888873 23466677777 5555543 666666553
No 250
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.41 E-value=0.018 Score=55.80 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=45.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhh--hhhccC--C--CCCccccccCCHHHHhhcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG--QFLKAN--G--EQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~--~~~~~~--~--~~~~~~~~~~~l~ell~~sD 238 (342)
.+|||+|+|+||+.+++.+...-++++.+. |+.+. ........++ ...... . ....+.....++++++..+|
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~-~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPD-YEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChH-HHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 379999999999999998744457887765 44432 1111111011 000000 0 00011222356888888999
Q ss_pred EEEEcCCC
Q 019328 239 VISLHPVL 246 (342)
Q Consensus 239 iV~l~lpl 246 (342)
+|+.|.|.
T Consensus 81 VVIdaT~~ 88 (341)
T PRK04207 81 IVVDATPG 88 (341)
T ss_pred EEEECCCc
Confidence 99999873
No 251
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.39 E-value=0.019 Score=54.61 Aligned_cols=126 Identities=12% Similarity=0.267 Sum_probs=66.0
Q ss_pred CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
++|+|||.|.+|..+|..++. +++ +|..+|++.........+ ......... .........+.+ .++.||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~d-l~~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALD-IAEAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHH-HHhhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 589999999999999998752 234 999999976532111111 100000000 011111224564 479999999985
Q ss_pred --CCCcc-c--------ccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE
Q 019328 245 --VLDKT-T--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG 295 (342)
Q Consensus 245 --plt~~-t--------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa 295 (342)
|..+. + ..++. .+.+....|.+++|+++--.=+-...+.+. +...++.|.+
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 32221 1 01110 112333346778888864433333344432 2224677765
No 252
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.36 E-value=0.012 Score=56.21 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=69.8
Q ss_pred CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCC-ccccccCCHHHHhhcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~ell~~sDiV~l 242 (342)
.+|+|||.|.+|..+|-.|+ ++..-++..||.+.+..... .... .+.. ... .......+.++ ++.||+|++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~-a~Dl----~~~~~~~~~~~v~~~~dy~~-~~~adivvi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGE-AMDL----QHGSAFLKNPKIEADKDYSV-TANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHH-HHHH----HHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence 48999999999999998764 34445899999876432111 1111 1111 000 11122245665 799999999
Q ss_pred cCC--CCc-ccccc-c--CH-------hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEEe
Q 019328 243 HPV--LDK-TTYHL-I--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVGL 296 (342)
Q Consensus 243 ~lp--lt~-~t~~l-i--~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaal 296 (342)
+.- ..+ +||.- + |. +.+....|.+++|+++---=+-...+.+. +...++.|.+.
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence 633 222 34421 1 11 33444578999999983222222233333 44556676643
No 253
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.32 E-value=0.0044 Score=52.21 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=70.4
Q ss_pred EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCcccc-ccCCHHHHhhcCCEEEEcCC
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV 245 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~sDiV~l~lp 245 (342)
|+|+|.|.||..+|-+|+ ..|.+|..+++.. . .+.. ...+..+.... ....... ...+..+-....|+|++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~-~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP-R-LEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH-H-HHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHH-HCCCceEEEEccc-c-HHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 689999999999999984 6899999999876 2 1221 11121121111 0000001 11112346788999999987
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEE
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaa 295 (342)
.. ++...+.. ....+++++.++-.--| +-.++.|.+.+...++.++.
T Consensus 77 a~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 77 AY-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp GG-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred cc-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 43 34444433 44455677677766555 44566777676555555544
No 254
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.29 E-value=0.016 Score=54.53 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=51.8
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|+++.|||.|.+|+.++..| ...|+ +|..++|+.++. +...+.++.. ..... .....++.+.+.++|+|
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~~~---~~~~~--~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGVQV---GVITR--LEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhhhc---Cccee--ccchhhhhhcccCCCEE
Confidence 46789999999999999999997 57887 699999987542 2222222110 00000 00012344566889999
Q ss_pred EEcCCCC
Q 019328 241 SLHPVLD 247 (342)
Q Consensus 241 ~l~lplt 247 (342)
+.+.|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999964
No 255
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.26 E-value=0.014 Score=56.06 Aligned_cols=129 Identities=15% Similarity=0.207 Sum_probs=70.7
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
+..++|+|||.|.+|..+|..++ ..| .+|..+|.+++.......+.... ..... .........+.+ .++.||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence 45579999999999999999864 445 48999999876421111111110 00000 111122234664 569999999
Q ss_pred EcC--CCCcc--------------cccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHH--cCCccEEE
Q 019328 242 LHP--VLDKT--------------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG 295 (342)
Q Consensus 242 l~l--plt~~--------------t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~--~g~i~gaa 295 (342)
++. |..+. +..++. .+.+....|.+++||++--.=+-...+.+... ..++.|.+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 975 22111 111111 12344445788999998433333444444332 34677776
No 256
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.26 E-value=0.34 Score=46.89 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=63.4
Q ss_pred ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+.|++|++||-+ ++.++++..+ ..||+++.+..|..-...+.+.+......+.. +.......++++.++++|+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~i~~~~d~~ea~~~aDv 228 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKN---GGNITLTEDIAEGVKGADF 228 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCE
Confidence 5789999999976 6889999986 58999999988753211111111100001111 1123345799999999999
Q ss_pred EEEcCCCCcc-------------cccccCHhHHccC-CCCcEEEec
Q 019328 240 ISLHPVLDKT-------------TYHLINKERLATM-KKEAILVNC 271 (342)
Q Consensus 240 V~l~lplt~~-------------t~~li~~~~l~~m-k~gailIN~ 271 (342)
|..-.-.... ..-.++++.++.. |++++|.-+
T Consensus 229 vytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc 274 (336)
T PRK03515 229 IYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC 274 (336)
T ss_pred EEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC
Confidence 9885321110 0122455666663 666666554
No 257
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.23 E-value=0.019 Score=57.30 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=71.0
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++.+|++.|+|.|.+|..+|+.| ...|++|.++|+..........+. +...+ .........++....+|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELG---IELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcC---CEEEeCCcchhHhhcCCEEE
Confidence 46899999999999999999998 589999999999753322211111 11111 11111223345677899999
Q ss_pred EcCCCCcccccc----------cC-HhHHcc-CCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 242 LHPVLDKTTYHL----------IN-KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~lplt~~t~~l----------i~-~~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
.+.-..+...-+ +. .+.+.. .+...+-|-=+.|..--..-|...|+.
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 875433332211 11 112222 232344444467888777777788865
No 258
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.21 E-value=0.095 Score=49.97 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=64.3
Q ss_pred cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
+.|.||+++|= +++-++.+..+ ..||++|....|..-...+...+......... +.......++++.+++||+|.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDvvy 221 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKEN---GGSVELTHDPVEAVKGADVIY 221 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCEEE
Confidence 78999999997 68888888886 68999999988753211111111100000111 112334579999999999998
Q ss_pred EcCCC--Cc-----c-----cccccCHhHHccCCCCcEEEec
Q 019328 242 LHPVL--DK-----T-----TYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 242 l~lpl--t~-----~-----t~~li~~~~l~~mk~gailIN~ 271 (342)
.-.-. .. + ..-.++++.++.+|+++++.-+
T Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 74311 10 0 1124577777777777777654
No 259
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.014 Score=58.04 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=63.3
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
.++|.|||+|.+|.++|+.| +..|.+|.++|++....... .+ . .. ......+.+..++|+++.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~---~~---~------~~--~~~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC---PY---I------HE--RYLENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh---HH---H------hh--hhcCCcHHHhcCCCEEEECC
Confidence 46899999999999999997 68999999999875421100 00 0 00 00123344557799988887
Q ss_pred CCCccccc-----------ccCHhH--Hcc--C-CCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 245 VLDKTTYH-----------LINKER--LAT--M-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 plt~~t~~-----------li~~~~--l~~--m-k~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
+..+. .. ++.+.. +.. + +...+=|-=+-|..=-..-|...|+.
T Consensus 68 gi~~~-~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 68 GIKKE-HPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCCC-cHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 65432 21 222211 111 2 11234444456776666667777765
No 260
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.17 E-value=0.015 Score=58.51 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=61.5
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
-+|.|++|.|||-|.++..=++.| ..+|++|.++.|...+....+.. .+. ..+....--++.+..+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence 489999999999999999988887 57999999999876554333211 111 1111111123456889998
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.+....+ +|++..+..+...+++|++
T Consensus 77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 77 IAATDDDA-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence 88877544 4444444444444555543
No 261
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.10 E-value=1.2 Score=43.02 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=64.8
Q ss_pred ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+.|++|++||-+ ++.++.+..+ ..||++|.+..|..-...+.+.+......+..+ .......++++.++.+|+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF 228 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999976 7889998886 589999998887531111111111100011111 123345789999999999
Q ss_pred EEEcCCCC----c----c-----cccccCHhHHccC-CCCcEEEec
Q 019328 240 ISLHPVLD----K----T-----TYHLINKERLATM-KKEAILVNC 271 (342)
Q Consensus 240 V~l~lplt----~----~-----t~~li~~~~l~~m-k~gailIN~ 271 (342)
|..-.-.. . + -.--++++.++.. |++++|.-+
T Consensus 229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 98864210 0 0 0123467777774 677777765
No 262
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.09 E-value=0.0088 Score=58.66 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=44.9
Q ss_pred EEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCC--CccccccCCHHHHhhcCCEEEEcC
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
|+|+|.|.+|+.+++.|++.... +|.+.||+.++.. ...+.. ...... ........+++++++++|+|+.|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 68999999999999998655556 8999999986522 111100 000000 001111234788999999999999
Q ss_pred C
Q 019328 245 V 245 (342)
Q Consensus 245 p 245 (342)
|
T Consensus 76 g 76 (386)
T PF03435_consen 76 G 76 (386)
T ss_dssp S
T ss_pred c
Confidence 8
No 263
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.06 E-value=0.11 Score=50.23 Aligned_cols=106 Identities=11% Similarity=0.127 Sum_probs=64.8
Q ss_pred ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+.|++|++||=+ ++.++.+..+ ..||++|.+..|..-...+...+......+. .+.......++++.+++||+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~---~g~~~~~~~d~~~a~~~aDv 228 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKE---SGARITVTDDIDKAVKGVDF 228 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHH---cCCeEEEEcCHHHHhCCCCE
Confidence 4789999999986 5788888876 5899999998875321111111000000011 11123345799999999999
Q ss_pred EEEcC----CCCcc---c------ccccCHhHHccC-CCCcEEEec
Q 019328 240 ISLHP----VLDKT---T------YHLINKERLATM-KKEAILVNC 271 (342)
Q Consensus 240 V~l~l----plt~~---t------~~li~~~~l~~m-k~gailIN~ 271 (342)
|..-. ....+ . .-.++++.++.. |++++|.-+
T Consensus 229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~ 274 (334)
T PRK01713 229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC 274 (334)
T ss_pred EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence 98742 11000 1 122577788875 788888765
No 264
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.05 E-value=0.16 Score=49.41 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=48.5
Q ss_pred ccCCCEEEEEccC--------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (342)
Q Consensus 162 ~l~gktvGIiG~G--------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (342)
.+.|+||+|+|.| ++.++++..+ ..||++|....|..-...+...+......+.. +.......++++.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~---g~~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAEN---GGKFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence 4789999999854 3446777776 58999999998763211111111000001111 1123345799999
Q ss_pred hhcCCEEEEcC
Q 019328 234 LREADVISLHP 244 (342)
Q Consensus 234 l~~sDiV~l~l 244 (342)
++++|+|..-.
T Consensus 243 ~~~aDvvyt~~ 253 (357)
T TIGR03316 243 FKDADIVYPKS 253 (357)
T ss_pred hCCCCEEEECC
Confidence 99999998763
No 265
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.02 E-value=0.017 Score=52.63 Aligned_cols=107 Identities=22% Similarity=0.203 Sum_probs=63.0
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH--H-hhhh--------hhhccCC-CCCccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF--V-TAYG--------QFLKANG-EQPVTW 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~---~~--~-~~~~--------~~~~~~~-~~~~~~ 224 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-.... .+ . +..+ ..++.-. ...+..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999985 6676 67778765311000 00 0 0000 0000000 000000
Q ss_pred c----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 225 ~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
. ...+++++++++|+|+.|+. +++++.++++...+. +.-+|..+
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 0 11345678899999999987 667887777665543 45566654
No 266
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.01 E-value=0.26 Score=46.28 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=95.8
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcC----Cc-------EEEEEcCChh-----hHHHHHHhhhhhhhccCCCCCcc
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVT 223 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~----g~-------~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 223 (342)
|..|...++.|+|.|.-|-.+|+.|. .. |+ +++.+|+.-- .....+...| .+....
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~---a~~~~~---- 91 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPF---ARKDEE---- 91 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHH---HhhcCc----
Confidence 45788999999999999999999874 44 66 7999997721 1111222222 111110
Q ss_pred ccccCCHHHHhh--cCCEEEEcCCCCcccccccCHhHHccCC---CCcEEEecCCCccCCHHHHHHHHH--cCC-ccEEE
Q 019328 224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK--QNP-MFRVG 295 (342)
Q Consensus 224 ~~~~~~l~ell~--~sDiV~l~lplt~~t~~li~~~~l~~mk---~gailIN~sRG~~vd~~aL~~aL~--~g~-i~gaa 295 (342)
....+|.|+++ +.|+++=+- ..-++|+++.++.|. +.+++.=.|+-...-|-.-.+|.+ +|+ |.+.|
T Consensus 92 -~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG 166 (279)
T cd05312 92 -KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG 166 (279)
T ss_pred -ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC
Confidence 12368999999 889987642 124789999999998 899999999876643433333333 244 66655
Q ss_pred eecCCCCCCC-CCCccCCCceEEcCCCCC
Q 019328 296 LDVFEDEPYM-KPGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 296 lDV~~~EP~~-~~~L~~~~nvi~TPHia~ 323 (342)
.-.-+.+..- ...--+..|+++-|-++-
T Consensus 167 sPf~pv~~~Gr~~~p~Q~NN~~iFPGigl 195 (279)
T cd05312 167 SPFPPVEYNGKTYVPGQGNNAYIFPGIGL 195 (279)
T ss_pred CCCCCeeeCCeEecCCCcceeeeccchhh
Confidence 3211111110 113456789999998874
No 267
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.98 E-value=0.06 Score=52.65 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=97.9
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh--------hhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
++|.|+|.|=.|...+-.+ ..+|.+|+.+|..+++- +.... +..+.++.....+ ......+.++.++.+
T Consensus 1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV-~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKV-ELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHH-HHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcC
Confidence 4799999999999999998 58999999999886542 11100 1111222211111 012346788899999
Q ss_pred CEEEEcCCCCcccccccC--------HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee-cCCCCCCCC-C
Q 019328 238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDEPYMK-P 307 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~--------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD-V~~~EP~~~-~ 307 (342)
|++++++|..+.-.+-+| ++..+.++..+++|+=|+-.+=-.+.+.+-+.+..-.. -++ ++.+|-+.+ +
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~ 156 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGS 156 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcc
Confidence 999999996555455444 34556677779999999988776776666655543222 233 234444432 1
Q ss_pred ---CccCCCceEEcCCCCCCcHHHHHHHHH
Q 019328 308 ---GLSEMKNAIVVPHIASASKWTREGMAT 334 (342)
Q Consensus 308 ---~L~~~~nvi~TPHia~~t~~~~~~~~~ 334 (342)
..+.-+++++ |..+..+.+.|.+
T Consensus 157 Av~D~~~PdRIVi----G~~~~~a~~~~~e 182 (414)
T COG1004 157 AVYDFLYPDRIVI----GVRSERAAAVLRE 182 (414)
T ss_pred hhhhccCCCeEEE----ccCChhHHHHHHH
Confidence 2444456664 4444444444443
No 268
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.98 E-value=0.01 Score=58.03 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
.++|||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 47999999999999999985 7899999999988643
No 269
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.96 E-value=0.024 Score=54.26 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=58.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCC-CccccccCCHHHHhhcCCEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~sDiV 240 (342)
.+++|+|||.|.+|..+|-.| ...|. ++..+|.+..... ...... .+.... ........+. +.+++||+|
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~-g~~~Dl----~~~~~~~~~~~i~~~~~-~~~~~adiv 77 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAE-GDAMDL----SHAVPFTSPTKIYAGDY-SDCKDADLV 77 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhH-HHHHHH----HhhccccCCeEEEeCCH-HHhCCCCEE
Confidence 467999999999999999987 45565 8999998765321 111111 111100 0001112344 457999999
Q ss_pred EEcC--CCCc-ccccc-c--C-------HhHHccCCCCcEEEecC
Q 019328 241 SLHP--VLDK-TTYHL-I--N-------KERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~l--plt~-~t~~l-i--~-------~~~l~~mk~gailIN~s 272 (342)
+++. |..| ++|.- + | .+.+..-.|.+++|+++
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9874 3322 23311 1 1 12233344788999987
No 270
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.015 Score=53.03 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=49.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~l~l 244 (342)
+++.|+|+|..|..+|+.| ...|..|+..|+++....+...+.+.... ... ......-|.++ +.++|+++.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~----v~g-d~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHV----VIG-DATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEE----EEe-cCCCHHHHHhcCCCcCCEEEEee
Confidence 5799999999999999998 69999999999987653221111111000 000 00112234555 68899999998
Q ss_pred CCCc
Q 019328 245 VLDK 248 (342)
Q Consensus 245 plt~ 248 (342)
..+.
T Consensus 75 ~~d~ 78 (225)
T COG0569 75 GNDE 78 (225)
T ss_pred CCCH
Confidence 8544
No 271
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.95 E-value=0.018 Score=63.06 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=47.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-------------EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
..|+|+|||.|.||+..|+.|++.-+.+ |.+.|++.... +...+.+ .+...... .+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS 639 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence 4789999999999999999985443444 88899987542 2222111 01000111 12344
Q ss_pred HH---HhhcCCEEEEcCCC
Q 019328 231 DE---VLREADVISLHPVL 246 (342)
Q Consensus 231 ~e---ll~~sDiV~l~lpl 246 (342)
++ +++++|+|++++|.
T Consensus 640 e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCCCEEEECCCc
Confidence 44 44689999999994
No 272
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.93 E-value=0.071 Score=50.63 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.|++++|||-=.=-..++++| .+.|++|+.+.-.... | ...+.....+.++++++||+|++-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~---------~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H---------GFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c---------ccCCceeeccHHHHhccCCEEEEC
Confidence 478999999988888999998 6889998865321110 0 011223345678899999999999
Q ss_pred CCCCcccc---c-------ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328 244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 244 lplt~~t~---~-------li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 293 (342)
+|.+.+.. . -++.+.+++|++|..++ ++.+. .. +-+.+++.++..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence 88754431 1 13578999999998544 34433 22 335555666654
No 273
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.92 E-value=0.2 Score=46.36 Aligned_cols=152 Identities=12% Similarity=0.093 Sum_probs=95.2
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCc-----------EEEEEcCChh---hH--HHHHHhhhhhhhccCCCCCcc
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------NLIYYDLYQA---TR--LEKFVTAYGQFLKANGEQPVT 223 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-----------~V~~~d~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 223 (342)
|+.|...++.|+|.|.-|-.+|+.|. ..++ +++.+|+.-- .+ ...+...+..+.+.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~------- 91 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP------- 91 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc-------
Confidence 35788999999999999999999874 4444 6888887620 00 11111111001111
Q ss_pred ccccCCHHHHhh--cCCEEEEcCCCCcccccccCHhHHccCC---CCcEEEecCCCccC---CHHHHHHHHHcCCccEEE
Q 019328 224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVI---DEVALVEHLKQNPMFRVG 295 (342)
Q Consensus 224 ~~~~~~l~ell~--~sDiV~l~lplt~~t~~li~~~~l~~mk---~gailIN~sRG~~v---d~~aL~~aL~~g~i~gaa 295 (342)
.....+|.|+++ +.|+++=.- ..-++|.++.++.|. +.+++.=.|+-..- ..++.+++=+...|.+.|
T Consensus 92 ~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG 167 (254)
T cd00762 92 ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG 167 (254)
T ss_pred ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC
Confidence 012358999999 999987642 225799999999999 89999999887763 334444443333455554
Q ss_pred eecCCCCCCCC-CCccCCCceEEcCCCCC
Q 019328 296 LDVFEDEPYMK-PGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 296 lDV~~~EP~~~-~~L~~~~nvi~TPHia~ 323 (342)
--.+.++-.-. -..-+..|+++-|-++-
T Consensus 168 spf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 168 SPFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred CCCCCcccCCceeecccccceeeccchhh
Confidence 42222222100 13447789999998874
No 274
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.92 E-value=0.022 Score=54.05 Aligned_cols=124 Identities=12% Similarity=0.218 Sum_probs=63.6
Q ss_pred EEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC-
Q 019328 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV- 245 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp- 245 (342)
|+|||.|.+|..+|..++. +++ +|+.+|++++.. ............... .........+.+ .++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~-~~~~I~~t~d~~-~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILG-SDTKVTGTNDYE-DIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcC-CCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence 6899999999999998642 334 999999986532 111110000000000 011112224555 4799999999863
Q ss_pred -CCcc-c--------ccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHH--HcCCccEEE
Q 019328 246 -LDKT-T--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG 295 (342)
Q Consensus 246 -lt~~-t--------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL--~~g~i~gaa 295 (342)
..+. + ..++. .+.+....|.+++|+++--.-+-...+.+.. ...++.|.+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 2211 1 11110 1233444577888888733323333333332 223566666
No 275
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.90 E-value=0.072 Score=53.25 Aligned_cols=123 Identities=19% Similarity=0.169 Sum_probs=68.5
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCCh---------hhHH---HHHHhhh-hhhhccCCCCCcccc
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRL---EKFVTAY-GQFLKANGEQPVTWK 225 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~---------~~~~---~~~~~~~-~~~~~~~~~~~~~~~ 225 (342)
+.++.|+||.|=|+|++|+..|+.| ..+|++|+ +.|.+- .... .+..... +....... ...+..
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~-~~~~a~ 309 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAK-HSSTAK 309 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhh-ccCCcE
Confidence 3579999999999999999999997 68999999 445440 1111 0000000 00000000 000111
Q ss_pred ccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccC-CCCcEEE-ecCCCccCCHHHHHHHHHcCCcc
Q 019328 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAILV-NCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 226 ~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~m-k~gailI-N~sRG~~vd~~aL~~aL~~g~i~ 292 (342)
. .+.++++ -.||+.+-| .+.+.|+.+..+.+ +.++.+| --+-+++- .+ -.+.|++..|.
T Consensus 310 ~-~~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t-~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 310 Y-VPGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTT-IE-ATHLFKKNGVI 371 (454)
T ss_pred E-eCCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCC-HH-HHHHHHHCCcE
Confidence 1 1222322 468988776 46788988887766 4455554 44556553 33 33556665543
No 276
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.86 E-value=0.027 Score=51.25 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=59.4
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
--++.|++|.|||-|.++..=++.| ..+|++|.++.|...+....+.. .+...+.. +..+. +-+..+++
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~i~~~~-r~~~~-~dl~g~~L 88 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGNLKLIK-GNYDK-EFIKDKHL 88 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCCEEEEe-CCCCh-HHhCCCcE
Confidence 3578899999999999999988887 57999999999987654433211 01111111 11122 33577888
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
|+.+....+ +|+...+..+...+++|+
T Consensus 89 ViaATdD~~-----vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 89 IVIATDDEK-----LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred EEECCCCHH-----HHHHHHHHHHHcCCeEEE
Confidence 888876333 444444444443445553
No 277
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.85 E-value=0.048 Score=54.08 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=62.0
Q ss_pred ccCCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (342)
Q Consensus 162 ~l~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (342)
.+.|++|+|+|+ ..-...+++.| ...|++|.+|||........ . .....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence 479999999998 44678899998 68899999999986432110 0 01136888
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHhHHc-cCCCCcEEEec
Q 019328 232 EVLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNC 271 (342)
Q Consensus 232 ell~~sDiV~l~lplt~~t~~li~~~~l~-~mk~gailIN~ 271 (342)
+.++.||.|+++.+-. +-+. ++-+.++ .|+ ..+++++
T Consensus 372 ~~~~~ad~~v~~t~~~-~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTDHD-EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecCCH-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 9999999999998733 3333 3444444 355 4577774
No 278
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.83 E-value=0.02 Score=57.09 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=48.0
Q ss_pred CEEEEEccChHHHHHHH--HHH-h-cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 166 QTVGVIGAGRIGSAYAR--MMV-E-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~--~l~-~-a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+|+|||.|.+|...+- -++ . ++ |.+|..||+++..... ........+.. ...........++.+.++.||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~-~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLET-VEILAKKIVEE-LGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEE
Confidence 37999999999998554 122 1 33 5699999998754211 11111111111 11112233356889999999999
Q ss_pred EEcCCC
Q 019328 241 SLHPVL 246 (342)
Q Consensus 241 ~l~lpl 246 (342)
+.++|.
T Consensus 79 i~ai~~ 84 (423)
T cd05297 79 INTIQV 84 (423)
T ss_pred EEeeEe
Confidence 999983
No 279
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.83 E-value=0.047 Score=51.98 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=72.2
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
++|+|+|.|.||.-+|-+| ...|.+|..++|.... .+.+...-|-.+...+.. ..+.....-.+.....|+|++++-
T Consensus 3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 4799999999999999998 4678999999987532 222211101111111110 000000111123467899999987
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal 296 (342)
.. ++...+ +.....+.+++.++-.--| +-.++.+.+.+.+.++.++..
T Consensus 80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 43 233322 3445556788887766444 345666777776666665544
No 280
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.76 E-value=0.094 Score=49.61 Aligned_cols=104 Identities=17% Similarity=0.272 Sum_probs=59.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh--hHHHHHHhhhhhhhccCCCCCcccccc---CCHHHHhh
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR 235 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~ 235 (342)
++.||++.|+|.|..+++++-.|+ ..|+ +|.+++|+.. .+.+.+.+.+.. ........... ..+.+.+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhhh----ccCceEEEechhhhhhhhhhcc
Confidence 578899999999999999998764 5676 7999999853 222333222210 00000011111 11334566
Q ss_pred cCCEEEEcCCCCcc--ccc-ccCHhHHccCCCCcEEEecC
Q 019328 236 EADVISLHPVLDKT--TYH-LINKERLATMKKEAILVNCS 272 (342)
Q Consensus 236 ~sDiV~l~lplt~~--t~~-li~~~~l~~mk~gailIN~s 272 (342)
++|+|+.+.|..-. +.. ++. ....++++.++.++-
T Consensus 196 ~aDivINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~v 233 (288)
T PRK12749 196 SADILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV 233 (288)
T ss_pred cCCEEEECCCCCCCCCCCCCCCC--cHHHCCCCCEEEEec
Confidence 89999999986321 111 111 113355666676664
No 281
>PRK11579 putative oxidoreductase; Provisional
Probab=95.73 E-value=0.037 Score=53.48 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=44.2
Q ss_pred CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~ 241 (342)
.++||||+|.||+. .+..+.+.-++++. ++|+++....+ .+. ....+.+++++++ .-|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~----~~~-----------~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA----DWP-----------TVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh----hCC-----------CCceeCCHHHHhcCCCCCEEE
Confidence 48999999999985 56654333478876 57877543211 110 1123579999996 479999
Q ss_pred EcCCC
Q 019328 242 LHPVL 246 (342)
Q Consensus 242 l~lpl 246 (342)
+|+|.
T Consensus 70 I~tp~ 74 (346)
T PRK11579 70 IPTPN 74 (346)
T ss_pred EcCCc
Confidence 99994
No 282
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.72 E-value=0.073 Score=52.23 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=57.3
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh------------------hhHHHHHHhhhhhhhccCCCCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ------------------ATRLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+.. ....+...+.+.. ......
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~---~np~v~ 206 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAA---LNPDVQ 206 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHH---HCCCCE
Confidence 4689999999999999999999984 6777 688888761 0111111111100 000000
Q ss_pred cc-cc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328 222 VT-WK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 222 ~~-~~---~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~ 260 (342)
+. .. ...+++++++++|+|+.|+- +.+++.++++...+
T Consensus 207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~ 248 (376)
T PRK08762 207 VEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK 248 (376)
T ss_pred EEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 00 00 11245678889999888876 45677777665444
No 283
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.72 E-value=0.02 Score=48.30 Aligned_cols=103 Identities=21% Similarity=0.362 Sum_probs=58.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+|+|||. |.+|..+|-.|. +.++-++..+|+..... +............ .........+..+.+++||+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~-~g~a~Dl~~~~~~---~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA-EGEALDLSHASAP---LPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH-HHHHHHHHHHHHG---STEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc-eeeehhhhhhhhh---cccccccccccccccccccEEEEe
Confidence 37999999 999999998764 36667899999986532 1111111100000 001111123556778999999998
Q ss_pred C--CCCc-cccc-cc--CH-------hHHccCCCCcEEEecC
Q 019328 244 P--VLDK-TTYH-LI--NK-------ERLATMKKEAILVNCS 272 (342)
Q Consensus 244 l--plt~-~t~~-li--~~-------~~l~~mk~gailIN~s 272 (342)
. |..+ ++|. ++ |. +.+.+..|.++++.++
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 6 4333 2221 11 11 2333445778888874
No 284
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.71 E-value=0.05 Score=53.45 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=72.4
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh----------HHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
.++.|+||.|=|+|+.|+..|+.| ...|++|+++|-+..- ......+..+...... +... .+-
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~-----ga~~-i~~ 275 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYA-----GAEY-ITN 275 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhc-----CceE-ccc
Confidence 359999999999999999999997 5789999998766440 0000000000000000 1111 223
Q ss_pred HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
++++ ..|||.+-| .+.+.|+.+...++|-. +++--+.|++- .+|--..++.|
T Consensus 276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG 328 (411)
T COG0334 276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG 328 (411)
T ss_pred cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence 5544 468887654 57888999999998877 77888888865 33333333444
No 285
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.71 E-value=0.04 Score=51.13 Aligned_cols=108 Identities=21% Similarity=0.186 Sum_probs=64.8
Q ss_pred cccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
.|.+|+..|++|+|+ |.||..+||.|+ +-+++....-|....+..+... .+.. ..+.....|++..+.+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l~----~l~e----~~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRLT----LLQE----ELGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhhh----hccc----ccCCCeeeecccccccc
Confidence 478999999999998 999999999984 6565544444332221111000 0111 11122235666666666
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHH
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~ 280 (342)
|+++-... -.+-..|+... +|||+.+++-++-.=+|+.
T Consensus 232 ~i~v~vAs--~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 232 DILVWVAS--MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred ceEEEEee--cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 66544322 12234455544 5899999999988766654
No 286
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.69 E-value=0.098 Score=49.80 Aligned_cols=108 Identities=23% Similarity=0.311 Sum_probs=67.9
Q ss_pred ccCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
.+.|++|+++|-| ++.++.+..+ ..||++|....|..-...+.+.+. .+. .+.......++++.++.+|
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~---~G~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKA---KGIKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHH---cCCEEEEECCHHHHhCCCC
Confidence 4789999999995 9999999986 689999999887542111111111 111 1122334579999999999
Q ss_pred EEEEcCCCCc-----cc------ccccCHhHHccCCCCcEEEec-CCCccC
Q 019328 239 VISLHPVLDK-----TT------YHLINKERLATMKKEAILVNC-SRGPVI 277 (342)
Q Consensus 239 iV~l~lplt~-----~t------~~li~~~~l~~mk~gailIN~-sRG~~v 277 (342)
+|..---..+ +. .--++++.++.+|++++|.-+ =||.=|
T Consensus 219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev 269 (301)
T TIGR00670 219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEI 269 (301)
T ss_pred EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCccc
Confidence 9987421100 00 122466777778888777644 355433
No 287
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.68 E-value=0.02 Score=51.09 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=44.3
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
+++|||- |.||+.+++.+ +..|+.|+ +++||+|++|+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP 40 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP 40 (197)
T ss_pred EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence 7999998 99999999997 78898773 246899999999
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
-. .+.. .++.+. .++++++.-.
T Consensus 41 v~-~~~~-----~i~~~~--~~v~Dv~SvK 62 (197)
T PRK06444 41 ID-AALN-----YIESYD--NNFVEISSVK 62 (197)
T ss_pred HH-HHHH-----HHHHhC--CeEEeccccC
Confidence 43 2233 333333 3788987644
No 288
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.64 E-value=0.021 Score=47.96 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=50.3
Q ss_pred EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt 247 (342)
+-|+|-|.+|+++++.+ +.+|++|.++|++++. +..++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 46899999999999985 8999999999987431 01223221 2221
Q ss_pred cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal 296 (342)
++.. +.+ .+.+++++| ++++.-.|.+.|.++|++ +....|+
T Consensus 46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 1000 111 456677766 888999999999999887 4555554
No 289
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.57 E-value=0.19 Score=50.02 Aligned_cols=102 Identities=12% Similarity=0.209 Sum_probs=66.9
Q ss_pred ccCCCEEEEEccC---hHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
.+.|+||++||-+ ++.++++..+ ..+ ||+|....|..-...+.+.+. ++. .+.......++++.++++
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~---~G~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISR---NGHVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHh---cCCeEEEEcCHHHHhCCC
Confidence 4889999999994 8899999886 455 999998887532111111111 111 112233457999999999
Q ss_pred CEEEEcCCCCcc----------cccccCHhHHcc-CCCCcEEEec
Q 019328 238 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNC 271 (342)
Q Consensus 238 DiV~l~lplt~~----------t~~li~~~~l~~-mk~gailIN~ 271 (342)
|+|....-..+. ..-.++++.++. .|++++|.-+
T Consensus 310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 999885421111 012357888888 8889888855
No 290
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.046 Score=55.50 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=67.4
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
.+.|+++.|+|+|.+|.+.++.| +..|++|.++|..+.. .+.. . ..+ ..........+.++.+|+|+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~l-~-------~~g---~~~~~~~~~~~~l~~~D~VV 75 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRPH-A-------ERG---VATVSTSDAVQQIADYALVV 75 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHH-H-------hCC---CEEEcCcchHhHhhcCCEEE
Confidence 35789999999999999999986 7999999999976432 1111 1 111 11111112345567899988
Q ss_pred EcCCCCcccc----------cccCHhHHc-cC-C------C-CcEEEecCCCccCCHHHHHHHHHc
Q 019328 242 LHPVLDKTTY----------HLINKERLA-TM-K------K-EAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~lplt~~t~----------~li~~~~l~-~m-k------~-gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
.+-.-.+... .++++-.+. .+ + + ..+=|-=+-|..--..-+...|+.
T Consensus 76 ~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 76 TSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 8743223211 123332222 11 1 2 234454466887777777777775
No 291
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.53 E-value=0.28 Score=46.82 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=63.8
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|++|+++|= +++.++.+..+ ..||++|....|..-.......+.+ .+..+ .......+++++++++|+|
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvv 221 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVV 221 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 377899999998 78899999986 6899999998875321111111100 01111 1223457999999999999
Q ss_pred EEcC----CCCc---c-----cccccCHhHHccCCCCcEEEec
Q 019328 241 SLHP----VLDK---T-----TYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 241 ~l~l----plt~---~-----t~~li~~~~l~~mk~gailIN~ 271 (342)
..-. .... + ..--++++.++.+|+++++.-+
T Consensus 222 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 222 YTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred EecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 8752 1101 0 1123466667777777666554
No 292
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.52 E-value=0.047 Score=43.66 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=53.1
Q ss_pred EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEEEEc
Q 019328 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH 243 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV~l~ 243 (342)
+-|+|+|.+|+.+++.| +..+.+|.+.|+++...... . ..+. ........+.+.+ ++++|.|+++
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~~-~--------~~~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEEL-R--------EEGV-EVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHHH-H--------HTTS-EEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHHH-H--------hccc-ccccccchhhhHHhhcCccccCEEEEc
Confidence 46999999999999998 56667999999987643221 1 1111 1111112233322 5789999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEE
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILV 269 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailI 269 (342)
.+... .++.-...++.+.+...++
T Consensus 70 ~~~d~--~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 70 TDDDE--ENLLIALLARELNPDIRII 93 (116)
T ss_dssp SSSHH--HHHHHHHHHHHHTTTSEEE
T ss_pred cCCHH--HHHHHHHHHHHHCCCCeEE
Confidence 88443 4433344555555555554
No 293
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.52 E-value=0.064 Score=50.08 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=44.6
Q ss_pred CEEEEEc-cChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+|+|+| +|.||+.+++.+...-++++.+ +|+........ ..+. -.+..+.+...+.+++++...+|+|+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~---~~~~---~~~~~~~gv~~~~d~~~l~~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT---DAGE---LAGIGKVGVPVTDDLEAVETDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC---CHHH---hcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence 3799999 7999999999875456788664 67432211000 0000 0011111223346888886679999999
Q ss_pred CC
Q 019328 244 PV 245 (342)
Q Consensus 244 lp 245 (342)
.|
T Consensus 76 T~ 77 (266)
T TIGR00036 76 TT 77 (266)
T ss_pred CC
Confidence 86
No 294
>PRK12862 malic enzyme; Reviewed
Probab=95.51 E-value=0.51 Score=50.50 Aligned_cols=165 Identities=17% Similarity=0.215 Sum_probs=108.7
Q ss_pred CCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhc
Q 019328 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (342)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a 187 (342)
..|+|.|+.- +.+|=.+++-+++..|-. |+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~~---------------------~~~~~~~~iv~~GaGaag~~~a~~l-~~ 214 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLKLV---------------------GKDIEDVKLVASGAGAAALACLDLL-VS 214 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence 3589999843 234556777777776532 4578899999999999999999998 56
Q ss_pred CCc---EEEEEcCChh---hH---HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328 188 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 188 ~g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~ 258 (342)
.|. +++.+|+.-- .+ ...+...| .+. ....+|+|+++.+|+++=.- +-+.|+++.
T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~---a~~--------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~ 278 (763)
T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARY---AQK--------TDARTLAEVIEGADVFLGLS-----AAGVLKPEM 278 (763)
T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHH---hhh--------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 788 7999995520 00 11111111 111 11258999999999887542 258999999
Q ss_pred HccCCCCcEEEecCCCccC-CHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328 259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 259 l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~ 323 (342)
++.|.+.+++.=.|.-..- ..+..+++ ..|.|.+.|- ... --+..|+++-|-++-
T Consensus 279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~------p~Q~NN~~~FPgi~~ 334 (763)
T PRK12862 279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGR---SDY------PNQVNNVLCFPYIFR 334 (763)
T ss_pred HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECC---cCC------CCcccceeeccchhh
Confidence 9999999999999887642 22222332 2234555541 111 135678999998763
No 295
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.49 E-value=0.032 Score=49.73 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=32.1
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~ 198 (342)
+.|.+++|.|+|+|.+|.++++.|+ ..|. ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 5799999999999999999999985 6776 58888865
No 296
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.42 E-value=0.048 Score=49.20 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=31.7
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~ 198 (342)
..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 4689999999999999999999985 5566 58888876
No 297
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.40 E-value=0.034 Score=53.83 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=58.9
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh--------------------HHHHHHhhhhhhhcc-CC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKA-NG 218 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~-~~ 218 (342)
..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-. ..+...+ .++. ..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~----~l~~inp 94 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK----RLEEINS 94 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH----HHHHHCC
Confidence 4699999999999999999999985 6677 88888875310 0000000 0110 00
Q ss_pred CCCccc----cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328 219 EQPVTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 219 ~~~~~~----~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~ 260 (342)
...... ....+++++++++|+|+.++. +.+++.++++...+
T Consensus 95 ~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 95 DVRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred CcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 000000 012345678999999998876 66788777765544
No 298
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.39 E-value=0.46 Score=50.66 Aligned_cols=166 Identities=20% Similarity=0.266 Sum_probs=109.5
Q ss_pred hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~ 186 (342)
+..|+|.|+.- +.+|=.+++-+++.+|-. |+.+...++.|.|.|.-|-.+|+.| .
T Consensus 151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~~---------------------~~~~~~~~iv~~GaGaag~~~a~~l-~ 205 (752)
T PRK07232 151 RMDIPVFHDDQ---HGTAIISAAALLNALELV---------------------GKKIEDVKIVVSGAGAAAIACLNLL-V 205 (752)
T ss_pred hcCCCeecccc---chHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECccHHHHHHHHHH-H
Confidence 34689988743 234556777777776532 4578899999999999999999997 5
Q ss_pred cCCc---EEEEEcCChh---hH---HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328 187 GFKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 187 a~g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~ 257 (342)
..|. +++.+|++-- .+ ...+...| .+. ....+|.|+++.+|+++=. . +.+.|.++
T Consensus 206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~---a~~--------~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~ 269 (752)
T PRK07232 206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY---AVD--------TDARTLAEAIEGADVFLGL-S----AAGVLTPE 269 (752)
T ss_pred HcCCCcccEEEEcCCCeecCCCcccccHHHHHH---hcc--------CCCCCHHHHHcCCCEEEEc-C----CCCCCCHH
Confidence 6788 7999986621 01 11111111 111 1235899999999987654 2 25899999
Q ss_pred HHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328 258 RLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 258 ~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~ 323 (342)
.++.|.+.+++.=.|.-..- ..+..+++ ..|.|.+-|- ...| -+..|+++-|-++-
T Consensus 270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------nQ~NN~~~FPgi~~ 326 (752)
T PRK07232 270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIFR 326 (752)
T ss_pred HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEECC---cCCC------CcccceeecchhhH
Confidence 99999999999999887752 22222222 2234555551 1112 35678888887763
No 299
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.39 E-value=0.12 Score=49.95 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=69.9
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|++|+++|= .++.++++..+ ..||++|..+.|..-...+...+......+. .+.......++++.++++|+|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~eav~~aDvv 226 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEV---SGGSVLVTDDVDEAVKDADFV 226 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHh---cCCeEEEEcCHHHHhCCCCEE
Confidence 588999999997 67788888876 5899999999876311111111100000000 111233457999999999999
Q ss_pred EEcC-----CCCc--cc-------ccccCHhHHccCCCCcEEEecC---CCccCC
Q 019328 241 SLHP-----VLDK--TT-------YHLINKERLATMKKEAILVNCS---RGPVID 278 (342)
Q Consensus 241 ~l~l-----plt~--~t-------~~li~~~~l~~mk~gailIN~s---RG~~vd 278 (342)
..-. .... +. .-.++++.++.+|++++|.-+. ||.=|+
T Consensus 227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis 281 (338)
T PRK02255 227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVT 281 (338)
T ss_pred EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceec
Confidence 9833 2100 01 1346888888999998887663 554333
No 300
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.35 E-value=0.025 Score=56.41 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=48.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~l~l 244 (342)
+++.|+|+|.+|+.+|+.| ...|.+|.++|+++.... ......+...-. + .......++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~~-~~~~~~~~~~~~-g----d~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERLR-RLQDRLDVRTVV-G----NGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHHH-HHHhhcCEEEEE-e----CCCCHHHHHHcCCCcCCEEEEec
Confidence 4799999999999999997 678999999999876422 111100000000 0 00112345555 78899999999
Q ss_pred CCCc
Q 019328 245 VLDK 248 (342)
Q Consensus 245 plt~ 248 (342)
+...
T Consensus 74 ~~~~ 77 (453)
T PRK09496 74 DSDE 77 (453)
T ss_pred CChH
Confidence 8543
No 301
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.34 E-value=0.065 Score=51.11 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=56.6
Q ss_pred EEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCC--CCccccccCCHHHHhhcCCEEEE
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sDiV~l 242 (342)
+|+|||.|.+|..+|..|+ ..| .+|..+|++.........+ . ..... .+.. ....+. +.++.||+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~d-l----~~~~~~~~~~~-i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMD-L----AHGTPFVKPVR-IYAGDY-ADCKGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHH-H----HccccccCCeE-EeeCCH-HHhCCCCEEEE
Confidence 7999999999999999874 556 5899999986432111111 0 00000 0001 112344 45799999999
Q ss_pred cCCCCcc---ccc--------ccC--HhHHccCCCCcEEEecC
Q 019328 243 HPVLDKT---TYH--------LIN--KERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~lplt~~---t~~--------li~--~~~l~~mk~gailIN~s 272 (342)
+.+.... ++- ++. .+.+....+.+++++++
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9885322 111 110 12333445778888874
No 302
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.34 E-value=0.093 Score=53.10 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=70.2
Q ss_pred ccCCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh----hhccCC------CCC
Q 019328 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP 221 (342)
Q Consensus 162 ~l~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~ 221 (342)
.+.|++|+|+|+ ..-...+++.| ...|.+|.+|||........ ..++. +..... ...
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 45778899998 58899999999985432110 00100 000000 000
Q ss_pred ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh-HHccCCCCcEEEecCCCccCCHHHHH
Q 019328 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV 283 (342)
Q Consensus 222 ~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~-~l~~mk~gailIN~sRG~~vd~~aL~ 283 (342)
-......++++.++.||+|+++.+- ++-+. ++-+ ..+.|++..+++|. |+ ++|.+.+-
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 0012234667899999999999884 33444 3433 35568766688884 54 34665553
No 303
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.31 E-value=0.067 Score=51.94 Aligned_cols=101 Identities=16% Similarity=0.260 Sum_probs=56.4
Q ss_pred CEEEEEcc-ChHHHHHHHHHHhcC-CcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~a~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
.+|+|+|. |.+|+.+++.|. .. +.++.+ ++++.... ....+.+.. +. ....... ...+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~~-l~--~~~~~~~-~~~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHPH-LR--GLVDLNL-EPIDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCcc-cc--ccCCcee-ecCCHHHhhcCCCEEEE
Confidence 47999998 999999999984 55 677773 45443210 000000100 00 0001111 11255667678999999
Q ss_pred cCCCCcccccccCHhHHccC-CCCcEEEecCCCccCC
Q 019328 243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID 278 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~m-k~gailIN~sRG~~vd 278 (342)
|+|... ..+....+ +.|..+|+.|-.-=.+
T Consensus 75 alP~~~------s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 75 ALPHGV------SAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred CCCchH------HHHHHHHHHhCCCEEEeCChhhhcC
Confidence 999432 23333332 5688899988443333
No 304
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.24 E-value=0.1 Score=49.58 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cCC
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD 238 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD 238 (342)
..++||||.|+||+..+..+.+.-++++. .+|++++.....+...++ .. ..+.+.+++++ +.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G----------i~-~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG----------VA-TSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC----------CC-cccCCHHHHHhCcCCCCCC
Confidence 35899999999999977665444456655 567765432112111111 11 12367888885 578
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecC---CCcc
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGPV 276 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~s---RG~~ 276 (342)
+|+.+.|. .... +-.....+.|..+|+-+ +|++
T Consensus 73 iVf~AT~a--~~H~---e~a~~a~eaGk~VID~sPA~~~Pl 108 (302)
T PRK08300 73 IVFDATSA--GAHV---RHAAKLREAGIRAIDLTPAAIGPY 108 (302)
T ss_pred EEEECCCH--HHHH---HHHHHHHHcCCeEEECCccccCCc
Confidence 89999883 2221 11223346788888765 4554
No 305
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.24 E-value=0.24 Score=46.70 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=74.0
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+..|+++.|+|.|..+++++..| ...|+ +|++++|+.++ .++..+.++.. .. ........+++.. .++|+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~~----~~-~~~~~~~~~~~~~-~~~dl 193 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGEL----GA-AVEAAALADLEGL-EEADL 193 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhhc----cc-ccccccccccccc-cccCE
Confidence 356899999999999999999998 57885 79999998764 23332222210 00 0001111222222 16999
Q ss_pred EEEcCCCCccccc---ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328 240 ISLHPVLDKTTYH---LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 240 V~l~lplt~~t~~---li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~ 290 (342)
|+.+.|..-.-.. +++ ...++++.++.++-=.+. ++.=|.+|=+.|.
T Consensus 194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~ 243 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQGA 243 (283)
T ss_pred EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcCC
Confidence 9999997654431 333 566788889988855443 5555555555553
No 306
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.061 Score=54.67 Aligned_cols=37 Identities=32% Similarity=0.308 Sum_probs=33.1
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~ 199 (342)
++.+++|+|+|+|..|.++|+.| +..|.+|.++|...
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~ 40 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTRE 40 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCC
Confidence 36789999999999999999997 68999999999764
No 307
>PLN02527 aspartate carbamoyltransferase
Probab=95.19 E-value=0.18 Score=48.14 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=64.6
Q ss_pred ccCCCEEEEEccC---hHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
.+.|+||+++|-+ +..++.+..+ ..| |++|....|..-...+.+.+. ++. .+.......++++.++.|
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~---~g~~~~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTS---KGVEWEESSDLMEVASKC 219 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHH---cCCEEEEEcCHHHHhCCC
Confidence 4789999999965 6889999886 466 999998887531111111111 111 112233457899999999
Q ss_pred CEEEEcCCCCc------c-c-----ccccCHhHHccCCCCcEEEecC-CC
Q 019328 238 DVISLHPVLDK------T-T-----YHLINKERLATMKKEAILVNCS-RG 274 (342)
Q Consensus 238 DiV~l~lplt~------~-t-----~~li~~~~l~~mk~gailIN~s-RG 274 (342)
|+|....-..+ + - .-.++++.++..|++++|.-+. ||
T Consensus 220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg 269 (306)
T PLN02527 220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRL 269 (306)
T ss_pred CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCc
Confidence 99988532101 0 0 1334667777777777776542 44
No 308
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.18 E-value=0.065 Score=51.03 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=59.1
Q ss_pred CEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
++|+|||.|.+|+.+|..|+ ..| -+|..+|++.... +.............. .... ....+.+ .++.||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~-i~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVK-IKAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeE-EEcCCHH-HhCCCCEEEEc
Confidence 47999999999999999874 556 4899999986542 221111100000000 0001 1123444 47899999999
Q ss_pred CCCCc---ccc-ccc--C-------HhHHccCCCCcEEEecC
Q 019328 244 PVLDK---TTY-HLI--N-------KERLATMKKEAILVNCS 272 (342)
Q Consensus 244 lplt~---~t~-~li--~-------~~~l~~mk~gailIN~s 272 (342)
..... ++| .++ | .+.+....|.+++|+++
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 76421 122 111 1 12345567889999987
No 309
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.13 E-value=0.14 Score=49.63 Aligned_cols=119 Identities=20% Similarity=0.231 Sum_probs=65.0
Q ss_pred CEEEEEccChHHHHHHHHHHh---------cCCcEEEE-EcCChh---------hHHHHHHhhhhhhhccCCCCC-c-cc
Q 019328 166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA---------TRLEKFVTAYGQFLKANGEQP-V-TW 224 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~---------a~g~~V~~-~d~~~~---------~~~~~~~~~~~~~~~~~~~~~-~-~~ 224 (342)
.+|||+|+|.||+.+++.+.+ +.+++|.+ +|++.. .+...+... .+... . ..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~-------~~~~~~~~~~ 75 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEE-------TGKLADYPEG 75 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhc-------cCCcccCccc
Confidence 379999999999999998742 23577654 454311 111111110 01000 0 00
Q ss_pred cccCCHHHHh--hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc
Q 019328 225 KRASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM 291 (342)
Q Consensus 225 ~~~~~l~ell--~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i 291 (342)
....++++++ ...|+|+.++|....+...--.-..+.++.|.-+|-..-+.+. ..+.|.++.++..+
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 1124788888 4679999999965443222112235556677666654444432 45677777666544
No 310
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.12 E-value=0.1 Score=50.23 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=94.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV~l 242 (342)
..+|+||++.||+.++-.+ ..-|..|.+|+|+.++.. ++... .+. ........|+++++ +.--.|++
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD-~flan------eak--~~~i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVD-EFLAN------EAK--GTKIIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHH-HHHHH------hhc--CCcccCCCCHHHHHHhcCCCcEEEE
Confidence 3589999999999999987 478999999999987532 22221 111 12223356888875 44566666
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 304 (342)
.+-...-.-. +-++....|.+|-++|+-+...--|+..-.+.|.+..|-..+.-|.-.|--
T Consensus 77 lvkAG~pVD~-~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEG 137 (487)
T KOG2653|consen 77 LVKAGAPVDQ-FIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEG 137 (487)
T ss_pred EeeCCCcHHH-HHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccc
Confidence 6654433333 335677889999999999999999999999999999988888888887764
No 311
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.06 E-value=0.057 Score=49.83 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=61.5
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhccCC-CCCccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANG-EQPVTW 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~-~~~~~~ 224 (342)
..|.+++|+|||+|.+|..+|+.|+ ..|. ++..+|...-.. . ..+ .+.....++.-. ......
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 4799999999999999999999985 5665 677777552110 0 000 000000000000 000000
Q ss_pred -c-c--cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 225 -K-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 225 -~-~--~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
. . ..+++++++++|+|+.|+- +.+++..+++...+..+ -+|..
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~i---p~v~~ 153 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKK---PLVSG 153 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCC---EEEEe
Confidence 0 0 1235678899999999885 66788878776655433 35554
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.01 E-value=0.12 Score=49.65 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=61.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh---cCCE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV 239 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sDi 239 (342)
.|++|.|.|.|.+|...++.+ +..|+ +|++.++++++.. +..+++. .........+++++.. ..|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~~--~a~~lGa-------~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSLS--LAREMGA-------DKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHHH--HHHHcCC-------cEEecCCcccHHHHhccCCCCCE
Confidence 589999999999999999985 89998 6888888765432 2222221 1000011123444432 2689
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
|+-+.... ++ -...++.++++..++.++..
T Consensus 239 vid~~G~~-~~----~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 239 SFEVSGHP-SS----INTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EEECCCCH-HH----HHHHHHHhhcCCEEEEEccC
Confidence 88887632 11 24567889999999998753
No 313
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.98 E-value=0.15 Score=52.39 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=34.9
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
.++.+|++.|+|.|.+|++++..| ...|++|+.++|+.++
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~ 414 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER 414 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 357899999999999999999998 5788999999998653
No 314
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.96 E-value=0.061 Score=52.94 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=64.3
Q ss_pred cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCCEE
Q 019328 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI 240 (342)
Q Consensus 163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sDiV 240 (342)
-..++|+|+|. |.+|+++.+.|...=++++..+.+..... ....+.+ ..+.. + . .....+++. .++++|+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~-~--~--~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVF-PHLIT-Q--D--LPNLVAVKDADFSDVDAV 108 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhC-ccccC-c--c--ccceecCCHHHhcCCCEE
Confidence 35569999998 99999999997533367887776543211 0000000 00000 0 0 001112222 24889999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHH
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~ 284 (342)
++++|.. ...+....|+.|..+|+.|..-..+.++.++
T Consensus 109 f~Alp~~------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 109 FCCLPHG------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred EEcCCHH------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 9999943 3344555567789999998766666655444
No 315
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.88 E-value=0.056 Score=42.28 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS 241 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~ 241 (342)
..++.|+|.|++|++++....+..|++ +.++|.+++.- +. .-.+...+.+++++.+. .|+-+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~--------G~-------~i~gipV~~~~~~l~~~~~i~iai 67 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI--------GK-------EIGGIPVYGSMDELEEFIEIDIAI 67 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT--------TS-------EETTEEEESSHHHHHHHCTTSEEE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc--------Cc-------EECCEEeeccHHHhhhhhCCCEEE
Confidence 357999999999999985433444544 34566655431 10 00112234578888777 99999
Q ss_pred EcCC
Q 019328 242 LHPV 245 (342)
Q Consensus 242 l~lp 245 (342)
+++|
T Consensus 68 i~VP 71 (96)
T PF02629_consen 68 ITVP 71 (96)
T ss_dssp EES-
T ss_pred EEcC
Confidence 9999
No 316
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.88 E-value=0.087 Score=53.00 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=70.7
Q ss_pred ccCCCEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
..+++++.|+|+|..|.+ +|+.| +..|.+|.++|....+....+ +..+ .......+ .+.+..+|+|
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~l--------~~~g---i~~~~~~~-~~~~~~~d~v 70 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQRL--------LELG---AIIFIGHD-AENIKDADVV 70 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHHH--------HHCC---CEEeCCCC-HHHCCCCCEE
Confidence 456789999999999999 79997 689999999998754322211 1111 11111112 3455689998
Q ss_pred EEc--CCCC-cccc-------cccCHhHH-cc-CCC-CcEEEecCCCccCCHHHHHHHHHcCC
Q 019328 241 SLH--PVLD-KTTY-------HLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 241 ~l~--lplt-~~t~-------~li~~~~l-~~-mk~-gailIN~sRG~~vd~~aL~~aL~~g~ 290 (342)
+.. +|.+ |..+ .++++-.+ .. +++ ..+-|-=+.|..=-..-+.+.|+...
T Consensus 71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 877 3422 2211 23444333 33 332 34555556788877777778887643
No 317
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.85 E-value=0.1 Score=52.81 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=68.5
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
.+.+++|.|+|+|..|+++|+.| ...|++|.++|+..... .+..+.. +..........+.+..+|+|+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~~~----------gi~~~~~~~~~~~~~~~d~vV 79 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIEVT----------GVADISTAEASDQLDSFSLVV 79 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHHhc----------CcEEEeCCCchhHhcCCCEEE
Confidence 57899999999999999999997 68999999999765432 1111111 111111112234456789988
Q ss_pred Ec--CCC-Cccc-------ccccCHhHHcc-------C-CC-CcEEEecCCCccCCHHHHHHHHHcC
Q 019328 242 LH--PVL-DKTT-------YHLINKERLAT-------M-KK-EAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 242 l~--lpl-t~~t-------~~li~~~~l~~-------m-k~-gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
.. +|. +|+. ..++++-.+.. + ++ ..+-|-=+-|..--..-|...|+..
T Consensus 80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 76 332 2221 12233333321 1 12 2344544668877777777888763
No 318
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.84 E-value=0.46 Score=46.85 Aligned_cols=172 Identities=20% Similarity=0.157 Sum_probs=104.0
Q ss_pred hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~ 186 (342)
+..|+|.|+.-- -+|=.+++-+|+.+|- .|+.|+..+|.+.|.|.-|-.+++.+ .
T Consensus 165 ~~~IPvFhDDqq---GTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~ 219 (432)
T COG0281 165 RMNIPVFHDDQQ---GTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V 219 (432)
T ss_pred cCCCCccccccc---HHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence 445777776543 4466677777766643 35789999999999999999999997 6
Q ss_pred cCCc---EEEEEcCChh---hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328 187 GFKM---NLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 187 a~g~---~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~ 260 (342)
+.|+ +|+.+|+.-- .+.+-....+......+.. .. ... ++.+..+|+++-+- +.+.|.++.++
T Consensus 220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~----~~-~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~ 288 (432)
T COG0281 220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDT----GE-RTL-DLALAGADVLIGVS-----GVGAFTEEMVK 288 (432)
T ss_pred HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhh----cc-ccc-cccccCCCEEEEcC-----CCCCcCHHHHH
Confidence 8888 5999997621 1100000000000000000 00 111 45788999887662 23899999999
Q ss_pred cCCCCcEEEecCCCcc-CCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328 261 TMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 261 ~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~ 323 (342)
.|.+.+++.=.|.-.. +..++..++=+...|.+-| -|. .|- +..|+++-|.|+-
T Consensus 289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rsd--~Pn-QvNNvL~FPgIfr 343 (432)
T COG0281 289 EMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RSD--YPN-QVNNVLIFPGIFR 343 (432)
T ss_pred HhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CCC--Ccc-cccceeEcchhhh
Confidence 9999999998887653 2222222221111333332 221 111 7889999999974
No 319
>PRK12861 malic enzyme; Reviewed
Probab=94.83 E-value=0.77 Score=49.03 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=106.4
Q ss_pred CceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcC
Q 019328 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (342)
Q Consensus 109 gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~ 188 (342)
.|+|.|+.- +.+|=.+++-+++.+|-. |+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~~~---------------------gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLKVV---------------------GKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHHh---------------------CCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 699988743 234556777777776532 4578889999999999999999997 577
Q ss_pred Cc---EEEEEcCChh---hH---HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHH
Q 019328 189 KM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (342)
Q Consensus 189 g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l 259 (342)
|. +++.+|+.-- .+ ...+...| .+. ....+|.|+++.+|+++=. . +.+.|.++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~---a~~--------~~~~~L~eai~~advliG~-S----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERF---AQE--------TDARTLAEVIGGADVFLGL-S----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHH---Hhh--------cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHH
Confidence 88 7999995420 00 01111111 111 1125899999999977543 2 2589999999
Q ss_pred ccCCCCcEEEecCCCccC-CHHHHHHHHHcCC-ccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328 260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 260 ~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~ 323 (342)
+.|.+.+++.=.|.-..- ..+..++ ..|+ |.+-|- . ..--+..|+++-|-++-
T Consensus 276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aivaTGr------s---~~pnQ~NN~l~FPgi~~ 330 (764)
T PRK12861 276 KAMAARPLILALANPTPEIFPELAHA--TRDDVVIATGR------S---DYPNQVNNVLCFPYIFR 330 (764)
T ss_pred HHhccCCEEEECCCCCccCCHHHHHh--cCCCEEEEeCC------c---CCCCccceeeecchhhH
Confidence 999999999999887642 2222222 2244 333311 1 11235679999998763
No 320
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.80 E-value=0.13 Score=50.36 Aligned_cols=89 Identities=24% Similarity=0.328 Sum_probs=59.3
Q ss_pred cCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH
Q 019328 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (342)
Q Consensus 163 l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (342)
|.||||||+|+- .=...++++| +..|++|.+|||-....... . .+ ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~-~~-~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------N-FP-DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------c-CC-CceEeCCHHH
Confidence 899999999985 3456788887 68999999999976432110 0 00 1234679999
Q ss_pred HhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEe
Q 019328 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (342)
Q Consensus 233 ll~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN 270 (342)
.++.||+++++.. .++-+.+ +-+.+ .|| +..+++
T Consensus 373 ~~~~aDaivi~te-w~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 373 ALKGADAIVINTE-WDEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHhhCCEEEEecc-HHHHhcc-Chhhh-hcc-CCEEEe
Confidence 9999999999865 2333332 33333 555 344443
No 321
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.79 E-value=0.22 Score=47.53 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=62.0
Q ss_pred ccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
.+.|++|++||= +++.++++..+ ..||+++....|..-.. .... ......++++.++.+|
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~--------------~~~~--~~~~~~d~~ea~~~aD 215 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP--------------EGMP--EYGVHTDLDEVIEDAD 215 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc--------------cccc--ceEEECCHHHHhCCCC
Confidence 478999999988 58999999986 68999999988743110 0000 1134579999999999
Q ss_pred EEEEcCCCCcc--------c-----ccccCHhHHccCCCCcEEEec
Q 019328 239 VISLHPVLDKT--------T-----YHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 239 iV~l~lplt~~--------t-----~~li~~~~l~~mk~gailIN~ 271 (342)
+|....-..+. - .-.++++.++.+|++++|.-+
T Consensus 216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc 261 (305)
T PRK00856 216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHP 261 (305)
T ss_pred EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence 99875321111 0 123466666667777666544
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.79 E-value=0.32 Score=43.94 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=60.8
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-----hhcC
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA 237 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~s 237 (342)
..|.+|.|.|.|.+|+.+++.+ +..|.+|++.+++..... +....+ ..........+..+. -...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~~--~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKLE--LAKELG-------ADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHHHhC-------CceeccCCcCCHHHHHHHhcCCCC
Confidence 3578999999999999999985 799999999998764321 111111 000000001112111 2457
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~ 276 (342)
|+++.+++... .-...++.|+++..+++++....
T Consensus 203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~~ 236 (271)
T cd05188 203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTSG 236 (271)
T ss_pred CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCCC
Confidence 88888776321 23446778888888888876543
No 323
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.22 Score=49.74 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=68.2
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc-CCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-sDiV 240 (342)
++.||++.|+|.|.+|.++|+.| ...|++|.++|+........ .+ .+...+ ..........+++.. .|+|
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g---~~~~~~~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEG---IKVICGSHPLELLDEDFDLM 72 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcC---CEEEeCCCCHHHhcCcCCEE
Confidence 46799999999999999999998 68999999999764321110 00 011111 111111122344454 8988
Q ss_pred EEcC--CCC-cc-------cccccCHhHH-ccC-CCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 241 SLHP--VLD-KT-------TYHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 241 ~l~l--plt-~~-------t~~li~~~~l-~~m-k~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
+..- |.+ |. ...++.+..+ ..+ +...+-|--+.|..--..-|...|+.
T Consensus 73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8764 322 11 1122333323 333 33445555567888777777777875
No 324
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.76 E-value=0.13 Score=43.05 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~ 198 (342)
+|.|+|+|.+|.++|+.|+ ..|. ++..+|+.
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 5899999999999999984 6777 78888866
No 325
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.75 E-value=0.28 Score=46.24 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=65.2
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++.||++.|+|.|..|++++-.|+ ..|+ +|.+++|+..+. ++..+.+.. ..+..........++++.+..+|+|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div 198 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence 456899999999999999999874 6787 789999987542 222221110 0000000000011234566789999
Q ss_pred EEcCCCCcccc--cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~lplt~~t~--~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
+.+.|..-... -.++. ..++++.++.++-=.+ ..+.-|.+|-+.|
T Consensus 199 INaTp~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 245 (283)
T PRK14027 199 VNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG 245 (283)
T ss_pred EEcCCCCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence 99998543111 01222 2345555666554332 3344444444444
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.72 E-value=0.1 Score=52.76 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=68.9
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
+..+.++++.|+|.|.+|.++|+.| ...|.+|.++|+..........+ .++..+ +....-...+ ....+|+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~g---v~~~~~~~~~-~~~~~D~ 81 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALG---ATVRLGPGPT-LPEDTDL 81 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcC---CEEEECCCcc-ccCCCCE
Confidence 3467899999999999999999997 68999999999764322111111 111111 1111001111 3456899
Q ss_pred EEEcCCCCcccc----------cccCH-hHH-ccCCC----CcEEEecCCCccCCHHHHHHHHHc
Q 019328 240 ISLHPVLDKTTY----------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 240 V~l~lplt~~t~----------~li~~-~~l-~~mk~----gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
|+++.-..+.+. .++++ +++ ..+.+ ..+-|-=+.|..--..-|...|+.
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 988853323222 12333 222 33422 235555567887777777777765
No 327
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.71 E-value=0.056 Score=54.08 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=77.9
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
..|++|.|+|+|.-|.++|+.| ...|++|.++|.++.+....... . .........-....+.+..+|+|+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~---~~~~i~~~~g~~~~~~~~~~d~vV~ 75 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----L---LLEGIEVELGSHDDEDLAEFDLVVK 75 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----h---hccCceeecCccchhccccCCEEEE
Confidence 4499999999999999999998 68999999999766541000000 0 0001111111112266788999999
Q ss_pred c--CCCCcc--------cccccCH-hHHccC-CCCcEE-EecCCCccCCHHHHHHHHHc--------CCccEEEeecCCC
Q 019328 243 H--PVLDKT--------TYHLINK-ERLATM-KKEAIL-VNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED 301 (342)
Q Consensus 243 ~--lplt~~--------t~~li~~-~~l~~m-k~gail-IN~sRG~~vd~~aL~~aL~~--------g~i~gaalDV~~~ 301 (342)
. +|.+.. -..++++ +.|-+. ++..++ |--+-|..=-+.-+...|++ |.|...++|+.++
T Consensus 76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 8 443322 0112322 333332 233344 44445776555555555553 5678888999988
Q ss_pred CCCC
Q 019328 302 EPYM 305 (342)
Q Consensus 302 EP~~ 305 (342)
++.+
T Consensus 156 ~~~~ 159 (448)
T COG0771 156 AEPA 159 (448)
T ss_pred cCCC
Confidence 5543
No 328
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.69 E-value=0.081 Score=46.19 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=52.7
Q ss_pred EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh---h--------------HHHHHHhhhhhhhccCCCCCccc----
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA---T--------------RLEKFVTAYGQFLKANGEQPVTW---- 224 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~---- 224 (342)
+|+|+|.|.+|..+|+.|+ ..|. ++..+|...- . +.+......... ........
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l---np~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI---NPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH---CCCCEEEEEEee
Confidence 5899999999999999985 5677 5888887641 0 000000000000 00000000
Q ss_pred cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 225 ~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
....+++++++++|+|+.|.. +.+++..++....+.
T Consensus 77 ~~~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~ 112 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN 112 (174)
T ss_pred cChhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 011245678899999999844 677887676666554
No 329
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.088 Score=52.90 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=67.7
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++.|++|.|+|+|.+|.++|+.| ...|.+|.++|....... .. ...+.. .... .. +-+..+|+|+
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~l--------~~~g~~---~~~~-~~-~~~~~~d~vv 70 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-KA--------AAAGIT---TADL-RT-ADWSGFAALV 70 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-HH--------HhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence 47799999999999999999997 689999999997644221 11 111111 1111 11 2346799887
Q ss_pred Ec--CCCC-c----c---ccc----ccCH-hHHcc-C-----CCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 242 LH--PVLD-K----T---TYH----LINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~--lplt-~----~---t~~----li~~-~~l~~-m-----k~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
.. +|.+ | . ++. ++.+ +.+.+ + +...+-|.=+.|..--..-|...|+.
T Consensus 71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 64 3322 1 1 111 1332 22222 2 33455666678998888888888876
No 330
>PLN02342 ornithine carbamoyltransferase
Probab=94.63 E-value=0.74 Score=44.72 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=63.8
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|+||+++|= .++-++++..+ ..||++|....|..-...+...+. .+..+. .......++++.++.+|+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence 478999999997 35777777775 589999998887542111111111 011010 1223457999999999999
Q ss_pred EEcCC----CCcc--------cccccCHhHHccCCCCcEEEec
Q 019328 241 SLHPV----LDKT--------TYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 241 ~l~lp----lt~~--------t~~li~~~~l~~mk~gailIN~ 271 (342)
..-.- ..++ ..-.++++.++.+|++++|.-+
T Consensus 264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 97631 1111 1134577778888888777655
No 331
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.62 E-value=0.065 Score=55.61 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=34.5
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
....|||||||-|..|+.+++.+ +.+|.+|+.+|+++.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence 47899999999999999999985 789999999998764
No 332
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.60 E-value=0.09 Score=50.21 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=31.5
Q ss_pred CEEEEEccChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAY 210 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~ 210 (342)
.+|||=|||+||+.+++.+...- .|+|++.+-..++...++...|
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llky 47 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKY 47 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhh
Confidence 37999999999999999974334 4999988763333333333333
No 333
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.58 E-value=0.19 Score=50.09 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=51.9
Q ss_pred ccccCCCEEEEEcc----------ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccC
Q 019328 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (342)
Q Consensus 160 g~~l~gktvGIiG~----------G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (342)
+.++.|++|+|+|+ ..-...+++.| ...| ++|.+|||........ + .. .....
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~---------~~--~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L---------DG--LVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c---------cC--ceeeC
Confidence 45789999999998 45678899998 5775 9999999985421000 0 00 01236
Q ss_pred CHHHHhhcCCEEEEcCCC
Q 019328 229 SMDEVLREADVISLHPVL 246 (342)
Q Consensus 229 ~l~ell~~sDiV~l~lpl 246 (342)
++++.++.||.|+++.+-
T Consensus 379 ~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 379 SLDEALATADVLVMLVDH 396 (415)
T ss_pred CHHHHHhCCCEEEECCCC
Confidence 889999999999999884
No 334
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.57 E-value=0.18 Score=50.32 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=59.0
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH----HhhcCC
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREAD 238 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~sD 238 (342)
+..+++.|+|+|.+|+.+++.| ...|.+|+++|++++.. +...... .+. ........+.+. -+.++|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~-~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNT-LVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCC-eEEECCCCCHHHHHhcCCccCC
Confidence 4568999999999999999998 68899999999887642 1111110 000 000001122222 357899
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
.|+++.+... .+++-....+.+.+..+++-+
T Consensus 300 ~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 300 AFIALTNDDE--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence 9998888543 344434444555555555544
No 335
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.57 E-value=0.093 Score=48.28 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=58.1
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH---Hhhhh--------hhhccCC-CCCccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF---VTAYG--------QFLKANG-EQPVTW 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~---~~---~~~~~--------~~~~~~~-~~~~~~ 224 (342)
..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-.... .+ ....| ..++.-. ......
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 4699999999999999999999985 5565 67777765321000 00 00000 0000000 000000
Q ss_pred c--c--cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 225 ~--~--~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
. . ..+++++++++|+|+.+.. +.+++..+++...+.
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA 138 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence 0 1 1235678899999998885 577888887766554
No 336
>PRK06153 hypothetical protein; Provisional
Probab=94.50 E-value=0.1 Score=51.21 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=62.0
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh-----HH------HH------HHhhhhhhhccCCCCCcc
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----RL------EK------FVTAYGQFLKANGEQPVT 223 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~-----~~------~~------~~~~~~~~~~~~~~~~~~ 223 (342)
.|++++|+|||+|.+|..++..|+ ..|. ++..+|...-. +. +. ..+.+...+..-. ..+.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I~ 250 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGIV 250 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeEE
Confidence 689999999999999999999986 5565 78888865110 00 00 0000000000000 0010
Q ss_pred c--cc--cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 224 W--KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 224 ~--~~--~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
. .. ..++ +.+..+|+|+.|+. +.++|.++++...+. +.-+|++|=|-
T Consensus 251 ~~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l 301 (393)
T PRK06153 251 PHPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGL 301 (393)
T ss_pred EEeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeecc
Confidence 0 01 1122 35688999999988 455688777766553 55577766554
No 337
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.2 Score=45.31 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=32.2
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.+.||++-|.|. |.||+.+++.| ...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA 41 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence 367899999996 99999999998 477999998887653
No 338
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.39 E-value=0.19 Score=47.49 Aligned_cols=90 Identities=14% Similarity=0.232 Sum_probs=51.7
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l 242 (342)
.++||||.|.||+..+..+.+.-++++. .+|++++.....+...++ .. ....+.+++++ +-|+|++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~G----------i~-~~~~~~e~ll~~~dIDaV~i 70 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELG----------VK-TSAEGVDGLLANPDIDIVFD 70 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCC----------CC-EEECCHHHHhcCCCCCEEEE
Confidence 3799999999999887665433356655 467766432111111111 11 12357888885 5788999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEec
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
+.|.. ++. +-....++.|..+|+-
T Consensus 71 aTp~~--~H~---e~a~~al~aGk~VIde 94 (285)
T TIGR03215 71 ATSAK--AHA---RHARLLAELGKIVIDL 94 (285)
T ss_pred CCCcH--HHH---HHHHHHHHcCCEEEEC
Confidence 99833 222 1123334556555544
No 339
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.39 E-value=0.33 Score=46.92 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=64.0
Q ss_pred ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+.|+||++||=+ ++.++.+..+ ..||++|....|..-...+.+.+......+. .+.......++++.++++|+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~ea~~~aDv 227 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAE---TGGKITITDDIDEGVKGSDV 227 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHH---cCCeEEEEcCHHHHhCCCCE
Confidence 4789999999975 7888988886 6899999998875311111111100000000 11123345799999999999
Q ss_pred EEEcCCCC--c------c-----cccccCHhHHccCC-CCcEEEec
Q 019328 240 ISLHPVLD--K------T-----TYHLINKERLATMK-KEAILVNC 271 (342)
Q Consensus 240 V~l~lplt--~------~-----t~~li~~~~l~~mk-~gailIN~ 271 (342)
|..-.-.. . + ..-.++++.++.+| |+++|.-+
T Consensus 228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 98853210 0 0 11235677777775 47776655
No 340
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.38 E-value=0.087 Score=54.39 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=56.5
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV~ 241 (342)
-++-|+|+|++|+.+|+.| +..|.++++.|.+++..... .+ . +. ..-.....+.+-+ ++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~~~~-~~-~-------g~-~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRVDEL-RE-R-------GI-RAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHHHHH-HH-C-------CC-eEEEcCCCCHHHHHhcCccccCEEE
Confidence 5689999999999999998 68899999999987643221 11 1 11 1111111222222 47899999
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEE
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILV 269 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailI 269 (342)
++++.+.++..++-. ...+.|...+|
T Consensus 487 v~~~~~~~~~~iv~~--~~~~~~~~~ii 512 (558)
T PRK10669 487 LTIPNGYEAGEIVAS--AREKRPDIEII 512 (558)
T ss_pred EEcCChHHHHHHHHH--HHHHCCCCeEE
Confidence 999976665544432 23334555555
No 341
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.38 E-value=0.1 Score=50.62 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=54.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCCEEEE
Q 019328 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL 242 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sDiV~l 242 (342)
++|+|+|. |.+|+.+++.|...=++++.+ .++..... ...+.+. ...........++++ ...++|+|++
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~--~l~~~~~------~~~~~~~~~~~~~~~~~~~~vD~Vf~ 74 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK--PLSDVHP------HLRGLVDLVLEPLDPEILAGADVVFL 74 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc--chHHhCc------ccccccCceeecCCHHHhcCCCEEEE
Confidence 68999996 999999999974323677654 45322110 0000000 000000001222332 4578999999
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~ 279 (342)
|+|... ...+ ..+..+.|..+|+.|-.--.+.
T Consensus 75 alP~~~-~~~~----v~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 75 ALPHGV-SMDL----APQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred CCCcHH-HHHH----HHHHHhCCCEEEECCcccCCCC
Confidence 999432 1111 2222357899999985544443
No 342
>PLN02602 lactate dehydrogenase
Probab=94.32 E-value=0.22 Score=48.51 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=58.7
Q ss_pred CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCC-ccccccCCHHHHhhcCCEEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~ell~~sDiV~l 242 (342)
++|+|||.|.+|..+|-.|+ +++.-++..+|...+.....-.| . .+.. ... .......+.++ +++||+|++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D-L----~~~~~~~~~~~i~~~~dy~~-~~daDiVVi 111 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD-L----QHAAAFLPRTKILASTDYAV-TAGSDLCIV 111 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH-H----HhhhhcCCCCEEEeCCCHHH-hCCCCEEEE
Confidence 69999999999999998764 34445899999876432111111 1 1100 000 11111134444 899999999
Q ss_pred cCCC--Cc-cccc-cc--C-------HhHHccCCCCcEEEecC
Q 019328 243 HPVL--DK-TTYH-LI--N-------KERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~lpl--t~-~t~~-li--~-------~~~l~~mk~gailIN~s 272 (342)
+.-. .+ +||. ++ | .+.+....|.+++|+++
T Consensus 112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8432 22 2442 22 1 12344457889999988
No 343
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.30 E-value=0.079 Score=52.47 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=31.0
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHH
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFV 207 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~ 207 (342)
.+|||.|||+||+.++|.+...++++|++ .||......-.+.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayl 128 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYM 128 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHH
Confidence 59999999999999999853248899888 6665444333333
No 344
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.28 E-value=0.23 Score=51.78 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=43.8
Q ss_pred CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc-cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEc
Q 019328 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD 196 (342)
Q Consensus 119 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g-~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d 196 (342)
.....||.++-|=|-++| |+.....+ ..|.+.+|.|||.|.+|..+|+.| .+.|. ++..+|
T Consensus 307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence 456677777766655442 43222122 569999999999999999999998 47787 577777
Q ss_pred C
Q 019328 197 L 197 (342)
Q Consensus 197 ~ 197 (342)
.
T Consensus 370 ~ 370 (664)
T TIGR01381 370 N 370 (664)
T ss_pred C
Confidence 4
No 345
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.28 E-value=2.8 Score=40.10 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=49.9
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.|+||++||- +++.++++..+ ..||++|....|..-. +...+..-...+..+ ......++++.++++|+|
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g----~i~~~~d~~~av~~aDvv 222 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG----TLSWEMNLHKAVSHADYV 222 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC----CeEEEeCHHHHhCCCCEE
Confidence 478999999998 78999999986 5899999999885421 010000000001111 122346899999999999
Q ss_pred EEcC
Q 019328 241 SLHP 244 (342)
Q Consensus 241 ~l~l 244 (342)
..-.
T Consensus 223 y~d~ 226 (311)
T PRK14804 223 YTDT 226 (311)
T ss_pred Eeee
Confidence 8843
No 346
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.27 E-value=0.31 Score=47.19 Aligned_cols=76 Identities=12% Similarity=0.224 Sum_probs=49.7
Q ss_pred cccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 161 NLLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 161 ~~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
..+.|+||+++|= +++..+.+..++.-+|++|....|..-...+.+.+. ++.. +.......++++.++++
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~a 227 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKA 227 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccC
Confidence 3588999999998 578888888654355999998887532111111111 1111 11233457999999999
Q ss_pred CEEEEc
Q 019328 238 DVISLH 243 (342)
Q Consensus 238 DiV~l~ 243 (342)
|+|..-
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999884
No 347
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.26 E-value=0.061 Score=52.08 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.0
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
||||||-|..|+.+++.+ +.+|.+|+++|+++.
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~ 33 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN 33 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence 599999999999999985 789999999998764
No 348
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.25 E-value=0.07 Score=45.58 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=31.8
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhh
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAY 210 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~ 210 (342)
+|||-|||+|||.++|.+...-.++|.+. |+.+..+...+..+|
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~Llky 46 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKY 46 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhc
Confidence 79999999999999999755667888766 455344444444333
No 349
>PRK05086 malate dehydrogenase; Provisional
Probab=94.22 E-value=0.19 Score=48.13 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=58.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEE
Q 019328 166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~--a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++++|||. |.||+.+|..++. ..+..+..+|+.+... ..... +.+.. ..........++.+.++.||+|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~--g~alD----l~~~~~~~~i~~~~~~d~~~~l~~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP--GVAVD----LSHIPTAVKIKGFSGEDPTPALEGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc--ceehh----hhcCCCCceEEEeCCCCHHHHcCCCCEEE
Confidence 58999999 9999999977633 4556888999864321 10000 00100 00010001246677889999999
Q ss_pred EcCCC--Ccc-ccc-cc------CHh---HHccCCCCcEEEecCCCc
Q 019328 242 LHPVL--DKT-TYH-LI------NKE---RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 242 l~lpl--t~~-t~~-li------~~~---~l~~mk~gailIN~sRG~ 275 (342)
++.-. .+. +|. ++ -.+ .++.-.+.+++++++---
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99653 221 121 11 122 333346788999986544
No 350
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.21 E-value=0.14 Score=48.45 Aligned_cols=109 Identities=23% Similarity=0.269 Sum_probs=71.2
Q ss_pred ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhccCC-CCCccccccCC--------
Q 019328 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANG-EQPVTWKRASS-------- 229 (342)
Q Consensus 160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-------- 229 (342)
+-...+.++-++|+|.+|-..+-. ++-.|+-|..+|-.+....+ .+..+ .++.... +..-++.+..|
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keq--v~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~ 235 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQ--VESLGAKFLAVEDEESAGGYAKEMSEEFIAKQA 235 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhh--hhhcccccccccccccCCCccccCCHHHHHHHH
Confidence 345778889999999999999887 46789999988876543111 11111 0111111 11111222222
Q ss_pred --HHHHhhcCCEEEEc--CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 230 --MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 230 --l~ell~~sDiV~l~--lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
+.+..++.|||+.. +|.-| .-.|+.++..+.||||+++|+.+
T Consensus 236 ~~~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 236 ELVAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 45667899999765 67655 45688999999999999999974
No 351
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.20 E-value=0.11 Score=52.49 Aligned_cols=116 Identities=20% Similarity=0.177 Sum_probs=68.0
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
+.||+++|+|+|.-|.++|+.| ...|++|+++|.......... .. ++.... ......+ ++.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~-~~----l~~~~~---~~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREV-GA----LADAAL---LVETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHH-HH----HhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence 5689999999999999999997 689999999996543211110 00 111000 0011112 355678999988
Q ss_pred c--CCCC-ccc-------ccccCHhHH--cc-CC-----CCcEEEecCCCccCCHHHHHHHHHc
Q 019328 243 H--PVLD-KTT-------YHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~--lplt-~~t-------~~li~~~~l--~~-mk-----~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
. +|.+ |.- ..++++-.| .. ++ +..+-|-=+.|..--..-+...|+.
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 7 3422 211 124444333 33 32 2345555567887777777777765
No 352
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.18 E-value=0.17 Score=48.23 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=45.7
Q ss_pred CEEEEEccChHHHH-HHHHHHhcCC--cE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCE
Q 019328 166 QTVGVIGAGRIGSA-YARMMVEGFK--MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 239 (342)
Q Consensus 166 ktvGIiG~G~IG~~-vA~~l~~a~g--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDi 239 (342)
.++||||+|.|++. .+..+ +..+ +. |.++|+++.. .+.+.+.|+ .. ..+.+++++++. -|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~----------~~-~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG----------IA-KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC----------CC-cccCCHHHHhcCCCCCE
Confidence 58999999977754 66665 4554 34 5566888764 333333332 11 246799999986 489
Q ss_pred EEEcCCC
Q 019328 240 ISLHPVL 246 (342)
Q Consensus 240 V~l~lpl 246 (342)
|+++.|.
T Consensus 71 V~Iatp~ 77 (342)
T COG0673 71 VYIATPN 77 (342)
T ss_pred EEEcCCC
Confidence 9999993
No 353
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.15 E-value=0.18 Score=48.57 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=28.8
Q ss_pred EEEEEccChHHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhh
Q 019328 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYG 211 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~----g~~V~~~d~~~~~~~~~~~~~~~ 211 (342)
+|||+|+|+||+.+.|.+. .. +.+|...+.....+...+..+|+
T Consensus 1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~~~~~~ayll~yD 48 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELADQASMAHLLRYD 48 (325)
T ss_pred CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCCCHHHHHHHHhhC
Confidence 5899999999999999863 33 36777665433333333443443
No 354
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.13 E-value=0.16 Score=49.70 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=59.4
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh------------------HHHHHHhhhhhhhccCCCCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|+|.+|..+++.|+ ..|. ++..+|...-. ..+......... .....
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~---np~v~ 112 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI---QPDIR 112 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH---CCCCe
Confidence 5699999999999999999999984 6776 78888866210 000000000000 00000
Q ss_pred cccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 222 VTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 222 ~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
+... ...+++++++++|+|+.|+. +.+++.++|+...+.
T Consensus 113 i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~ 155 (370)
T PRK05600 113 VNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT 155 (370)
T ss_pred eEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1000 11346678999999988776 577888887765544
No 355
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.12 E-value=0.13 Score=53.65 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV 240 (342)
..++-|+|+|++|+.+++.| ...|.++++.|.+++..... +..+. ..-.-...+.+-+ +++||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~~---------~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAVNLM---------RKYGY-KVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHHHHH---------HhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence 45799999999999999998 68899999999987642211 11111 1111112233222 5789999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
+++.+..+++..++ ...+++.|...+|-.+|
T Consensus 469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence 99999766554432 34455666666654444
No 356
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.09 E-value=0.15 Score=48.34 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=25.5
Q ss_pred EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~ 198 (342)
+|.|+|.|.+|..+|+.|+ ..|. ++..+|..
T Consensus 1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC
Confidence 5899999999999999984 6776 57777743
No 357
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.96 E-value=0.058 Score=47.43 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=46.3
Q ss_pred EEEEEccChHHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328 167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~-l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l 242 (342)
++.|||.|++|++++.. ..+..||++. +||-.++. .|. ...+......+++++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~--------VG~-----~~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK--------VGT-----KIGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH--------hCc-----ccCCeeeechHHHHHHHHhcCccEEEE
Confidence 59999999999999964 2246789865 78877653 121 111233445567888887 6778999
Q ss_pred cCCC
Q 019328 243 HPVL 246 (342)
Q Consensus 243 ~lpl 246 (342)
|+|.
T Consensus 153 tVPa 156 (211)
T COG2344 153 TVPA 156 (211)
T ss_pred EccH
Confidence 9993
No 358
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.85 E-value=0.24 Score=47.00 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=56.8
Q ss_pred EEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 168 vGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
|+|||.|.+|..+|-.++ ..| .++..+|++.... ............. . .........+ .+.++.||+|+++..
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~-~-~~~~i~~~~~-~~~l~~aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKA-KGDALDLSHASAF-L-ATGTIVRGGD-YADAADADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHH-HHHHHhHHHhccc-c-CCCeEEECCC-HHHhCCCCEEEEcCC
Confidence 589999999999999874 455 5899999976532 1111111110000 0 0011111233 457899999999965
Q ss_pred CCc---cccccc---C-------HhHHccCCCCcEEEecC
Q 019328 246 LDK---TTYHLI---N-------KERLATMKKEAILVNCS 272 (342)
Q Consensus 246 lt~---~t~~li---~-------~~~l~~mk~gailIN~s 272 (342)
... .+|.-+ | ...++...|.+++||++
T Consensus 76 ~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 76 APRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 321 122110 1 12344455899999998
No 359
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.82 E-value=0.31 Score=46.90 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=60.2
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC---hhhHHHHHHhhhhhhhccCCCCCccccccCCHHH--HhhcC
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREA 237 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~s 237 (342)
..|.+|.|+|.|.||...++.+ +..|++|++.+++ +.+. ++..+++.. ... ....++.+ .....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~--~~~~~~Ga~-------~v~-~~~~~~~~~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKA--DIVEELGAT-------YVN-SSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHH--HHHHHcCCE-------Eec-CCccchhhhhhcCCC
Confidence 3588999999999999999985 8999999999874 3221 122222211 000 00111111 22457
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
|+|+-++.... .-.+.++.|+++..++.++.
T Consensus 240 d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATGVPP-----LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcCCHH-----HHHHHHHHccCCcEEEEEec
Confidence 99999876221 22457888999999888764
No 360
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.78 E-value=0.15 Score=49.59 Aligned_cols=97 Identities=27% Similarity=0.191 Sum_probs=58.5
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh------------------HHHHHHhhhhhhhcc-CCCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKA-NGEQ 220 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~-~~~~ 220 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-. ..+...+ .++. ....
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~----~l~~~np~v 98 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESARE----AMLALNPDV 98 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHH----HHHHHCCCc
Confidence 4699999999999999999999985 6665 67777765310 0000000 0000 0000
Q ss_pred Ccccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCC
Q 019328 221 PVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (342)
Q Consensus 221 ~~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk 263 (342)
.+... ...+..++++.+|+|+.|.. +.+++.+++....+.-+
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~~i 144 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARLGI 144 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 00000 01234578899999999876 56788777765554433
No 361
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.77 E-value=0.29 Score=47.02 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=59.1
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc---CCHHHHhhc
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 236 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~ 236 (342)
-++.++|+|+|. |+||..+|..|+ +...-++..+|..... .+. .+ +.+... ....... .+..+.++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a-~D-----l~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVA-AD-----LSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccc-cc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence 467789999999 999999999873 1455689999983211 100 00 001111 1111111 223678899
Q ss_pred CCEEEEcCCC--Cc-ccc-cccC------HhH---HccCCCCcEEEecCCCc
Q 019328 237 ADVISLHPVL--DK-TTY-HLIN------KER---LATMKKEAILVNCSRGP 275 (342)
Q Consensus 237 sDiV~l~lpl--t~-~t~-~li~------~~~---l~~mk~gailIN~sRG~ 275 (342)
||+|+++.-. .+ +|+ .++. ++. +..-.+.++++.++-+-
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 9999988543 22 122 1221 122 33335677888776544
No 362
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.75 E-value=0.24 Score=49.58 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=68.5
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++.+|++.|+|.|.+|.++|+.| ...|.+|.++|.......... ++.. ..+.........+..+..+|+|+
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~-------l~~~-~~gi~~~~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ-------IGKM-FDGLVFYTGRLKDALDNGFDILA 72 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH-------Hhhc-cCCcEEEeCCCCHHHHhCCCEEE
Confidence 35689999999999999999997 689999999997654311110 1000 00111111111234557899998
Q ss_pred EcCCCCc---ccc-------cccCH-hHHcc-CC---CCcEEEecCCCccCCHHHHHHHHHcC
Q 019328 242 LHPVLDK---TTY-------HLINK-ERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 242 l~lplt~---~t~-------~li~~-~~l~~-mk---~gailIN~sRG~~vd~~aL~~aL~~g 289 (342)
...-..+ .-+ .++.+ +.+.. ++ ...+-|-=+.|..=-..-+...|+..
T Consensus 73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 8733223 211 12222 23333 32 23455555678877777777778753
No 363
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.72 E-value=0.33 Score=46.35 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=64.5
Q ss_pred CEEEEEcc-ChHHHHHHHHHHhcCCc--EEEEEcCChh-hHHHHHHhh-hhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~a~g~--~V~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
++|+|+|. |.+|..+|..|+ ..|. +|+.+|+... ......... +...... .. ........+.+ .++.||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~-~~-~~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAA-GI-DAEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchhcc-CC-CcEEEECCCHH-HhCCCCEE
Confidence 48999998 999999999874 4443 6999998541 111111000 0000000 00 01111123444 58999999
Q ss_pred EEcCCCCc---ccc-cc-------cC--HhHHccCCCCcEEEecCCCccCCHHHHHHH----HHcCCccEEE
Q 019328 241 SLHPVLDK---TTY-HL-------IN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRVG 295 (342)
Q Consensus 241 ~l~lplt~---~t~-~l-------i~--~~~l~~mk~gailIN~sRG~~vd~~aL~~a----L~~g~i~gaa 295 (342)
+++..... +++ .+ +. ...+....|++++|+++ ..+|.-..+-. +...++.|.+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 99975321 121 11 10 12244445677888776 55554442221 3445666664
No 364
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.67 E-value=0.2 Score=47.79 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=43.0
Q ss_pred EEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC--cc-ccccCCHHHHhhcCCEEEE
Q 019328 167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VT-WKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~ell~~sDiV~l 242 (342)
+|+|||.|.+|..+|-.|+ +.+.-++..+|...+.....-.| +.+..... .. .....+ -+.++.||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~~~~-y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIRAGD-YDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEEECC-HHHhCCCCEEEE
Confidence 5899999999999998764 34444799999875432111111 11111100 00 111223 467799999999
Q ss_pred cCC
Q 019328 243 HPV 245 (342)
Q Consensus 243 ~lp 245 (342)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 843
No 365
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.66 E-value=0.38 Score=48.10 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=61.5
Q ss_pred ccccCCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (342)
Q Consensus 160 g~~l~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
+..+.|++|+|+|+ ..-+..+++.| ...|.+|.+|||........ ..+ + ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~------------~---~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY------------G---IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc------------C---ccc
Confidence 45689999999999 46678999997 68899999999984321110 000 0 011
Q ss_pred HHH-HhhcCCEEEEcCCCCcccccccCHhHHc-cCCCCcEEEecCCCcc
Q 019328 230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (342)
Q Consensus 230 l~e-ll~~sDiV~l~lplt~~t~~li~~~~l~-~mk~gailIN~sRG~~ 276 (342)
+++ .++.||.|+++..- ++-+. ++-+.+. .||...++|+ +|+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~h-~~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVGH-QQFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccCC-HHhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 222 36789999999873 33333 4444443 4564568888 46554
No 366
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=93.65 E-value=0.29 Score=47.43 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=64.6
Q ss_pred CEEEEEccChHHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.+|||||. .+|+..++.+...- +.++. ++|++.+. ..++.+.|+ ...+.+++++++..|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~g------------i~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRLG------------VPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHhC------------CCccCCHHHHhcCCCEEEEE
Confidence 58999999 68999998864322 47766 46877653 333333332 12357999999999999999
Q ss_pred CCCC-cccccccCHhHHccCCCCc-EEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328 244 PVLD-KTTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (342)
Q Consensus 244 lplt-~~t~~li~~~~l~~mk~ga-ilIN~sRG~~vd~~aL~~aL~~g~i~ga 294 (342)
+|.+ |...|. +-..+.|+.|. +|+--==. .-+.++|+++.++..+.-.
T Consensus 70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 9842 222221 22333344442 22221111 2344566666666554433
No 367
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.61 E-value=0.28 Score=49.03 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=60.6
Q ss_pred CEEEEEccChHHHHHHHHHHhc---------CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328 166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a---------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (342)
-+|||+|+|.||+.+++.+.+. .+.++. ++|++..... ...........++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~--------------~~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR--------------GVDLPGILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc--------------CCCCcccceeCCHHHHhh
Confidence 4799999999999998875321 245644 4577643310 000011123468999995
Q ss_pred --cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc
Q 019328 236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM 291 (342)
Q Consensus 236 --~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i 291 (342)
+.|+|+.+++.....+ .-..+.|+.|.-+|...-+.+. .-+.|.++.++...
T Consensus 70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 4699999987432111 1123555666555533222222 23567777666544
No 368
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.60 E-value=0.098 Score=45.09 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=48.0
Q ss_pred EEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 168 vGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl 246 (342)
|.|+|. |.+|+.+++.| ..-|.+|.+..|++.+... ..... . .........++.+.++.+|.|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~~~~~--~-----~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--SPGVE--I-----IQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--CTTEE--E-----EESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--ccccc--c-----ceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 578995 99999999997 5788999999999765321 00000 0 000011123567788999999999975
Q ss_pred Ccc
Q 019328 247 DKT 249 (342)
Q Consensus 247 t~~ 249 (342)
+..
T Consensus 71 ~~~ 73 (183)
T PF13460_consen 71 PPK 73 (183)
T ss_dssp TTT
T ss_pred hcc
Confidence 444
No 369
>PRK08223 hypothetical protein; Validated
Probab=93.59 E-value=0.24 Score=46.82 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=57.1
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH---Hhhhh--------hhhccC-CCCCcc-
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF---VTAYG--------QFLKAN-GEQPVT- 223 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~---~~~~---~~~~~--------~~~~~~-~~~~~~- 223 (342)
..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. ..++ .+..| ..++.- ....+.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA 101 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 4699999999999999999999985 5665 577777542110 0000 00000 000000 000000
Q ss_pred ---ccccCCHHHHhhcCCEEEEcCCCC-cccccccCHhHHcc
Q 019328 224 ---WKRASSMDEVLREADVISLHPVLD-KTTYHLINKERLAT 261 (342)
Q Consensus 224 ---~~~~~~l~ell~~sDiV~l~lplt-~~t~~li~~~~l~~ 261 (342)
.....+.+++++.+|+|+-++..- -+++.++|..-.+.
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~ 143 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR 143 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence 011346778889999998777532 26777777665543
No 370
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.53 E-value=0.56 Score=44.87 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=48.7
Q ss_pred ccCCCEEEEEcc---ChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
.+.|++|+++|= +++.++.+..+ ..||+ ++....|..-. .. ...........++++.++.+
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~a 218 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNS 218 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCC
Confidence 377999999998 59999999987 68999 99988875311 00 00001233457899999999
Q ss_pred CEEEEc
Q 019328 238 DVISLH 243 (342)
Q Consensus 238 DiV~l~ 243 (342)
|+|...
T Consensus 219 Dvvy~~ 224 (310)
T PRK13814 219 DVIVTL 224 (310)
T ss_pred CEEEEC
Confidence 999873
No 371
>PRK10206 putative oxidoreductase; Provisional
Probab=93.53 E-value=0.21 Score=48.34 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=42.7
Q ss_pred EEEEEccChHHHH-HHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (342)
Q Consensus 167 tvGIiG~G~IG~~-vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~ 241 (342)
++||||+|.|++. .+..+... -++++. ++|++++.. .+.+.|+ ....+.+++++++ +.|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~~-----------~~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIYS-----------HIHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhcC-----------CCcccCCHHHHhcCCCCCEEE
Confidence 7999999998863 34433222 257776 588875432 2222221 0123578999996 569999
Q ss_pred EcCCCC
Q 019328 242 LHPVLD 247 (342)
Q Consensus 242 l~lplt 247 (342)
+++|..
T Consensus 70 I~tp~~ 75 (344)
T PRK10206 70 VCTHAD 75 (344)
T ss_pred EeCCch
Confidence 999943
No 372
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.31 E-value=0.31 Score=46.52 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=51.1
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
+|+|+|- |-.|.++.|+|+.--.+++.....+... ...+.+++++++|++++|+|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence 7999997 9999999999865556676655322110 01245677789999999999
Q ss_pred CCcccccccCHhHHccCCCCcEEEecC
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
.. .+..+. ... .+.|..+|+.|
T Consensus 59 ~~-~s~~~~-~~~---~~~g~~VIDlS 80 (310)
T TIGR01851 59 DD-AAREAV-SLV---DNPNTCIIDAS 80 (310)
T ss_pred HH-HHHHHH-HHH---HhCCCEEEECC
Confidence 43 222221 111 24688888887
No 373
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=93.29 E-value=0.52 Score=47.42 Aligned_cols=110 Identities=20% Similarity=0.142 Sum_probs=70.2
Q ss_pred ccCCCEEEEEcc----ChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328 162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (342)
Q Consensus 162 ~l~gktvGIiG~----G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (342)
-++-++|.|||. |.+|..+.+.| +..|+ +|+.++|..... .+...+.+++++-.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~ 63 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD 63 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence 356689999999 88999999997 55554 798888864320 11233568999988
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCcc-----CCHHHHHHHHHcCCccEE
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPV-----IDEVALVEHLKQNPMFRV 294 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~-----vd~~aL~~aL~~g~i~ga 294 (342)
..|++++++|- +.+...+. +..+ .+-++++| .-+-++. -.++.|.++.+++.+.-.
T Consensus 64 ~~Dlavi~vp~-~~~~~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 64 PVDLAVIVVPA-KYVPQVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CCCEEEEecCH-HHHHHHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 89999999992 22333332 2222 34444444 3333332 235778888777766544
No 374
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.21 E-value=0.22 Score=52.13 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV 240 (342)
..++-|+|+|++|+.+|+.| +..|.++.+.|.+++..... +..+. ..-+....+.+-+ ++++|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~~---------~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHIETL---------RKFGM-KVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHHHHH---------HhcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46899999999999999998 68899999999887642211 11111 1111112233322 4689999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEe
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN 270 (342)
+++++..+.+..+ ....+.+.|+..++-
T Consensus 469 vv~~~d~~~n~~i--~~~ar~~~p~~~iia 496 (621)
T PRK03562 469 INAIDDPQTSLQL--VELVKEHFPHLQIIA 496 (621)
T ss_pred EEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence 9999866555443 234444556655543
No 375
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.20 E-value=0.24 Score=44.64 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=47.7
Q ss_pred EEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 168 vGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl 246 (342)
|.|+|. |.+|+.+++.|. .-+.+|.+.-|..++.........+...- ...+....++.+.++.+|.|++++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-----~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQALGAEVV-----EADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHHHTTTEEE-----ES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhhcccceEe-----ecccCCHHHHHHHHcCCceEEeecCc
Confidence 678996 999999999985 57889998888764322211111111100 01112235678889999999999995
Q ss_pred C
Q 019328 247 D 247 (342)
Q Consensus 247 t 247 (342)
.
T Consensus 75 ~ 75 (233)
T PF05368_consen 75 S 75 (233)
T ss_dssp S
T ss_pred c
Confidence 4
No 376
>PRK07411 hypothetical protein; Validated
Probab=93.20 E-value=0.23 Score=48.99 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=60.2
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH---Hhhhh--------hhhccC-CCCCccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF---VTAYG--------QFLKAN-GEQPVTW 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~---~~~~---~~~~~--------~~~~~~-~~~~~~~ 224 (342)
..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. ...+ ....| ..++.- ....+..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 4699999999999999999999985 5665 677777652110 0000 00000 000000 0000000
Q ss_pred c----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCC
Q 019328 225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (342)
Q Consensus 225 ~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ 264 (342)
. ...+..++++.+|+|+.|+- +.+++.++|+...+.-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 0 11234578899999988876 567888888776665555
No 377
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.3 Score=45.80 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.4
Q ss_pred cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
..+.||++-|.|. |.||..+|++++ ..|++|+.++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 4788999999995 889999999984 67999999988753
No 378
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.09 E-value=0.36 Score=44.94 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhh
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~ 201 (342)
.|++|.|+|.|.||...++.+ +.+|++ |++.++++.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~r 157 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPDR 157 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence 588999999999999999985 899996 8888876543
No 379
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.09 E-value=0.32 Score=46.57 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=57.5
Q ss_pred EEEEEcc-ChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc---cCCHHHHhhcCCEEE
Q 019328 167 TVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 241 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sDiV~ 241 (342)
+|+|||. |.+|..+|-.|+ +.+.-++..+|... ..-+. .. +.+ ......... ..++.+.++.||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a--~D----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVA--AD----LSH-IPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEE--ch----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence 5899999 999999998764 24445899999875 21000 00 111 111111111 123567899999999
Q ss_pred EcCCC--Cc-ccccc-c--CH-------hHHccCCCCcEEEecCC
Q 019328 242 LHPVL--DK-TTYHL-I--NK-------ERLATMKKEAILVNCSR 273 (342)
Q Consensus 242 l~lpl--t~-~t~~l-i--~~-------~~l~~mk~gailIN~sR 273 (342)
++.-. .| .+|.- + |. +.+..-.|++++|+++-
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 88542 22 22211 1 11 23444578999999865
No 380
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.07 E-value=0.3 Score=47.08 Aligned_cols=121 Identities=12% Similarity=0.178 Sum_probs=63.0
Q ss_pred EEEEEccChHHHHHHHHHHhc-------CCcEEEEE-cCChhhHHHH-H-HhhhhhhhccCCCCCccccccCCHHHHh-h
Q 019328 167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYY-DLYQATRLEK-F-VTAYGQFLKANGEQPVTWKRASSMDEVL-R 235 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a-------~g~~V~~~-d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~ell-~ 235 (342)
+|+|+|+|++|+.+++.|.+. ++.+|.+. |++.....+. + .+..-............ ....++++++ .
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~-~~~~~~~~ll~~ 80 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEID-YEKIKFDEIFEI 80 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCC-CCcCCHHHHhcC
Confidence 799999999999999987432 66776644 5432100000 0 00000000000000000 0012566664 4
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcC
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN 289 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g 289 (342)
++|+|+=|.|...+-.. .-.-..+.|+.|.-+|-.+-|.+. .-+.|.++.+++
T Consensus 81 ~~DVvVE~t~~~~~g~~-~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 81 KPDVIVDVTPASKDGIR-EKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCCEEEECCCCCCcCch-HHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 68999999875321110 112235556788888877777765 455666665554
No 381
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.96 E-value=0.37 Score=46.10 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=58.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc--c-CCHHHHhhcCCE
Q 019328 166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV 239 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~sDi 239 (342)
.+|+|||. |++|..+|-.|+ .-+ -++..+|.. ...-+. .. +.+.. ....... . .++.+.++.||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~g~a--lD----L~~~~-~~~~i~~~~~~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTPGVA--AD----LSHIN-TPAKVTGYLGPEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-ccceee--hH----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence 37999999 999999999863 334 479999987 321111 00 11111 1111111 1 234677899999
Q ss_pred EEEcC--CCCc-cccccc---CH-------hHHccCCCCcEEEecCCC
Q 019328 240 ISLHP--VLDK-TTYHLI---NK-------ERLATMKKEAILVNCSRG 274 (342)
Q Consensus 240 V~l~l--plt~-~t~~li---~~-------~~l~~mk~gailIN~sRG 274 (342)
|+++. |..| +||--+ |. +.+..-.|.+++||++--
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 99884 4333 233221 11 234445789999999754
No 382
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.96 E-value=0.33 Score=45.87 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=54.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
.|+++.|+|.|.||...++.+ +.+|++ |.+.|+........ .... . ...-++.-...|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~rl~~a------------~~~~--~--i~~~~~~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRRRDGA------------TGYE--V--LDPEKDPRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHHHhh------------hhcc--c--cChhhccCCCCCEEEE
Confidence 467899999999999999985 899997 55667654332111 0000 0 0000111235788888
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
+..... + -...++.++++..++.++-
T Consensus 207 ~~G~~~-~----~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 207 ASGDPS-L----IDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCHH-H----HHHHHHhhhcCcEEEEEee
Confidence 876321 1 1456788999999988763
No 383
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.43 Score=42.86 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~ 199 (342)
.+.||++-|.|. |.||+.+|+.| ...|++|+...++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence 467899999996 99999999998 47799988766543
No 384
>PRK04148 hypothetical protein; Provisional
Probab=92.89 E-value=0.34 Score=40.48 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
+++++.+||+| -|..+|+.| +..|.+|++.|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence 56889999999 899999998 5789999999998864
No 385
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=92.89 E-value=1.2 Score=43.03 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=47.7
Q ss_pred c-CCCEEEEEccC-------hHHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (342)
Q Consensus 163 l-~gktvGIiG~G-------~IG~~vA~~l~~a~g~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (342)
+ .|+||+|+|.| ++.++++..+ ..||++|.+..| ..-...+.+.+......+.. +.......++++.
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~ea 241 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAES---GGSLTVSHDIDSA 241 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence 5 78999887654 6788888876 589999999998 22110111111000000111 1123345799999
Q ss_pred hhcCCEEEEcC
Q 019328 234 LREADVISLHP 244 (342)
Q Consensus 234 l~~sDiV~l~l 244 (342)
++++|+|..-.
T Consensus 242 ~~~aDvvy~~~ 252 (335)
T PRK04523 242 YAGADVVYAKS 252 (335)
T ss_pred hCCCCEEEece
Confidence 99999998754
No 386
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.78 E-value=3.4 Score=39.18 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=67.0
Q ss_pred cCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++|+|+..+|=| +++.++.... ..|||++....|..-...+++.+......... +.......++++.++.+|+|.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~---g~~i~~t~d~~eAv~gADvvy 226 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKES---GGKITLTEDPEEAVKGADVVY 226 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc---CCeEEEecCHHHHhCCCCEEE
Confidence 999999999986 6788887774 58999999887653222222222211111111 112334578999999999998
Q ss_pred EcCCC--Ccccc-----------cccCHhHHccCCCCcEEEec
Q 019328 242 LHPVL--DKTTY-----------HLINKERLATMKKEAILVNC 271 (342)
Q Consensus 242 l~lpl--t~~t~-----------~li~~~~l~~mk~gailIN~ 271 (342)
.-+.. ..+.. --+|++.++.-+++++|.-|
T Consensus 227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 76442 22221 34577778888888888776
No 387
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.72 E-value=0.52 Score=44.83 Aligned_cols=96 Identities=21% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH---HHHhh--cC
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVLR--EA 237 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell~--~s 237 (342)
.|.+|.|+|.|.+|...++.+ +.+|++ |++.+++..+.. +..+++. .........+. .++.. ..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~~--~~~~~ga-------~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPERLE--LAKALGA-------DFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHhCC-------CEEEcCCcchHHHHHHHhCCCCC
Confidence 389999999999999999985 899999 999888765421 1122221 00000000112 22222 47
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
|+|+-+..... .....++.++++..++.++..
T Consensus 233 d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 233 DVAIECSGNTA-----ARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred CEEEECCCCHH-----HHHHHHHHhhcCCEEEEEcCC
Confidence 88887766221 123457788888888887653
No 388
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.66 E-value=0.35 Score=48.43 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc-cCCHHHHhhcCCEEEEc
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~sDiV~l~ 243 (342)
+-+++|+|+|.+|.++|+.| ...|.+|.++|.......... ++... .+..... ..+ .+.+.++|+|+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s 75 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIIIS 75 (448)
T ss_pred CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence 45899999999999999997 689999999997653211110 11100 0111111 112 3445789998776
Q ss_pred --CCCC-cccc-------cccCH-hHHc-cCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 244 --PVLD-KTTY-------HLINK-ERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 244 --lplt-~~t~-------~li~~-~~l~-~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
+|.+ |+-+ .++++ +.+. .++...+-|-=+.|..--..-+...|+.
T Consensus 76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 3322 2111 23333 2332 3444445555567887777777777875
No 389
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.58 E-value=0.28 Score=41.65 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=51.3
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
...|++|++||+ + ++++++| +.-+.+++++|+++...... . ........++++++||+|+
T Consensus 8 ~~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~~---------------~-~~~~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 8 IGPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGEE---------------P-GDVPDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS---------------C-T-EEGGGHHHHGGG-SEEE
T ss_pred hcCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCCC---------------C-CcCCHHHHHHHHccCCEEE
Confidence 357899999996 1 2367776 57889999999988542110 0 0012346778999999998
Q ss_pred EcCCCCcccccccC---HhHHccCCCCcEEEecC
Q 019328 242 LHPVLDKTTYHLIN---KERLATMKKEAILVNCS 272 (342)
Q Consensus 242 l~lplt~~t~~li~---~~~l~~mk~gailIN~s 272 (342)
+.=. -++| .+.++..++++.++=+|
T Consensus 68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 68 ITGS------TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp EECH------HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred EEee------eeecCCHHHHHHhCccCCeEEEEe
Confidence 7621 1222 34666666565555444
No 390
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.51 E-value=0.42 Score=47.64 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=64.9
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~ 241 (342)
++.++++.|+|+|..|.+.++.| +..|.+|.++|.......... +. . +..........+.+...|+|+
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~---g~~~~~~~~~~~~~~~~d~vv 70 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-E---NVERHTGSLNDEWLLAADLIV 70 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-c---CCEEEeCCCCHHHhcCCCEEE
Confidence 45689999999999999999887 688999999997653211010 10 0 111111111224456788766
Q ss_pred EcCCCCccccc-----------ccCH-hHHcc-CCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 242 LHPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~lplt~~t~~-----------li~~-~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
.. |.-+...- ++.+ +.+.. ++...+-|-=+.|..--..-|...|+.
T Consensus 71 ~s-pgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 71 AS-PGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred EC-CCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 54 32222211 2222 33333 333344455567887777777777775
No 391
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.41 E-value=0.15 Score=41.10 Aligned_cols=87 Identities=11% Similarity=0.209 Sum_probs=51.9
Q ss_pred ccChHHHHHHHHHHhc---CCcEEE-EEcCC--hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEEc
Q 019328 172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (342)
Q Consensus 172 G~G~IG~~vA~~l~~a---~g~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l~ 243 (342)
|+|.||+.+++.+.+. +++++. +++++ ......... .......++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999997432 267765 45666 111111000 01123468999998 99999999
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v 277 (342)
.+..+- .+-..+.++.|.-+|-.+-|.+.
T Consensus 67 t~~~~~-----~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSSEAV-----AEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSCHHH-----HHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCchHH-----HHHHHHHHHCCCeEEEECHHHhh
Confidence 553222 23355667789999988888887
No 392
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.37 E-value=0.64 Score=44.38 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=80.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp 245 (342)
.+|.|+|.|.||.-++-+|+ ..|..|..+-|.+. .+++... +-.+...............-.+.+..+|+|++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 47999999999999999984 66777777776653 2222221 21122111100001112233455668999999986
Q ss_pred CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE-EEeec-CCCCCCCCCCccCCCceEEcCCCCC
Q 019328 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR-VGLDV-FEDEPYMKPGLSEMKNAIVVPHIAS 323 (342)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g-aalDV-~~~EP~~~~~L~~~~nvi~TPHia~ 323 (342)
.. +|... -+......++.+.++-+--|- =.++.+-+.....++.+ ...=. ...+|. .-.......+.+.+..++
T Consensus 77 a~-q~~~a-l~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~g-~v~~~g~g~~~ig~~~~~ 152 (307)
T COG1893 77 AY-QLEEA-LPSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGPG-HVVHTGLGDTVIGELRGG 152 (307)
T ss_pred cc-cHHHH-HHHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCCc-eEEEecCCcEEEccCCCC
Confidence 33 33332 244556677787776544432 33445555555553332 21111 111221 112344567777777776
Q ss_pred Cc
Q 019328 324 AS 325 (342)
Q Consensus 324 ~t 325 (342)
.+
T Consensus 153 ~~ 154 (307)
T COG1893 153 RD 154 (307)
T ss_pred ch
Confidence 55
No 393
>PRK06128 oxidoreductase; Provisional
Probab=92.37 E-value=0.5 Score=44.40 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~ 198 (342)
.+.||++-|.|- |.||+.+|+.|+ ..|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence 478999999997 999999999984 679998876554
No 394
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.13 E-value=0.57 Score=43.30 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.7
Q ss_pred cCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCC
Q 019328 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 163 l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~ 198 (342)
+.||++-|.|-+ .||+++|+.|+ .-|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 689999999997 69999999985 679999988776
No 395
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.12 E-value=0.42 Score=45.74 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=49.3
Q ss_pred CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
.+|+||| .|-.|+++.+.|...=..++.....+... . ..+.++.++++|++++|+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILCL 58 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEECC
Confidence 4799999 59999999999853334566554332111 0 023345667899999999
Q ss_pred CCCcccccccCHhHHccC-CCCcEEEecC
Q 019328 245 VLDKTTYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 245 plt~~t~~li~~~~l~~m-k~gailIN~s 272 (342)
|... ..+....+ +.|..+|+.|
T Consensus 59 p~~~------s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 59 PDDA------AREAVALIDNPATRVIDAS 81 (313)
T ss_pred CHHH------HHHHHHHHHhCCCEEEECC
Confidence 9432 22222222 5688899887
No 396
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.11 E-value=0.16 Score=42.05 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.9
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~ 199 (342)
.++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 579999999999999999985 5576 788888653
No 397
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.06 E-value=0.51 Score=52.11 Aligned_cols=107 Identities=8% Similarity=0.063 Sum_probs=65.7
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH-hhhhh------h----hccCC----C----CCcc
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV-TAYGQ------F----LKANG----E----QPVT 223 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~-~~~~~------~----~~~~~----~----~~~~ 223 (342)
+.-.++.|+|.|+.|+..++.+ .++|++ . .++..-+...... ..... + ..... . ....
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 4457899999999999999986 789888 2 3332211110000 00000 0 00000 0 0000
Q ss_pred ------ccccCC-HHHHhhcCCEEEEcCCCCcccccccCHh-HHccCCCCc----EEEecC
Q 019328 224 ------WKRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS 272 (342)
Q Consensus 224 ------~~~~~~-l~ell~~sDiV~l~lplt~~t~~li~~~-~l~~mk~ga----ilIN~s 272 (342)
-.+... +++.+..+|+++.|+-..+.+-.++.++ ..+.||+|. ++++++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 000112 3578899999999998888888999888 777899998 888876
No 398
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.02 E-value=0.39 Score=40.88 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=24.8
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEE-EcC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL 197 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~ 197 (342)
+|||+|+|+||+.+++.+...-++++.+ +|+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 7999999999999999864446788765 454
No 399
>PLN00106 malate dehydrogenase
Probab=91.94 E-value=0.48 Score=45.58 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=69.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC-Cccc-cccCCHHHHhhcCCE
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV 239 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~sDi 239 (342)
..++|+|+|. |++|..+|..|+. .+.-++..+|..... .+. .+ +.+.... .... ....++.+.++.||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a-~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVA-AD-----VSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeE-ch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 4469999999 9999999998742 344489999986611 100 00 0000110 1111 123456788999999
Q ss_pred EEEcC--CCCc-cccccc---C----H---hHHccCCCCcEEEecCCCcc----CCHHHHHHH--HHcCCccEEE
Q 019328 240 ISLHP--VLDK-TTYHLI---N----K---ERLATMKKEAILVNCSRGPV----IDEVALVEH--LKQNPMFRVG 295 (342)
Q Consensus 240 V~l~l--plt~-~t~~li---~----~---~~l~~mk~gailIN~sRG~~----vd~~aL~~a--L~~g~i~gaa 295 (342)
|+++. |..| .++.-+ | . +.+....|.+++++++---- +....+.+. +...++.|.+
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 99884 3332 233211 1 1 23444568999999876543 333333332 2334566654
No 400
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.93 E-value=0.69 Score=44.80 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=55.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcc-ccccCCHHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~sDiV~l 242 (342)
.|++|.|.|.|.+|...++.+ +.+|++|++.+.+..+..+ ...+++ ..... ......+.++....|+|+-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~vi~~~~~~~~~~~-~~~~~G-------a~~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISSSSNKEDE-AINRLG-------ADSFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcchhhh-HHHhCC-------CcEEEcCCCHHHHHhhcCCCCEEEE
Confidence 588999999999999999984 8999999887766543211 111111 00000 0000122333334688887
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
++.. +.+ -...++.++++..++.++.
T Consensus 254 ~~g~-~~~----~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVSA-VHA----LGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCCC-HHH----HHHHHHHhcCCcEEEEeCC
Confidence 7652 111 1235667777777777653
No 401
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.89 E-value=1.2 Score=41.43 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcC----Cc-------E
Q 019328 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (342)
Q Consensus 123 vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~----g~-------~ 191 (342)
+|=-+++-+|+..|-. |+.|...++.|+|.|.-|-.+|+.|. .. |. +
T Consensus 4 TaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~ 61 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR 61 (255)
T ss_dssp HHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred hHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence 4555677777666543 45799999999999999999999874 44 66 5
Q ss_pred EEEEcCCh-----hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC--CEEEEcCCCCcccccccCHhHHccCCC
Q 019328 192 LIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK 264 (342)
Q Consensus 192 V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--DiV~l~lplt~~t~~li~~~~l~~mk~ 264 (342)
++.+|+.- ++....+...| .+.... . ....+|.|+++.+ |+++=.- ...+.|+++.++.|.+
T Consensus 62 i~lvD~~Gll~~~r~~l~~~~~~~---a~~~~~-~---~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~ 130 (255)
T PF03949_consen 62 IWLVDSKGLLTDDREDLNPHKKPF---ARKTNP-E---KDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK 130 (255)
T ss_dssp EEEEETTEEEBTTTSSHSHHHHHH---HBSSST-T---T--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred EEEEeccceEeccCccCChhhhhh---hccCcc-c---ccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence 88888762 11111122222 111111 1 1125999999999 9987662 2568899999999988
Q ss_pred ---CcEEEecCCCccCCHHHHHHHHHcCC---ccEEEeecCCCCCCCC-------CCccCCCceEEcCCCC
Q 019328 265 ---EAILVNCSRGPVIDEVALVEHLKQNP---MFRVGLDVFEDEPYMK-------PGLSEMKNAIVVPHIA 322 (342)
Q Consensus 265 ---gailIN~sRG~~vd~~aL~~aL~~g~---i~gaalDV~~~EP~~~-------~~L~~~~nvi~TPHia 322 (342)
.+++.=.|.-..--|-.-.+|.+-+. |.+.| -|.++ ...-+..|+++-|=++
T Consensus 131 ~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtG------Spf~pv~~~Gr~~~p~Q~NN~~iFPGig 195 (255)
T PF03949_consen 131 HNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATG------SPFPPVEYNGRSDYPNQCNNSYIFPGIG 195 (255)
T ss_dssp HSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEES------S----EEETSCEESSCE-SGGGTHHHHH
T ss_pred cCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecC------CccCCeeeCCeEEecCCCCeeEeeccce
Confidence 89999999877643444444444332 22322 22111 1234567888888665
No 402
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=91.89 E-value=0.71 Score=44.38 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=90.3
Q ss_pred ccCCCEEEEEccChHHHHHHHHHHh------cCCcE--EEEEcCChhhHHHHHHhhhhhh-----hccCCCCCccccccC
Q 019328 162 LLKGQTVGVIGAGRIGSAYARMMVE------GFKMN--LIYYDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRAS 228 (342)
Q Consensus 162 ~l~gktvGIiG~G~IG~~vA~~l~~------a~g~~--V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 228 (342)
+-.-++|+|||.|+=|..+|+.++. .|..+ .|.|+-....+.+...+...+. .-.....+.......
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 3445789999999999999998642 23333 4444322211101111111000 000112233334467
Q ss_pred CHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC---------HHHHHHHHHc--CCccEE--E
Q 019328 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---------EVALVEHLKQ--NPMFRV--G 295 (342)
Q Consensus 229 ~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd---------~~aL~~aL~~--g~i~ga--a 295 (342)
++.+.+.+||+++..+|- +-..-|-++...+.||++..|...-|=-+. .+-+-++|.- +-+.|| |
T Consensus 98 dl~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA 175 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA 175 (372)
T ss_pred hHHHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence 899999999999999993 323334577888899999999887663322 2233344432 123333 2
Q ss_pred eecCCCCCCC----------CC----CccCCCceEEcCCCCCCcHH
Q 019328 296 LDVFEDEPYM----------KP----GLSEMKNAIVVPHIASASKW 327 (342)
Q Consensus 296 lDV~~~EP~~----------~~----~L~~~~nvi~TPHia~~t~~ 327 (342)
..|...++.. .+ .|++.|+..++.---..+.|
T Consensus 176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VE 221 (372)
T KOG2711|consen 176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVE 221 (372)
T ss_pred HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhH
Confidence 2444444421 11 37788888887754444433
No 403
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=91.87 E-value=0.54 Score=44.70 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=54.2
Q ss_pred EEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEEEcCC--
Q 019328 170 VIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHPV-- 245 (342)
Q Consensus 170 IiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~l~lp-- 245 (342)
|||.|.+|..+|..|+ +.+.-++..+|.+.......-.| . .+.. ..........+-.+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-l----~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~ 75 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD-L----QHAASFLPTPKKIRSGDYSDCKDADLVVITAGAP 75 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH-H----HHhhcccCCCeEEecCCHHHHCCCCEEEECCCCC
Confidence 6899999999999864 23444799999876432111111 1 1110 000000111233567899999999743
Q ss_pred CCc-cccc-cc--C-------HhHHccCCCCcEEEecC
Q 019328 246 LDK-TTYH-LI--N-------KERLATMKKEAILVNCS 272 (342)
Q Consensus 246 lt~-~t~~-li--~-------~~~l~~mk~gailIN~s 272 (342)
..| .+|. ++ | .+.+....|.+++|+++
T Consensus 76 rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 76 QKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 222 1231 11 1 12344457899999987
No 404
>PRK07877 hypothetical protein; Provisional
Probab=91.86 E-value=0.31 Score=51.75 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=58.7
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhh-----HHHHHHhhhh--------hhhccCC-CCCccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQAT-----RLEKFVTAYG--------QFLKANG-EQPVTW 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~-----~~~~~~~~~~--------~~~~~~~-~~~~~~ 224 (342)
..|.+++|+|+|+| +|..+|..|+ ..|. ++..+|...-. +.-......| ..+..-. ...+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 46999999999999 9999999985 4552 67777644210 0000000000 0000000 000100
Q ss_pred ----cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328 225 ----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 225 ----~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~ 261 (342)
....+++++++.+|+|+-|+. +-+++.++|+...++
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 012468889999999999998 578999998776654
No 405
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.76 E-value=0.32 Score=36.29 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.5
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
++.|||-|.+|-++|..| ..+|.+|..+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 588999999999999998 689999999988754
No 406
>PRK15076 alpha-galactosidase; Provisional
Probab=91.74 E-value=0.7 Score=46.28 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=46.2
Q ss_pred CEEEEEccChHHHHHHH--HHH--hcC-CcEEEEEcCChhhHH--HHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~--~l~--~a~-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
.+|+|||.|.+|...+- .++ .++ +.+|..||..++... ...... .....+ .........++.+.++.||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~---~~~~~~-~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK---LAESLG-ASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH---HHHhcC-CCeEEEEECCHHHHhCCCC
Confidence 48999999999955433 222 344 458999999875422 111111 111111 1222333568889999999
Q ss_pred EEEEcCCC
Q 019328 239 VISLHPVL 246 (342)
Q Consensus 239 iV~l~lpl 246 (342)
+|+.++-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99988554
No 407
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.60 E-value=0.88 Score=43.65 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=56.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI 240 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV 240 (342)
.|.+|.|+|.|.||...++.+++.+| .+|++.++++.+.... ..+ + .. ...+++.+ ..|+|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a--~~~-------~-----~~--~~~~~~~~~~g~d~v 226 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF--SFA-------D-----ET--YLIDDIPEDLAVDHA 226 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH--hhc-------C-----ce--eehhhhhhccCCcEE
Confidence 48899999999999999887532354 6899999876542111 111 1 00 01112222 37999
Q ss_pred EEcCCC--CcccccccCHhHHccCCCCcEEEecCC
Q 019328 241 SLHPVL--DKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~lpl--t~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
+-++.. ++.+ -...++.++++..++.++-
T Consensus 227 iD~~G~~~~~~~----~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVGGRGSQSA----INQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCCCCccHHH----HHHHHHhCcCCcEEEEEee
Confidence 888763 1111 1356788999999988764
No 408
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.60 E-value=0.83 Score=44.29 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=58.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHh---h-cC
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL---R-EA 237 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell---~-~s 237 (342)
.|.+|.|.|.|.+|...++.+ +..|+ +|++.++++.+.. +...++. .........++ +++. . ..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r~~--~a~~~Ga-------~~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDKLA--LARELGA-------TATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHHHH--HHHHcCC-------ceEeCCCchhHHHHHHHHhCCCC
Confidence 478999999999999999984 89999 6999988765432 2122221 00000001122 1221 1 37
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
|+|+-++...+ + -...++.++++..++.++-
T Consensus 261 d~vid~~G~~~-~----~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 261 DYAFEMAGSVP-A----LETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CEEEECCCChH-H----HHHHHHHHhcCCEEEEEcc
Confidence 88888875222 1 2345777889989888764
No 409
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.58 E-value=0.23 Score=47.47 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=47.2
Q ss_pred CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC-ccc-ccc-CCHHHHhhcCCEEE
Q 019328 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTW-KRA-SSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~l~ell~~sDiV~ 241 (342)
++|+|||.|.||+.+|-+|. +.++-++..||...... +..... +.+..... ... ... .+ -+.++.||+|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~-~G~a~D----L~~~~~~~~~~~~i~~~~~-y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA-EGVALD----LSHAAAPLGSDVKITGDGD-YEDLKGADIVV 74 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc-cchhcc----hhhcchhccCceEEecCCC-hhhhcCCCEEE
Confidence 47999999999999998874 35666899999883321 110000 11101000 000 111 12 45678999999
Q ss_pred EcC--CCCcc-cc
Q 019328 242 LHP--VLDKT-TY 251 (342)
Q Consensus 242 l~l--plt~~-t~ 251 (342)
++. |..|- ||
T Consensus 75 itAG~prKpGmtR 87 (313)
T COG0039 75 ITAGVPRKPGMTR 87 (313)
T ss_pred EeCCCCCCCCCCH
Confidence 986 66554 44
No 410
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=91.58 E-value=2.2 Score=35.65 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328 179 AYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255 (342)
Q Consensus 179 ~vA~~l~~a~g~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~ 255 (342)
..+++| ...|.+|++=.-.-.. ..++|.+ .++.-..+-++++++||+|+-.=|.+
T Consensus 18 ~~v~~L-~~~G~~V~VE~gaG~~a~fsD~~Y~~-------------aGA~I~~~~~ev~~~adiIl~v~~p~-------- 75 (136)
T PF05222_consen 18 EDVKKL-VKLGHEVLVESGAGEGAGFSDEEYEE-------------AGAEIVSRAEEVYSDADIILKVKPPS-------- 75 (136)
T ss_dssp HHHHHH-HHTTSEEEEETTTTGGGTB-HHHHHH-------------TTEEEESSHHHHHTTSSEEEESS-----------
T ss_pred HHHHHH-HhCCCEEEEECCCCCcCcccHHHHhh-------------CCcEEecCchhhcccCCEEEEECCCC--------
Confidence 345565 4669999875433211 1112211 22333456679999999998876643
Q ss_pred HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (342)
Q Consensus 256 ~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 301 (342)
.+.++.|++|.++|-...-. ....+++.|.++++...++|-...
T Consensus 76 ~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 76 EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 56888999999999776554 588999999999999999887655
No 411
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.57 E-value=0.55 Score=44.87 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~ 243 (342)
.|.+|.|.|.|.+|...++. ++.+|++|++.+++..+.. +..+++. .... ...++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~~--~a~~~Ga-------~~vi----~~~~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAARR--LALALGA-------ASAG----GAYDTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHHH--HHHHhCC-------ceec----cccccCcccceEEEEC
Confidence 47899999999999998887 5899999999988765432 2222221 0000 0000111235776666
Q ss_pred CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.... + .-...++.++++..++.++.
T Consensus 231 ~~~~-~----~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APAG-G----LVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCcH-H----HHHHHHHhhCCCcEEEEEec
Confidence 5432 2 23457788999999988774
No 412
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=91.51 E-value=0.37 Score=44.57 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~ 256 (342)
|..+|-.++ ..|.+|+..+|+.+-..++..+.. .+ .+....++-.+..+.+.+.++..|....|-++ -+
T Consensus 33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~~v----ed-----AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~I-ar 101 (340)
T COG4007 33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWKRV----ED-----AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGI-AR 101 (340)
T ss_pred chHHHHHHH-HcCCcEEeecCCccccCHHHHHHH----Hh-----cCcEEecCchhhhhcceEEEEecccchhhHHH-HH
Confidence 567777764 669999999999765433322211 12 22333455667889999999999999888874 57
Q ss_pred hHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328 257 ERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 257 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL 286 (342)
+.+.+++.|+++.||..-+.+ .|+.-|
T Consensus 102 ei~~hvpEgAVicnTCT~sp~---vLy~~L 128 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSPV---VLYYSL 128 (340)
T ss_pred HHHhhCcCCcEecccccCchh---HHHHHh
Confidence 889999999999999987754 566666
No 413
>PLN02214 cinnamoyl-CoA reductase
Probab=91.44 E-value=0.62 Score=44.82 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=49.3
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
.+.++++.|.|. |.||+.+++.| ..-|.+|.+.+|...................-...........+++++++.+|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 467899999998 99999999998 4679999998886542111100000000000000000111234577888899998
Q ss_pred EEcCC
Q 019328 241 SLHPV 245 (342)
Q Consensus 241 ~l~lp 245 (342)
+.+..
T Consensus 86 ih~A~ 90 (342)
T PLN02214 86 FHTAS 90 (342)
T ss_pred EEecC
Confidence 77764
No 414
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.41 E-value=0.78 Score=44.06 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
.|.+|.|.|.|.||..+++.+ ++.|.+|++.++++.+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence 478999999999999999985 8999999999887654
No 415
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.32 E-value=0.52 Score=42.83 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
.+.||++.|.|- |.||+.+|+.|+ ..|++|+..+|+..+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~~ 46 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPAK 46 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 578999999996 999999999984 679999999987643
No 416
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=91.25 E-value=0.63 Score=44.13 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=50.0
Q ss_pred ccCCCEEEEEc---cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~l~gktvGIiG---~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
.+.|++|+|+| +|+.-++.++.| +.||++|..+.|..-...+...++. .. .+..+......+|+++++|
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l----~~---~~~~~~~~~~~e~~i~~~D 226 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL----EE---KGGVVVEHDSDEEVIEEAD 226 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH----hh---cCceEEEecchhhhhccCC
Confidence 38999999999 799999999998 7999999999986422111111111 11 1111233455666999999
Q ss_pred EEEEc
Q 019328 239 VISLH 243 (342)
Q Consensus 239 iV~l~ 243 (342)
++.+.
T Consensus 227 Vl~~l 231 (316)
T COG0540 227 VLYML 231 (316)
T ss_pred EEEee
Confidence 99654
No 417
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=91.19 E-value=0.7 Score=43.33 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~ 201 (342)
++++.|+|.|..+++++-.| ...|+ +|.+++|+.++
T Consensus 122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence 46899999999999999997 57787 59999998754
No 418
>PRK12742 oxidoreductase; Provisional
Probab=91.18 E-value=1.4 Score=39.27 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.2
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~ 198 (342)
.+.||++-|.|- |.||+.+|+.| ...|++|+...+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 467999999996 99999999998 5789998876543
No 419
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.15 E-value=0.71 Score=44.45 Aligned_cols=108 Identities=24% Similarity=0.211 Sum_probs=57.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcCCc-------EEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~g~-------~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 236 (342)
+|+|+|. |.+|..+|..|+ ..+. ++..+|...... .+..... +.+.. ..........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~~a~g~~~D----l~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMKVLEGVVME----LMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCcccccceeEee----hhcccchhcCceeccCChHHHhCC
Confidence 5899999 999999999874 3222 588999854321 1110000 00000 000001111245678899
Q ss_pred CCEEEEcC--CCCc-cccc-cc--C-------HhHHccC-CCCcEEEecCCCccCCHHH
Q 019328 237 ADVISLHP--VLDK-TTYH-LI--N-------KERLATM-KKEAILVNCSRGPVIDEVA 281 (342)
Q Consensus 237 sDiV~l~l--plt~-~t~~-li--~-------~~~l~~m-k~gailIN~sRG~~vd~~a 281 (342)
||+|++.. |..+ +|+. ++ | ...+... +|.+++|+++ .++|.-.
T Consensus 76 aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 76 VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99999874 3322 2221 11 1 1234444 5788888876 4454443
No 420
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.10 E-value=1.1 Score=43.22 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=57.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH----HHHhh--c
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E 236 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~ 236 (342)
.|.+|.|.|.|.+|...++.+ +.+|++ |++.+++..+.. +..+++ ....-.....+. .++.. .
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~~~--~~~~~G-------a~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRKLE--WAREFG-------ATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HHHHcC-------CceEEcCCCcCHHHHHHHHhCCCC
Confidence 478999999999999999984 899985 988888765422 112221 100000011122 22222 3
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.|+|+-++.. +++ + ...+..++++..++.++-
T Consensus 246 ~d~vid~~g~-~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVGR-PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCCC-HHH---H-HHHHHHhccCCEEEEECC
Confidence 6888877652 222 1 345677888888888874
No 421
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.99 E-value=0.94 Score=41.46 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
+++++-|.|. |.||+.+|+.+++.-|++|+..+|+.++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP 45 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence 4778999986 8999999999753335899999987654
No 422
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.99 E-value=1 Score=42.87 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC-HHHHhhcCCEEEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~sDiV~l 242 (342)
.|.++.|.|.|.+|+.+++.+ +++|++|++.+++.+... +...++ ....-.....+ ..+.-...|+++-
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~--~~~~~g-------~~~vi~~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKKE--DALKLG-------ADEFIATKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHHHcC-------CcEEecCcchhhhhhccCCceEEEE
Confidence 467999999999999999985 899999999988764321 111121 00000000001 1222356788888
Q ss_pred cCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
+.+... ...+.++.++++..+++++..
T Consensus 239 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~~ 265 (337)
T cd05283 239 TVSASH-----DLDPYLSLLKPGGTLVLVGAP 265 (337)
T ss_pred CCCCcc-----hHHHHHHHhcCCCEEEEEecc
Confidence 877421 125567888888888888653
No 423
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.93 E-value=3.3 Score=34.61 Aligned_cols=112 Identities=16% Similarity=-0.053 Sum_probs=67.3
Q ss_pred CCCeEEEEeCCCCch------HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-CCccEEEecCC----cCccHHHHHH
Q 019328 13 NGKYRVVSTKPMPGT------RWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLT----EDWGETLFAA 81 (342)
Q Consensus 13 ~~~~kvl~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~----~~~~~~~~~~ 81 (342)
|++++||+...-.+. -....|+..|+++.+.- ...+.+++.+.+. .++|++.++.. ...-+++++.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG---~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~ 77 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG---VMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREK 77 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC---CCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHH
Confidence 456777765433331 13346778899987542 2357888887654 35888876532 2223455666
Q ss_pred hhccCC-ce-EEEccccc-----CccChhHHHhCCceEEcCCCCCchhHHHHH
Q 019328 82 LSRAGG-KA-FSNMAVGY-----NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (342)
Q Consensus 82 ~~~l~~-k~-i~~~g~G~-----d~id~~~a~~~gI~v~n~p~~~~~~vAE~a 127 (342)
+...++ +. |..-|.-. ...+.+.+++.|+..+..|+...+.++++.
T Consensus 78 L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l 130 (137)
T PRK02261 78 CIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDL 130 (137)
T ss_pred HHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 655433 21 23333221 234567899999999999998777777664
No 424
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.92 E-value=0.33 Score=46.25 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=34.5
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR 202 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~ 202 (342)
=.|.|++|.|+|.+|.++++-+ ++.|+ +|++.|-++++-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Ga-ka~GAsrIIgvDiN~~Kf 230 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGA-KAAGASRIIGVDINPDKF 230 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhH-HhcCcccEEEEecCHHHH
Confidence 4689999999999999999984 88897 799999998753
No 425
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.83 E-value=1.8 Score=40.91 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=69.7
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
|++++|||-=.=-..+++.| ...|++|..|.-..... +. .+.....+.++.++++|+|++-+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------GF--TGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------cc--ccceeecchhhhhccCCEEEECC
Confidence 68999999888888899998 57898877664321100 00 12223445666699999999999
Q ss_pred CCCccccc----------ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328 245 VLDKTTYH----------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (342)
Q Consensus 245 plt~~t~~----------li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga 294 (342)
|.+.+.-. -++++.++.|+++++ +-++. +..++-++.++..|.-.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVKLI 117 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCeEE
Confidence 97766321 246889999997655 33443 34555556665555433
No 426
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=90.60 E-value=1.2 Score=45.69 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=65.6
Q ss_pred ccCCCEEEEEcc---ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
.+.|++|+++|= |+..++++..+ ..|| |+|....|..-...+.+.+. ++. .+.......++++.+++|
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~---~G~~v~i~~d~~eav~~A 242 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKK---NGFEVRIFSSIEEYLSQK 242 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHH---cCCeEEEEcCHHHHhccC
Confidence 478999999998 58899999986 5798 99998887532111111111 111 112233457999999999
Q ss_pred CEE--EE-------cCCCC-----ccc--ccccCHhHHccCCCCcEEEecC
Q 019328 238 DVI--SL-------HPVLD-----KTT--YHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 238 DiV--~l-------~lplt-----~~t--~~li~~~~l~~mk~gailIN~s 272 (342)
|+. .. .+... .+. .-.++++.++.+|++++|.-+.
T Consensus 243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 952 22 22211 011 2235889999999999987763
No 427
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.58 E-value=1.2 Score=43.02 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=60.0
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~sDiV~ 241 (342)
..|.++.|.|.|.+|..+++.+ +..|++|++.+++.++... ....++. ... .......+.++....|+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~-~~~~~Ga-------~~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSDKKREE-ALEHLGA-------DDYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHHhcCC-------cEEecCCChHHHHHhcCCCcEEE
Confidence 3578999999999999999984 8999999888876543221 1111221 000 0000011233334579998
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
-++.... .....++.++++..++.++.
T Consensus 250 d~~g~~~-----~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DTVPVFH-----PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ECCCchH-----HHHHHHHHhccCCEEEEECC
Confidence 8876321 12346778899999988874
No 428
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=90.56 E-value=1 Score=44.56 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=49.5
Q ss_pred ccCCCEEEEEcc-----C---hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328 162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (342)
Q Consensus 162 ~l~gktvGIiG~-----G---~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (342)
.+.|+||+|+|- | ++.++++..+ ..||++|.+..|..-...+...+......+.. +.......++++.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~---G~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKAS---GGSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence 478999999985 5 5668888876 58999999998863110111111000000111 1123345799999
Q ss_pred hhcCCEEEEcC
Q 019328 234 LREADVISLHP 244 (342)
Q Consensus 234 l~~sDiV~l~l 244 (342)
++++|+|..-.
T Consensus 260 v~~aDvVYtd~ 270 (395)
T PRK07200 260 FKDADIVYPKS 270 (395)
T ss_pred hCCCCEEEEcC
Confidence 99999998763
No 429
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.54 E-value=1.4 Score=43.84 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=67.3
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC--
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP-- 244 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l-- 244 (342)
++.|||+|.+|.++|+.| +..|.+|.++|............ .++.. .+.....-.+ .+.+..+|+|+..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~--~gi~~~~g~~-~~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLN--EGSVLHTGLH-LEDLNNADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhc--cCcEEEecCc-hHHhccCCEEEECCCC
Confidence 478999999999999997 68999999999765432111000 00000 0111111123 34567899987763
Q ss_pred CC-Ccccc-------cccCHh-HH-ccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328 245 VL-DKTTY-------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 245 pl-t~~t~-------~li~~~-~l-~~mk~gailIN~sRG~~vd~~aL~~aL~~g~ 290 (342)
|. +|+-. .++.+. .+ ..++...+-|.=+.|..--..-+...|+...
T Consensus 73 ~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 73 PPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 32 22211 133332 22 3344445666667898888888888887643
No 430
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.52 E-value=1.4 Score=41.90 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=59.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-----hcC
Q 019328 165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (342)
Q Consensus 165 gktvGIiG~-G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~s 237 (342)
|.+|.|.|. |.+|+..++.+ +.+|+ +|++.+++.++... ..+.++ ..........++.+.+ ...
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlA-k~~G~~~Vi~~~~s~~~~~~-~~~~lG-------a~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEKCQL-LKSELG-------FDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHH-HHHhcC-------CcEEEECCCCCHHHHHHHHCCCCc
Confidence 489999998 99999999984 89999 89998877653211 111121 1111011112333322 247
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
|+|+-++.. + . + .+.++.++++..+|.++.
T Consensus 226 d~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 226 DVYFDNVGG-E---I-S-DTVISQMNENSHIILCGQ 255 (345)
T ss_pred eEEEECCCc-H---H-H-HHHHHHhccCCEEEEEee
Confidence 888877662 1 1 2 567888999999998763
No 431
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.43 E-value=0.62 Score=42.40 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.+.||++-|.|- |.||+.+|++| ...|++|+..+++..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 578999999986 79999999998 578999999988654
No 432
>PRK08324 short chain dehydrogenase; Validated
Probab=90.42 E-value=0.72 Score=48.88 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=34.9
Q ss_pred cccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 161 ~~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
..+.||++-|.| .|.||+.+|+.| ...|++|+..+++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 467899999999 599999999998 5789999999998754
No 433
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.36 E-value=6 Score=33.40 Aligned_cols=118 Identities=16% Similarity=0.029 Sum_probs=76.8
Q ss_pred CCCeEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHh-cCCccEEEecCC----cCccHHHHHH
Q 019328 13 NGKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALI-GDKCDGVIGQLT----EDWGETLFAA 81 (342)
Q Consensus 13 ~~~~kvl~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~----~~~~~~~~~~ 81 (342)
..++||++.+.-.+ .-....|++.|+++.... ...+++|+.+.. ..++|++.+++. ...-+.+.++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g---~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~ 86 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG---LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA 86 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC---CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence 35788887654222 223467888899886432 234677777554 556898876542 2334567778
Q ss_pred hhccCCceEEEcccccC-ccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHH
Q 019328 82 LSRAGGKAFSNMAVGYN-NVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133 (342)
Q Consensus 82 ~~~l~~k~i~~~g~G~d-~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~ 133 (342)
|...|...|....-|.= -=|....++.|+.=.-.|+-+...+++..+..+-.
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 88888877764444432 23667789999999999998777776666655543
No 434
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.30 E-value=0.9 Score=45.48 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=65.6
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc--ccC---CHHHHhhcCCEEE
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RAS---SMDEVLREADVIS 241 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~l~ell~~sDiV~ 241 (342)
+|.|||+|..|.+.|+.| ...|.+|.++|+...+....... .+...+ .... ... .+.+.+.+.|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~g~~~~~~~~~~~~~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEG---ITVKLGKPLELESFQPWLDQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcC---CEEEECCccchhhhhHHhhcCCEEE
Confidence 689999999999999987 68899999999876443211000 011111 1111 011 1235678899988
Q ss_pred EcCCCCcccc----------cccCHh-H-HccCCC-CcEEEecCCCccCCHHHHHHHHHc
Q 019328 242 LHPVLDKTTY----------HLINKE-R-LATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~lplt~~t~----------~li~~~-~-l~~mk~-gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
......++.. .++.+- . ...+++ ..+-|--+.|..--..-|...|+.
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 74 VSPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8533323211 123322 2 233433 345555567887777777777875
No 435
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.27 E-value=1.1 Score=43.71 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.|.+|.|.|.|.+|...++. ++++|++|++.+++.+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSE 213 (375)
T ss_pred CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChH
Confidence 58899999999999999998 4899999999887654
No 436
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.27 E-value=0.65 Score=44.04 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=45.0
Q ss_pred CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
++|.|.| .|.||+.+++.| ..-|.+|.+.+|+..+... ....+..... .......++.++++.+|+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~~--l~~~~v~~v~-----~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKASF--LKEWGAELVY-----GDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhhh--HhhcCCEEEE-----CCCCCHHHHHHHHCCCCEEEECC
Confidence 3789999 599999999997 4679999999987543210 0000000000 00112245778899999988765
Q ss_pred C
Q 019328 245 V 245 (342)
Q Consensus 245 p 245 (342)
+
T Consensus 73 ~ 73 (317)
T CHL00194 73 T 73 (317)
T ss_pred C
Confidence 4
No 437
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.16 E-value=1.8 Score=41.17 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVI 240 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV 240 (342)
.|.+|.|.|.|.+|+.+++.+ +++|.+|++.+++.+.. ++..+++. ...-.....++.+.+ ...|++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~~~--~~~~~~g~-------~~~i~~~~~~~~~~~~~~~~~d~v 232 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSDKA--DLARKLGA-------HHYIDTSKEDVAEALQELGGAKLI 232 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChHHH--HHHHHcCC-------cEEecCCCccHHHHHHhcCCCCEE
Confidence 478999999999999999985 89999999998875432 11122221 000000111222211 346888
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
+-+..... .-...++.++++..+++++.
T Consensus 233 i~~~g~~~-----~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 233 LATAPNAK-----AISALVGGLAPRGKLLILGA 260 (333)
T ss_pred EECCCchH-----HHHHHHHHcccCCEEEEEec
Confidence 76643111 22446778888888888764
No 438
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.10 E-value=0.82 Score=41.12 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
++.++++.|.|. |.||+.+++.| ...|++|++.+|+...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 467899999996 89999999998 4679999999998653
No 439
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.09 E-value=1.2 Score=41.94 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=60.1
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH--HH--hhcC
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA 237 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~s 237 (342)
..|.+|.|+|.|.+|+.+++.+ ++.|++ |++.+++.+... +..+++. .........++. .. -...
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~--~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKLE--LAKKLGA-------TETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHHhCC-------eEEecCCCCCHHHHHHhcCCCC
Confidence 3578999999999999999985 899998 888888765421 1111110 000000001111 11 2457
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
|+++-+++... ...+.++.|+++..+++++...
T Consensus 228 d~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 228 DVVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred cEEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence 99988775221 2345678888999999887654
No 440
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.95 E-value=1.3 Score=42.93 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=25.6
Q ss_pred CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~ 198 (342)
.+|+|+| .|.+|+.+++.|...-.+++.++..+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 6899998 89999999999853334688877433
No 441
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.91 Score=42.64 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=35.4
Q ss_pred ccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 160 g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
+..+.|+++-|.|. |.||+.+|+.|+ .-|++|+..+|+.+.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~~ 76 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARREDL 76 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence 45789999999997 999999999984 679999999998643
No 442
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.92 E-value=2.4 Score=38.33 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
++.||++-|.|. |.||..+|+.|+ ..|++|+..+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~-~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA-AKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 588999999996 999999999984 67999999998754
No 443
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.79 E-value=0.78 Score=41.53 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
.+.||++-|.|. |.||+.+|++|+ .-|++|+..+|+.+.
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 578999999997 899999999984 679999999998653
No 444
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.76 E-value=0.91 Score=46.95 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=32.8
Q ss_pred cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
-.|+++.|.|. |.||+.+++.| ...|++|.+++|+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 46889999997 99999999998 4779999999988654
No 445
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.66 E-value=1.2 Score=44.47 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=64.5
Q ss_pred cCC-CEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-ccCCHHHHhhcCCE
Q 019328 163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (342)
Q Consensus 163 l~g-ktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDi 239 (342)
+.| +++.|+|+|..|.+.++.|.+.-| ++|.++|.......... ++. +.... ...+. +.+.++|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~~----g~~~~~g~~~~-~~~~~~d~ 71 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LPE----DVELHSGGWNL-EWLLEADL 71 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hhc----CCEEEeCCCCh-HHhccCCE
Confidence 445 789999999999999999754444 89999997643211110 110 11111 11132 34578998
Q ss_pred EEEcC--CC-Ccccc-------cccCH-hHH-ccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328 240 ISLHP--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 240 V~l~l--pl-t~~t~-------~li~~-~~l-~~mk~gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
|+..- |. +|+-+ .++.+ +.+ ..++...+-|-=+-|..--..-|...|+.
T Consensus 72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 87763 32 22211 13333 232 23444445555567887777777777775
No 446
>PRK08328 hypothetical protein; Provisional
Probab=89.61 E-value=0.46 Score=43.37 Aligned_cols=107 Identities=23% Similarity=0.252 Sum_probs=61.3
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH---Hhhhhh---------hhcc-CCCCCcc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF---VTAYGQ---------FLKA-NGEQPVT 223 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~---~~---~~~~~~---------~~~~-~~~~~~~ 223 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-.... .+ .+..+. .++. .....+.
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~ 101 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIE 101 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEE
Confidence 4699999999999999999999985 6676 67788855311000 00 000000 0000 0000000
Q ss_pred ----ccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 224 ----WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 224 ----~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
.....+++++++++|+|+.|+.. .+++.++++-..+ .+.-+|+.+
T Consensus 102 ~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~---~~ip~i~g~ 150 (231)
T PRK08328 102 TFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK---KGIPLVHGA 150 (231)
T ss_pred EEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH---cCCCEEEEe
Confidence 00123466788999999998874 6678777654333 344466544
No 447
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.57 E-value=0.85 Score=43.89 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=56.0
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcC-------CcEEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGF-------KMNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~-------g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 236 (342)
+|+|+|. |.+|..++..|. .. +.++..+|+..... ....... +.+.. ..........++.+.++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~D----l~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVME----LQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceeee----hhhccccccCCceecCCHHHHhCC
Confidence 6999999 999999999874 32 24899999854321 1110000 00000 000011113567788999
Q ss_pred CCEEEEcCCC--Cc-cccc-cc--CH-------hHHccC-CCCcEEEecC
Q 019328 237 ADVISLHPVL--DK-TTYH-LI--NK-------ERLATM-KKEAILVNCS 272 (342)
Q Consensus 237 sDiV~l~lpl--t~-~t~~-li--~~-------~~l~~m-k~gailIN~s 272 (342)
||+|+.+.-. .+ +++. ++ |. ..+... +|++++|.++
T Consensus 79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999887432 22 2221 11 11 233444 5788898887
No 448
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.57 E-value=1.2 Score=42.87 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=58.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcCCc-------EEEEEcCChhh-HHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhhc
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLRE 236 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~g~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~ 236 (342)
+|+|||. |.+|..+|-.|. ..|. ++..+|..... ........ +.+...... ...-..+..+.+++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D----l~~~~~~~~~~~~i~~~~~~~~~d 79 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAME----LEDCAFPLLAGVVATTDPEEAFKD 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHH----HhhccccccCCcEEecChHHHhCC
Confidence 7999998 999999998763 3343 79999985421 01111110 011110000 01111355678899
Q ss_pred CCEEEEcCC--CCc-cccccc---CH-------hHHccCCC-CcEEEecCCCccCCHH
Q 019328 237 ADVISLHPV--LDK-TTYHLI---NK-------ERLATMKK-EAILVNCSRGPVIDEV 280 (342)
Q Consensus 237 sDiV~l~lp--lt~-~t~~li---~~-------~~l~~mk~-gailIN~sRG~~vd~~ 280 (342)
||+|+++.- ..+ +||.-+ |. ..+....| .+++|.++ .++|.-
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~ 135 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTN 135 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence 999998843 222 233221 11 12333444 88999886 444443
No 449
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.55 E-value=1.5 Score=42.48 Aligned_cols=93 Identities=20% Similarity=0.147 Sum_probs=58.2
Q ss_pred EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccC-C----HHHHhh--cCC
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVLR--EAD 238 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell~--~sD 238 (342)
++.|+|.|.||...++.+ +.+|+ +|++.|+++....-+ .++. + ......... + ..++.. .+|
T Consensus 171 ~V~V~GaGpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl~~A--~~~~------g-~~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 171 TVVVVGAGPIGLLAIALA-KLLGASVVIVVDRSPERLELA--KEAG------G-ADVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred EEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHHHHH--HHhC------C-CeEeecCccccHHHHHHHHhCCCCCC
Confidence 999999999999998874 78886 688888887643211 1100 0 000000001 1 112222 489
Q ss_pred EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
+++-|.. ++. .-...++..+++..++.++-.
T Consensus 241 ~vie~~G-~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 241 VVIEAVG-SPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEEECCC-CHH----HHHHHHHHhcCCCEEEEEecc
Confidence 9999988 332 224577888999998888754
No 450
>PLN02740 Alcohol dehydrogenase-like
Probab=89.54 E-value=1.8 Score=42.16 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=32.6
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~ 201 (342)
-.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~r 235 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPEK 235 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChHH
Confidence 3588999999999999999985 89999 69999887654
No 451
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.51 E-value=0.92 Score=43.86 Aligned_cols=130 Identities=16% Similarity=0.241 Sum_probs=64.0
Q ss_pred CEEEEEccChHHHHHHHHHHh-------cCC--cEEEEE-cCChhh------HHHHHHhhhhhhhccCCC-CCcc---cc
Q 019328 166 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQAT------RLEKFVTAYGQFLKANGE-QPVT---WK 225 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~-------a~g--~~V~~~-d~~~~~------~~~~~~~~~~~~~~~~~~-~~~~---~~ 225 (342)
.+|+|+|+|++|+.+++.|.+ .+| .+|.+. |++... ..++.. ++ .+..+. .... ..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~-~~---~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAK-EV---KENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHH-Hh---hhccCchhhccccccc
Confidence 489999999999999987632 145 676644 432110 000000 00 000000 0000 00
Q ss_pred ccCCHHHHh--hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc-cEEEeecCCC
Q 019328 226 RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM-FRVGLDVFED 301 (342)
Q Consensus 226 ~~~~l~ell--~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i-~gaalDV~~~ 301 (342)
...++++++ ..+|+|+-+.+.. .. ..-..+.++.|.-+|-..-|.+- ..+.|.+..++... ..+.--|--.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a----~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~G 153 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NA----HEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAG 153 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HH----HHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEecccccc
Confidence 012677887 4799999777522 11 12233445666666655555432 45566665554332 2222334444
Q ss_pred CCC
Q 019328 302 EPY 304 (342)
Q Consensus 302 EP~ 304 (342)
-|.
T Consensus 154 iPi 156 (336)
T PRK08374 154 TPI 156 (336)
T ss_pred CCc
Confidence 443
No 452
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.42 E-value=0.52 Score=47.48 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=65.1
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l 242 (342)
-.||+|+|+|+|.-|.++|+.| +. |++|+++|........ . ... .. .. ... ....+.+.++|+|+.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~~-~-~~~----~~---~~--~~~-~~~~~~~~~~d~vV~ 69 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRDI-F-EEL----YS---KN--AIA-ALSDSRWQNLDKIVL 69 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchHH-H-Hhh----hc---Cc--eec-cCChhHhhCCCEEEE
Confidence 3488999999999999999998 45 9999999954332111 0 000 00 00 000 112345678999888
Q ss_pred cC--CCC-ccc-------ccccCHhHH--ccCCC-CcEEEecCCCccCCHHHHHHHHHc
Q 019328 243 HP--VLD-KTT-------YHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~l--plt-~~t-------~~li~~~~l--~~mk~-gailIN~sRG~~vd~~aL~~aL~~ 288 (342)
.- |.+ |.- ..++++-.| ..+++ ..+=|-=+.|..--..-|...|+.
T Consensus 70 SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 70 SPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred CCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 73 322 211 123444333 33433 234444467888777777888876
No 453
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.41 E-value=1.2 Score=44.07 Aligned_cols=90 Identities=8% Similarity=-0.080 Sum_probs=52.8
Q ss_pred CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (342)
Q Consensus 165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV 240 (342)
..++-|+|+|.+|+.+++.| +..|.++.+.++.... .... .+. ..-.....+.+.+ +++|+.|
T Consensus 240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~--~~~~---------~g~-~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLE--HRLP---------DDA-DLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhh--hhcc---------CCC-cEEEeCCCCHHHHHhcCcccCCEE
Confidence 56799999999999999998 5778888888865321 1110 111 1101111222222 4688999
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEE
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILV 269 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailI 269 (342)
+++.+.+.++.. -....+.+.|+..+|
T Consensus 307 I~~t~dD~~Nl~--ivL~ar~l~p~~kII 333 (393)
T PRK10537 307 LALRDNDADNAF--VVLAAKEMSSDVKTV 333 (393)
T ss_pred EEcCCChHHHHH--HHHHHHHhCCCCcEE
Confidence 988885554433 233455565654443
No 454
>PTZ00188 adrenodoxin reductase; Provisional
Probab=89.40 E-value=2.5 Score=43.11 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=52.2
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh-------------HHHHHHhhhhhhhccCCCC---Cccc
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PVTW 224 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~~ 224 (342)
..-..++|+|||-|.-|-..|+.|++..|.+|..|++.+.+ ........+...+...+.. ....
T Consensus 35 ~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 35 NEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 34568999999999999999997544569999999877542 0011111111111111100 0111
Q ss_pred cccCCHHHHhhcCCEEEEcCC
Q 019328 225 KRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 225 ~~~~~l~ell~~sDiV~l~lp 245 (342)
....+++++.++.|.|++++-
T Consensus 115 G~Dvt~eeL~~~YDAVIlAtG 135 (506)
T PTZ00188 115 GVDLKMEELRNHYNCVIFCCG 135 (506)
T ss_pred cCccCHHHHHhcCCEEEEEcC
Confidence 123478999999999999864
No 455
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.30 E-value=1.6 Score=41.99 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=47.4
Q ss_pred CEEEEEccChHHHHHHHHHHhcC---CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC--CE
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DV 239 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--Di 239 (342)
-+.||+|.|.|++-+++.| ... +..|. ++||+... ..+|.+. .+.. ....+.+.|||++.. |+
T Consensus 7 ir~Gi~g~g~ia~~f~~al-~~~p~s~~~Ivava~~s~~~-A~~fAq~-------~~~~--~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRAL-HTLPESNHQIVAVADPSLER-AKEFAQR-------HNIP--NPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred eEEEEeehhHHHHHHHHHh-ccCcccCcEEEEEecccHHH-HHHHHHh-------cCCC--CCccccCHHHHhcCCCcCE
Confidence 4799999999999999987 433 56665 55775442 3333322 2221 223467999999776 99
Q ss_pred EEEcCCC
Q 019328 240 ISLHPVL 246 (342)
Q Consensus 240 V~l~lpl 246 (342)
|.+..|.
T Consensus 76 Vyi~~~~ 82 (351)
T KOG2741|consen 76 VYISTPN 82 (351)
T ss_pred EEeCCCC
Confidence 9999884
No 456
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.28 E-value=1.5 Score=41.56 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh-----H-----HHH---HH-hhhhhhhccCCCCCcccc----cc
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----R-----LEK---FV-TAYGQFLKANGEQPVTWK----RA 227 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~-----~-----~~~---~~-~~~~~~~~~~~~~~~~~~----~~ 227 (342)
+|.|||.|.+|.++++.|+ ..|. ++...|...-. + .+. .. +.....+.. ........ ..
T Consensus 1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~-~np~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVND-RVPGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHH-HCCCCEEEEEeccc
Confidence 5899999999999999985 4454 67777754210 0 000 00 000000100 00001110 11
Q ss_pred -CCHHHHhhcCCEEEEcCCCCcccccccCHhHHccC-----CCCcEEEecCCCc
Q 019328 228 -SSMDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP 275 (342)
Q Consensus 228 -~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~m-----k~gailIN~sRG~ 275 (342)
..-++.+++.|+|+.++. +.++|..+++...+.. +.+.-||..+..+
T Consensus 79 ~~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 79 QDKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred CchhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 122577899999999887 4678888887655543 2345577765543
No 457
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=89.28 E-value=2.8 Score=42.06 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=63.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHHhc--CC------cEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhh
Q 019328 166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~a--~g------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (342)
.+|+|||. |.+|..+|-.|+.. || -+++.+|.+.+.....-.+ +.+.. ..........+-.+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD-----L~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME-----LEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH-----HHHhhhhhcCceEEecCCHHHhC
Confidence 48999999 99999999887532 22 3788899887643221111 11111 00001111134457789
Q ss_pred cCCEEEEcCC--CCc-cccc-cc--CH-------hHHcc-CCCCcEEEecCCCccCCHHHHHHH
Q 019328 236 EADVISLHPV--LDK-TTYH-LI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALVEH 285 (342)
Q Consensus 236 ~sDiV~l~lp--lt~-~t~~-li--~~-------~~l~~-mk~gailIN~sRG~~vd~~aL~~a 285 (342)
+||+|++..- ..+ ++|. ++ |. ..+.. -+|++++|.++ ..+|.-..+-.
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~ 237 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICL 237 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHH
Confidence 9999999843 322 1221 11 11 23444 47889999887 55555554443
No 458
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.24 E-value=1.2 Score=42.86 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=49.6
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHhc--CC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328 165 GQTVGVIGA-GRIGSAYARMMVEG--FK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 165 gktvGIiG~-G~IG~~vA~~l~~a--~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV 240 (342)
+++|+|+|. |.+|+.+.+.|+ . +. .++.+..+..... .. +.-.+ ....... .+. +.++.+|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g-~~--------l~~~g-~~i~v~d-~~~-~~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAG-KE--------LSFKG-KELKVED-LTT-FDFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCC-Ce--------eeeCC-ceeEEee-CCH-HHHcCCCEE
Confidence 468999997 999999999984 5 32 2445553332110 00 00001 1111111 122 234789999
Q ss_pred EEcCCCCcccccccCHhHHcc-CCCCcEEEecCC
Q 019328 241 SLHPVLDKTTYHLINKERLAT-MKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~-mk~gailIN~sR 273 (342)
++|+|.. .++ +...+ ++.|+++|+.|.
T Consensus 68 f~A~g~g-~s~-----~~~~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 68 LFSAGGS-VSK-----KYAPKAAAAGAVVIDNSS 95 (334)
T ss_pred EECCChH-HHH-----HHHHHHHhCCCEEEECCc
Confidence 9999843 222 22222 357889998773
No 459
>PRK06196 oxidoreductase; Provisional
Probab=89.21 E-value=0.97 Score=42.77 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=34.3
Q ss_pred cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
..+.||++-|.|. |.||+.+|+.|+ ..|++|++.+|+...
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~~ 62 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDV 62 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 3578999999998 899999999984 679999999987653
No 460
>PLN02427 UDP-apiose/xylose synthase
Probab=89.16 E-value=0.86 Score=44.47 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=33.8
Q ss_pred cccccCCCEEEEEcc-ChHHHHHHHHHHhcC-CcEEEEEcCChh
Q 019328 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA 200 (342)
Q Consensus 159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~-g~~V~~~d~~~~ 200 (342)
.|+.++.++|.|.|- |-||+.+++.|. .- |.+|+++|++..
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND 50 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence 466788889999995 999999999984 44 589999997653
No 461
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.13 E-value=1.1 Score=48.50 Aligned_cols=112 Identities=24% Similarity=0.317 Sum_probs=67.2
Q ss_pred CEEEEEccChHHHHH-HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328 166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvGIiG~G~IG~~v-A~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l 244 (342)
+++.|+|+|.+|.+. |+.| ...|.+|.++|....+.... ++..+ ..... ....+.+..+|+|+..-
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~g---i~~~~-g~~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKG---ARFFL-GHQEEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCC---CEEeC-CCCHHHcCCCCEEEECC
Confidence 469999999999998 9987 68999999999765432221 11111 11111 11235567899998773
Q ss_pred CCCcccc----------cccCHhHH-cc-CCC-CcEEEecCCCccCCHHHHHHHHHcCC
Q 019328 245 VLDKTTY----------HLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 245 plt~~t~----------~li~~~~l-~~-mk~-gailIN~sRG~~vd~~aL~~aL~~g~ 290 (342)
--.+++. .++++-.+ .. ++. ..+-|-=+.|..=-..-+...|++..
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2222211 23333322 23 332 34555556788877777788887643
No 462
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.07 E-value=1.4 Score=46.45 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.2
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~ 199 (342)
..|++|.|||-|..|...|..| ...|.+|.+|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L-~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADIL-ARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHH-HHcCCcEEEEeCCC
Confidence 4699999999999999999997 57899999998765
No 463
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.02 E-value=0.74 Score=44.56 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=29.8
Q ss_pred CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHH
Q 019328 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFV 207 (342)
Q Consensus 166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~ 207 (342)
.+|||+|+|+||+..++.+...-+.++.+ +|+......-.+.
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~l 48 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYM 48 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHh
Confidence 48999999999999999864334678776 5666554433343
No 464
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.99 E-value=1.4 Score=40.24 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.+.||++-|.|- |.||+.+|+.|+ ..|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 478999999997 999999999984 78999999998764
No 465
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.98 E-value=1.9 Score=41.13 Aligned_cols=94 Identities=21% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH---Hhh--cC
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---VLR--EA 237 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll~--~s 237 (342)
.|++|.|.|.|.+|...++.+ +.+|.+ |++.+++..+.. +...++. ...-.....+.++ +.. ..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~--~~~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEKLA--LAKSLGA-------MQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--HHHHcCC-------ceEecCcccCHHHHHHHhcCCCC
Confidence 478999999999999999985 899997 678887765432 1122211 0000000111222 221 24
Q ss_pred C-EEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328 238 D-VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 238 D-iV~l~lplt~~t~~li~~~~l~~mk~gailIN~s 272 (342)
| +++-++.. +.+ -.+.++.++++..++.++
T Consensus 230 d~~v~d~~G~-~~~----~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETAGV-PQT----VELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECCCC-HHH----HHHHHHHhhcCCEEEEEc
Confidence 5 66666552 211 244678889999998886
No 466
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.96 E-value=2.3 Score=40.09 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=58.8
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHhhcCCEEE
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 241 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~sDiV~ 241 (342)
-.|.+|.|+|.|.+|+.+++.+ +++|.+|++.+++...... ...++ ..........+. ...-...|+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~~--~~~~g-------~~~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKREL--ARKLG-------ADEVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHhC-------CcEEeccCCcchHHhccCCCCEEE
Confidence 3467999999999999998885 8999999999887654211 11111 000000000011 11123578888
Q ss_pred EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
-++.... ...+.++.|+++..+|+++.
T Consensus 231 ~~~~~~~-----~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 231 VTVVSGA-----AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ECCCcHH-----HHHHHHHhcccCCEEEEECC
Confidence 7765222 23556888999999998864
No 467
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.95 E-value=0.87 Score=43.78 Aligned_cols=112 Identities=19% Similarity=0.158 Sum_probs=59.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHHh-cCCc-----EEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~-a~g~-----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 236 (342)
++|+|||. |.+|..+|-.|.. .+-- ++..+|...... ....... +.+.. ..........+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D----l~~~~~~~~~~~~i~~~~~~~~~d 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME----LEDCAFPLLAEIVITDDPNVAFKD 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh----hhhccccccCceEEecCcHHHhCC
Confidence 48999999 9999999988642 2222 789999853220 1110000 01100 000001112355678899
Q ss_pred CCEEEEcCC--CCc-ccccc-c--CH-------hHHccCC-CCcEEEecCCCccCCHHHHH
Q 019328 237 ADVISLHPV--LDK-TTYHL-I--NK-------ERLATMK-KEAILVNCSRGPVIDEVALV 283 (342)
Q Consensus 237 sDiV~l~lp--lt~-~t~~l-i--~~-------~~l~~mk-~gailIN~sRG~~vd~~aL~ 283 (342)
||+|+++.- ..+ +||.- + |. ..+.... |.+++|+++ ..+|.-.-+
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 999999843 222 23221 1 11 2233344 588999987 555554433
No 468
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=88.85 E-value=2.7 Score=40.12 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=59.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH----HHHhh--c
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E 236 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~ 236 (342)
.|.+|.|.|.|.+|+.+++.+ +..|+ +|++.+++..+.. +...++. ...-.....++ .++.. .
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~--~~~~~ga-------~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARRE--LAEELGA-------TIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHhCC-------CEEECCCccCHHHHHHHHhCCCC
Confidence 578999999999999999985 89999 8888887765421 1111211 00000011122 22332 3
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.|+++-+..... .-...++.++++..++.++.
T Consensus 242 ~d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 242 VDVSFDCAGVQA-----TLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCEEEECCCCHH-----HHHHHHHhccCCCEEEEEcc
Confidence 899988875322 12456788899999998865
No 469
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.84 E-value=2.1 Score=40.45 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=59.8
Q ss_pred CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CCHHHHhh-----c
Q 019328 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E 236 (342)
Q Consensus 164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~ 236 (342)
.|.+|.|.| -|.+|+.+++.+ +.+|++|++.+++.++. ++..+++ ......... .++.+.+. .
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~--~~~~~lG-------a~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV--AYLKKLG-------FDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHHcC-------CCEEEeccccccHHHHHHHhCCCC
Confidence 478999999 599999999985 89999999888776542 1112222 100000011 13333322 3
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
.|+++-++.. + . + ...++.++++..+++.+..
T Consensus 208 vdvv~d~~G~-~---~-~-~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 208 YDCYFDNVGG-E---F-S-NTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred eEEEEECCCH-H---H-H-HHHHHHhCcCcEEEEecch
Confidence 6888877652 2 1 2 5678889999999988753
No 470
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.78 E-value=1.2 Score=43.89 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=49.8
Q ss_pred cCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH
Q 019328 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (342)
Q Consensus 163 l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (342)
..|++|+|+|+. .-...+++.| ...|++|.+|||...... ..+.....++++
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-----------------~~~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-----------------FFNSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-----------------hcCCeeeCCHHH
Confidence 478999999994 4567899997 689999999999854311 012334679999
Q ss_pred HhhcCCEEEEcCC
Q 019328 233 VLREADVISLHPV 245 (342)
Q Consensus 233 ll~~sDiV~l~lp 245 (342)
.++.||.|++..-
T Consensus 356 ~~~~~~~~~~~~~ 368 (388)
T PRK15057 356 FKQQADVIISNRM 368 (388)
T ss_pred HHHhCCEEEEcCC
Confidence 9999999998754
No 471
>PRK12747 short chain dehydrogenase; Provisional
Probab=88.70 E-value=2.1 Score=38.72 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=28.6
Q ss_pred cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcC
Q 019328 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL 197 (342)
Q Consensus 163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~ 197 (342)
+.||++-|.|- |.||+.+|+.| ...|++|+..++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence 46899999995 79999999998 478999987643
No 472
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=88.64 E-value=1.1 Score=43.46 Aligned_cols=88 Identities=17% Similarity=0.300 Sum_probs=48.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHhc--CC-cEEEEE--cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVEG--FK-MNLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~a--~g-~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (342)
...+|+|+|. |.+|+.+.+.|. . +- .++.+. .++..+.. ...+ ...... ..+. +.++.+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~hP~~~l~~las~rsaGk~~-----------~~~~-~~~~v~-~~~~-~~~~~~ 70 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAGKKV-----------TFEG-RDYTVE-ELTE-DSFDGV 70 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHH-hCCCCcceEEEEEccCCCCCee-----------eecC-ceeEEE-eCCH-HHHcCC
Confidence 3568999997 999999999974 4 32 233333 23222110 0111 111111 1122 345889
Q ss_pred CEEEEcCCCCcccccccCHhHHcc-CCCCcEEEecC
Q 019328 238 DVISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS 272 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~-mk~gailIN~s 272 (342)
|+|++++|.. .+ .++... .+.|+.+|+.|
T Consensus 71 D~vf~a~p~~-~s-----~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 71 DIALFSAGGS-IS-----KKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred CEEEECCCcH-HH-----HHHHHHHHhCCCEEEECC
Confidence 9999999944 22 222222 24688888887
No 473
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.61 E-value=0.81 Score=41.12 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
++.|+++.|.|. |.||+.+|+.+ ...|++|+..+++...
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~ 41 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEK 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 377999999998 99999999998 5779999999988643
No 474
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.49 E-value=1.4 Score=42.58 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.5
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~ 201 (342)
..|.+|.|.|.|.+|..+++. ++.+|+ +|++.+++..+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~ 221 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK 221 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence 458899999999999999998 489999 79999887654
No 475
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=88.45 E-value=0.56 Score=45.64 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.3
Q ss_pred EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~ 201 (342)
+|||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus 1 kililG~g~~~~~l~~aa-~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 589999999999999995 7899999999987643
No 476
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=88.40 E-value=2.4 Score=40.35 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=59.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CCHHH----Hhh-cC
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA 237 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~s 237 (342)
.|++|.|.|.|.+|+.+++.+ +++|++|++.+++.+... +...++. ...-.... .++.+ +.. ..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~--~~~~~g~-------~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKLE--LARELGA-------VATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHH--HHHHhCC-------CEEEccccchhHHHHHHHHhCCCC
Confidence 478999999999999999985 899999999887765421 1122221 00000011 12222 221 47
Q ss_pred CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
|+++-++.. .+ .-...++.|+++..+|+++..
T Consensus 235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCCc
Confidence 888877652 11 123467889999999988754
No 477
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.39 E-value=2.3 Score=40.89 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc-cCCHHHHhh-----c
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLR-----E 236 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~-----~ 236 (342)
.|.+|.|.|. |.+|...++.+ +.+|++|++.+++..+... ....++ ........ ..++.+.+. .
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlA-k~~G~~Vi~~~~~~~k~~~-~~~~lG-------a~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLA-KLHGCYVVGSAGSSQKVDL-LKNKLG-------FDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEcCCHHHHHH-HHHhcC-------CCEEEECCCcccHHHHHHHHCCCC
Confidence 5889999999 99999999984 8999999998877654211 000111 11000001 113433332 3
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
.|+++-++.. + .-...++.++++..++.++-
T Consensus 229 vD~v~d~vG~-~-----~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 229 IDIYFDNVGG-D-----MLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred cEEEEECCCH-H-----HHHHHHHHhccCCEEEEECc
Confidence 6888877651 1 12456788888888887763
No 478
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.26 E-value=2.4 Score=41.08 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~ 201 (342)
.|.+|.|.|.|.||...++.+ +.+|+ +|++.+++..+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~A-k~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGA-RMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 478999999999999999984 89999 79999887654
No 479
>PRK13529 malate dehydrogenase; Provisional
Probab=88.25 E-value=14 Score=38.20 Aligned_cols=186 Identities=19% Similarity=0.151 Sum_probs=112.6
Q ss_pred hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~ 186 (342)
+..|++.|+.-- .+|=.+++-+|+..|-. |..|...++.|+|.|.-|-.+|+.|..
T Consensus 261 r~~i~~FnDDiQ---GTaaV~LAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~ 316 (563)
T PRK13529 261 RDEICTFNDDIQ---GTGAVTLAGLLAALKIT---------------------GEPLSDQRIVFLGAGSAGCGIADQIVA 316 (563)
T ss_pred ccCCCeeccccc---hHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHH
Confidence 346777776543 44666788888777632 357888999999999999999998753
Q ss_pred c---CCc-------EEEEEcCCh---hhH--HHHHHhhhhhhhccCCCC-Ccc-ccccCCHHHHhhcC--CEEEEcCCCC
Q 019328 187 G---FKM-------NLIYYDLYQ---ATR--LEKFVTAYGQFLKANGEQ-PVT-WKRASSMDEVLREA--DVISLHPVLD 247 (342)
Q Consensus 187 a---~g~-------~V~~~d~~~---~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~ell~~s--DiV~l~lplt 247 (342)
+ .|+ +++.+|+.- +.+ ...+...| .+..... .+. .....+|.|+++.. |+++=+-
T Consensus 317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~f---a~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S--- 390 (563)
T PRK13529 317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPY---ARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS--- 390 (563)
T ss_pred HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHH---hhhcccccccccccCCCCHHHHHhccCCCEEEEec---
Confidence 2 476 799998762 111 11222222 1111100 000 01125899999988 8887541
Q ss_pred cccccccCHhHHccCCC---CcEEEecCCCccCCHHHHHHHHH--cCC-ccEEEeecCCCCCCC-CCCccCCCceEEcCC
Q 019328 248 KTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-KPGLSEMKNAIVVPH 320 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk~---gailIN~sRG~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~L~~~~nvi~TPH 320 (342)
..-+.|+++.++.|.+ .+++.=.|+-...-|-.-.+|.+ +|+ |.+.|--.-..+-.- ...--+..|+++-|-
T Consensus 391 -~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPG 469 (563)
T PRK13529 391 -GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPG 469 (563)
T ss_pred -CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeeccc
Confidence 2247899999999987 89999998877644444444444 343 444432100000000 012345689999998
Q ss_pred CCC
Q 019328 321 IAS 323 (342)
Q Consensus 321 ia~ 323 (342)
++-
T Consensus 470 igl 472 (563)
T PRK13529 470 LGL 472 (563)
T ss_pred chh
Confidence 874
No 480
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=88.17 E-value=0.62 Score=41.46 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=31.1
Q ss_pred cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~ 198 (342)
+.|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 4689999999999999999999985 5676 47778755
No 481
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.05 E-value=2.3 Score=41.85 Aligned_cols=95 Identities=19% Similarity=0.349 Sum_probs=64.9
Q ss_pred ccccCCCEEEEEcc---ChH-------HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328 160 GNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (342)
Q Consensus 160 g~~l~gktvGIiG~---G~I-------G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
++.+.|.+|.|+|+ |++ ...+.+.+ ...|.+|.+|||+.+.....+ . .... ...+
T Consensus 317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-~------------~~~~-~~~~ 381 (436)
T COG0677 317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-D------------GEGV-TLAI 381 (436)
T ss_pred CCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-h------------cccc-chhh
Confidence 56799999999998 554 35677776 578899999999976421000 0 0001 1368
Q ss_pred HHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 230 l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
+++.++.+|+|++.+.- +-..-++.+.+..+ ..+++++ |+
T Consensus 382 ~e~al~~~D~vVi~tDH--~~fk~id~~~i~~~--~~vivDt-rn 421 (436)
T COG0677 382 LEEALKDADAVVIATDH--SEFKEIDYEAIGKE--AKVIVDT-RN 421 (436)
T ss_pred HHHHhccCCEEEEEecc--HHhhcCCHHHhccC--CcEEEEC-cc
Confidence 89999999999998752 22334777777765 6677775 44
No 482
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=88.05 E-value=1.5 Score=39.40 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~ 199 (342)
++.||++-|.|. |.||+.+|+.|+ .-|++|+..+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCch
Confidence 478999999998 899999999984 6799999999865
No 483
>PLN03075 nicotianamine synthase; Provisional
Probab=88.02 E-value=1.5 Score=41.67 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhcc-CCCC-CccccccCCHHHH---hhcC
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQ-PVTWKRASSMDEV---LREA 237 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~el---l~~s 237 (342)
..++|..||.|..|-...-.++. .-+.+++++|.++.....+.. ..+. .+.. ...+. ..++.++ +.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~-----~~~~~~gL~~rV~F~-~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR-----LVSSDPDLSKRMFFH-TADVMDVTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-----HhhhccCccCCcEEE-ECchhhcccccCCc
Confidence 78999999999887655443322 235689999999764322110 0111 1111 12221 2233322 4689
Q ss_pred CEEEEcC--CCCcccccccCHhHHccCCCCcEEEec
Q 019328 238 DVISLHP--VLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 238 DiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~ 271 (342)
|+|++.+ ..+++.+.-+-+...+.|+||++|+--
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999883 113455666667888899999998854
No 484
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.02 E-value=2.6 Score=40.72 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~ 201 (342)
.|.+|.|.|.|.+|...++.+ +.+|+ +|++.+++...
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~a-k~~G~~~vi~~~~~~~~ 224 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGA-RIRGASRIIGVDLNPSK 224 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 588999999999999999985 89999 79999887654
No 485
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.93 E-value=2 Score=45.33 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=32.1
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~ 199 (342)
-.|++|.|||.|..|...|..| ...|.+|.+|++..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L-~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVL-ARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 4799999999999999999997 57899999998753
No 486
>PRK10083 putative oxidoreductase; Provisional
Probab=87.90 E-value=2.7 Score=39.84 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=56.5
Q ss_pred cCCCEEEEEccChHHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh----c
Q 019328 163 LKGQTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----E 236 (342)
Q Consensus 163 l~gktvGIiG~G~IG~~vA~~l~~a-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~ 236 (342)
-.|.+|.|.|.|.+|+.+++.+ ++ +|++ |++.++...+... ..+++ ....-.....++.+.+. +
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a-~~~~G~~~v~~~~~~~~~~~~--~~~~G-------a~~~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVL-KGVYNVKAVIVADRIDERLAL--AKESG-------ADWVINNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHhCCCCEEEEEcCCHHHHHH--HHHhC-------CcEEecCccccHHHHHhcCCCC
Confidence 3478999999999999999985 65 6986 7777776544211 11121 10000001123334332 2
Q ss_pred CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG 274 (342)
.|+++-+.... . .-.+.++.++++..+|+++..
T Consensus 229 ~d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 229 PTLIIDAACHP-S----ILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred CCEEEECCCCH-H----HHHHHHHHhhcCCEEEEEccC
Confidence 35666655421 1 124567888999999998753
No 487
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.90 E-value=2.7 Score=39.97 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhccCCCCCccc-cccCCHHHHh-----h
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTW-KRASSMDEVL-----R 235 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~ell-----~ 235 (342)
.|.+|.|.|. |.+|+.+++.+ +.+|++|++.+++.++.. +... ++ ...... ....++.+.+ .
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlA-k~~G~~Vi~~~~~~~~~~--~~~~~lG-------a~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLA-KLKGCYVVGSAGSDEKVD--LLKNKLG-------FDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--HHHHhcC-------CceeEEcCCcccHHHHHHHhCCC
Confidence 5789999998 99999999985 899999998887755421 1111 11 100000 0011333322 2
Q ss_pred cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR 273 (342)
..|+++-++.. . .-.+.++.++++..++..+.
T Consensus 221 gvd~v~d~~g~-~-----~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 221 GIDIYFDNVGG-K-----MLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CcEEEEECCCH-H-----HHHHHHHHhccCcEEEEecc
Confidence 46888877651 1 12467888999999998764
No 488
>PRK08589 short chain dehydrogenase; Validated
Probab=87.88 E-value=1.1 Score=41.23 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=32.2
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~ 198 (342)
.+.||++-|.|. |.||+++|+.|+ .-|++|+..+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence 478999999998 889999999984 679999999987
No 489
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.72 E-value=1.1 Score=43.99 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=34.9
Q ss_pred cccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.++...|+++.|.|- |.||+.+++.| ..-|.+|++++|+..
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~L-l~~G~~V~~l~R~~~ 95 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVREL-VRRGYNVVAVAREKS 95 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEEechh
Confidence 346788999999997 99999999998 467999999998754
No 490
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=87.67 E-value=2.2 Score=38.26 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=33.0
Q ss_pred ccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.+.+|++.|.| .|.||+.+++.|+ ..|++|++.+|+..
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~ 41 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 46789999999 6999999999984 67999999998864
No 491
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.48 E-value=2.2 Score=41.45 Aligned_cols=88 Identities=15% Similarity=0.328 Sum_probs=48.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHhcCCcE---EEEEc--CChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328 165 GQTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYD--LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 165 gktvGIiG~-G~IG~~vA~~l~~a~g~~---V~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (342)
+.+|||||. |..|+.+.+.|...-.+. +..+. ++..+. +.-.+ ....... .+.++ ++++|
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-----------~~~~~-~~l~v~~-~~~~~-~~~~D 70 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-----------VQFKG-REIIIQE-AKINS-FEGVD 70 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-----------eeeCC-cceEEEe-CCHHH-hcCCC
Confidence 468999998 999999999985223333 43332 222111 10011 1111111 24444 47899
Q ss_pred EEEEcCCCCcccccccCHhHHcc-CCCCcEEEecC
Q 019328 239 VISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS 272 (342)
Q Consensus 239 iV~l~lplt~~t~~li~~~~l~~-mk~gailIN~s 272 (342)
++++++|.. .+ +++... .+.|+.+|+.|
T Consensus 71 ivf~a~~~~-~s-----~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 71 IAFFSAGGE-VS-----RQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred EEEECCChH-HH-----HHHHHHHHHCCCEEEECc
Confidence 999999843 22 222222 24677777776
No 492
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=87.42 E-value=2.3 Score=43.60 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=62.4
Q ss_pred cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
..+.||+.-++|=-.| |..++..| +..+..|..+-.. ..++.+.+.++|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI 208 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI 208 (935)
T ss_pred CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence 4689999999998665 88999887 6778888775321 2478899999999
Q ss_pred EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~ 279 (342)
|+.++--.. ++-. +.+|||+++|+++--.+-|.
T Consensus 209 vIvAiG~Pe----fVKg---dWiKpGavVIDvGINyvpD~ 241 (935)
T KOG4230|consen 209 VIVAIGQPE----FVKG---DWIKPGAVVIDVGINYVPDP 241 (935)
T ss_pred EEEEcCCcc----eeec---ccccCCcEEEEccccccCCC
Confidence 999986333 3323 34689999999987665543
No 493
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.41 E-value=1.3 Score=41.01 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=45.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc-CC
Q 019328 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD 238 (342)
Q Consensus 167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~-sD 238 (342)
+|.|.|. |.+|+.+++.| ..-|.+|.+..|+++..... .. ......+....++.+++ .. +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~---~~-------~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP---NE-------KHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC---CC-------ccccccCCCHHHHHHHHhcccCcCCcee
Confidence 3678887 99999999997 46789999999886532100 00 00011122234566667 45 89
Q ss_pred EEEEcCCCCc
Q 019328 239 VISLHPVLDK 248 (342)
Q Consensus 239 iV~l~lplt~ 248 (342)
.|+++.|...
T Consensus 70 ~v~~~~~~~~ 79 (285)
T TIGR03649 70 AVYLVAPPIP 79 (285)
T ss_pred EEEEeCCCCC
Confidence 9998887543
No 494
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.31 E-value=2.3 Score=38.93 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH--hhcCCEE
Q 019328 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--LREADVI 240 (342)
Q Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--l~~sDiV 240 (342)
.|.++.|.|.|.+|+.+++.+ +++|.+ |++.+++.+... +..+++. .... . ...+.. -...|++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a-~~~g~~~vi~~~~~~~~~~--~~~~~g~------~~~~--~--~~~~~~~~~~~~d~v 163 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLA-KAAGAREVVGVDPDAARRE--LAEALGP------ADPV--A--ADTADEIGGRGADVV 163 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEECCCHHHHH--HHHHcCC------Cccc--c--ccchhhhcCCCCCEE
Confidence 578999999999999999984 899998 998887655421 2122210 0000 0 000011 1247888
Q ss_pred EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~ 275 (342)
+.++.... .-...++.++++..+++++-.+
T Consensus 164 l~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~~ 193 (277)
T cd08255 164 IEASGSPS-----ALETALRLLRDRGRVVLVGWYG 193 (277)
T ss_pred EEccCChH-----HHHHHHHHhcCCcEEEEEeccC
Confidence 87765322 2255678899999999887543
No 495
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.17 E-value=1.5 Score=43.60 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
..++||++.|.|- |.||+++|+.+ ...|++|+..+++.....+.. .... . .............++.+.+.+.|+
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~~-~~~~--~-~v~~v~~Dvsd~~~v~~~l~~IDi 248 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLEI-NGED--L-PVKTLHWQVGQEAALAELLEKVDI 248 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHH-hhcC--C-CeEEEEeeCCCHHHHHHHhCCCCE
Confidence 3578999999998 99999999998 467999999998754321111 0000 0 000000001112345566788999
Q ss_pred EEEcC
Q 019328 240 ISLHP 244 (342)
Q Consensus 240 V~l~l 244 (342)
++.+.
T Consensus 249 LInnA 253 (406)
T PRK07424 249 LIINH 253 (406)
T ss_pred EEECC
Confidence 98764
No 496
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=87.15 E-value=1.7 Score=43.52 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=64.2
Q ss_pred EEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc--C
Q 019328 168 VGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH--P 244 (342)
Q Consensus 168 vGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~--l 244 (342)
+-+||+|.+|.+ +|+.| +..|.+|.++|......... ++..+ .......+ .+.+.++|+|+.. +
T Consensus 2 ~~~iGiggsGm~~la~~L-~~~G~~v~~~D~~~~~~~~~--------l~~~g---i~~~~g~~-~~~~~~~d~vV~spgi 68 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEIL-LNRGYQVSGSDIAENATTKR--------LEALG---IPIYIGHS-AENLDDADVVVVSAAI 68 (448)
T ss_pred EEEEEECHHHHHHHHHHH-HHCCCeEEEECCCcchHHHH--------HHHCc---CEEeCCCC-HHHCCCCCEEEECCCC
Confidence 679999999998 99997 68999999999765431111 11111 11110112 2445679998876 3
Q ss_pred CC-Ccccc-------cccCHh-HHcc-CC-CCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328 245 VL-DKTTY-------HLINKE-RLAT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 245 pl-t~~t~-------~li~~~-~l~~-mk-~gailIN~sRG~~vd~~aL~~aL~~g~ 290 (342)
|. +|.-+ .++++- ++.. ++ ...+-|-=+.|..--..-+...|+...
T Consensus 69 ~~~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 69 KDDNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCCCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 32 22211 233332 3322 33 334555556788877777778887643
No 497
>PRK05442 malate dehydrogenase; Provisional
Probab=87.04 E-value=1.2 Score=42.79 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=58.3
Q ss_pred CEEEEEcc-ChHHHHHHHHHHh-cCCc-----EEEEEcCChhh-HHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT-RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 166 ktvGIiG~-G~IG~~vA~~l~~-a~g~-----~V~~~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 236 (342)
.+|+|||. |.+|..+|-.|.. ++-- ++..+|..... ........ +.+.. ..........+..+.+++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D----l~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME----LDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh----hhhhhhhhcCCcEEecChHHHhCC
Confidence 48999998 9999999987642 2212 78999985421 01110000 00100 000001112355678899
Q ss_pred CCEEEEcCC--CCc-ccccc-c--CH-------hHHcc-CCCCcEEEecCCCccCCHHH
Q 019328 237 ADVISLHPV--LDK-TTYHL-I--NK-------ERLAT-MKKEAILVNCSRGPVIDEVA 281 (342)
Q Consensus 237 sDiV~l~lp--lt~-~t~~l-i--~~-------~~l~~-mk~gailIN~sRG~~vd~~a 281 (342)
||+|+++.- ..+ +||.- + |. ..+.. -+|.+++|.++ .++|.-.
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 999998743 222 23321 1 11 12333 34788999988 4454443
No 498
>PRK05717 oxidoreductase; Validated
Probab=87.04 E-value=3.7 Score=37.20 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~ 200 (342)
.+.||++-|.|- |.||+.+|+.|+ .-|++|+..+++..
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~-~~g~~v~~~~~~~~ 45 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLI-AEGWQVVLADLDRE 45 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHH-HcCCEEEEEcCCHH
Confidence 688999999996 999999999984 67999999988754
No 499
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=86.98 E-value=2.7 Score=42.21 Aligned_cols=126 Identities=15% Similarity=0.261 Sum_probs=73.0
Q ss_pred CEEEEEccChHHHH--HHHHHHh---cCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328 166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 166 ktvGIiG~G~IG~~--vA~~l~~---a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi 239 (342)
.+|.|||-|.. .. +.+-+.+ .++ -+|..+|..+... +. ...+...+......+.......+.++.+..|||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence 37999999985 32 2222221 244 6899999987432 11 111111111111224455567899999999999
Q ss_pred EEEcCCCCc-c----------cccccC----------------------HhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328 240 ISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 240 V~l~lplt~-~----------t~~li~----------------------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 286 (342)
|++.+--.- + -+++++ .+.++...|++++||.+..--+-..++.+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~ 157 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLF 157 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHC
Confidence 998754221 1 112222 1234445689999999987766666666665
Q ss_pred HcCCccEE
Q 019328 287 KQNPMFRV 294 (342)
Q Consensus 287 ~~g~i~ga 294 (342)
...++.|.
T Consensus 158 ~~~kviGl 165 (437)
T cd05298 158 PNARILNI 165 (437)
T ss_pred CCCCEEEE
Confidence 44555555
No 500
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=86.96 E-value=1.7 Score=42.06 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=51.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHhc-CC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCE
Q 019328 164 KGQTVGVIGA-GRIGSAYARMMVEG-FK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV 239 (342)
Q Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~a-~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDi 239 (342)
.+.+|||||. |-.|+++.+.|... +. .++..+...... |..+.-.+. ... ..++++. ++++|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa---------G~~~~~~~~-~~~---v~~~~~~~~~~~Dv 69 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA---------GETLRFGGK-SVT---VQDAAEFDWSQAQL 69 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC---------CceEEECCc-ceE---EEeCchhhccCCCE
Confidence 4568999998 99999999998421 43 355544322111 000111111 111 1244444 378999
Q ss_pred EEEcCCCCcccccccCHhHHccC-CCCcEEEecC
Q 019328 240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 240 V~l~lplt~~t~~li~~~~l~~m-k~gailIN~s 272 (342)
+++++|.. +..+..... +.|+.+|+.|
T Consensus 70 vf~a~p~~------~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 70 AFFVAGRE------ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred EEECCCHH------HHHHHHHHHHHCCCEEEECC
Confidence 99999943 222333332 5688888887
Done!