Query 019329
Match_columns 342
No_of_seqs 256 out of 605
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt4_A Hypothetical protein PH 99.9 8.2E-28 2.8E-32 206.4 11.7 118 153-276 10-130 (143)
2 2p6y_A Hypothetical protein VC 99.9 8.3E-27 2.8E-31 200.6 16.1 116 152-276 2-118 (142)
3 2hx0_A Putative DNA-binding pr 99.9 8.2E-27 2.8E-31 203.3 16.1 121 147-276 13-134 (154)
4 3htn_A Putative DNA binding pr 99.9 2.7E-27 9.4E-32 205.3 12.3 117 153-275 16-135 (149)
5 2h6l_A Hypothetical protein; N 99.9 5.5E-27 1.9E-31 201.9 11.0 117 153-276 10-129 (146)
6 3hwu_A Putative DNA-binding pr 99.9 1.8E-24 6.2E-29 187.0 13.2 116 153-275 13-132 (147)
7 2ezd_A High mobility group pro 95.6 0.0056 1.9E-07 38.9 1.9 16 123-140 3-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 65.9 1.8 6E-05 36.2 0.9 14 73-86 3-16 (140)
9 1xv2_A ALDC, hypothetical prot 42.2 33 0.0011 31.6 5.4 94 164-262 98-202 (237)
10 1t3g_A X-linked interleukin-1 29.4 34 0.0012 28.9 3.0 36 150-185 40-77 (159)
11 4i95_A Putative uncharacterize 27.9 47 0.0016 28.7 3.6 34 179-214 37-70 (142)
12 1fyx_A TOLL-like receptor 2; b 20.6 47 0.0016 27.6 2.1 37 150-186 33-71 (149)
No 1
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.95 E-value=8.2e-28 Score=206.45 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=105.4
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329 153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS 229 (342)
Q Consensus 153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s 229 (342)
++|++||++||||+++|.+||+++.+..|+++++|+|++|+|++++.+. ..++++|+|||+||+|||.+.++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~---- 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE---- 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence 7999999999999999999998776666667999999999999998764 368999999999999999986532
Q ss_pred CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329 230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK 276 (342)
Q Consensus 230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~ 276 (342)
++.|||++|+|.||+|+||||...+ ++ ++||+|.+|.+..++|..
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~ 130 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP 130 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence 7999999999999999999999777 66 999999999997788764
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.95 E-value=8.3e-27 Score=200.62 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=103.9
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHh-CCccEEEEEeeceeeeEEEecccCCCCeeeeecceEEEEeeeeeeccCCCCCCCC
Q 019329 152 FTPHVITVKAGEDVSSKIMSFSQN-GPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSR 230 (342)
Q Consensus 152 f~phVIrV~~GEDIvekI~~Faq~-~~~a~cILSAiGAVSnVTLrq~~~sg~tvt~eG~FEILSLsGnis~~e~g~~~s~ 230 (342)
|++|++||++||||+++|.+||++ +.+++||++++|+|++|+|++++... +++|+|+|||+||+|||.+.
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------- 72 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------- 72 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence 799999999999999999999976 55578898999999999999999865 78999999999999999873
Q ss_pred CcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329 231 TGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK 276 (342)
Q Consensus 231 ~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~ 276 (342)
..|||++|+|.||+++||||+++++++.|+||+|.+|....++|..
T Consensus 73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~ 118 (142)
T 2p6y_A 73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREF 118 (142)
T ss_dssp CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEE
T ss_pred CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEee
Confidence 3799999999999999999997778889999999999887777653
No 3
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.95 E-value=8.2e-27 Score=203.28 Aligned_cols=121 Identities=28% Similarity=0.417 Sum_probs=108.5
Q ss_pred cCCCCceeEEEEEcCCCCHHHHHHHHHH-hCCccEEEEEeeceeeeEEEecccCCCCeeeeecceEEEEeeeeeeccCCC
Q 019329 147 SAGVGFTPHVITVKAGEDVSSKIMSFSQ-NGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESS 225 (342)
Q Consensus 147 ~~g~~f~phVIrV~~GEDIvekI~~Faq-~~~~a~cILSAiGAVSnVTLrq~~~sg~tvt~eG~FEILSLsGnis~~e~g 225 (342)
+....+++|++||++||||+++|.+||+ ++.+++||++++|+|++|+|||++... +++|+|+|||+||+|+|++.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 4567789999999999999999999996 566688999999999999999999865 78999999999999999873
Q ss_pred CCCCCCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329 226 GQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK 276 (342)
Q Consensus 226 ~~~s~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~ 276 (342)
..|||++|+|.||+|+||||++++++..|+||+|.+|....++|..
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~ 134 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQP 134 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEE
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEec
Confidence 3799999999999999999998778889999999999887676653
No 4
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=2.7e-27 Score=205.28 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=104.7
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329 153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS 229 (342)
Q Consensus 153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s 229 (342)
+.|++||++||||+++|.+||+++.+..|+++++|+|++|+|++++.+. ..++|+|+|||+||+|||.+.|+.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~---- 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ---- 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC----
Confidence 8999999999999999999998888877777999999999999998754 368999999999999999997532
Q ss_pred CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEeccccccccc
Q 019329 230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKES 275 (342)
Q Consensus 230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~ 275 (342)
++.|||++|+|.||+|+||||... ++..|+||+|.++.. .+.|.
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~ 135 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRT 135 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEE
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEe
Confidence 799999999999999999999976 788999999999987 45543
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.94 E-value=5.5e-27 Score=201.92 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=103.5
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329 153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS 229 (342)
Q Consensus 153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s 229 (342)
++|+|||++||||+++|.+||+++.+..|+++++|+|++|+|++++... ..++++|+|||+||+|||.+.++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~---- 85 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---- 85 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC----
Confidence 6999999999999999999998766655556999999999999998775 378999999999999999986532
Q ss_pred CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329 230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK 276 (342)
Q Consensus 230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~ 276 (342)
++.|||++|+ .||+|+||||.+.+ + .|+||+|.+|.+..++|..
T Consensus 86 p~~HlHi~l~-~~G~v~gGHl~~g~-V-~t~Evvi~~~~~~~~~R~~ 129 (146)
T 2h6l_A 86 PFCHIHVLLG-KDGEVYGGHLFSAE-V-FACEVFVLPLSGEAPERAF 129 (146)
T ss_dssp EEEEEEEEEE-EBTEEEEEEEEEEE-E-EEEEEEEEECBSCCCBEEE
T ss_pred ceeeEEEEEC-CCCcEEeeecCCCE-E-EEEEEEEEEcCCCcEEEeE
Confidence 7999999999 99999999999877 4 6999999999987777653
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.91 E-value=1.8e-24 Score=187.02 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=101.3
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329 153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS 229 (342)
Q Consensus 153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s 229 (342)
+.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+. ...+++ ++||+||+|||++.| + .
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G---~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-G---K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-T---E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-C---C
Confidence 6699999999999999999999988888889999999999999998764 246788 899999999999865 3 2
Q ss_pred CCcceEEEEeCCCCceEeeeccCCcEEc-ccEEEEEEeccccccccc
Q 019329 230 RTGGLSVSLSGPDGRVLGGSVAGLLTAA-TPVQVVVGSFLADGRKES 275 (342)
Q Consensus 230 ~~~HLHVSLAg~DGqViGGHL~g~lIAa-stVEVVV~sF~~~~~k~~ 275 (342)
++.|||++|+|.||+|+||||... ++. .|+||+|..+.. .+.|.
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g-~V~~~t~Ei~i~~~~~-~~~R~ 132 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGL-TVGTGSCEITVTVYPQ-RLDRF 132 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEE-EEEEEEEEEEEEEESS-CCBEE
T ss_pred ceEEEEEEEECCCCcEEeeEecCc-EEEeEeEEEEEEEcCC-eEEEE
Confidence 899999999999999999999977 566 599999998765 45443
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=95.57 E-value=0.0056 Score=38.94 Aligned_cols=16 Identities=50% Similarity=0.802 Sum_probs=13.7
Q ss_pred cccCCCCCCCCCCCCCcc
Q 019329 123 SIKKSRGRPPGSGSGKKH 140 (342)
Q Consensus 123 ~~kk~RGRP~GS~~~nK~ 140 (342)
..||+||||.||| ||.
T Consensus 3 tpKrpRgRpkGSK--Nk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSK--NKG 18 (26)
T ss_dssp SCCCCSSCCTTCC--CCS
T ss_pred CCcCCCCCcCccc--ccC
Confidence 3589999999999 875
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=65.90 E-value=1.8 Score=36.19 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=6.2
Q ss_pred ccccCCCCCCCCCC
Q 019329 73 MKRKRGRPRKYGPD 86 (342)
Q Consensus 73 ~kkKRGRPRKY~~d 86 (342)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 47999999999876
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=42.24 E-value=33 Score=31.59 Aligned_cols=94 Identities=11% Similarity=0.182 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCCC-------eeeeecceEEEEeeeeee----ccCCCCCCCCCc
Q 019329 164 DVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGG-------TVTYEGRFEILSLSGSFL----LSESSGQRSRTG 232 (342)
Q Consensus 164 DIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg~-------tvt~eG~FEILSLsGnis----~~e~g~~~s~~~ 232 (342)
++-+.|.+.. ...-.|-+-.-|..++|++|-...... .+.-+-.|++=...|++. +.--.+. -..
T Consensus 98 ~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~v~ 173 (237)
T 1xv2_A 98 VFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--GSA 173 (237)
T ss_dssp HHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--BCS
T ss_pred HHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--CCc
Confidence 3334444333 455678888899999999996532211 111122366666666664 3221121 233
Q ss_pred ceEEEEeCCCCceEeeeccCCcEEcccEEE
Q 019329 233 GLSVSLSGPDGRVLGGSVAGLLTAATPVQV 262 (342)
Q Consensus 233 HLHVSLAg~DGqViGGHL~g~lIAastVEV 262 (342)
++|+-+-+.| +.+||||.+--+-..++||
T Consensus 174 G~HlHFisdD-r~~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 174 GFHIHFADDE-RAYGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp EEEEEEEETT-SSCEEEEEEEEEEEEEEEE
T ss_pred eeEEEEEcCC-CCCCcceEEEEecceEEEE
Confidence 4444444434 4489999964444444444
No 10
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=29.40 E-value=34 Score=28.90 Aligned_cols=36 Identities=6% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCceeEEE--EEcCCCCHHHHHHHHHHhCCccEEEEEe
Q 019329 150 VGFTPHVI--TVKAGEDVSSKIMSFSQNGPRAVCILSA 185 (342)
Q Consensus 150 ~~f~phVI--rV~~GEDIvekI~~Faq~~~~a~cILSA 185 (342)
.+++..+- .+.+|++|++.|.+..++..+.++|||-
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 44554432 3779999999999999999999999985
No 11
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=27.90 E-value=47 Score=28.72 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.7
Q ss_pred cEEEEEeeceeeeEEEecccCCCCeeeeecceEEEE
Q 019329 179 AVCILSANGAISNVTLRQAATSGGTVTYEGRFEILS 214 (342)
Q Consensus 179 a~cILSAiGAVSnVTLrq~~~sg~tvt~eG~FEILS 214 (342)
..=|||.=|.+.|++++. + .+..++.+|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 466899999999999993 2 456899999999987
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=20.56 E-value=47 Score=27.56 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=29.6
Q ss_pred CCceeEEE--EEcCCCCHHHHHHHHHHhCCccEEEEEee
Q 019329 150 VGFTPHVI--TVKAGEDVSSKIMSFSQNGPRAVCILSAN 186 (342)
Q Consensus 150 ~~f~phVI--rV~~GEDIvekI~~Faq~~~~a~cILSAi 186 (342)
.+++..+= .+.+|++|.+.|.+..++..+.++|||-.
T Consensus 33 ~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 33 PPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp SCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 35655542 37899999999999999999999999863
Done!