BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019329
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 125 KKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILS 184
K+ RGRPPGS + K + + HV+ V G D+ + ++++ R V +L
Sbjct: 86 KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145
Query: 185 ANGAISNVTLRQAAT---------SGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLS 235
NG +SNVTLRQ T GG VT GRFEILSL+G+ L + GGLS
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP---PGAGGLS 202
Query: 236 VSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
+ L+G G+V+GGSV L A+ PV ++ SF
Sbjct: 203 IFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234
>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
Length = 632
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 98 SSVTTATGGTGSGLSSPGGGPLSPDSIKKSRGRPP-------GSGSGKKHQLEALGSAGV 150
S VT A G T P PL D + +R RP G S + + + + +
Sbjct: 416 SDVTIAAGST-----IPARYPLPDDCLVIARSRPVVKPGWRLGIRSSRPQEPQPMPPGSL 470
Query: 151 GFTPHVITVKAGEDVSSKIMSFSQNGP-RAVCILSANGAISNVTLRQAATSGGTVTYEGR 209
P + + G+D+ ++ ++ P +A +LSA G++S TLR A +G + E R
Sbjct: 471 KIYP--LRLFPGQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-R 527
Query: 210 FEILSLSGSF 219
EIL+LSGS
Sbjct: 528 LEILALSGSL 537
>sp|P42695|CNDD3_HUMAN Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2
Length = 1498
Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 221 LSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRK--ESKSS 278
+S+ R+ G ++VS P+ G + LL A P+ + + L +K ESKS
Sbjct: 1312 VSQPCTPRASAGHVAVSSPTPET----GPLQRLLPKARPMSLSTIAILNSVKKAVESKSR 1367
Query: 279 HRMESLPVPPKLAPGGQPAGQCSPPSRGTLSESSGG 314
HR SL V P G P CS S +L + S G
Sbjct: 1368 HRSRSLGVLPFTLNSGSPEKTCSQVSSYSLEQESNG 1403
>sp|Q9LME6|MBD8_ARATH Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis
thaliana GN=MBD8 PE=2 SV=1
Length = 524
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 62 NVMNMGSGSEPMKRKRGRPRKY-GPDGTMSLALVPSPSSVTTATGGTGSGL---SSPG-- 115
NV+ G+ +KRKRGRPRK P + + +S T S L S G
Sbjct: 169 NVLIQGTSGNKIKRKRGRPRKIRNPSEENEVLDLTGEASTYVFVDKTSSNLGMVSRVGSS 228
Query: 116 GGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFT 153
G L +S+K+ RGRPP + + LE SA V +
Sbjct: 229 GISLDSNSVKRKRGRPPKNKE-EIMNLEKRDSAIVNIS 265
>sp|Q9H799|CE042_HUMAN Uncharacterized protein C5orf42 OS=Homo sapiens GN=C5orf42 PE=1 SV=4
Length = 3197
Score = 36.2 bits (82), Expect = 0.35, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 52 DGAIPQAQGL--NVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVTTATGGTG- 108
+G IP Q NV N+ GS P+ + G+PRK GP S +PS S G T
Sbjct: 2140 EGTIPSGQNSTGNVQNVPHGSIPLCQLNGQPRKKGP--IPSSQNLPSTSFYPAPAGNTHL 2197
Query: 109 SGLSSPGGGPLSPDSIKKSRGRPPGSG 135
LS+P +P I ++ PG G
Sbjct: 2198 YLLSTPSVVQKAPRLIPHAKTFSPGDG 2224
>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2
Length = 2799
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 84 GPDGTMSLALVPSPSSVTTATGGTGSGLS-SPGGGPLSPDSIKKSRGRPPGSGSGKKHQL 142
PDG + L P+ S+TTA GTG G S S GP + S+ +S+ R H +
Sbjct: 1034 DPDGDIDFILAPAVGSLTTAATGTGQGPSTSTIPGPSTEPSVVESKDR-----KANAHFI 1088
Query: 143 EALGSAGVGFTPHVITVKAGED 164
L V P++ + + +D
Sbjct: 1089 LKLLCDSVVLQPYLRELLSAKD 1110
>sp|A1AV44|YIDC_PELPD Membrane protein insertase YidC OS=Pelobacter propionicus (strain
DSM 2379) GN=yidC PE=3 SV=1
Length = 542
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 96 SPSSVTTATGGTGSGLSSPGGGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPH 155
PS++T +T +G L P G P D+ + G+K QL ++G GFT
Sbjct: 115 DPSALTFSTRASGFNL--PEGAPFVADATAVTMA------GGEKKQLVFTHNSGQGFTVR 166
Query: 156 VITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNV-TLRQAATSGGTV-TYEGRFEIL 213
I +G+ K+ + N N A+ V T++Q T G V + RFE
Sbjct: 167 KIYTFSGDSYGIKLDTQVFN----------NMAVPLVGTVQQVMTYPGLVKAKDSRFET- 215
Query: 214 SLSGSFLLSESSGQRSRTGGLS 235
+GS+L S++S + + +S
Sbjct: 216 --AGSYLFSDNSLESDKLKDVS 235
>sp|Q66666|TEGU_EHV2 Probable large tegument protein OS=Equine herpesvirus 2 (strain
86/87) GN=64 PE=3 SV=1
Length = 3436
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 269 ADGRKESKSSHRMESLPVPPKLAP--GGQPAGQCSPPSRGTLSESSGGPGSPL 319
ADG++E K++ R P P G +P GQC + E + GPGSPL
Sbjct: 1200 ADGKREPKAADRGSGSTAPGSRVPSAGREPGGQCEGEDHVAMDEGAPGPGSPL 1252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,308,958
Number of Sequences: 539616
Number of extensions: 7187759
Number of successful extensions: 23813
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 303
Number of HSP's that attempted gapping in prelim test: 22396
Number of HSP's gapped (non-prelim): 1616
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)