Query 019330
Match_columns 342
No_of_seqs 121 out of 1184
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.5E-47 3.3E-52 368.9 25.8 300 26-337 57-366 (467)
2 KOG1303 Amino acid transporter 100.0 8.6E-48 1.9E-52 361.7 22.6 302 24-339 33-337 (437)
3 KOG1304 Amino acid transporter 100.0 7.3E-44 1.6E-48 330.0 24.1 296 26-341 44-354 (449)
4 PF01490 Aa_trans: Transmembra 100.0 1.8E-45 3.8E-50 351.1 -0.1 301 27-339 1-304 (409)
5 KOG1305 Amino acid transporter 100.0 4.1E-38 8.8E-43 294.8 15.1 303 26-340 3-312 (411)
6 PLN03074 auxin influx permease 100.0 4.7E-36 1E-40 288.2 24.3 289 24-336 41-340 (473)
7 COG0814 SdaC Amino acid permea 100.0 4.6E-30 9.9E-35 243.4 25.7 303 25-337 5-315 (415)
8 KOG4303 Vesicular inhibitory a 100.0 2.2E-32 4.8E-37 240.5 5.8 292 26-339 114-410 (524)
9 PRK10483 tryptophan permease; 99.8 5.4E-19 1.2E-23 165.7 26.0 294 25-338 7-314 (414)
10 PRK09664 tryptophan permease T 99.8 1.3E-18 2.9E-23 162.9 26.1 297 26-337 6-314 (415)
11 TIGR00837 araaP aromatic amino 99.8 5.1E-19 1.1E-23 167.4 22.3 291 35-338 3-300 (381)
12 PF03222 Trp_Tyr_perm: Tryptop 99.8 3.1E-18 6.7E-23 161.6 26.0 293 28-338 2-306 (394)
13 PRK15132 tyrosine transporter 99.8 1E-17 2.2E-22 157.7 25.5 288 29-338 3-303 (403)
14 PRK13629 threonine/serine tran 99.7 7.5E-15 1.6E-19 138.0 24.4 296 35-337 25-346 (443)
15 TIGR00814 stp serine transport 99.7 7.9E-14 1.7E-18 131.6 25.4 288 35-337 9-311 (397)
16 PRK11021 putative transporter; 99.3 1.8E-09 3.9E-14 103.2 24.4 229 30-276 2-231 (410)
17 PRK10435 cadB lysine/cadaverin 99.3 1.6E-09 3.4E-14 104.5 23.7 241 26-281 4-246 (435)
18 TIGR00909 2A0306 amino acid tr 99.2 4E-09 8.7E-14 101.5 25.2 240 26-278 2-251 (429)
19 PRK10655 potE putrescine trans 99.2 2.5E-09 5.5E-14 103.1 23.3 239 26-278 5-245 (438)
20 KOG3832 Predicted amino acid t 99.2 2.8E-10 6E-15 94.5 12.2 212 30-249 13-301 (319)
21 TIGR00906 2A0303 cationic amin 99.2 1.2E-08 2.6E-13 101.1 25.1 249 24-279 25-288 (557)
22 TIGR00912 2A0309 spore germina 99.2 6.5E-09 1.4E-13 97.7 21.3 286 29-337 3-296 (359)
23 TIGR01773 GABAperm gamma-amino 99.2 1.1E-08 2.3E-13 99.2 23.1 241 25-280 10-259 (452)
24 PRK10644 arginine:agmatin anti 99.1 1.8E-08 3.8E-13 97.5 23.5 241 25-280 6-249 (445)
25 TIGR00905 2A0302 transporter, 99.1 2.1E-08 4.4E-13 97.8 23.8 244 26-279 6-255 (473)
26 PRK10249 phenylalanine transpo 99.1 8E-08 1.7E-12 93.3 26.1 241 25-280 19-267 (458)
27 PRK11387 S-methylmethionine tr 99.1 8.5E-08 1.8E-12 93.4 26.2 245 25-282 12-266 (471)
28 PRK11049 D-alanine/D-serine/gl 99.0 1.3E-07 2.9E-12 92.0 25.5 240 25-278 18-267 (469)
29 TIGR03810 arg_ornith_anti argi 99.0 3.5E-07 7.6E-12 89.1 25.8 246 28-282 2-254 (468)
30 PRK10836 lysine transporter; P 99.0 7.2E-07 1.6E-11 87.3 27.3 243 25-281 13-264 (489)
31 PF13520 AA_permease_2: Amino 99.0 6.4E-08 1.4E-12 93.0 19.2 240 30-284 2-248 (426)
32 TIGR00913 2A0310 amino acid pe 99.0 6.9E-07 1.5E-11 87.2 26.5 238 27-276 2-251 (478)
33 PRK10238 aromatic amino acid t 98.9 5.6E-07 1.2E-11 87.3 25.5 236 25-273 10-251 (456)
34 PRK15049 L-asparagine permease 98.9 6.3E-07 1.4E-11 87.9 25.9 244 25-282 26-280 (499)
35 PRK10580 proY putative proline 98.9 5.3E-07 1.2E-11 87.5 25.0 239 25-277 7-254 (457)
36 TIGR00930 2a30 K-Cl cotranspor 98.9 9E-08 2E-12 99.7 20.7 244 27-277 76-335 (953)
37 TIGR00908 2A0305 ethanolamine 98.9 2.7E-07 5.9E-12 89.1 22.2 238 25-275 5-244 (442)
38 PRK10746 putative transport pr 98.9 1.1E-06 2.3E-11 85.5 26.1 243 25-281 8-259 (461)
39 TIGR00911 2A0308 L-type amino 98.9 4.1E-07 8.9E-12 89.4 22.7 249 24-280 39-293 (501)
40 PRK11357 frlA putative fructos 98.9 4.2E-07 9.2E-12 87.9 22.5 241 25-277 6-250 (445)
41 PRK10197 gamma-aminobutyrate t 98.9 1.7E-06 3.6E-11 83.8 25.9 225 39-277 4-236 (446)
42 PF03845 Spore_permease: Spore 98.9 7.2E-07 1.6E-11 82.5 21.9 229 30-284 3-236 (320)
43 KOG1287 Amino acid transporter 98.8 1.3E-07 2.9E-12 89.6 15.7 245 24-280 9-262 (479)
44 COG0531 PotE Amino acid transp 98.7 8.1E-06 1.8E-10 79.2 25.2 248 26-283 11-262 (466)
45 TIGR03428 ureacarb_perm permea 98.6 2.4E-05 5.3E-10 76.3 25.4 249 25-282 11-273 (475)
46 COG1113 AnsP Gamma-aminobutyra 98.4 0.00015 3.2E-09 68.4 21.9 245 26-286 12-272 (462)
47 TIGR00907 2A0304 amino acid pe 98.2 0.00031 6.7E-09 68.7 22.4 251 25-282 10-277 (482)
48 PRK15238 inner membrane transp 98.2 0.00049 1.1E-08 67.6 23.6 239 26-277 6-266 (496)
49 PF00324 AA_permease: Amino ac 98.2 1.3E-05 2.9E-10 78.3 12.1 239 39-285 7-263 (478)
50 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.0014 3E-08 63.5 25.4 185 95-285 76-274 (442)
51 PRK11375 allantoin permease; P 98.1 0.0068 1.5E-07 59.3 28.9 295 16-335 14-339 (484)
52 COG3949 Uncharacterized membra 98.1 0.00093 2E-08 60.4 20.4 136 33-184 7-147 (349)
53 TIGR00910 2A0307_GadC glutamat 98.1 0.0027 5.9E-08 62.5 24.5 51 224-275 196-247 (507)
54 TIGR02358 thia_cytX probable h 98.0 0.0057 1.2E-07 58.1 25.2 226 31-284 7-234 (386)
55 KOG1286 Amino acid transporter 98.0 0.00012 2.7E-09 71.9 13.5 248 24-277 27-287 (554)
56 COG0833 LysP Amino acid transp 97.9 0.0014 3E-08 63.2 18.5 236 25-273 42-285 (541)
57 TIGR03813 put_Glu_GABA_T putat 97.9 0.0015 3.3E-08 63.8 19.4 52 230-282 202-254 (474)
58 PRK09442 panF sodium/panthothe 97.7 0.068 1.5E-06 52.4 26.7 158 20-189 34-195 (483)
59 TIGR02119 panF sodium/pantothe 97.6 0.092 2E-06 51.2 26.7 157 21-189 34-194 (471)
60 PF02554 CstA: Carbon starvati 97.5 0.0089 1.9E-07 55.2 16.6 157 13-187 40-198 (376)
61 PRK11017 codB cytosine permeas 97.4 0.12 2.6E-06 49.4 24.3 174 94-284 70-245 (404)
62 TIGR00813 sss transporter, SSS 97.3 0.14 3E-06 48.9 24.0 149 27-188 3-152 (407)
63 PRK12488 acetate permease; Pro 97.3 0.13 2.7E-06 51.4 24.0 159 18-190 58-218 (549)
64 PRK09395 actP acetate permease 97.2 0.19 4.1E-06 50.1 23.9 157 18-187 60-217 (551)
65 TIGR02711 symport_actP cation/ 97.1 0.25 5.5E-06 49.2 23.9 156 19-188 59-216 (549)
66 COG1457 CodB Purine-cytosine p 97.0 0.34 7.4E-06 46.4 23.9 180 97-294 83-268 (442)
67 KOG2466 Uridine permease/thiam 97.0 0.16 3.5E-06 48.5 19.4 275 4-296 34-334 (572)
68 PF02133 Transp_cyt_pur: Perme 96.7 0.036 7.8E-07 53.6 13.7 239 26-279 6-258 (440)
69 COG0591 PutP Na+/proline sympo 96.3 1.2 2.7E-05 43.7 27.1 148 26-185 37-188 (493)
70 PF00474 SSF: Sodium:solute sy 96.3 0.22 4.7E-06 47.6 15.9 150 26-188 5-156 (406)
71 COG1966 CstA Carbon starvation 96.2 0.22 4.7E-06 48.4 14.8 111 16-137 43-155 (575)
72 PRK15015 carbon starvation pro 96.2 0.2 4.3E-06 49.8 14.7 142 30-186 84-229 (701)
73 TIGR00835 agcS amino acid carr 96.0 0.33 7.2E-06 46.4 15.2 81 28-110 46-132 (425)
74 PRK15419 proline:sodium sympor 95.8 2.1 4.6E-05 42.1 24.7 162 18-188 31-196 (502)
75 TIGR03648 Na_symport_lg probab 95.8 2.4 5.1E-05 42.4 22.1 156 19-187 24-180 (552)
76 KOG1289 Amino acid transporter 95.7 0.37 7.9E-06 46.9 14.1 247 31-283 55-313 (550)
77 TIGR00796 livcs branched-chain 95.3 0.45 9.8E-06 44.9 13.3 79 96-182 256-334 (378)
78 KOG1288 Amino acid transporter 95.3 0.065 1.4E-06 53.1 7.5 54 223-277 295-349 (945)
79 KOG2083 Na+/K+ symporter [Inor 95.2 0.11 2.3E-06 50.9 8.7 227 33-274 39-275 (643)
80 PF05525 Branch_AA_trans: Bran 95.2 0.23 5E-06 47.5 10.9 78 96-181 262-339 (427)
81 COG1953 FUI1 Cytosine/uracil/t 94.4 5.4 0.00012 38.8 28.0 195 93-295 101-319 (497)
82 PRK10484 putative transporter; 94.2 6.4 0.00014 39.0 26.7 165 18-189 29-198 (523)
83 TIGR02121 Na_Pro_sym sodium/pr 93.7 7.5 0.00016 38.1 24.0 160 21-188 30-192 (487)
84 COG1114 BrnQ Branched-chain am 93.7 1.6 3.5E-05 41.2 12.5 120 52-184 224-344 (431)
85 TIGR00796 livcs branched-chain 91.2 14 0.0003 35.0 23.4 67 36-112 2-71 (378)
86 COG4147 DhlC Predicted symport 91.0 16 0.00035 35.4 16.9 221 45-280 60-294 (529)
87 PRK15433 branched-chain amino 90.4 4.9 0.00011 38.7 11.9 78 97-183 267-344 (439)
88 PRK15433 branched-chain amino 89.9 19 0.00042 34.7 17.7 285 30-337 9-310 (439)
89 PF01566 Nramp: Natural resist 87.2 26 0.00056 32.8 17.3 79 96-182 43-123 (358)
90 PF00209 SNF: Sodium:neurotran 83.6 49 0.0011 32.8 17.6 107 223-338 250-379 (523)
91 PF05525 Branch_AA_trans: Bran 83.5 44 0.00095 32.2 19.1 282 30-335 4-304 (427)
92 PF01235 Na_Ala_symp: Sodium:a 81.7 51 0.0011 31.7 18.0 49 26-75 16-65 (416)
93 COG0733 Na+-dependent transpor 71.1 1E+02 0.0022 29.8 19.0 292 28-338 8-336 (439)
94 PHA02764 hypothetical protein; 70.9 88 0.0019 28.9 14.8 89 24-119 9-100 (399)
95 KOG2082 K+/Cl- cotransporter K 68.8 28 0.0006 35.8 8.4 110 26-139 112-222 (1075)
96 PRK00701 manganese transport p 62.3 1.6E+02 0.0034 28.6 20.1 45 96-141 95-139 (439)
97 PF02468 PsbN: Photosystem II 53.4 14 0.00031 22.9 2.2 28 258-285 4-31 (43)
98 PRK13183 psbN photosystem II r 53.0 17 0.00037 22.9 2.5 31 255-285 4-34 (46)
99 CHL00020 psbN photosystem II p 50.1 15 0.00033 22.8 2.0 29 257-285 3-31 (43)
100 PF04133 Vps55: Vacuolar prote 45.5 92 0.002 24.2 6.2 50 32-81 60-110 (120)
101 KOG2174 Leptin receptor gene-r 44.6 62 0.0013 25.2 5.0 40 31-70 65-105 (131)
102 COG1914 MntH Mn2+ and Fe2+ tra 41.4 3.3E+02 0.0072 26.2 19.2 46 96-142 78-123 (416)
103 TIGR00909 2A0306 amino acid tr 34.4 4.1E+02 0.0089 25.2 13.9 47 96-143 265-311 (429)
104 PF11085 YqhR: Conserved membr 33.3 1.6E+02 0.0034 24.5 6.0 87 109-201 68-155 (173)
105 PF01235 Na_Ala_symp: Sodium:a 32.7 3.8E+02 0.0082 25.8 9.4 79 102-187 300-378 (416)
106 TIGR00327 secE_euk_arch protei 32.2 52 0.0011 22.2 2.6 32 245-280 18-49 (61)
107 COG3476 Tryptophan-rich sensor 29.8 1.1E+02 0.0024 25.1 4.6 56 226-285 15-72 (161)
108 TIGR03750 conj_TIGR03750 conju 29.2 2.6E+02 0.0057 21.4 7.1 73 9-85 2-75 (111)
109 PHA02680 ORF090 IMV phosphoryl 28.8 2.3E+02 0.005 20.6 6.1 59 226-287 15-74 (91)
110 TIGR00842 bcct choline/carniti 28.2 5.7E+02 0.012 24.9 11.1 25 27-51 35-59 (453)
111 KOG2349 Na+:iodide/myo-inosito 27.1 4E+02 0.0087 26.9 8.8 235 30-281 48-298 (585)
112 PF11990 DUF3487: Protein of u 26.9 3.1E+02 0.0066 21.4 6.9 72 8-84 4-77 (121)
113 cd08764 Cyt_b561_CG1275_like N 26.8 3.8E+02 0.0083 23.2 7.7 98 221-329 26-123 (214)
114 PRK09400 secE preprotein trans 26.5 95 0.0021 21.0 3.1 32 245-280 22-53 (61)
115 KOG1289 Amino acid transporter 25.7 6.9E+02 0.015 25.0 13.2 47 96-143 326-372 (550)
116 TIGR00964 secE_bact preprotein 25.1 1.2E+02 0.0026 19.8 3.4 19 240-258 5-26 (55)
117 PF03073 TspO_MBR: TspO/MBR fa 24.5 1.8E+02 0.0038 23.3 5.0 51 231-284 12-63 (148)
118 KOG1287 Amino acid transporter 22.9 7.4E+02 0.016 24.4 10.6 75 98-174 276-358 (479)
119 PTZ00478 Sec superfamily; Prov 22.6 1.1E+02 0.0023 22.0 2.9 33 244-280 34-66 (81)
120 COG1292 BetT Choline-glycine b 22.6 4.6E+02 0.0099 26.1 8.1 44 96-141 176-219 (537)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-47 Score=368.92 Aligned_cols=300 Identities=18% Similarity=0.228 Sum_probs=246.5
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
-+.|+..++.+|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|.++.++ .+.+ +|+|++++++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~--sY~~la~~~~ 131 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIR--TYEGVARVLL 131 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCC--CHHHHHHHHh
Confidence 5667779999999999999999999999999999999999999999999999999999876 3444 9999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-CCC---Cc-hHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNG---SL-KLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~---~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 180 (342)
|| +|++++++.+.++++|+|++|+++.+|.++.+++... ++. .. +...+.++..++++|++++|++++|+++|.
T Consensus 132 G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 132 GP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 99 7999999999999999999999999999999876421 110 01 112233456678999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcc---hh-hHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK---SA-RIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM 255 (342)
Q Consensus 181 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~ 255 (342)
+++.++++.++++++.++.++.+++.+..+...++.. .. ...+.+.++|+++||| ||.+.+++++|||+|+.+|+
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~ 290 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF 290 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH
Confidence 9998777776666666665443322111111000000 00 1136889999999999 99999999999999998889
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHH
Q 019330 256 VKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLF 335 (342)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~ 335 (342)
.+++..++.+++++|..+|++||++||+++++|++.|+++.+++ ...+++++.++.++.+||++.+|+|+.+++
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~------~~~v~~~~~~~~v~~sypL~~~p~r~~i~~ 364 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEP------AIMVGFVGVLVKLFVSYALLGMACRNALYD 364 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCc------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999654433 577888889999999999999999999887
Q ss_pred HH
Q 019330 336 QF 337 (342)
Q Consensus 336 ~~ 337 (342)
.+
T Consensus 365 ~~ 366 (467)
T PTZ00206 365 VI 366 (467)
T ss_pred Hh
Confidence 54
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-48 Score=361.67 Aligned_cols=302 Identities=31% Similarity=0.546 Sum_probs=271.2
Q ss_pred eeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccc-cccCcccccHHHHHH
Q 019330 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAA 102 (342)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~-~~~~~~~~sy~~l~~ 102 (342)
-.+|++||+++.+|.++.++|.|+|+|||++++.||+.|+++++..++++.||..+|.+|.+.+ .+.++|+.+|+|+++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 3477789999999999999999999999999999999999999999999999999999999875 456677789999999
Q ss_pred HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCC-CchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (342)
Q Consensus 103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (342)
++||++ +++++.+.+.+.++|+|+.|++..+|++..+++..+.+. ..+.+.|+++++++.+|++++||++.+++.|..
T Consensus 113 ~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~ 191 (437)
T KOG1303|consen 113 AAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLV 191 (437)
T ss_pred HHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHH
Confidence 999995 589999999999999999999999999999999877665 555678999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330 182 SLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL 260 (342)
Q Consensus 182 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (342)
+.++++.+..+.+..++.++.+.+.+..++.-.++.+. .++++|+++|+| +|+++||||++||+|.+ |+|++.
T Consensus 192 ~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~----~f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~~~l 265 (437)
T KOG1303|consen 192 GAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT----VFTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKKALL 265 (437)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc----hhhhhhheeeeecCCeeeeehHhhcCCchh--hhhHHH
Confidence 99999999999999888888665443333333322211 189999999999 99999999999999997 899999
Q ss_pred HHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHhh
Q 019330 261 MCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLA 339 (342)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~ 339 (342)
+++.+++.+|+..++.||++|||+++||++.|++ ++.|+...+++++.+|++.+|+++.+|+.+.+|...-.
T Consensus 266 is~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~-------~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~ 337 (437)
T KOG1303|consen 266 ISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ-------PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGV 337 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhhhhccc-------CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhcc
Confidence 9999999999999999999999999999999997 25789999999999999999999999999999986543
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-44 Score=329.97 Aligned_cols=296 Identities=16% Similarity=0.212 Sum_probs=257.0
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccc-cccCcccccHHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAADV 104 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~-~~~~~~~~sy~~l~~~~ 104 (342)
++..|..++..|++|.++|+|+|++|++|+++||+.|.+..+++++++.||++.+++|.++. ++.+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999999999999998763 44444446888887766
Q ss_pred h----------CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcc
Q 019330 105 L----------GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS 174 (342)
Q Consensus 105 ~----------G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 174 (342)
+ |+ ++|.++++.+.++++|.|++|++++++.++++.+. +.+..++.+.|+++..+..++++++|+++.
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~-~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~ 201 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE-HSPGVLSVRLYILIQLPPLLLLNLIRNLKI 201 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc-cCCCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4 55 78899999999999999999999999999999983 223467788899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCcccc
Q 019330 175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATG 253 (342)
Q Consensus 175 l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~ 253 (342)
|+.+|.+++++.+....++.++.+.... +.++.+.. .++.++...+|+.+||| +++++.|++++||+|++
T Consensus 202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~----~~~~~~~~----~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~- 272 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAIIMYYLVQDLP----PTSDLPAV----TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK- 272 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC----Cccccccc----cchhhhHHHHHHHHHHhccceEEEehhhcccChhh-
Confidence 9999999999888777666666555443 11232322 22457888899999999 99999999999999997
Q ss_pred chh---hHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhh
Q 019330 254 KMV---KGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHS 330 (342)
Q Consensus 254 ~~~---~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~ 330 (342)
+. +++..++.++.++|..+|++||++|||++++.++.|+|+ +|+.+.+++++++.++.+||+|.+|..
T Consensus 273 -F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~--------~~l~~~Vkl~~ai~I~ls~pLQ~yv~~ 343 (449)
T KOG1304|consen 273 -FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ--------EILSQTVKLLLAIAIFLTYPLQFYVPI 343 (449)
T ss_pred -cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc--------cHHHHHHHHHHHHHHHHcCchhhhhhH
Confidence 56 999999999999999999999999999999999999994 578999999999999999999999999
Q ss_pred hhHHHHHhhhc
Q 019330 331 SLQLFQFLAKM 341 (342)
Q Consensus 331 ~~~~~~~~~~~ 341 (342)
+++|++..+|.
T Consensus 344 eIi~~~i~~k~ 354 (449)
T KOG1304|consen 344 EIIEPGIRKKF 354 (449)
T ss_pred HHHHHhHHHhc
Confidence 99999877664
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.8e-45 Score=351.12 Aligned_cols=301 Identities=24% Similarity=0.397 Sum_probs=256.2
Q ss_pred cCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (342)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (342)
+|+|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.+++++.+ ++++..+|+|++++++|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999988643 22345699999999999
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 019330 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186 (342)
Q Consensus 107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 186 (342)
| ++++++++++.+.++|.+++|++..+|.++++.+...++...+...+.++..++++|++++|++++++++|.++++++
T Consensus 80 ~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 80 P-KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 9 578999999999999999999999999999998865544455666677788899999999999999999999999876
Q ss_pred HHHHHHhhhhhhccCcCCCCCCCCccccC-cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccc-cchhhHHHHHH
Q 019330 187 LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPAT-GKMVKGLLMCY 263 (342)
Q Consensus 187 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~-~~~~~~~~~~~ 263 (342)
++...+.+.........+. .+.+..+ .+..++.+++.++|+++|+| ||.++|++++|||+|++ +|++++...++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~ 235 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEP---SGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISM 235 (409)
T ss_pred ceeeeeecceeeeeecccc---cccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehh
Confidence 6542233332222221111 1111111 12345678999999999999 99999999999999998 67889999999
Q ss_pred HHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHhh
Q 019330 264 SVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLA 339 (342)
Q Consensus 264 ~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~ 339 (342)
.+++++|+.+|+.||++||+++++|++.|+++++ +...++++++.++++.+||++.+|.++.+|+.+.+
T Consensus 236 ~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~-------~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~ 304 (409)
T PF01490_consen 236 IICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD-------VLIIIARILLVISLLLSYPLQLFPARNSLENLLFK 304 (409)
T ss_pred hhhhHHhhhhhhcccceeeeeecchhhhcCCCcc-------cccccccccchhhhhhccccccchhHhhhhhheec
Confidence 9999999999999999999999999999999743 47899999999999999999999999999996654
No 5
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-38 Score=294.84 Aligned_cols=303 Identities=17% Similarity=0.216 Sum_probs=250.6
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
.++.|.+++++|+.|+++|+|++++|++|++.|++.|+++++++++++.++.+++.++.+. .+.+ +|++++++.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~---~~~~--ty~~l~~~~~ 77 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK---SGER--TYSSLGDLIF 77 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh---cCCC--CHHHHHHHHc
Confidence 4556789999999999999999999999999999999999999999999999999999887 4455 9999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-CCC-C--chHH-H-HHHHHHHHHHHHhcCCCCcchhHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNG-S--LKLY-E-FIAMVTVVMIVLSQLPTFHSLRHIN 179 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~-~--~~~~-~-~~~i~~~i~~pl~~~~~l~~l~~~s 179 (342)
|+ .|+....+.......| +++|+++++|.++.+..... +++ . +..+ . +++....+++|+++.|+++++++.|
T Consensus 78 g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS 155 (411)
T KOG1305|consen 78 GK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTS 155 (411)
T ss_pred CC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 99 6866666666666666 69999999999997665432 111 1 2222 2 4566779999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhH
Q 019330 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKG 258 (342)
Q Consensus 180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~ 258 (342)
.++...+++.+++++++.+..... . .+..........+++.+.++++++|+| ||.|..++++|||+|+++|++++
T Consensus 156 ~~s~~~~~~fv~~vv~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v 231 (411)
T KOG1305|consen 156 ALSLASVVYFVVLVVYKYFQGPCA-L---GRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-c---CCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence 999998888888888777664420 0 011111111122358999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330 259 LLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL 338 (342)
Q Consensus 259 ~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~ 338 (342)
...+...+.++|..+|.+||+.|||.+.+|++.+++.+++. .-..+....++..++++++..+|+..+|+|.+++++..
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~-~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNN-LLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccch-hHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 99999999999999999999999999999999999976543 11225678999999999999999999999999988665
Q ss_pred hh
Q 019330 339 AK 340 (342)
Q Consensus 339 ~~ 340 (342)
++
T Consensus 311 ~~ 312 (411)
T KOG1305|consen 311 PY 312 (411)
T ss_pred cc
Confidence 43
No 6
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.7e-36 Score=288.17 Aligned_cols=289 Identities=20% Similarity=0.255 Sum_probs=233.2
Q ss_pred eeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccc-cccCc-----c-c-c
Q 019330 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGR-----R-H-I 95 (342)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~-~~~~~-----~-~-~ 95 (342)
..+++++..++.+|+++..+|+|+|+||++|+++||++|++.+++.++++.||.+++.+++..+ ++.++ + + .
T Consensus 41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 4466778999999999999999999999999999999999999999999999999999874321 11111 1 1 3
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (342)
+|.|+++..+|| +++.+..+...+++++.|+.|++..++.+..+- ...+.+.|++++.++.+|++++|+++++
T Consensus 121 ~~~e~~~~~~G~-~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------~~~~~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 121 QWFEVLDGLLGP-YWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DNLDKRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHHHHHhcCh-hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence 689999999999 466888888999999999999998777666552 2455667878888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 176 RHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 176 ~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
+++|.+|+.++++..+.+++..+..+..+ +.+ +..+.++..++.++++++|+| +|.++|++++|||+|++
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~-----~~~--~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~-- 264 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVE-----GVK--HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-- 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCC--CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhc--
Confidence 99999999876665554444444433211 111 111234557888899999999 99999999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhccCCCCc--hhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhh
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGYWAFGNESN--SNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSL 332 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~--~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~ 332 (342)
++++...+....+++|+.+|+.||++|||+++ ++.+.|+|++ . ...+++++.+++++.+||++..|+.+.
T Consensus 265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-------~-~~~~~~~~~~i~~~~sy~l~~~p~~~~ 336 (473)
T PLN03074 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-------G-WRDAAVILMLIHQFITFGFACTPLYFV 336 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-------h-HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 67888899999999999999999999999975 4667778741 2 367889999999999999999999999
Q ss_pred HHHH
Q 019330 333 QLFQ 336 (342)
Q Consensus 333 ~~~~ 336 (342)
+|+.
T Consensus 337 ~e~~ 340 (473)
T PLN03074 337 WEKA 340 (473)
T ss_pred HHHH
Confidence 9874
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=4.6e-30 Score=243.38 Aligned_cols=303 Identities=17% Similarity=0.104 Sum_probs=237.8
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.+.+.+..++++++.++++|+|+|++|++++..|+.++++++++.+.+++++.+++.|+..+.+ +++.++.+++++.
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~---~~~~~~~~~~~~~ 81 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSP---NGKASITSLVEDY 81 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccHHHHHHHH
Confidence 4666778999999999999999999999999999999999999999999999999999998742 2224899999999
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
+||+ +++++++...+.+++.+.+|.+..++.+++.++.....+......+.+++..++.++++.++...++..+.+...
T Consensus 82 ~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 82 LGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred hCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 9995 679999999999999999999999999999998632222244455667777888889999999999999999998
Q ss_pred HHHHHHHHhhhhhhccCcCCCCCCCCccccCcc-hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC 262 (342)
Q Consensus 185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (342)
.+.+.++...+....-..+ .....+.. +..+.....++|+++||| ||+++|++++|||++++++.+|+...+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~ 234 (415)
T COG0814 161 KVIYLVLLVVYLIPHWNPA------NLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG 234 (415)
T ss_pred HHHHHHHHHHHHhcccCHH------HHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence 7666655544433221110 00011111 234568899999999999 999999999999998886699999999
Q ss_pred HHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCC------CChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHH
Q 019330 263 YSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS------LAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQ 336 (342)
Q Consensus 263 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~------~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~ 336 (342)
..+..++|...++++|..+|+.+++|+++++++++... ....+......++..+.+..||--....++|.+++.
T Consensus 235 ~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~ 314 (415)
T COG0814 235 SLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADL 314 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHH
Confidence 99999999999999999999999999999997644321 112224444555555555565555555555555554
Q ss_pred H
Q 019330 337 F 337 (342)
Q Consensus 337 ~ 337 (342)
+
T Consensus 315 ~ 315 (415)
T COG0814 315 F 315 (415)
T ss_pred H
Confidence 3
No 8
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-32 Score=240.45 Aligned_cols=292 Identities=17% Similarity=0.181 Sum_probs=242.8
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccC---cccccHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAG---RRHIRFRELAA 102 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~---~~~~sy~~l~~ 102 (342)
+++-+.++|..|+.|++-|.=+++||++....||. ++..++.++.+++||..+|++|.......+ +...+|.+++.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 35568999999999999999999999999988887 999999999999999999999976521111 11359999999
Q ss_pred HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 019330 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (342)
Q Consensus 103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (342)
.+++++.|-..+.+.+.+....+|+.|++..+|.+..-++. .+...+-|+++....++|++++|+++-.+.+|.+.
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~----~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c 268 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG----LSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC 268 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC----CCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999888788999999999999999999999999988764 34566779999999999999999998888888777
Q ss_pred HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcc-hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL 260 (342)
Q Consensus 183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (342)
.+.-++.=++++.++.... .|+.+.... ..+...+..++|+++|+| .|..+|.++..|++|++ +...+.
T Consensus 269 t~sH~viN~i~v~YCLs~~-------~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~--Fn~Ml~ 339 (524)
T KOG4303|consen 269 TISHLVINLIMVLYCLSFV-------SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ--FNVMLK 339 (524)
T ss_pred HHHHHHHHHHHHHHHHHHh-------hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH--heeeee
Confidence 7665555556666666544 133322111 122335677889999999 99999999999999998 455677
Q ss_pred HHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHhh
Q 019330 261 MCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLA 339 (342)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~ 339 (342)
++-+...++-..+|..||++|+|.++..|.+|+|+.+ ...+++++.++.-+.|||+-.+.+.+.+|+.+..
T Consensus 340 WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs--------fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~ 410 (524)
T KOG4303|consen 340 WSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS--------FKILVNLFLVVKALLSYPLPFYAAVELLENNLFL 410 (524)
T ss_pred hHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc--------hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhc
Confidence 8888888999999999999999999999999999532 6888999999999999999999999999986654
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.85 E-value=5.4e-19 Score=165.69 Aligned_cols=294 Identities=13% Similarity=0.069 Sum_probs=207.9
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.+++++.+.+...+..+.||+|+|++|.+.++.|++++++++++++.+..||..++.|+..+. ++..++.+++|+.
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~----~~g~~~~tma~~~ 82 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY----RIGSSFDTITKDL 82 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHH
Confidence 477889999999999999999999999999999999999999999999999999999997652 2345899999999
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC--CCcchhHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP--TFHSLRHINLVS 182 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~ 182 (342)
+|| .|+++..++..+..|+.+++|+...++.+++.++.. +...+...-.++++++.-.+.+.. ..+.+..+-..+
T Consensus 83 LG~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~ 159 (414)
T PRK10483 83 LGK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGA 159 (414)
T ss_pred cCh-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999 588999999999999999999999999999998652 122233333455555555565542 233333333333
Q ss_pred HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHH
Q 019330 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLM 261 (342)
Q Consensus 183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (342)
.+.++...+.... .+...++. .+.+. .. ...+...+.+++++++|| .|+++|++.+.+++..+ |.+|++..
T Consensus 160 ~i~~f~~~~~~l~---~~i~~~~L--~~~~~-~~-~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~-kir~~I~i 231 (414)
T PRK10483 160 KVITFFLTFGSLL---GHVQPATL--FNVAE-SN-ASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPK-TIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHH---hhcCHHHH--hcccc-cc-chhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHH-HHHHHHHH
Confidence 3322222221211 11110000 00000 01 111335779999999999 99999999999886554 68999999
Q ss_pred HHHHHHHHHHHHhhHhhhcc-----------CCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhh
Q 019330 262 CYSVIFVTFYSAAVSGYWAF-----------GNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHS 330 (342)
Q Consensus 262 ~~~~~~~~y~~~g~~gy~~f-----------g~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~ 330 (342)
+..+..++|+..=......- +++. +..+..+... .+..+...+..++..+++.+||--....++
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~----~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~ 306 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGV----LNSRSLDLLLVVFSNFAVASSFLGVTLGLF 306 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997433322222 2222 1111222211 123456678889999999999999999999
Q ss_pred hhHHHHHh
Q 019330 331 SLQLFQFL 338 (342)
Q Consensus 331 ~~~~~~~~ 338 (342)
|.+.+.+-
T Consensus 307 d~l~D~~k 314 (414)
T PRK10483 307 DYLADLFG 314 (414)
T ss_pred HHHHHHhC
Confidence 99998653
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.84 E-value=1.3e-18 Score=162.91 Aligned_cols=297 Identities=13% Similarity=0.059 Sum_probs=203.6
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
++|++.+.+...+..+.||+|+|++|.+.++.|+.++++++++++.+..||..++.|++.+. ++..++.+++|+.+
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~----~~g~~l~tma~~~L 81 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY----PVGSSFNTITKDLI 81 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHc
Confidence 44557788999999999999999999999999999999999999999999999999997663 23458999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (342)
|| .|+++..++..+..++.+++|+...++.+++.++... +...+.....++++++.-++.+... +...+.+.+=+..
T Consensus 82 G~-~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~ 158 (415)
T PRK09664 82 GN-TWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISS-LAASRITSLFLGL 158 (415)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHH
Confidence 99 5899999999999999999999999999999986411 1122223233555566666665532 4444443332222
Q ss_pred HHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHH
Q 019330 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYS 264 (342)
Q Consensus 186 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~ 264 (342)
.+...+..+.....+...+.. .+.+........+...+.+++++++|| .|+++|++.+.+++..+ |.+|++..+..
T Consensus 159 ~ii~f~~~~~~l~~~i~~~~L--~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~-~~~kaIl~Gs~ 235 (415)
T PRK09664 159 KIISFVIVFGSFFFQVDYSIL--RDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKD-KLIKSVVFGSL 235 (415)
T ss_pred HHHHHHHHHHHHhhcccHHHH--hcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHH-HHHHHHHHHHH
Confidence 222211111111111110000 000100000001235778999999999 99999999999875543 57889999998
Q ss_pred HHHHHHHHH--hhHhh---------hccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhH
Q 019330 265 VIFVTFYSA--AVSGY---------WAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQ 333 (342)
Q Consensus 265 ~~~~~y~~~--g~~gy---------~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~ 333 (342)
+..++|+.- ++.|- ..-|++++.-+.. +..+ ....|...+..++..+++.+||--....++|.+
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s-~~~~----~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKS-FLGT----KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHH-HHhh----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888632 22231 2233333332222 1111 124577888999999999999999999999999
Q ss_pred HHHH
Q 019330 334 LFQF 337 (342)
Q Consensus 334 ~~~~ 337 (342)
.+.+
T Consensus 311 ~D~~ 314 (415)
T PRK09664 311 ADLF 314 (415)
T ss_pred HHHh
Confidence 9865
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.84 E-value=5.1e-19 Score=167.42 Aligned_cols=291 Identities=14% Similarity=0.075 Sum_probs=207.2
Q ss_pred HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHH
Q 019330 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (342)
Q Consensus 35 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v 114 (342)
...++++++|+|++++|..+++.|+..+.+.+++.+..+.++...+.|...+.| + ..++.+.+++.+|| ++.+++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~--~~~~~~~~~~~~G~-~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--G--GASFNTIAKDLLGK-TGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHhCH-HHHHHH
Confidence 445679999999999999999999999999999999999999999999976532 2 23899999999999 677999
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhh
Q 019330 115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194 (342)
Q Consensus 115 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i 194 (342)
.+...+.++..+.+|.+..++.+.++++..... ........+++.+++.++... ..+...+++.+.+...+...++.+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~-G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF-PWSARAIVLIFTVLFGSFVWL-STSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988642211 122222333344444555444 567777887777765554443333
Q ss_pred hhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHH
Q 019330 195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSA 273 (342)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~ 273 (342)
.....+...++. . +.. ..+..+.+...+++...++| +|.+++++.+|+++| +||.+|++.++..++.++|++.
T Consensus 156 i~~~~~~~~~~~--~--~~~-~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 156 SGLLPHVKGDLL--L--DVA-LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHhhccHHHH--h--cCc-cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333332211110 0 000 00113347889999999999 999999999999877 5579999999999999999988
Q ss_pred hhHhhhccCCCCchhhhccCCCCCC------CCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330 274 AVSGYWAFGNESNSNILKSLMPDNG------PSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL 338 (342)
Q Consensus 274 g~~gy~~fg~~~~~~il~~~~~~~~------~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~ 338 (342)
........+.+.-.+...+.++.+. ...+..|...+..++..+.+++|+.-...+.+|.+.+.|-
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~ 300 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFK 300 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7776666554322221111111000 0012345677888999999999999999999999887553
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.83 E-value=3.1e-18 Score=161.63 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=201.4
Q ss_pred CChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCc
Q 019330 28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS 107 (342)
Q Consensus 28 ~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~ 107 (342)
+.+.+.+.+.+..+.+|+|+|+||.+.+..|..++++++++.+.+.+++..++.|...+. + +..++.+++++.+||
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~---~-~~~~~~~~a~~~lG~ 77 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT---P-EGSSLTSMAEKYLGK 77 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C-CCCCHHHHHHHHhCh
Confidence 567789999999999999999999999999999999999999999999999999987652 1 245999999999999
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330 108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL 187 (342)
Q Consensus 108 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (342)
.|+++..+...+..++.+.+|....++.+++.++.... ...+.....+++.++...+.... -+...+++.+-+...+
T Consensus 78 -~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 78 -KGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRINRVLVFGMI 154 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999876321 12222222233333333333332 2223333322222222
Q ss_pred HHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHH
Q 019330 188 GYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVI 266 (342)
Q Consensus 188 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~ 266 (342)
......+...+.+...++. ...+....++...+.++++.++|| .|+++|++.+.+++..+ |.+|++.++..+.
T Consensus 155 ~~~~~l~~~~~p~~~~~~L-----~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~-k~~~ai~~Gs~i~ 228 (394)
T PF03222_consen 155 ISFIILVVYLIPHWNPSNL-----LDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPK-KIRKAIIIGSLIP 228 (394)
T ss_pred HHHHHHHHHHhhhcCHHHh-----hccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHH-HHHHHHHHHHHHH
Confidence 2111121221221111010 001112234567889999999999 99999999999986644 5899999999999
Q ss_pred HHHHHHHhhHhhhcc-----------CCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHH
Q 019330 267 FVTFYSAAVSGYWAF-----------GNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLF 335 (342)
Q Consensus 267 ~~~y~~~g~~gy~~f-----------g~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~ 335 (342)
.++|+..-+..-..- +++. +.+...+... .++.+...+..++..+++.+||--....++|.+++
T Consensus 229 lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~-~~~~~~~~~~----~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 229 LVMYLLWVFSILGSLPREQFAEAIAQGGNV-SALVSALANV----SGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCh-HHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986533322211 1111 1111111111 12456788889999999999999999999999998
Q ss_pred HHh
Q 019330 336 QFL 338 (342)
Q Consensus 336 ~~~ 338 (342)
.+-
T Consensus 304 ~~k 306 (394)
T PF03222_consen 304 LFK 306 (394)
T ss_pred HHc
Confidence 663
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.81 E-value=1e-17 Score=157.69 Aligned_cols=288 Identities=16% Similarity=0.116 Sum_probs=200.7
Q ss_pred ChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcc
Q 019330 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (342)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (342)
++.+.+.+.+..+.+|+|+|+||.+.+..|.+++++++++++.+..|+.+++.|+..+. ++..++.+++|+.+||+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~----~~~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV----PADTGLGTLAKRYLGRY 78 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCCHHHHHHHHhChH
Confidence 46788999999999999999999999999999999999999999999999999976542 22358999999999995
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC--CCcchhHHHHHHHHHH
Q 019330 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP--TFHSLRHINLVSLLLS 186 (342)
Q Consensus 109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~~~~~ 186 (342)
|+++..+...+..+..+.+|....++.+++....+.++ ..+.....+.+.++.....+.. -.++...+-..+.+..
T Consensus 79 -g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 79 -GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998887653322 2233334444443333333332 1222222222222222
Q ss_pred HHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHH
Q 019330 187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSV 265 (342)
Q Consensus 187 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~ 265 (342)
+.. .+...+.+...+ .+...+ .+....+.+++++.+|| .|+++|++.+.+++.. +|.+|++.++..+
T Consensus 157 ~~~---~~~~l~p~~~~~-------~L~~~~-~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs~i 224 (403)
T PRK15132 157 LVV---MLALMMPHIHKV-------NLLTLP-LQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGSAI 224 (403)
T ss_pred HHH---HHHHHHHhcCHH-------HHhcCC-ccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHHHH
Confidence 211 111111111100 011000 00013788999999999 9999999999987554 4689999999999
Q ss_pred HHHHHHHHhhHhhhccCCCC----------chhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHH
Q 019330 266 IFVTFYSAAVSGYWAFGNES----------NSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLF 335 (342)
Q Consensus 266 ~~~~y~~~g~~gy~~fg~~~----------~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~ 335 (342)
..++|+..-......-+.+. -+++++.+... .+..|...++.++..+++.+||--....++|.+.+
T Consensus 225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 300 (403)
T PRK15132 225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV----VASPHVELAVHLFADLALATSFLGVALGLFDYLAD 300 (403)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999866555554443221 11233333321 12457788899999999999999999999999999
Q ss_pred HHh
Q 019330 336 QFL 338 (342)
Q Consensus 336 ~~~ 338 (342)
.+.
T Consensus 301 ~~~ 303 (403)
T PRK15132 301 LFQ 303 (403)
T ss_pred HHc
Confidence 763
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.70 E-value=7.5e-15 Score=137.95 Aligned_cols=296 Identities=11% Similarity=-0.003 Sum_probs=194.4
Q ss_pred HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHH
Q 019330 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (342)
Q Consensus 35 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v 114 (342)
...+..+.+|+|+|+||......|..++++++++...+++++...+.|...+ .+++..++.+++++.+||+ |+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~---~~~~~~~i~~v~~~~lG~~-g~~i~ 100 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLS---GSNPSGNITETVEEHFGKT-GGVVI 100 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCCCCCHHHHHHHHcChh-HHHHH
Confidence 4899999999999999999999999999999999999999999999998665 2223458999999999996 56899
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHHHHHH
Q 019330 115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPT--FHSLRHINLVSLLLSLGYSFL 192 (342)
Q Consensus 115 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~~~~~~~~~~~~~ 192 (342)
.+...+..+..+.+|...+.+.+++.+.+..+..........+++.+++.......+ +.+...+-....+.++....+
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888865543211122333333444444444444322 333333333333322222222
Q ss_pred hhhhhhccCcCCCCCCCCccc-cCc-chhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc-------c--ccchhhHHH
Q 019330 193 VVGACINAGFSKNAPPKDYSL-ESS-KSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP-------A--TGKMVKGLL 260 (342)
Q Consensus 193 ~i~~~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p-------~--~~~~~~~~~ 260 (342)
..+ -+...++..+.+.+. +.. ..........+++++++|| .|+++|+....+|+. + ++|.+|++.
T Consensus 181 ~Li---P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~ 257 (443)
T PRK13629 181 SLI---PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS 257 (443)
T ss_pred HHH---HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 221 111000000000000 000 0011235788999999999 999999998884322 3 467899999
Q ss_pred HHHHHHHHHHHHHhhHhhhccCCCC-------chhhhccCCCCCCCCCCh-----hHHHHHHHHHHHHHHhhhhhhcchh
Q 019330 261 MCYSVIFVTFYSAAVSGYWAFGNES-------NSNILKSLMPDNGPSLAP-----TSVIGLAVVFVLLQLFAIGLVSPQF 328 (342)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy~~fg~~~-------~~~il~~~~~~~~~~~~~-----~~~~~i~~~~~~i~l~~s~pl~~~p 328 (342)
.+..+..++|+..-+.....-+++. +.|++..+.+.-+..... .+...+..++..+++.+||--....
T Consensus 258 ~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LG 337 (443)
T PRK13629 258 RASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLG 337 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999977666666555432 122222222210000011 4577788888889999999999999
Q ss_pred hhhhHHHHH
Q 019330 329 HSSLQLFQF 337 (342)
Q Consensus 329 ~~~~~~~~~ 337 (342)
++|.++-..
T Consensus 338 l~E~l~gl~ 346 (443)
T PRK13629 338 TLEGLNGLI 346 (443)
T ss_pred HHHHHHHHH
Confidence 999888644
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.65 E-value=7.9e-14 Score=131.61 Aligned_cols=288 Identities=9% Similarity=-0.023 Sum_probs=195.5
Q ss_pred HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHH
Q 019330 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (342)
Q Consensus 35 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v 114 (342)
.+.+..+++|+|+|.+|....+.||+..++..++...+.+++..++.|..-..+ .+..++.|++++.|||+ +..+.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~---~p~~~i~~~~~~~fGk~-~G~ii 84 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK---NPCEDITEVVEEHFGKN-WGILI 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHcCHH-HHHHH
Confidence 688999999999999999999999998888888888888999998998854321 12348999999999995 55899
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHhhhh-cCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHh
Q 019330 115 IFIQTAINTGVGIGAILLAGECLQIMYSDL-YPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193 (342)
Q Consensus 115 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~-~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 193 (342)
.+...+..+..+.+|....++.+++..... ..+.. .+....+..++.+-.......+.+.+++.+-+...+...+..
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p--~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l 162 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPP--LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLL 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887652 22221 121222222222222333356666666666554333333333
Q ss_pred hhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHh----hhcCCcc--ccchhhHHHHHHHHH
Q 019330 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQ----ATLAPPA--TGKMVKGLLMCYSVI 266 (342)
Q Consensus 194 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~----~~m~~p~--~~~~~~~~~~~~~~~ 266 (342)
....+.+...++ ....+.....+.++..+++..++|| +|.++|+.. +|.++|+ ++|.+|+...+..+.
T Consensus 163 ~~~lip~~~~~~-----L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~ 237 (397)
T TIGR00814 163 SLYLIPHWNGAN-----LTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLIL 237 (397)
T ss_pred HHHHHHHcCHHH-----HhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 333332221111 0000111112457899999999999 999999997 3344343 557889999999999
Q ss_pred HHHHHHHhhHhhhccCCCC-c----h--hhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHH
Q 019330 267 FVTFYSAAVSGYWAFGNES-N----S--NILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQF 337 (342)
Q Consensus 267 ~~~y~~~g~~gy~~fg~~~-~----~--~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~ 337 (342)
.++|+..-+......+++. . + +.+..+.+. .+..+...+..++..+++.+||--....++|.++..+
T Consensus 238 ~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~----~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 238 VATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANH----FNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999877777666666443 1 1 122212211 1234566777888888999999999999999999866
No 16
>PRK11021 putative transporter; Provisional
Probab=99.28 E-value=1.8e-09 Score=103.24 Aligned_cols=229 Identities=13% Similarity=0.183 Sum_probs=136.0
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcch
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW 109 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 109 (342)
+.++++...+++|+|+|++.+|....+.+-..+++..++.+++.......+.|...+.|+++ ....-+++.+|+++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~~ 77 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPRL 77 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCchh
Confidence 46889999999999999999997665553235666667777777777777888776655444 34455777899977
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 019330 110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189 (342)
Q Consensus 110 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 189 (342)
| +++.............+........+..+++. ...... ...+..++.+-+...+..+...+++.+..+..+..
T Consensus 78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW----SSWQLL-LAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC----CCchHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6 66655554432222233333334444444331 111111 11111122222223334444444444333221111
Q ss_pred HHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHH
Q 019330 190 SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFV 268 (342)
Q Consensus 190 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~ 268 (342)
....+. .... +. .+....+..+.++.++..++....|+| +........+|+|+|+| +++|++..+..++.+
T Consensus 152 ~~~~~~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~ 223 (410)
T PRK11021 152 VVAIWW---AGDI--KP--ADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGL 223 (410)
T ss_pred HHHHHH---HcCC--ch--hcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHH
Confidence 111111 1111 10 111111111234557889999999999 99999999999999986 599999999999999
Q ss_pred HHHHHhhH
Q 019330 269 TFYSAAVS 276 (342)
Q Consensus 269 ~y~~~g~~ 276 (342)
+|++....
T Consensus 224 lYil~~~~ 231 (410)
T PRK11021 224 VYWACTVV 231 (410)
T ss_pred HHHHHHHH
Confidence 99987755
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.27 E-value=1.6e-09 Score=104.47 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=141.9
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
+|+=+.++.+...+++++|+|++.+|...++.|-. .+...++.++........+.|...+.|+++ ...+-+++ +
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G----G~y~y~~~-~ 77 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG----GPIAYAGE-I 77 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----ChhHHHHH-H
Confidence 55667899999999999999999999999988764 455555566666666666777766554444 23333456 7
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH-HHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
|+++| +.+.............++.+...+.+..+++... + . ...+... ..+..+-+...+..+....++.+..+
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-~-~--~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~ 152 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-D-P--IPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLV 152 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-C-h--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88766 6666654443434444554555566655554221 1 1 1111111 11111222233344444444444333
Q ss_pred HHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHH
Q 019330 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCY 263 (342)
Q Consensus 185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 263 (342)
..+...+..+.....+...++. ..++. +..+....++..++....|+| +........+|+|+|+| +++|++..+.
T Consensus 153 ~~li~~~~~~i~g~~~~~~~~~-~~~~~--~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~ 228 (435)
T PRK10435 153 LVLIPVVGTAIVGWHWFDAATY-AANWN--TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR-TVPLATMLGT 228 (435)
T ss_pred HHHHHHHHHHHHHHHHcCHHhh-ccccc--CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc-cccHHHHHHH
Confidence 2222221111111111111000 01111 111123568889999999999 99999999999999986 5999999999
Q ss_pred HHHHHHHHHHhhHhhhcc
Q 019330 264 SVIFVTFYSAAVSGYWAF 281 (342)
Q Consensus 264 ~~~~~~y~~~g~~gy~~f 281 (342)
.++.++|++..+......
T Consensus 229 ~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 229 GLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999998877654443
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=99.25 E-value=4e-09 Score=101.46 Aligned_cols=240 Identities=10% Similarity=0.082 Sum_probs=152.6
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
+|+-+.++.+...+++++|+|++.+|....+.+-..+.+..++.++........+.|...+.|+++ ...+-.++.+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~~ 77 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEAM 77 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHHh
Confidence 466688999999999999999999997765443233455555666667667777788776654433 2334466789
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCc---------hHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSL---------KLYEFIAMVTVVMIVLSQLPTFHSLR 176 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~---------~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (342)
||+.| +++.....+.....+..+....++.+..+++....+... .......+..++.+-....+..+...
T Consensus 78 G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 78 GELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 99655 777777777777777778888888887776532111000 00001112222222233334566666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330 177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM 255 (342)
Q Consensus 177 ~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~ 255 (342)
+++.+.....+...++.+.....+...+ +... ..+....++..++....++| +........+|+|+|+| +.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r-~i 228 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASN-----NYTP--FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPER-DI 228 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHH-----hcCC--CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc-cc
Confidence 7766666544433333222222222111 1111 11123346788899999999 99999999999999975 58
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhh
Q 019330 256 VKGLLMCYSVIFVTFYSAAVSGY 278 (342)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy 278 (342)
+|++..+..++.++|.+......
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998876544
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=99.24 E-value=2.5e-09 Score=103.13 Aligned_cols=239 Identities=10% Similarity=-0.011 Sum_probs=140.4
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
+|+=+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|.....|+++ ....-+++.+
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~~ 79 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYAF 79 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHHc
Confidence 4566789999999999999999999998888876 4666667777777766777777655544444 3344567889
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHH-HHHHHHhcCCCCcchhHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVT-VVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
||.+| +++.....+..............+.+..+++. .......+..... +..+-....+..+....++.+...
T Consensus 80 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 80 GKSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGA----TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99766 77777665555444444444444555554431 1111111211111 111111222334444444433333
Q ss_pred HHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHH
Q 019330 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCY 263 (342)
Q Consensus 185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 263 (342)
..+...++++.........++. ..... +.....+..+..++....|+| +-.......+|+|+|+| +++|++..+.
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~ 230 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSLY-VAAWN--PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGGT 230 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcccc-cCCcC--ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHHH
Confidence 2222221111111111111110 01111 111111246777788999999 99999999999999987 5999999999
Q ss_pred HHHHHHHHHHhhHhh
Q 019330 264 SVIFVTFYSAAVSGY 278 (342)
Q Consensus 264 ~~~~~~y~~~g~~gy 278 (342)
.++.++|++......
T Consensus 231 ~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 231 LGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998765443
No 20
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.20 E-value=2.8e-10 Score=94.53 Aligned_cols=212 Identities=16% Similarity=0.157 Sum_probs=142.3
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccc-----c-------c--c------
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-----C-------E--K------ 89 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-----~-------~--~------ 89 (342)
|..-+...+.|-++|+|.|++|.+|+.+||++++.++.+.++.++.+....+++... | + +
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 445678889999999999999999999999999999999999999998888776210 0 0 0
Q ss_pred --------------cCc------------------ccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhH
Q 019330 90 --------------AGR------------------RHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137 (342)
Q Consensus 90 --------------~~~------------------~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l 137 (342)
..+ +..+.++++...|.| .|.-+..++++++.+|....|-..+-...
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 000 013577888888988 78888899999999999999988877766
Q ss_pred HHHhhhhc-------------CC----C-C-c----hHHHHHHHHH-HHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHh
Q 019330 138 QIMYSDLY-------------PN----G-S-L----KLYEFIAMVT-VVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193 (342)
Q Consensus 138 ~~l~~~~~-------------~~----~-~-~----~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 193 (342)
-++...-. ++ + . + -.+.+++++. ++.+|+.+. ++++-+++.++..+.-.......
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 66644311 11 1 0 1 1244555554 555677777 68888999888887554443333
Q ss_pred hhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCC
Q 019330 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAP 249 (342)
Q Consensus 194 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~ 249 (342)
+...-....+ |....+++...+-++-.-++.-.|+| +|...|.....++.
T Consensus 251 ~~l~tmqaee------daa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~ 301 (319)
T KOG3832|consen 251 ISLATMQAEE------DAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT 301 (319)
T ss_pred hhhhhhhhcc------cccccCCccccccccccccchhhHHHHhhccCCCCCCCCee
Confidence 3222111211 11111122222234445568889999 99999987776653
No 21
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.18 E-value=1.2e-08 Score=101.08 Aligned_cols=249 Identities=10% Similarity=0.080 Sum_probs=153.1
Q ss_pred eeccCChHHHHHHHHHhhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVF--RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (342)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f--~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~ 101 (342)
..+|+=+.++.+..-++.++|+|+..+|... +.+|.. .++..++.++.+........|.....|++|. .+.| .
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y---~ 99 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLY---S 99 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceee---H
Confidence 3577778999999999999999999999654 346754 4555566666777777777777666555543 2344 3
Q ss_pred HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhh----cC------CCCch-HHHHHHHHHHHHHHHhcCC
Q 019330 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL----YP------NGSLK-LYEFIAMVTVVMIVLSQLP 170 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~----~~------~~~~~-~~~~~~i~~~i~~pl~~~~ 170 (342)
++.+|+.+| +++.....+.....+.......++.++.++... .. ..... ......+..++++-....+
T Consensus 100 ~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 456898555 888888777776666666666666666655321 00 00110 1111112222222233445
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCC-CCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcC
Q 019330 171 TFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP-KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLA 248 (342)
Q Consensus 171 ~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~ 248 (342)
..+..++++.+....-+...+++++.+..+...++... ......+..+..+.+++.+.....|+| +...+....+|.|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 66666666665554433333333333332221111100 000000111223457889999999999 9999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHhhHhhh
Q 019330 249 PPATGKMVKGLLMCYSVIFVTFYSAAVSGYW 279 (342)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~ 279 (342)
+|+| +++|++..++.++.++|.++.+.-..
T Consensus 259 nP~r-~iP~aii~sl~i~~vlY~lv~~~l~~ 288 (557)
T TIGR00906 259 NPQR-AIPIGIVTSLLVCFVAYFLMSAALTL 288 (557)
T ss_pred Cccc-cccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987 59999999999999999988765433
No 22
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.16 E-value=6.5e-09 Score=97.67 Aligned_cols=286 Identities=13% Similarity=0.120 Sum_probs=164.4
Q ss_pred ChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcc
Q 019330 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (342)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (342)
=|.+|....+..+++|+|++.+|....+.+--.+.+..++.+........++.+..++. + .+ +..+..++.+||.
T Consensus 3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~--p-~~--~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF--P-EK--NFSEILSKYLGKI 77 (359)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC--C-CC--CHHHHHHHHhhHH
Confidence 35689999999999999999999987654433444555666666677777777776652 2 22 7889999999996
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA-MVTVVMIVLSQLPTFHSLRHINLVSLLLSL 187 (342)
Q Consensus 109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (342)
.| .+..+....+............++.++...- ++. ..+.+ +..++..-....+.++....++.+-....+
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~t----p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRT----PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 56 5555655566555555555555555543321 221 22222 222222223344567777777776665444
Q ss_pred HH-HHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHH-HHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHH
Q 019330 188 GY-SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSIS-IIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYS 264 (342)
Q Consensus 188 ~~-~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~ 264 (342)
.. .+++......+. + + + .+.+..+.++.+...+.- ...++| +...+.-...++|+|+ |.+|+...+..
T Consensus 150 ~~~~~il~~~~~~~~---~-~-~--~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~~ 220 (359)
T TIGR00912 150 ILFILVLILLAPKLG---N-I-K--NLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAII 220 (359)
T ss_pred HHHHHHHHHHhcccc---c-H-H--HccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHHHHH
Confidence 33 122222222211 0 0 0 111111122335555443 778888 8888888888888765 47899999999
Q ss_pred HHHHHHHHHhhHhhhccCCCCch----hhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHH
Q 019330 265 VIFVTFYSAAVSGYWAFGNESNS----NILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQF 337 (342)
Q Consensus 265 ~~~~~y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~ 337 (342)
++.++|...-+.....+|.+..+ +..+....-+.+ +--+..-.+....-.+..+...-+..+.....+.+.|
T Consensus 221 ~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~-~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~ 296 (359)
T TIGR00912 221 IGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIG-DFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLF 296 (359)
T ss_pred HHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888888888855322 111111110000 0001112223333345555566666666666666543
No 23
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.15 E-value=1.1e-08 Score=99.17 Aligned_cols=241 Identities=12% Similarity=0.113 Sum_probs=145.5
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....+++++|+|++.+| .+.++.|.. +.+..++.+++.......+.|.....|.++ +..+.+++
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G----g~~~~~~~ 84 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTG----SFSTYADD 84 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 355557899999999999999999999 667777864 666777777777777777788765544333 56677889
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHH-HHHHHHhcCCCCcchhHHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVT-VVMIVLSQLPTFHSLRHINLVS 182 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~ 182 (342)
.+|+.+| +++.....+.....+.+.....+..++.+++ + .. .|..... ++..-....+..+....+....
T Consensus 85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~--~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----D--IP--LWLFSLILTIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--Cc--HHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 9999665 7777777776666666666666666665543 2 11 2221111 1112222222344444443332
Q ss_pred HHHHHHHHHH--hhh-hhhccCcCCCCCC--CCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330 183 LLLSLGYSFL--VVG-ACINAGFSKNAPP--KDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM 255 (342)
Q Consensus 183 ~~~~~~~~~~--~i~-~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~ 255 (342)
...-+...+. ++. .......+..... .+. +..+..+..+.++..++....|+| +........+|+|+|+| +.
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~i 234 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HH
Confidence 2221111111 111 0011111100000 000 000111123446889999999999 99999999999999987 58
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 256 VKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
+|++..+.....++|+.........
T Consensus 235 PrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 235 TRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 9999888888888888765544433
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.13 E-value=1.8e-08 Score=97.49 Aligned_cols=241 Identities=11% Similarity=0.012 Sum_probs=138.4
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.+|+=+.++++...+++++|+|++.+|....+.|.. .+...++.++........+.|.....|+++. .+.| +++.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG-~y~~---~~~~ 80 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGG-SYAY---ARRC 80 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHH---HHHH
Confidence 356678899999999999999999999998887643 3444444455555555666777665554442 1233 7788
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHh--cCCCCcchhHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRHINLVS 182 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~--~~~~l~~l~~~s~~~ 182 (342)
+||.+| +++.....+.......+......+....+++.. +... ... ++...+.+.+. ..+..+....+..+.
T Consensus 81 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~-~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 81 FGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL--KDPL--VLT-ITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCcH--HHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 999766 666665555444444444444444444444321 1111 111 11111222222 223344444444444
Q ss_pred HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHH
Q 019330 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLM 261 (342)
Q Consensus 183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (342)
....+...++.+.........++. ..+.+. .....+..+..++....|+| +-.......+|+|+|+| +.+|++..
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~ 230 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETY-MAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIG 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhc-cCCccc--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHH
Confidence 332222111111111111100000 011111 11112345667788999999 99999999999999987 59999999
Q ss_pred HHHHHHHHHHHHhhHhhhc
Q 019330 262 CYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 262 ~~~~~~~~y~~~g~~gy~~ 280 (342)
+..++.++|.+..+.....
T Consensus 231 s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 231 GVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999887764433
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.13 E-value=2.1e-08 Score=97.79 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=144.6
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHhhhccccccc-cCcccccHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAAD 103 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~-~~~~~~sy~~l~~~ 103 (342)
+|+=+.++++...+++++|+|++.+|....+.|-. ..++..++.++........+.|...+.|+ +| ...+-.++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence 55678899999999999999999999998765533 23444556666666666677777665544 33 23345688
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA-MVTVVMIVLSQLPTFHSLRHINLVS 182 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (342)
.+||.+| +++.+...+........+.....+.+..+++.+..+. ....+.. +..++..-....+.++....++.+.
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGN--PVPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8999766 7777766555555555665555666666655221111 1111211 1111222223334556555555554
Q ss_pred HHHHHHHHHHhhhhhhccCcCCCCCCCCccc--cCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHH
Q 019330 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSL--ESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGL 259 (342)
Q Consensus 183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~ 259 (342)
....+...+++++..+.....++. ..+... .+.....+..+..++....|+| +........+|+|+ + |+.+|++
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~-r~iPrai 235 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLF-TADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K-SDVGKAT 235 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhc-ccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c-ccchHHH
Confidence 443232222222111111100000 001000 0011123446778889999999 99999999999999 4 4699999
Q ss_pred HHHHHHHHHHHHHHhhHhhh
Q 019330 260 LMCYSVIFVTFYSAAVSGYW 279 (342)
Q Consensus 260 ~~~~~~~~~~y~~~g~~gy~ 279 (342)
..+..++.++|++.......
T Consensus 236 ~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 236 VLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987765433
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=99.09 E-value=8e-08 Score=93.26 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=142.8
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....++.++|+|++..|.... ++|- ..++..++.+++......-+.|...+.|.+| +....+++
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~~ 93 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAYK 93 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence 4566688999999999999999999986554 4465 4666777777788877888888776655444 56667889
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (342)
.+|+.+| +++.....+.............+..++.+++ + .....+.+....+.. ....+..+..+.+.....
T Consensus 94 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~~~l~~-~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 94 YWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP----D--VPTWIWAAAFFIIIN-AVNLVNVRLYGETEFWFA 165 (458)
T ss_pred HhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----c--CcHHHHHHHHHHHHH-HHHHhcchhhhhHHHHHH
Confidence 9999766 7777766665554455555555555554432 1 111112222222222 222234444444332222
Q ss_pred HH---HHHHH-HHhhhhhhccCcCCCCCCCCcccc--CcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchh
Q 019330 184 LL---SLGYS-FLVVGACINAGFSKNAPPKDYSLE--SSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMV 256 (342)
Q Consensus 184 ~~---~~~~~-~~~i~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~ 256 (342)
.. .+... ++.+.. ...+........+.... +..+..+.++..++....|+| +-.......+|+|+|+| +++
T Consensus 166 ~ikv~~i~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k-~iP 243 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWL-LFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK-SIP 243 (458)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh-HHH
Confidence 11 11111 111111 01110000000000000 001123456788999999999 99999999999999987 589
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 257 KGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
|++..+.....++|..........
T Consensus 244 rai~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 244 KAVNQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhee
Confidence 999999999999998755444333
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.09 E-value=8.5e-08 Score=93.41 Aligned_cols=245 Identities=11% Similarity=0.113 Sum_probs=138.8
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f-~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....++.++|+|++..|... +.+|-...++..++.+++.......+.|.....|++| .+..-+++
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~ 87 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR 87 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 466678899999999999999999888664 5667544455566666677777777777766655444 45566778
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (342)
.+|+.+| +++.....+.....+.......+..++.+. ++. ....+.++..++...+ ..+..+....++....
T Consensus 88 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~~--~~~~~~~~~~~~~~~i-n~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 88 YLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWF----PQV--PVWPWCLLFCALIFGL-NVVSTRFFAEGEFWFS 159 (471)
T ss_pred hcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcC--cHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 8999766 677766666555544444444443333222 221 1111222222222222 2233443333332222
Q ss_pred HHHHHHHHHhhhhh---hcc-C-cCCCCCC---CCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 184 LLSLGYSFLVVGAC---INA-G-FSKNAPP---KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 184 ~~~~~~~~~~i~~~---i~~-~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
..-+...+..++.. ... . ..++.+. .+....+..+....+++.++....|+| +-......-+|+|+|+| +
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~ 238 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAK-V 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh-H
Confidence 11111111111111 000 0 0000000 011100110112346778888899999 99999999999999987 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg 282 (342)
++|++..+..++.++|+...+......+
T Consensus 239 iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 239 IPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999999999887765444433
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.05 E-value=1.3e-07 Score=92.03 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=136.6
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+-+.++.....++.+||+|++-.|. +.+++|. ..+...++.+++......-+.|.... +.+..++.+.+++
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~----~~~~~~~~~ya~~ 92 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS----NLEYKSFSDFASD 92 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCcHHHHHHH
Confidence 5677788999999999999999999875 6777777 34555556666665555556665432 1112256678999
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (342)
.+|+..| +++.....+.......+.....+..++.+++ +. ....+.++...+..-+. .+..+....++.+..
T Consensus 93 ~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p----~~--~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 93 LLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFP----DL--SDWVASLAVVLLLLSLN-LATVKMFGEMEFWFA 164 (469)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC--cHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 9999655 8887777766544444455555555554433 21 11111122212222222 223444444443332
Q ss_pred HHHHHHHHHhhhhhh---ccCc--CCCCC--CCCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 184 LLSLGYSFLVVGACI---NAGF--SKNAP--PKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 184 ~~~~~~~~~~i~~~i---~~~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
..-+...+.+++.+. ..+. .+..+ ..+. +..+..+..+.+++.++....|+| +........+|+|+|+| +
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~ 243 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK-S 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh-H
Confidence 221111111111111 1110 00000 0000 000011123446889999999999 99999999999999986 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhh
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGY 278 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy 278 (342)
++|++..+...+.++|.+......
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHe
Confidence 899998777777888876665543
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.99 E-value=3.5e-07 Score=89.06 Aligned_cols=246 Identities=12% Similarity=0.046 Sum_probs=137.3
Q ss_pred CChHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330 28 KGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (342)
Q Consensus 28 ~~s~~~a~~~l~~~~iG~GiL~lP~~f~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (342)
+=+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|.....|+.+. ...+-+++.||
T Consensus 2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG---G~y~y~~~~fG 78 (468)
T TIGR03810 2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG---GVYSYAKAGFG 78 (468)
T ss_pred CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---ChhhhHHhHcC
Confidence 4467889999999999999999998755 4453333444566666666666677777665443221 23333888899
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH-HHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLLL 185 (342)
Q Consensus 107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (342)
+.+| +++.....+........+.....+.+..+++.+.+ ..+...+.+. ..+..+-....+..+....++.+..+.
T Consensus 79 ~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 79 PFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG--GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9665 77776665555444555655555555555443211 1111111111 111122222234555555555444432
Q ss_pred HHHHHHHhhhhhh--ccC--cCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330 186 SLGYSFLVVGACI--NAG--FSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL 260 (342)
Q Consensus 186 ~~~~~~~~i~~~i--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (342)
-+...++.++... .+. ...+.. .+.+........+..+..++....|+| +......+.+|.|+ +|+++|++.
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~--~k~ip~ai~ 232 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFW-GNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK--RSDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCcccc-ccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC--cccchHHHH
Confidence 2222111111111 111 000000 000000001112335667888999999 99888888888886 346899999
Q ss_pred HHHHHHHHHHHHHhhHhhhccC
Q 019330 261 MCYSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy~~fg 282 (342)
.+...+.++|.+..+..+...+
T Consensus 233 ~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999988876654443
No 30
>PRK10836 lysine transporter; Provisional
Probab=98.97 E-value=7.2e-07 Score=87.34 Aligned_cols=243 Identities=9% Similarity=0.109 Sum_probs=133.6
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....++++||+|++..|. +.+++|-...++..++.+++....+.-+.|...+.|++| ....-+++
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y~y~~~ 88 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFATYGQN 88 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHH
Confidence 4666788999999999999999999996 666777644677777788888888888888877665544 44555667
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH---H
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN---L 180 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s---~ 180 (342)
.+|+.+| +++.....+........-.......++.++ ++. ....+..+..++..-+. ....+....+. .
T Consensus 89 ~~g~~~g-f~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~----~~~--~~~~~~~~~~~~~~~lN-~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 89 YVEEGFG-FALGWNYWYNWAVTIAVDLVAAQLVMSWWF----PDT--PGWIWSALFLGVIFLLN-YISVRGFGEAEYWFS 160 (489)
T ss_pred HcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCC--chHHHHHHHHHHHHHHH-HHcchhhhhhHHHHH
Confidence 7888666 666655544322222211111222222221 221 11112122212222122 22233222222 1
Q ss_pred HHHHHHHHH-HH--HhhhhhhccCcCCCCCCCCccccC-cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330 181 VSLLLSLGY-SF--LVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM 255 (342)
Q Consensus 181 ~~~~~~~~~-~~--~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~ 255 (342)
+..+..+.. .+ +.......+..+... ..++...+ .....+..++.+.....|+| +...+....+|.|+|+| ++
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~i 238 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAG-WSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAK-NI 238 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCc-cccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHH-HH
Confidence 111111111 11 111111111110000 01111000 00112345566666677999 99999999999999986 59
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhhcc
Q 019330 256 VKGLLMCYSVIFVTFYSAAVSGYWAF 281 (342)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy~~f 281 (342)
+|++..++..+.++|......-....
T Consensus 239 PrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 239 PRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheec
Confidence 99999999999999998765544443
No 31
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.96 E-value=6.4e-08 Score=92.98 Aligned_cols=240 Identities=10% Similarity=0.077 Sum_probs=144.3
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccccccccCcccccHHHHHHHHhCcc
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (342)
+++++....+++++|+|+...| .....|.. .++..++.+.+. ........|..++.|+++ ....-.++.+||+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~~ 75 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGPF 75 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhccccc
Confidence 5688999999999999999999 77677765 554444444444 455556666655433333 5556678889997
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHH-HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEF-IAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL 187 (342)
Q Consensus 109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~-~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (342)
+| ++......+........+.....+.+...+....+ ......+ +.+..++..-....+..+..++++.......+
T Consensus 76 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 76 WG-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN--PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT--CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ch-hcccceeEEEeeccccccccchhhhhhhccccccc--cccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 66 77777777777777777777777776655432111 1111111 11122222222233346666666555554444
Q ss_pred -HHHHHhhhhhhccCcCCCCC---CCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330 188 -GYSFLVVGACINAGFSKNAP---PKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC 262 (342)
Q Consensus 188 -~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (342)
...++.+...+.....+..+ +......+. .+...+.+++...|+| +........+|+|+ |+.+|++..+
T Consensus 153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~ 226 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS---GWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH----SHSCSSCS---SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHH
T ss_pred hhhhhhheeEEEeeecccccccccccccccCCc---cccchhhHHHHHHhhcccccccccccccccc---hhheeecccc
Confidence 23223333333322111100 000011111 1124678899999999 99999999999876 3589999999
Q ss_pred HHHHHHHHHHHhhHhhhccCCC
Q 019330 263 YSVIFVTFYSAAVSGYWAFGNE 284 (342)
Q Consensus 263 ~~~~~~~y~~~g~~gy~~fg~~ 284 (342)
..++.++|.+....-....+++
T Consensus 227 ~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 227 IIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhHHHHHHhhhhheeeecccch
Confidence 9999999999877766665543
No 32
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.95 E-value=6.9e-07 Score=87.24 Aligned_cols=238 Identities=11% Similarity=0.045 Sum_probs=142.0
Q ss_pred cCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 27 SKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
|+=+.++.....+..++|+|++..|. +.+..|....++..++.+++.......+.|.....|+.+. .|...+++.+
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG---~~~~~~~~~~ 78 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG---SFATYASRFV 78 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHc
Confidence 34467888999999999999998774 4556664433555666667777777777887665442222 5777889999
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (342)
|+++| +++.....+.....+.......+..++.+.+ ......|..+..++ .-+...+..+....++.+....
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD------KVNPAVWIAIFYVF-IVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHH
Confidence 99777 7777777777666666666666666654322 12222232222222 2222333455544444333221
Q ss_pred HH---HHHHHhhhhhhccCcCCCCC--CCCc----cccCc-chhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 186 SL---GYSFLVVGACINAGFSKNAP--PKDY----SLESS-KSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 186 ~~---~~~~~~i~~~i~~~~~~~~~--~~~~----~~~~~-~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
-+ ...++..+.......++... ..+. .+.+. ....+.++..++....|+| +-.......+|.|+|+| +
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~ 229 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRK-S 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh-H
Confidence 11 11111111111111100000 0000 01110 0012457788899999999 99999999999999987 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhH
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVS 276 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~ 276 (342)
++|++..+..++.++|.+..+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987544
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.95 E-value=5.6e-07 Score=87.30 Aligned_cols=236 Identities=12% Similarity=0.088 Sum_probs=137.4
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.+|+=+.++.....++.+||+|++..|....+.|-...++..++.+++......-+.|.....|..+ ++.+-+++.
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~~~ 85 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAYKY 85 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHH
Confidence 4666688999999999999999998886655443234555566666666666666777765544433 455557778
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
+|+..| +++.....+.....+.+.....++.++...+ + .....+.++...+..-+.. ...+....++.....
T Consensus 86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~--~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYP----E--IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFAI 157 (456)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 999544 8888888877777777777777777765543 2 1111122222222222222 233444444433322
Q ss_pred HHHHHHHHhhhhh---hccCcCCC--CCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhH
Q 019330 185 LSLGYSFLVVGAC---INAGFSKN--APPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKG 258 (342)
Q Consensus 185 ~~~~~~~~~i~~~---i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~ 258 (342)
.-+...+++++.. ........ ......+..+..+..+..+..+++...|+| +-.......+|+|+|+| .++|+
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r-~iPrA 236 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ-SIPKA 236 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh-HHHHH
Confidence 2221111111100 01110000 000000000011122346777888899999 99999999999999987 58999
Q ss_pred HHHHHHHHHHHHHHH
Q 019330 259 LLMCYSVIFVTFYSA 273 (342)
Q Consensus 259 ~~~~~~~~~~~y~~~ 273 (342)
+..+.....+.|...
T Consensus 237 i~~~~~~i~~~y~~~ 251 (456)
T PRK10238 237 TNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777777777654
No 34
>PRK15049 L-asparagine permease; Provisional
Probab=98.95 E-value=6.3e-07 Score=87.87 Aligned_cols=244 Identities=10% Similarity=0.081 Sum_probs=136.5
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....+..+||+|++..|. +.+.+|- .+++..++.+++....+..+.|.....|..+ +...-+++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG----g~y~y~~~ 100 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG----SFVSYARE 100 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence 4555678999999999999999998887 6666675 4666777777777777777888776554443 45666788
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHH--HHHHHHHHHHhcCCCCcchhHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHINLV 181 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (342)
.+|+++| +++.....+........-....+...... +.+ + .. ..|. +...++..-+ ..+..+....+...
T Consensus 101 ~~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~-~--~~--~~~~~~~~~~~l~~~i-N~~gvk~~~~i~~~ 172 (499)
T PRK15049 101 FLGEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF-G--GV--PQWVFALAALTIVGTM-NMIGVKWFAEMEFW 172 (499)
T ss_pred HhCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-C--CC--cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8999665 77777665544333333333333333211 110 1 11 2232 1121222222 22233444343333
Q ss_pred HHHHHHHHHHHhhhh---hhccCcCCCCCCCCccc----cCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCcccc
Q 019330 182 SLLLSLGYSFLVVGA---CINAGFSKNAPPKDYSL----ESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATG 253 (342)
Q Consensus 182 ~~~~~~~~~~~~i~~---~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~ 253 (342)
..+.-+...+..++. ....+...+........ .+..+..+...+.++....|+| +-..+....+|.|+|+|
T Consensus 173 ~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r- 251 (499)
T PRK15049 173 FALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT- 251 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-
Confidence 221111111111111 11111110000000000 0111123345666777899999 99999999999999987
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330 254 KMVKGLLMCYSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 254 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 282 (342)
+++|++..+.....++|+..........+
T Consensus 252 ~iPrAi~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 252 MVPKAINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 59999999998888888876665444433
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.94 E-value=5.3e-07 Score=87.52 Aligned_cols=239 Identities=12% Similarity=0.104 Sum_probs=137.9
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....+.+++|+|++.+|.. .+.+|- .+.+..++.++........+.|...+.|.++ ...+-+++
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~~~ 81 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYAQE 81 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 35666888999999999999999999876 445564 4566677777777777777888766544333 44456788
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (342)
.+||.+| +++.+...+.....+.......+..++.+++ + .....+.+...++ .-....+..+....+..+..
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~l-~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP----T--VPHWIWVLSVVLI-ICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--CChHHHHHHHHHH-HHHHHHccchhHHHHHHHHH
Confidence 8999655 7777766655544444444444444444332 1 1112222222222 22233334454444443322
Q ss_pred HHHHHHHHHhh-------hhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330 184 LLSLGYSFLVV-------GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM 255 (342)
Q Consensus 184 ~~~~~~~~~~i-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~ 255 (342)
...+...++.+ .....+..+........+..+..+..+.++..++....|+| +........+|+|+|+| +.
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k-~i 232 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK-SI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-HH
Confidence 22111111111 11111110000000000000011123446788899999999 99999999999999987 58
Q ss_pred hhHHHHHHHHHHHHHHHHhhHh
Q 019330 256 VKGLLMCYSVIFVTFYSAAVSG 277 (342)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~g 277 (342)
+|++..+.....++|.......
T Consensus 233 PrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 233 PRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8998888877788887665443
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.94 E-value=9e-08 Score=99.67 Aligned_cols=244 Identities=16% Similarity=0.118 Sum_probs=149.8
Q ss_pred cCChHHHHHHHH-Hhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccc-ccccCcccccHHHHHHH
Q 019330 27 SKGEWWHAGFHL-TTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAAD 103 (342)
Q Consensus 27 ~~~s~~~a~~~l-~~~~iG~GiL~-lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-~~~~~~~~~sy~~l~~~ 103 (342)
++=+++++++.- +.+|+|+|+.- +++...++|...+.+..++.++++..+..-+.+.... .++.|. .| ...++
T Consensus 76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y-~yisr 151 (953)
T TIGR00930 76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AY-YLISR 151 (953)
T ss_pred cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HH-HHHHH
Confidence 344667777777 99999999865 5577779998878888888999999888888887654 333332 23 34566
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcC---CCCc-hHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP---NGSL-KLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~---~~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (342)
.+|+.+| ..+.+...+.+...+..|.+..++.+..+++.... .... ..+.+.++..+++.-+++. ..+....+.
T Consensus 152 alGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~-Gvk~~ak~q 229 (953)
T TIGR00930 152 SLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFA-GMEWENKAQ 229 (953)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 7899776 77777888888888899999999999888753210 0011 1122222222222233332 334333443
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcCCCC-CCCCc-------cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc
Q 019330 180 LVSLLLSLGYSFLVVGACINAGFSKNA-PPKDY-------SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP 250 (342)
Q Consensus 180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p 250 (342)
.+.+++.+...+.+++..+........ ....+ +..+..+.....++..++++.++| |......+-+|+|+|
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 333332222222222222211100000 00000 000000001113677888888899 999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330 251 ATGKMVKGLLMCYSVIFVTFYSAAVSG 277 (342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (342)
++ .+++++..+..+++++|+++.++.
T Consensus 310 ~r-~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 310 QK-AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 599999999999999999987643
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.92 E-value=2.7e-07 Score=89.13 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=139.1
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.+|+=+.++.....+..++|......+...+..|+..-+...++.+++.......+.|.....|.++ ....-+++.
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~~~ 80 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFARRA 80 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 4666677888888888889855566688888899864444555555555555566777766554443 344566888
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
+|+.+| +++.....+........+....++.+..+++. . ......++...+.. +...+..+....++.+..+
T Consensus 81 ~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~--~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 81 FGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPV----G--PGWLAALVFYIVFI-GINILGVGEAAKLEFVVTA 152 (442)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C--chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHH
Confidence 999655 77777777776667777777778887776542 1 11111111111111 2222234444444333332
Q ss_pred HHHHHHHHhhhhhhccCcCCCCCCCCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330 185 LSLGYSFLVVGACINAGFSKNAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC 262 (342)
Q Consensus 185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (342)
..+...++.+.....+....+.-..+. +..+..+..+.+++.++....|+| +........+|+|+|+| +.+|++..+
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~~s 231 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLIGA 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHHHH
Confidence 222211111111111100000000000 000111123346788888899999 99999999999999987 589999999
Q ss_pred HHHHHHHHHHHhh
Q 019330 263 YSVIFVTFYSAAV 275 (342)
Q Consensus 263 ~~~~~~~y~~~g~ 275 (342)
..++.++|+...+
T Consensus 232 ~~~~~~~~~~~~~ 244 (442)
T TIGR00908 232 ILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888876644
No 38
>PRK10746 putative transport protein YifK; Provisional
Probab=98.92 E-value=1.1e-06 Score=85.49 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=141.7
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=+.++.....+..+||+|++..|.. .+.+|- ..++..++.+++.......+.|.....|.++ ++.+-+++
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG----g~~~y~~~ 82 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG----SFAVYAHR 82 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 35666789999999999999999998855 455665 3555666667777777777788766544333 57777889
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH--
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV-- 181 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~-- 181 (342)
.+|+.+| +++.....+.....+.......+..++.+++ + .....+..+..++..-+.+ +..+....+...
T Consensus 83 ~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p----~--~~~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~ 154 (461)
T PRK10746 83 YMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFP----E--MAQWIPALIAVALVALANL-AAVRLYGEIEFWFA 154 (461)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----C--CchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 9999777 7777777766666666666666666655443 1 1222222222222222222 223333332211
Q ss_pred --HHHHHHHHHHHhhhhh-hccCcCCCCC-CCCccc-cCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330 182 --SLLLSLGYSFLVVGAC-INAGFSKNAP-PKDYSL-ESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM 255 (342)
Q Consensus 182 --~~~~~~~~~~~~i~~~-i~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~ 255 (342)
-+...+...++.+... ...+...+.. ..+... .+..+..+.++..++....|+| +...+....+|.|+|+| .+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k-~i 233 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQV-TL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh-HH
Confidence 1111111111111100 0101000000 011100 0011123557889999999999 99999999999999986 58
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhhcc
Q 019330 256 VKGLLMCYSVIFVTFYSAAVSGYWAF 281 (342)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy~~f 281 (342)
+|++..+.....++|....+......
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 99998888888888887654443333
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.90 E-value=4.1e-07 Score=89.36 Aligned_cols=249 Identities=10% Similarity=0.084 Sum_probs=135.6
Q ss_pred eeccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhH-HHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGL-GFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (342)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~-g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~ 101 (342)
..+|+=+.++.....+++++|+|++..|.. .+++|-.. ..+..++.+++.......+.|.....|++|. ...-.
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG----~y~~~ 114 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYI 114 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----hhhhH
Confidence 356667889999999999999999999875 45566432 2233345556666666777777665554442 33335
Q ss_pred HHHhCcchHHHHHHHHHHH-HHHhhHHHHHHhhhhhH-HHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330 102 ADVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECL-QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l-~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (342)
++.+|+.+| ++....... ...+.+..+....++.+ +.+++.... ..+... .+.+..++..-....+..+...+++
T Consensus 115 ~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~-~~~~~~-~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 115 LEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV-PEWAIR-LVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred HhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-chHHHH-HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 567899666 555443322 22233334444444443 222221100 011111 1111112222222233455555555
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcCCCCCCCCcc-ccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhh
Q 019330 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVK 257 (342)
Q Consensus 180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~ 257 (342)
.+.....+...++.++.++......+....+.+ ..+.......++..++....|+| +-.......+|+|+|+| +.+|
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r-~iPr 270 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR-TLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh-hhHH
Confidence 444433332222222222111100010000100 11111123457788899999999 99999999999999986 5999
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhc
Q 019330 258 GLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 258 ~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
++..+..++.++|++..+.....
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~~~~ 293 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAYFTV 293 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999986554433
No 40
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.90 E-value=4.2e-07 Score=87.90 Aligned_cols=241 Identities=13% Similarity=0.116 Sum_probs=135.8
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f-~~~G~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~ 102 (342)
.+|+-+.++.....++.++|+|++..|... +..|-. ..++..++.+++.........|.....|+++. ...| .+
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---~~ 81 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---LK 81 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---HH
Confidence 467778899999999999999999999864 445643 24444555666666666667777665555543 2355 44
Q ss_pred HHhCcchHHHHHHHHHH-HHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330 103 DVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (342)
Q Consensus 103 ~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (342)
+.+|+.+| +++..... .........+....++.+....+ .... ......+..++.+-....+..+....++.+
T Consensus 82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~----~~~~-~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP----IDPL-LGKFIAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67888665 55655433 22223334445555555543322 1111 111111111222222233445544454444
Q ss_pred HHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330 182 SLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL 260 (342)
Q Consensus 182 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (342)
.....+...++++...+.....++.. ............+..+..++....|+| +-.......+|+|+|+| +++|++.
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~ 233 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFA-APTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK-TMPRALI 233 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccc-CCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc-cchHHHH
Confidence 44332222211221111101011100 000000011112446778889999999 99999999999999986 5899999
Q ss_pred HHHHHHHHHHHHHhhHh
Q 019330 261 MCYSVIFVTFYSAAVSG 277 (342)
Q Consensus 261 ~~~~~~~~~y~~~g~~g 277 (342)
.+..++.++|.+.....
T Consensus 234 ~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 234 GSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876543
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.88 E-value=1.7e-06 Score=83.78 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=130.6
Q ss_pred HhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHHHHH
Q 019330 39 TTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI 117 (342)
Q Consensus 39 ~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~ 117 (342)
++++||+|++-.|. +.+++|. .+++..++.+++.......+.|.....|++| ...+-+++.+|+.+| +++...
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~g-f~~gw~ 77 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAG-YTIGWL 77 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHH-HHHHHH
Confidence 56899999999997 6778886 4777777778888888888888766544433 566667789999766 777766
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 019330 118 QTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197 (342)
Q Consensus 118 ~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~ 197 (342)
..+.....+.......+..++...+ ......+.++..++.. +...+..+....+..+....-+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWVP------GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc------cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6655555444444444444433321 1111112122211222 22222344444443333322121111111111
Q ss_pred h--ccCcCCCCCCCCc-ccc---CcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHH
Q 019330 198 I--NAGFSKNAPPKDY-SLE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTF 270 (342)
Q Consensus 198 i--~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y 270 (342)
+ ..+.....+.... +.+ +..+..+.++..++....|+| +-..+....+|+|+|+| +++|++..+.....++|
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFY 229 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHH
Confidence 1 1111000000000 000 011223457889999999999 99999999999999986 58999999999899999
Q ss_pred HHHhhHh
Q 019330 271 YSAAVSG 277 (342)
Q Consensus 271 ~~~g~~g 277 (342)
+...+..
T Consensus 230 il~~~~~ 236 (446)
T PRK10197 230 LCSIFVV 236 (446)
T ss_pred HHHHHHH
Confidence 8766553
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.87 E-value=7.2e-07 Score=82.48 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=145.6
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFRGL---GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~---G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (342)
|..|....+..+++|+|++.+|....+. ||+. .++-.+.+.+.. ++..+..++ . ++.+..|..++.+|
T Consensus 3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~~~~~l~~~---~l~~~l~~~---~--p~~~l~~~~~~~~G 73 (320)
T PF03845_consen 3 SPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLGGLIGLLLA---LLIYYLLKR---F--PGKTLVEISEKLFG 73 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHH---HHHHHHHHH---C--CCCCHHHHHHHHhC
Confidence 5689999999999999999999987665 5763 333333333333 333444333 1 12389999999999
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH-HHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLLL 185 (342)
Q Consensus 107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (342)
|..| .++.+...+..+......+...++.++...- | +...|.+. ..++..--...+.++.+.+.+.+-...
T Consensus 74 k~lg-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---p----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 74 KWLG-KIINLLYILYFLLISALVLREFSEFIKTYLL---P----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9666 5566666666676666667667776666432 1 22333322 223333344556788888866666654
Q ss_pred HHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHH
Q 019330 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYS 264 (342)
Q Consensus 186 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~ 264 (342)
.+...+.+......+... . .+.+..+.++.+.+.+.-...+.| +...+.-+...+|+|++ .+|....+..
T Consensus 146 ~~i~~~~i~~~~~~~~~~-----~--~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~--~~k~~~~~~~ 216 (320)
T PF03845_consen 146 FLILLLLILLLSIPNIDW-----D--NLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK--LKKSLLIAIL 216 (320)
T ss_pred HHHHHHHHHHHhcccCCH-----H--HeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH--HHHHHHHHHH
Confidence 444443343333332211 0 111112234457888877777778 77777778888887754 6789999999
Q ss_pred HHHHHHHHHhhHhhhccCCC
Q 019330 265 VIFVTFYSAAVSGYWAFGNE 284 (342)
Q Consensus 265 ~~~~~y~~~g~~gy~~fg~~ 284 (342)
.+.++|...-+.....||.+
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 99999988888888888865
No 43
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.83 E-value=1.3e-07 Score=89.63 Aligned_cols=245 Identities=12% Similarity=0.148 Sum_probs=149.7
Q ss_pred eeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhC-hh-HHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG-WG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (342)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G-~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~ 101 (342)
..+|+=+.+.++..++++++|+|+..-|....+.+ -+ .+.++-++.++++.......+|.-...+.+|. +|.=+.
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi~ 85 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYIS 85 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhHH
Confidence 34677788999999999999999999998766544 44 46666777888999888888887665554554 344443
Q ss_pred HHHhCcchHHHHHHHHHHHHHH-hhHHHHHHhhhhh-HHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330 102 ADVLGSGWMFYFVIFIQTAINT-GVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~~~~-g~~~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (342)
++||+-++ ......-.+... ..+..+-+..+++ +++.++ .+ ......--++.++++..+.++ |....++.+
T Consensus 86 -~afg~~~a-F~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c---~~p~~~~~lla~~~l~~lt~~-n~~~V~~a~ 158 (479)
T KOG1287|consen 86 -EAFGPFPA-FLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC---DVPRVASKLLAAALLVLLTLI-NSFSVKWAT 158 (479)
T ss_pred -HHhccchh-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC---CCchHHHHHHHHHHHHHHHHH-hhhhhhHHH
Confidence 45788555 322222222222 2225555555555 555554 12 111111113333344444444 566666666
Q ss_pred HHHHHHHH---HHHHHhhhhhhccCcCCCCCCCCcc-ccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 180 LVSLLLSL---GYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 180 ~~~~~~~~---~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
.+-.+++. ..+.++++.+++........+.+-+ ..+ ++.+..++..++-.-.|+| +-.++=.+.+|+|+|+| +
T Consensus 159 ~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g-~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k-t 236 (479)
T KOG1287|consen 159 RVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEG-SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR-T 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheeEeccccccccccccc-CcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc-c
Confidence 66555433 2333333333332211111111111 222 2234456788888999999 99999999999999987 6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
+++++.+++.+++++|+++=+..+.+
T Consensus 237 LP~Ai~isi~lvt~iYil~NvAy~~v 262 (479)
T KOG1287|consen 237 LPRAILISIPLVTVIYVLVNVAYFTV 262 (479)
T ss_pred chHHHHHhhHHHHHHHHHhHhheeEe
Confidence 99999999999999999887654443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.72 E-value=8.1e-06 Score=79.19 Aligned_cols=248 Identities=12% Similarity=0.123 Sum_probs=148.7
Q ss_pred ccCChHHH-HHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 26 ESKGEWWH-AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 26 ~~~~s~~~-a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
+++-+.++ ........++|.|++.+|......+ ....+..++.+++.......+.|...+.|+.| .+.+-.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y~~~~~~ 85 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAYAYAKRA 85 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Ceeeehhhh
Confidence 34444455 8888999999999999999988776 22222234444444444555566555433344 355557888
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHH--HHHHHHhcCCCCcchhHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVT--VVMIVLSQLPTFHSLRHINLVS 182 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s~~~ 182 (342)
+|+++| +++.....+................+..+++... ........+..+.. ...+-+.-.+..+....+..+.
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998766 7888888888888888888888887776665310 00000011222222 2222222333455555554444
Q ss_pred HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHH
Q 019330 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLM 261 (342)
Q Consensus 183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (342)
.+..+...++..+........+.. ...............+..++....++| |-.......+|+|+|++ +++|++..
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~aii~ 240 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNG--NLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAIIL 240 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccc--ccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHHHH
Confidence 443333333222222222211110 011100001112336888899999999 99999999999999876 48999999
Q ss_pred HHHHHHHHHHHHhhHhhhccCC
Q 019330 262 CYSVIFVTFYSAAVSGYWAFGN 283 (342)
Q Consensus 262 ~~~~~~~~y~~~g~~gy~~fg~ 283 (342)
++.++.++|...........++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 241 SLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999998877777665
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.63 E-value=2.4e-05 Score=76.33 Aligned_cols=249 Identities=13% Similarity=0.036 Sum_probs=133.3
Q ss_pred eccCChHHHHHHHHHhhh-hhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAI-VGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~-iG~GiL~lP~~f~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~ 102 (342)
.+|+=+.++.+..-++.+ +|+|+.+.|..-. ..|- ..+...++.++........+.|.....|.+| ....-++
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG----G~Y~~~~ 85 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG----AIYQWSR 85 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----CHHHHHH
Confidence 566677788877777764 8899888886654 4444 4555556666666666777777766655444 2334466
Q ss_pred HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhh---hcCCCCc----h-HHHHHHH-HHHHHHHHhcCCCCc
Q 019330 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD---LYPNGSL----K-LYEFIAM-VTVVMIVLSQLPTFH 173 (342)
Q Consensus 103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~---~~~~~~~----~-~~~~~~i-~~~i~~pl~~~~~l~ 173 (342)
+.+|+.+| +++.....+................+..++.. ...+..+ . ...+.+. ..++..-+...+..+
T Consensus 86 ~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77899766 77776666555444444344444444433221 1101111 0 1112111 111222222233455
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCc--cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc
Q 019330 174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY--SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP 250 (342)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p 250 (342)
....+..+..+..+...+++++....... +++.... ...+..+.....+..+.....|+| +-.....+-+|+|+|
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQ--RGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 55555554443322222222222121111 1100000 000111111234556666778999 999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330 251 ATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 282 (342)
+| ..+|++..+..+..++|.+.-+......+
T Consensus 243 ~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 243 RR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 87 58999999999887766655554444433
No 46
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.37 E-value=0.00015 Score=68.37 Aligned_cols=245 Identities=14% Similarity=0.174 Sum_probs=150.9
Q ss_pred ccCChHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL-~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
+|.=+.++--+.-+...||+|.. .--.+.+.+|-- -++.-++.+++.+.-++.|.|-..+.| ... |+.+.+++.
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p--~~g--SF~~~a~~~ 86 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP--VSG--SFSDYARKY 86 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC--CCC--cHHHHHHHH
Confidence 45557788889999999999953 344556666643 344455677777777888888766532 233 999999999
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHH--HHHHHHH--HHHhcCCCCcchhHH-H
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVM--IVLSQLPTFHSLRHI-N 179 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--~i~~~i~--~pl~~~~~l~~l~~~-s 179 (342)
+|+..| ++......+.-..++++-+..++..++..++. . ..|+ +...+++ .=+.-.|.+.++.+. +
T Consensus 87 lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~------v--P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 87 LGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD------V--PQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999544 89999999999999999999999999998873 1 3343 2222222 223344555555443 3
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcCCCCCCCCcc-cc---CcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
.+=++.++...++.++ -+..+.+.+......+ ++ +.-+..+.+++.++-+.+||| +.-.+---..|-|+|++.
T Consensus 158 lIKV~aIi~~Iv~G~~-ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~- 235 (462)
T COG1113 158 LIKVAAIIAFIVVGIV-LLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKA- 235 (462)
T ss_pred HHHHHHHHHHHHHHHH-HHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhH-
Confidence 3322222222211111 1111221111001111 11 112345678999999999999 999888889999999873
Q ss_pred hhhHHHHH-----HHHHHHHHHHHhhHhhhccCCCCc
Q 019330 255 MVKGLLMC-----YSVIFVTFYSAAVSGYWAFGNESN 286 (342)
Q Consensus 255 ~~~~~~~~-----~~~~~~~y~~~g~~gy~~fg~~~~ 286 (342)
++|++..- .+=+..+.+++.+.-+-.++++.+
T Consensus 236 ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S 272 (462)
T COG1113 236 IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS 272 (462)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC
Confidence 66665433 333344445566666655555443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.25 E-value=0.00031 Score=68.73 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=125.3
Q ss_pred eccCChHHHHHHHHHhhhhh--hhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVG--PTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG--~GiL-~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~ 101 (342)
.+|+=+.++.+..-+. ++| +|+. +++.+.++.|-...+...++.+++.......+.|.....|++| +...-+
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G----g~y~~~ 84 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG----GQYFWS 84 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----cHHHHH
Confidence 4555566666555555 444 4543 3445666777755566666777777777777788766655444 334445
Q ss_pred HHHhCcchHH---HHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCC--CchHHHHHHHHH--HHHHHHhcCCCCcc
Q 019330 102 ADVLGSGWMF---YFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG--SLKLYEFIAMVT--VVMIVLSQLPTFHS 174 (342)
Q Consensus 102 ~~~~G~~~g~---~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~--~~~~~~~~~i~~--~i~~pl~~~~~l~~ 174 (342)
++.+|+++|+ +++.....+.....+.+.....++.+..+.....+++ ........++.. +..+-+...+..|.
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 6667654432 5556666666666666666666666665543222221 011111111111 11122222223344
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccc---cCcc---hhhHhhHHHHHHHHHHHH-hhccHHHHhhhc
Q 019330 175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSL---ESSK---SARIFSAFTSISIIAAIF-GNGILPEIQATL 247 (342)
Q Consensus 175 l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m 247 (342)
+..+..+..+..+...+++++........+.. ..+... .+.. ...-+....++....|+| +-.......+|+
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACKSPKFN-DGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-ChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 44444333322222111111111111100000 001000 0000 001124556666678999 999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330 248 APPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 282 (342)
|+|+| +++|++..+..+..+++++..+.-+...+
T Consensus 244 knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 244 ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99986 58999999888776655444433333333
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.24 E-value=0.00049 Score=67.62 Aligned_cols=239 Identities=9% Similarity=0.099 Sum_probs=121.1
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccccccc-cCcccccHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEK-AGRRHIRFRELAAD 103 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~~~~~-~~~~~~sy~~l~~~ 103 (342)
+++=+.++.....+++++|.+ .+|.++++.|.. +++..++.+++. .-....+.|.....|. +| .-..-.++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~~ 78 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMNK 78 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHH
Confidence 455688888888899999976 679888888875 555555555443 3344456776554442 23 23344677
Q ss_pred HhCcchHHHHHHHHHHHHHHhhH---H-------HHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHH--HHHHHhcCCC
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVG---I-------GAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV--VMIVLSQLPT 171 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~---~-------~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~--i~~pl~~~~~ 171 (342)
.+|+++|. ++............ . .+.+. +....+.++. .+.... ....++..+ ..+-....|.
T Consensus 79 ~~G~~~gf-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~-~~~~~~a~~~~~~~t~vn~~g 153 (496)
T PRK15238 79 SVGPKFAF-IGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHF--LGLNST-QVVGILAVIWMILVTFVASKG 153 (496)
T ss_pred HcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhh--hcccch-HHHHHHHHHHHHHHHHHHccc
Confidence 78998874 33222211111111 0 11111 1111110000 000111 111111111 2233334556
Q ss_pred CcchhHHHHHHHHHHHHH----HHHhhhhhhccC-cCCCCCC-CCccccCcch-hhHhhHHHHHHHHHHHH-hhccHHHH
Q 019330 172 FHSLRHINLVSLLLSLGY----SFLVVGACINAG-FSKNAPP-KDYSLESSKS-ARIFSAFTSISIIAAIF-GNGILPEI 243 (342)
Q Consensus 172 l~~l~~~s~~~~~~~~~~----~~~~i~~~i~~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~i~~fsf-~~~~~~~i 243 (342)
++..+.++.++....+.. .++........+ ..+++.. .+......+. .+......++....|+| +.......
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 233 (496)
T PRK15238 154 INKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGL 233 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666665433322211 111111111111 1000000 0100000010 01135677788889999 99999999
Q ss_pred hhhcCCccccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330 244 QATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSG 277 (342)
Q Consensus 244 ~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (342)
.+|+|+|+| +++|++..+...+.++|.+..++.
T Consensus 234 a~E~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 234 VDKTENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHhccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 589999999999999998765444
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.22 E-value=1.3e-05 Score=78.26 Aligned_cols=239 Identities=13% Similarity=0.118 Sum_probs=136.4
Q ss_pred Hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHHHHH
Q 019330 39 TTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI 117 (342)
Q Consensus 39 ~~~~iG~GiL-~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~ 117 (342)
+..++|+|++ ..+.+..+.|.....+..++.++....+..-+.|..++.++.+ ++.+.+++.+|+++| ..+.+.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G----g~y~y~~~~lg~~~G-f~~gw~ 81 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG----GFYAYASRGLGPALG-FAAGWA 81 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc----chhhhhhhccCCcCC-ceeeHH
Confidence 4567777754 4566888888876777778888888888888888777654333 566777888999776 555555
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHH--hhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhh
Q 019330 118 QTAINTGVGIGAILLAGECLQIM--YSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG 195 (342)
Q Consensus 118 ~~~~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~ 195 (342)
..+.............+..++.. .......+.+.. .+..++.+++.-+.+. ..+....+...-...-+...+..++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI-LIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccc-hhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhHhhhhhh
Confidence 55555555555555555555444 221110111100 1122333333333333 2333333222211111111111111
Q ss_pred hh-hccCcCCCCCCC-----Ccc----ccC----cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330 196 AC-INAGFSKNAPPK-----DYS----LES----SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL 260 (342)
Q Consensus 196 ~~-i~~~~~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (342)
.. +......++... +.. +++ .+..++.+++.++....++| +.......-+|.|+|+| +++|++.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k-~IPra~~ 238 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK-TIPRATL 238 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh-hhhhHhh
Confidence 11 110100010000 111 111 11233668999999999999 99999999999999987 5999999
Q ss_pred HHHHHHHHHHHHHhhHhhhccCCCC
Q 019330 261 MCYSVIFVTFYSAAVSGYWAFGNES 285 (342)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (342)
.+.....++|.......-...+.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999988876666665443
No 50
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.20 E-value=0.0014 Score=63.46 Aligned_cols=185 Identities=11% Similarity=0.142 Sum_probs=109.7
Q ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCC-----ch--HHHHHHHHHHHHHHHh
Q 019330 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGS-----LK--LYEFIAMVTVVMIVLS 167 (342)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~-----~~--~~~~~~i~~~i~~pl~ 167 (342)
.++..+.|..||. .|..+..++..+...|=...-....++.++.+++...++.. .+ .....+++..+.+++.
T Consensus 76 l~~~v~sR~~FG~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 4788999999999 58899999999999999999999999999888776443210 11 1222344456666655
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHhhhhhhc-cCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHh
Q 019330 168 QLPTFHSLRHINLVSLLLSLGYSFLVVGACIN-AGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQ 244 (342)
Q Consensus 168 ~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~ 244 (342)
...-.+-.+.....+.........+.+..... .+..+.. +......+....+.+..+++..+-.+ .-.+.++..
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dys 231 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLG---ELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFT 231 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc---cCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhh
Confidence 55444444445555554322222222111111 1111000 00000011223456777777755555 668999999
Q ss_pred hhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc----cCCCC
Q 019330 245 ATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA----FGNES 285 (342)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~----fg~~~ 285 (342)
+.+|+|++. .+....++....+....+|..+-.. +|+..
T Consensus 232 Ry~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 232 RFGKSKKTA--IWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhcCCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999987764 3446666767777777777666655 77553
No 51
>PRK11375 allantoin permease; Provisional
Probab=98.14 E-value=0.0068 Score=59.29 Aligned_cols=295 Identities=11% Similarity=0.005 Sum_probs=146.4
Q ss_pred cccccccceeccCChHH-------HHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 019330 16 DSDAGAAFVLESKGEWW-------HAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCE 88 (342)
Q Consensus 16 ~~~~~~~~~~~~~~s~~-------~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~ 88 (342)
++|...++..+|+.+++ ...+++.+..++.|.++ ...++..++...++-..+...-+.+....-.
T Consensus 14 n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-----~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~--- 85 (484)
T PRK11375 14 SEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-----LGLSTFSIMLAIILSAFFIAAVMVLNGAAGS--- 85 (484)
T ss_pred CCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 56666666677766644 33334444334444442 2344454555544443333332333333211
Q ss_pred ccCcccccHHHHHHHHhCcchHHHHHHHHHH-HHHHhhHHHHHHhhhhhHHHHhhhhcC------CC----CchHHHHH-
Q 019330 89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYP------NG----SLKLYEFI- 156 (342)
Q Consensus 89 ~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~------~~----~~~~~~~~- 156 (342)
+...++.-+.|..||.+ |..+..+... +..+|=-..-....++.++.+.....+ ++ ......++
T Consensus 86 ---~~Gl~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~ 161 (484)
T PRK11375 86 ---KYGVPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLIT 161 (484)
T ss_pred ---ccCCChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHH
Confidence 23458999999999994 8777777774 466666666667777777766544321 11 12222232
Q ss_pred -HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccC--cchhhHhhHHHHHHHHHH
Q 019330 157 -AMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLES--SKSARIFSAFTSISIIAA 233 (342)
Q Consensus 157 -~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~f 233 (342)
+++.++..++.+. ..+.++++..++........+.+.+..+... ... +..+....+ ......+.+..++...+-
T Consensus 162 ~~i~~~l~~~~~~~-g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~i~~vig 238 (484)
T PRK11375 162 FLIFWLVNVGIGFG-GGKVLNKFTAILNPCIYIVFGGMAIWAISLV-GIG-PIFDYIPSGIQKAENSGFLFLVVINAVVA 238 (484)
T ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-hhhccCcccccCCcchHHHHHHHHHHHHH
Confidence 3445677777664 4666777666666544333322222222222 000 000110000 011123456666655555
Q ss_pred HH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHh----hhccCCCC--chhhhccCCCCCCCCCChhH
Q 019330 234 IF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSG----YWAFGNES--NSNILKSLMPDNGPSLAPTS 305 (342)
Q Consensus 234 sf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fg~~~--~~~il~~~~~~~~~~~~~~~ 305 (342)
++ ...+.|...+..|++++. .+...+++.+...+...+|+.. ...||+.. +.+++..+.+ .+
T Consensus 239 ~~~~~~~~~~D~tRy~k~~~~~--~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~--------~~ 308 (484)
T PRK11375 239 VWAAPAVSASDFTQNAHSFRAQ--ALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS--------LF 308 (484)
T ss_pred HHHHHHccccchhcccCChhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc--------hH
Confidence 56 455888988888877653 3445556655555554444332 34566544 2344443321 12
Q ss_pred HHHHHHHHHHHHHhhhh-hhcchhhhhhHHH
Q 019330 306 VIGLAVVFVLLQLFAIG-LVSPQFHSSLQLF 335 (342)
Q Consensus 306 ~~~i~~~~~~i~l~~s~-pl~~~p~~~~~~~ 335 (342)
...++.+..+++.+..- ..+.+|.-..+.+
T Consensus 309 ~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~ 339 (484)
T PRK11375 309 ASFFAVLVILMTTISTNATGNIIPAGYQIAA 339 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 33334444455555442 2355554444443
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.11 E-value=0.00093 Score=60.38 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHhhhhhhhhchHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcch
Q 019330 33 HAGFHLTTAIVGPTILTLP---YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW 109 (342)
Q Consensus 33 ~a~~~l~~~~iG~GiL~lP---~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 109 (342)
+-.+-.+.+++|+|-=+== .-|..-|+. |+...++++.+-..++..+.+..++ -+.+ +|.|+-+.++|+++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~---f~a~--~y~~~~~~v~~~~~ 80 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKK---FNAT--SYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH---hccc--chHHHHHHHhhHHH
Confidence 3455666789999854422 224456666 5555566666666666666666554 3334 89999999999977
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHH--HHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 110 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
+ .+.|+.+.++.++.++.-+-..++.+++.++. .+|. ++..+++.-+-++++.+.+-.+..+-+-
T Consensus 81 ~-ki~d~~iif~lf~~~vVM~AGags~~~e~~~l---------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 81 A-KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL---------PYWIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred H-HHHHHHHHHHHHHHHHHHhccchhHHHHHhCc---------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 6 68899999999999999999999999888753 3343 3444555555667767776655444333
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.05 E-value=0.0027 Score=62.50 Aligned_cols=51 Identities=6% Similarity=0.047 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 019330 224 AFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAV 275 (342)
Q Consensus 224 ~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~ 275 (342)
....+..+.|+| |-.......+|+|+|+| .++|++..+..++.++|.+..+
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPGR-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 344455568899 99999999999999986 5899999999988888876544
No 54
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.02 E-value=0.0057 Score=58.06 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchH
Q 019330 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (342)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (342)
|....+++.+-..|..... .++..+++..++...+...-..+....-. +...++.-+.|..||+ .|
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~------~~Gl~~~v~sR~~FG~-~G 72 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA------DTGLSAMGSLKLSLGS-KG 72 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcCHHHHHHHHHcc-ch
Confidence 5566667766676654211 44544544444433333322222222211 2234799999999999 58
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 019330 111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYS 190 (342)
Q Consensus 111 ~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 190 (342)
..+..+...+...|=-..-....++.++.+.+...+.. ....+.++..++..+.+.. ..+.++++..++........
T Consensus 73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~~ 149 (386)
T TIGR02358 73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE--SPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIAT 149 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888888999999999876432221 1233445555566666655 36777777777766544444
Q ss_pred HHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHH
Q 019330 191 FLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFV 268 (342)
Q Consensus 191 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~ 268 (342)
+...+....+..... ... +..+ .++..+++...-.+ .....++..+..|+|++ ..+...++..+...
T Consensus 150 ~~~~~~~~~~~~~~~----~~~--~~~~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~--~~~~~~~G~~i~~~ 218 (386)
T TIGR02358 150 LWLLVVVFSKADLSE----LWN--RAGD---MSFAVAVELVIAMPLSWLPLIADYTRFARNPRH--VFLGTVLGYFIGSC 218 (386)
T ss_pred HHHHHHHHhccchhh----hcC--CCCC---ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcc--eehHHHHHHHHHHH
Confidence 333332222221000 001 1111 23344444433222 33447777777766543 45667777888888
Q ss_pred HHHHHhhHhhhccCCC
Q 019330 269 TFYSAAVSGYWAFGNE 284 (342)
Q Consensus 269 ~y~~~g~~gy~~fg~~ 284 (342)
+...+|...-.+.++.
T Consensus 219 ~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 219 WMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888888777666654
No 55
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00012 Score=71.93 Aligned_cols=248 Identities=9% Similarity=0.028 Sum_probs=151.3
Q ss_pred eeccCChHHHHHHHHHhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccccccc-CcccccHHHHH
Q 019330 24 VLESKGEWWHAGFHLTTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA-GRRHIRFRELA 101 (342)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~-lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~-~~~~~sy~~l~ 101 (342)
..+|+-+.+.-.+.-+..++|+|+.= ...+.++.|-..-++..++.+.....+..-+.|..-+.|.+ + ++..-+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceeee
Confidence 45777788888888899999999864 45667777777666677777777788888888876665543 2 233334
Q ss_pred HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHh-hh-hcCC-CCchHHHH--HHHHHHHHHHHhcCCCCcchh
Q 019330 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY-SD-LYPN-GSLKLYEF--IAMVTVVMIVLSQLPTFHSLR 176 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~-~~-~~~~-~~~~~~~~--~~i~~~i~~pl~~~~~l~~l~ 176 (342)
....|+-|| +.+..-..+.....+.+-....+.+++.+. .. .... ...+...| .++..++++-+.-.+-..+.+
T Consensus 103 ~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 103 YRFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred eeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 455666566 788888888888888888888888888875 00 0000 01111111 122223333334444433344
Q ss_pred HHHHHHHHHHHH-HHHHhhhhhhccCcCCCCCCCCccccC----cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc
Q 019330 177 HINLVSLLLSLG-YSFLVVGACINAGFSKNAPPKDYSLES----SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP 250 (342)
Q Consensus 177 ~~s~~~~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p 250 (342)
.......+++.. +.++.++...--...+.......+.++ ..+..+.++++++.+..|+| +.-.+-...+|-|+|
T Consensus 182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP 261 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP 261 (554)
T ss_pred ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence 443333332221 111111111111111100000001111 11233668899999999999 999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330 251 ATGKMVKGLLMCYSVIFVTFYSAAVSG 277 (342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (342)
+| .+++++..++..+.++|...++.-
T Consensus 262 ~k-~IP~ai~~s~~ri~~~Yi~~~~~l 287 (554)
T KOG1286|consen 262 RK-AIPKAIKQSLLRILLFYILSSIVL 287 (554)
T ss_pred cc-cccHHHHHHHHHHHHHHHHHHHHh
Confidence 96 599999999999999999877653
No 56
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.90 E-value=0.0014 Score=63.23 Aligned_cols=236 Identities=11% Similarity=0.136 Sum_probs=157.9
Q ss_pred eccCChHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTI-LTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
.+|+=....-.+.-+...||+|. ++.-.+.+++|-...++.-++.+...+..+.-|.|..-..|..+ +|...+.+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG----sF~~ya~r 117 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG----SFSTYATR 117 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhhhhh
Confidence 44555677888999999999996 47789999999999999999999999999999999877655333 58888888
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcC--CCCcchhHH-HH
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHI-NL 180 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~-s~ 180 (342)
..++.+| ..+...-.+...-++..-++..+..++...+. ..+...|+.++.++++-+.+. |-..+.-+. |.
T Consensus 118 fvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~-----~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 118 FVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD-----TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred hcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC-----CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 8888777 67777777777777777777777777777542 245566777766666555543 555555444 44
Q ss_pred HHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCc---chhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchh
Q 019330 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESS---KSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMV 256 (342)
Q Consensus 181 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~ 256 (342)
+=++.++.+.++.++..+- +.+++++ -..++++. -...+.++...+-+..||| +.-.+---..|-++|+| .++
T Consensus 192 iKV~~ii~Fii~gii~~~G-g~~~~~~-ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K-~iP 268 (541)
T COG0833 192 IKVLTIIGFIILGIIIICG-GGPTHGY-IGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK-SIP 268 (541)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCCCC-cceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh-hhH
Confidence 4444333333322221111 1111110 01111111 1223567888888899999 88888777889999987 478
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019330 257 KGLLMCYSVIFVTFYSA 273 (342)
Q Consensus 257 ~~~~~~~~~~~~~y~~~ 273 (342)
|++.-...=..++|+..
T Consensus 269 kAik~vfwRIl~FYi~s 285 (541)
T COG0833 269 KAIKQVFWRILLFYILS 285 (541)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777666666666643
No 57
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.89 E-value=0.0015 Score=63.76 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=43.4
Q ss_pred HHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330 230 IIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 230 i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 282 (342)
.+.++| |-.......+|+|+|+| +++|++..+..++.++|.+..+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899 99999999999999987 59999999999999999877665444444
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.65 E-value=0.068 Score=52.38 Aligned_cols=158 Identities=6% Similarity=0.038 Sum_probs=97.0
Q ss_pred cccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHH--HHHHHHHHH-HHHHHhhhccccccccCcccc
Q 019330 20 GAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTC--LTVMGFVTF-YSYYLMSKVLDHCEKAGRRHI 95 (342)
Q Consensus 20 ~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~--l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~ 95 (342)
++...-.|+-+++...+.+..+.+|+ ..++.|....+.|+...... .....++.. +-...+.+-.++ .+ ..
T Consensus 34 ~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~ 108 (483)
T PRK09442 34 NEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YN--AV 108 (483)
T ss_pred cceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--Cc
Confidence 34445566667787777777776665 77888877777776421111 011111111 111222222232 22 34
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (342)
|.+|.-++-||++..+.+..+...+..++....-+...+..++.++. ......+++..+++.-.+...-++..
T Consensus 109 T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 109 TLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------ISYETGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred cHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999866667777766666667777777788888887764 23333445556666777888888888
Q ss_pred hHHHHHHHHHHHHH
Q 019330 176 RHINLVSLLLSLGY 189 (342)
Q Consensus 176 ~~~s~~~~~~~~~~ 189 (342)
.++..+-.+..+..
T Consensus 182 ~~TD~iQ~~i~~~~ 195 (483)
T PRK09442 182 VLTDALQGIVMLVG 195 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776644443
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.57 E-value=0.092 Score=51.25 Aligned_cols=157 Identities=6% Similarity=0.093 Sum_probs=100.8
Q ss_pred ccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHhhhccccccccCccccc
Q 019330 21 AAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLT--VMGFVTF-YSYYLMSKVLDHCEKAGRRHIR 96 (342)
Q Consensus 21 ~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~--~~~~~~~-~s~~ll~~~~~~~~~~~~~~~s 96 (342)
+...-.|+-+++.....+..+.+|+ ..++.|....+.|+........ ..+.+.. .-...+.+..++ .+ ..|
T Consensus 34 dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T 108 (471)
T TIGR02119 34 EYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YN--AIT 108 (471)
T ss_pred ceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--Ccc
Confidence 4556667778888888888888886 5677888888888642111100 1111110 001112222222 23 349
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR 176 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (342)
.+|.-++-||++..+++..+...+.+++....-+...+..++.++. .+....+++.++++.-.....-++...
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------LSYLTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999766677888888888888877778888888887764 233334455556677777788888888
Q ss_pred HHHHHHHHHHHHH
Q 019330 177 HINLVSLLLSLGY 189 (342)
Q Consensus 177 ~~s~~~~~~~~~~ 189 (342)
++..+-.+..+..
T Consensus 182 ~td~iQ~~v~~~~ 194 (471)
T TIGR02119 182 LTDAIQGIVMFTG 194 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776544443
No 60
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.49 E-value=0.0089 Score=55.22 Aligned_cols=157 Identities=11% Similarity=0.024 Sum_probs=107.1
Q ss_pred hcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHh--hhcccccccc
Q 019330 13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLM--SKVLDHCEKA 90 (342)
Q Consensus 13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll--~~~~~~~~~~ 90 (342)
..+.+|+.+ .-..+.+..+-|=..++=|+|-+-=|..-.+-||+++.++.++-+++.---.... .-+.|| .
T Consensus 40 A~~~~DGvD----YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~---~ 112 (376)
T PF02554_consen 40 AHTMNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH---K 112 (376)
T ss_pred eeECCCCCC----CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC---C
Confidence 334556643 4455567788899999999999999999999999999999887666544333332 233333 2
Q ss_pred CcccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC
Q 019330 91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP 170 (342)
Q Consensus 91 ~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 170 (342)
.| |.+|++++..||+ +|.+..+...+.+..+..++.....+.+...-. .....++.+...+.+-+..-|
T Consensus 113 -G~--Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~-------~~~~~~~~I~~Ai~~G~~~y~ 181 (376)
T PF02554_consen 113 -GK--SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVNSPW-------AATSSLLFIPIAILFGLLVYK 181 (376)
T ss_pred -Cc--cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-------HHHHHHHHHHHHHHHhHhhee
Confidence 34 9999999999995 788888888888888888888777777654311 122334444444555555545
Q ss_pred CCcchhHHHHHHHHHHH
Q 019330 171 TFHSLRHINLVSLLLSL 187 (342)
Q Consensus 171 ~l~~l~~~s~~~~~~~~ 187 (342)
+=.++...+.+++...+
T Consensus 182 ~~~~~~~~t~i~vvll~ 198 (376)
T PF02554_consen 182 RGGNLGPATIIGVVLLL 198 (376)
T ss_pred cCCchHhhHHHHHHHHH
Confidence 44556777777776443
No 61
>PRK11017 codB cytosine permease; Provisional
Probab=97.42 E-value=0.12 Score=49.44 Aligned_cols=174 Identities=10% Similarity=0.055 Sum_probs=93.1
Q ss_pred cccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCc
Q 019330 94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH 173 (342)
Q Consensus 94 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 173 (342)
..++..++|..||. .|..+..+...+...|=...-....++.++.+.. .....+.+++.++..+.++.. .+
T Consensus 70 G~~~~v~sR~~FG~-~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~G-~~ 140 (404)
T PRK11017 70 GLSTHLLARFSFGE-KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYFG-IS 140 (404)
T ss_pred CcCHHHHHHHHhch-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHH-HH
Confidence 35899999999999 5888887777777766555555556666665542 112224455556666666553 44
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcc
Q 019330 174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPA 251 (342)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~ 251 (342)
.++++...+........+...+....+....+ +..+ ..+. ....+..++...+-.+ .-.+.++..+..|+|+
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~-~~~~--~~~~---~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~ 214 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLD-GLKA--IVPA---EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK 214 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-hhhc--CCCC---CcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc
Confidence 44455444444322222222222222110000 0000 0011 1124555666555555 5678888888877665
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhHhhhccCCC
Q 019330 252 TGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNE 284 (342)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~ 284 (342)
+. ......++.+...+...+|...-.+.|+.
T Consensus 215 ~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 215 IA--VLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred ce--eehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 42 23455555566666666666555556553
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.35 E-value=0.14 Score=48.94 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=96.1
Q ss_pred cCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 27 SKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
|+-+++...+.+..+.+|+ ..++.|....+.|+. +....+...........+..+..++ .+ ..|.+|..++-|
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e~l~~Ry 76 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NG--AYTMPEYLEKRF 76 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cC--CCchhHHHHHHh
Confidence 3344566666666665554 778888888888864 2222222222222333444444333 23 349999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (342)
|++..+.+..+...+..+......+...+..++.++. ......+++.+++++-.+...-++...++..+-.+.
T Consensus 77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 9876777777777788888888888888888888764 233334455556666677777888888887777665
Q ss_pred HHH
Q 019330 186 SLG 188 (342)
Q Consensus 186 ~~~ 188 (342)
++.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 443
No 63
>PRK12488 acetate permease; Provisional
Probab=97.32 E-value=0.13 Score=51.35 Aligned_cols=159 Identities=11% Similarity=0.207 Sum_probs=100.3
Q ss_pred cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHhhhccccccccCcccc
Q 019330 18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFY-SYYLMSKVLDHCEKAGRRHI 95 (342)
Q Consensus 18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~-s~~ll~~~~~~~~~~~~~~~ 95 (342)
+.++.+.-.|+-+++...+.+..+.+++ ..++.|......|+- +....+. ..+.+. ...++.+-.++ .+ ..
T Consensus 58 s~~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~---~g--~~ 130 (549)
T PRK12488 58 SASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLRN---LG--KY 130 (549)
T ss_pred ChHHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHH---CC--Cc
Confidence 3444556677778888888888887776 568899888888875 2222111 111111 12223333332 23 35
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (342)
|.+|.-++=||.+.-|.+..+...+.++.-...-+...+..++.++. .+...-+++..+++.--+..--++..
T Consensus 131 T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 131 TFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------ISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred chHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999988888555678777777777777777777777777777753 23333345555666677777788888
Q ss_pred hHHHHHHHHHHHHHH
Q 019330 176 RHINLVSLLLSLGYS 190 (342)
Q Consensus 176 ~~~s~~~~~~~~~~~ 190 (342)
.++..+-.+..+...
T Consensus 204 ~~td~iQ~~im~~~~ 218 (549)
T PRK12488 204 TWVQIIKAVLLLSGT 218 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877766544433
No 64
>PRK09395 actP acetate permease; Provisional
Probab=97.21 E-value=0.19 Score=50.13 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=93.5
Q ss_pred cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Q 019330 18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR 96 (342)
Q Consensus 18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~s 96 (342)
+.++.+.-.|+-+++...+.+..+.+|+ ..++.|....+.|+.. ....+...+.......++.+-.++ .+ ..|
T Consensus 60 s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~---~g--~~T 133 (551)
T PRK09395 60 SASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN---LG--KYT 133 (551)
T ss_pred CHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh---CC--Ccc
Confidence 3444456667777777777777777765 6788998888888753 221111111111112223332222 33 359
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR 176 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (342)
++|.-+.=||++.-|.+..+...+..+.-...-+...+..++.+.. .+....+++..+++.--+..-=++...
T Consensus 134 ~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-------i~~~~~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 134 FADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-------LNYHVAVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 9999999898655667766666665555556666666776766653 233333455556666667777777777
Q ss_pred HHHHHHHHHHH
Q 019330 177 HINLVSLLLSL 187 (342)
Q Consensus 177 ~~s~~~~~~~~ 187 (342)
++..+-.+..+
T Consensus 207 ~TD~iQ~iim~ 217 (551)
T PRK09395 207 WVQIIKAVLLL 217 (551)
T ss_pred HHHHHHHHHHH
Confidence 77766654433
No 65
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.14 E-value=0.25 Score=49.21 Aligned_cols=156 Identities=13% Similarity=0.207 Sum_probs=94.0
Q ss_pred ccccceeccCChHHHHHHHHHhhhhh-hhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHhhhccccccccCccccc
Q 019330 19 AGAAFVLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIR 96 (342)
Q Consensus 19 ~~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~s 96 (342)
.++.+.-.|+-+++...+.+..+.++ ...++.|....+.|+- +....+. ..+.. ....++.+-.++ .+. .|
T Consensus 59 ~~dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr---~g~--~T 131 (549)
T TIGR02711 59 RSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRN---LGR--YT 131 (549)
T ss_pred chhheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHH---cCC--cc
Confidence 44455667777777777777777666 4788999888788874 2222211 11111 122333433333 333 49
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR 176 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (342)
.+|..++=||.|.-|.+..+...+.+..-....+...+..++.++. .....-+++..+++.--+...-++...
T Consensus 132 ~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 132 FADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------LNYHVAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999888887655567666666666666666667777777777653 222333455556666667777777777
Q ss_pred HHHHHHHHHHHH
Q 019330 177 HINLVSLLLSLG 188 (342)
Q Consensus 177 ~~s~~~~~~~~~ 188 (342)
++..+-.+..+.
T Consensus 205 ~td~iQ~~im~~ 216 (549)
T TIGR02711 205 WVQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHHH
Confidence 777766554433
No 66
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.34 Score=46.41 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=109.7
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcC--CCCcc
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHS 174 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~ 174 (342)
=-.+++..||. +|.++..+.+.+.+.|=...-.+..++...+. ...+...++++..+++.-.++. |-++.
T Consensus 83 qmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-------~~~~~~~~ili~g~l~~l~~ifG~r~l~~ 154 (442)
T COG1457 83 QMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGSG-------TGLPVWAGILIIGVLMTLVTIFGYRALHK 154 (442)
T ss_pred hheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccccC-------CCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567888999 68899999999999999999999888872111 2345566666676676666666 44555
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhc-cCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcc
Q 019330 175 LRHINLVSLLLSLGYSFLVVGACIN-AGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPA 251 (342)
Q Consensus 175 l~~~s~~~~~~~~~~~~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~ 251 (342)
+.+++.......+.+.+ +.... +...+. . ....+....++..+++..+-.+ .-+...+..+-+|+|+
T Consensus 155 l~~~a~~~~~~lf~~l~---~~~~~~~~~~~~------~-~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 155 LERIAVPLLLLLFLYLL---ALLFRSKGGLDA------L-WVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHhcccccce------e-eccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 55555554443333322 22222 111111 0 0011122335666666655555 6677888888888776
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhHhhhccCCCC-chhhhccCC
Q 019330 252 TGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNES-NSNILKSLM 294 (342)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~ 294 (342)
.++.-.....+......+-.+.|.+.-.+-|+.. ..+....+.
T Consensus 225 ~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G 268 (442)
T COG1457 225 PSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG 268 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 3334456667777777777788888887777666 334444444
No 67
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.99 E-value=0.16 Score=48.51 Aligned_cols=275 Identities=18% Similarity=0.208 Sum_probs=144.9
Q ss_pred CCCCCchhhhcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhH--HHHHHHHHHHHHHHHHHHhh
Q 019330 4 PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGL--GFTCLTVMGFVTFYSYYLMS 81 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~--g~~~l~~~~~~~~~s~~ll~ 81 (342)
+.+.||++. ++|-+.++..+|.=++++-..-=....++++.-.+...--+.|+=. +.+... .-|....+.
T Consensus 34 ~s~~~~fL~---N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~-----vG~~~~~~f 105 (572)
T KOG2466|consen 34 ESLSESFLT---NPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVW-----VGYLFTAIF 105 (572)
T ss_pred chhcccccc---CCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHH-----HHHHHHHHH
Confidence 345566665 6666665555666687776666666666666666655555666543 332222 222222211
Q ss_pred hccccccccC-cccccHHHHHHHHhCcchHHHH---HHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc------CC----
Q 019330 82 KVLDHCEKAG-RRHIRFRELAADVLGSGWMFYF---VIFIQTAINTGVGIGAILLAGECLQIMYSDLY------PN---- 147 (342)
Q Consensus 82 ~~~~~~~~~~-~~~~sy~~l~~~~~G~~~g~~~---v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~------~~---- 147 (342)
-..+.. .| .-+.+++-..+..||- +|..+ ..+...+..+|+ ..-+.+++.+-+++... ||
T Consensus 106 ~~lns~--~G~~yhIsFpv~sR~sFGi-ygS~~pIi~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~ 179 (572)
T KOG2466|consen 106 LVLNSR--PGSDYHISFPVLSRSSFGI-YGSLWPIINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGK 179 (572)
T ss_pred HHHccC--CCcccccceeeeeeeehhh-hHhHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCC
Confidence 111111 22 2356888888888887 55443 333333333443 23455666665554421 22
Q ss_pred CCchHHHHH--HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHH
Q 019330 148 GSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAF 225 (342)
Q Consensus 148 ~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (342)
......+++ +++-++.+|+.+.| .++++++=....+.+...++.+++....+--..++-.++ +.........|.+.
T Consensus 180 ~~~tt~e~i~FfIFwv~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~-~st~~gs~~aWa~~ 257 (572)
T KOG2466|consen 180 PGTTTYEFIGFFIFWVASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDS-KSTVSGSAHAWAFV 257 (572)
T ss_pred CCCchHHHHHHHHHHHHhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccC-CCcccccchhHHHH
Confidence 233444444 44557777877775 677777766666555544444444333322111111111 11111122345666
Q ss_pred HHHHHHHHHH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHH----HHHhhHhhhccCCCC--chhhhccCCCC
Q 019330 226 TSISIIAAIF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTF----YSAAVSGYWAFGNES--NSNILKSLMPD 296 (342)
Q Consensus 226 ~~~~i~~fsf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y----~~~g~~gy~~fg~~~--~~~il~~~~~~ 296 (342)
.++...+-.| ...|.|..-+=-|+|.+. ...-.++.-+.+.+. .+.+..++..||.+. +-++++++..+
T Consensus 258 ~~i~~~~~~fstl~~N~pDFsRF~ksp~a~--~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~ 334 (572)
T KOG2466|consen 258 RSIMSCIANFSTLIVNAPDFSRFAKSPNAI--WWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDT 334 (572)
T ss_pred HHHHHHHhccchhhccCchhHhhcCCCCcc--chhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhcc
Confidence 6666666666 778888877777777553 222233333333333 344556888999995 55778777754
No 68
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.72 E-value=0.036 Score=53.56 Aligned_cols=239 Identities=11% Similarity=0.089 Sum_probs=110.4
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHH--hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFR--GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~--~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~ 103 (342)
+|+.+.++-+..-....+....+.+-.... ..++..+++..++...+...-..+....-.+ .+ .++..++|.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---~G---l~~~v~sR~ 79 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---TG---LPTMVLSRA 79 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C------HHHHTTT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---cC---CCchhcchh
Confidence 555554544444444444444333333322 2344445544444433333222222222111 22 368899999
Q ss_pred HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCC--------CchHHHHH--HHHHHHHHHHhcCCCCc
Q 019330 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG--------SLKLYEFI--AMVTVVMIVLSQLPTFH 173 (342)
Q Consensus 104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~--------~~~~~~~~--~i~~~i~~pl~~~~~l~ 173 (342)
.||. .|..+..+...+...|=...-....++.+..+.+...+.. ......++ ++..++..+.... -.+
T Consensus 80 ~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-g~~ 157 (440)
T PF02133_consen 80 SFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIY-GMK 157 (440)
T ss_dssp TS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCT-HHH
T ss_pred ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhc-CHH
Confidence 9999 5999999999999999999999999999999887543210 00111121 2223344444433 355
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcc
Q 019330 174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPA 251 (342)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~ 251 (342)
.++.+..+.........+........+... .+..+.+.... +.+ .+..++...+-.+ .-.+.++..+.+|+++
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~--~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~ 232 (440)
T PF02133_consen 158 ALRRLAVIAAPILLVVFIGMLIWALSKAGG--GPLLSAPASPS-PSG--SFLAAIALVIGSWISWAPNASDYSRYAKSDT 232 (440)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHCT---HHHCCS--S-----S---HHHHHHHHHCCCHHHHCCCHHHHTTC--HH
T ss_pred HHHhHHhhhhHHHHhhhhheeEEEeecCCc--chhhhCcccch-hHH--HHHHHHHHHHhhhhhhhhccccHHhhCCCCC
Confidence 555555555443322222222222221100 00001000000 000 2444444444333 4566778888888766
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhHhhh
Q 019330 252 TGKMVKGLLMCYSVIFVTFYSAAVSGYW 279 (342)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~ 279 (342)
+. .+...+++.........+++.+-.
T Consensus 233 ~~--~~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 233 SA--WWGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc--EEEEeehhhhHHHHHHHHHHHHHH
Confidence 53 455666666666666665555443
No 69
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.32 E-value=1.2 Score=43.72 Aligned_cols=148 Identities=9% Similarity=0.060 Sum_probs=93.3
Q ss_pred ccCChHHHHHHHHHhhhhh-hhhchHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLT---VMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG-~GiL~lP~~f~~~G~~~g~~~l~---~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~ 101 (342)
.|+-..+-......-+.++ --.+++|....+.|+...-.... .......+-...+.+-.++ .+ -.|.+|.-
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~--~~T~~d~l 111 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RG--ATTIPDFL 111 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--CccHHHHH
Confidence 3333333455555555555 78999999999999874322222 2222222223333333222 22 35999999
Q ss_pred HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (342)
++=||+++.|.+..+...+..+.-+..-++..+..++..+. .+...-+++.+.++..-...--++...++..+
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 99999557889999999999999999999999999966654 23333334444555566666667777777665
Q ss_pred HHHH
Q 019330 182 SLLL 185 (342)
Q Consensus 182 ~~~~ 185 (342)
--..
T Consensus 185 qg~i 188 (493)
T COG0591 185 QGLI 188 (493)
T ss_pred HHHH
Confidence 5443
No 70
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.27 E-value=0.22 Score=47.55 Aligned_cols=150 Identities=13% Similarity=0.231 Sum_probs=87.4
Q ss_pred ccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.|+-+++...+.+..+.+|+ ..++.|....+.|+. +....+............+.+-.++ .+ ..|.+|.-++-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e~~~~R 78 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRR---SG--AVTIPEYLEKR 78 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHH---TT----SHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcc---cc--hhhhhhhhhhh
Confidence 34456677777777777776 678889888888886 3333333333333344445554443 33 34999999999
Q ss_pred hCcch-HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330 105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (342)
Q Consensus 105 ~G~~~-g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (342)
||++. .+.+..+...+.........+...+..++.+++ .+....+++..+++.-.+..--++...+...+-.
T Consensus 79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred cCCchhhhhhcccccchhhhhhhhccccccccchhhccc-------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 99964 256655656666667777777777887777754 3444445555666666778877888887777666
Q ss_pred HHHHH
Q 019330 184 LLSLG 188 (342)
Q Consensus 184 ~~~~~ 188 (342)
++.+.
T Consensus 152 ~i~~~ 156 (406)
T PF00474_consen 152 VIMII 156 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 71
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.16 E-value=0.22 Score=48.45 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=76.3
Q ss_pred cccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHh--hhccccccccCcc
Q 019330 16 DSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLM--SKVLDHCEKAGRR 93 (342)
Q Consensus 16 ~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll--~~~~~~~~~~~~~ 93 (342)
.+|+.+ .-..+.+..+-|=+.++-|+|-+-=|..-++.||.+|.++.++-+++.---...+ .-+.|| .+ +
T Consensus 43 ~nDG~D----YVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~---~G-~ 114 (575)
T COG1966 43 KNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH---GG-K 114 (575)
T ss_pred ccCCcc----cccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc---CC-c
Confidence 556654 4445567778888889999999999999999999999999888766554332222 223332 22 3
Q ss_pred cccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhH
Q 019330 94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137 (342)
Q Consensus 94 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l 137 (342)
|.+|++++..|++ .+.+..+...+....+..++.......+
T Consensus 115 --Si~~ia~~~lG~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 115 --SIGEIAGKYLGRT-AKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred --cHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 5576666555555555444444444433
No 72
>PRK15015 carbon starvation protein A; Provisional
Probab=96.16 E-value=0.2 Score=49.84 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHH--HhhhccccccccCcccccHHHHHHHHhCc
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYY--LMSKVLDHCEKAGRRHIRFRELAADVLGS 107 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~--ll~~~~~~~~~~~~~~~sy~~l~~~~~G~ 107 (342)
+.+--+-|=+.++=|+|-+-=|..-.+.||+++.++.++-.++.---.. .|.-+.|+ . .| |.+|++++..|+
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~---~-Gr--Sig~ia~~~iG~ 157 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR---D-GR--SLGELVKEEMGP 157 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC---C-Cc--cHHHHHHHHhhH
Confidence 3345677888899999999999999999999999998876554332222 23333333 2 34 999999999999
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCch-HHHHHHHHHHHHHHHhc-CCCCcchhHHHHHHHHH
Q 019330 108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLK-LYEFIAMVTVVMIVLSQ-LPTFHSLRHINLVSLLL 185 (342)
Q Consensus 108 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-~~~~~~i~~~i~~pl~~-~~~l~~l~~~s~~~~~~ 185 (342)
+ ++.+..+...+.+.....++..++...+..- .+. ...++.+...+.+-+.+ .++.......|.+++++
T Consensus 158 ~-~~~lfli~i~~iliiviAvfalvvv~al~~s--------P~~~fsv~~tIpiAl~mG~~l~~~r~g~v~~~SiiGvvl 228 (701)
T PRK15015 158 T-AGVIALVACFMIMVIILAVLAMIVVKALTHS--------PWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVF 228 (701)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------cHHHHHHHHHHHHHHHHHHHheeecCCchHHHHHHHHHH
Confidence 4 7777777776666666666666655555321 111 12233333333333322 23455555667777764
Q ss_pred H
Q 019330 186 S 186 (342)
Q Consensus 186 ~ 186 (342)
.
T Consensus 229 l 229 (701)
T PRK15015 229 L 229 (701)
T ss_pred H
Confidence 3
No 73
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.99 E-value=0.33 Score=46.43 Aligned_cols=81 Identities=14% Similarity=0.027 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccH-----HHHH
Q 019330 28 KGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRF-----RELA 101 (342)
Q Consensus 28 ~~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy-----~~l~ 101 (342)
+-|.+|+.+..+.+.+|+| |+.+|.+.+..| ..+++++-+.+++..-+.+.-.-...+.++. .++.+| ..+-
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DADGVFRGGPMYYIK 123 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CCCCCEecChHHHHH
Confidence 3578999999999999998 999999976665 5577777666665554433332222221111 111136 6777
Q ss_pred HHHhCcchH
Q 019330 102 ADVLGSGWM 110 (342)
Q Consensus 102 ~~~~G~~~g 110 (342)
+.+.||..|
T Consensus 124 ~gl~~k~lg 132 (425)
T TIGR00835 124 KGLGMRWLA 132 (425)
T ss_pred HHhCccHHH
Confidence 777666334
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.83 E-value=2.1 Score=42.14 Aligned_cols=162 Identities=7% Similarity=-0.006 Sum_probs=89.7
Q ss_pred cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHhhhccccccccCcccc
Q 019330 18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHI 95 (342)
Q Consensus 18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~ 95 (342)
+.++.+.-.|+-+++...+.+..+.+++ ..++.|....+.|+-. . +..+...+.. ....++..-.+.....+.+..
T Consensus 31 s~~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 108 (502)
T PRK15419 31 NFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNAL 108 (502)
T ss_pred ChhHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 3444556667777887777777777766 6677898888888753 1 1111111111 111122111110000011234
Q ss_pred cHHHHHHHHhCcc--hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCc
Q 019330 96 RFRELAADVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH 173 (342)
Q Consensus 96 sy~~l~~~~~G~~--~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 173 (342)
|.+|.-++=||++ .-+.+..+...+....-+..-+...+..++.++. .+....+++.++++.--+..-=++
T Consensus 109 T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~ 181 (502)
T PRK15419 109 TLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-------MSYETALWAGAAATILYTFIGGFL 181 (502)
T ss_pred eHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhhhHH
Confidence 8889888889863 2333444444444444444445556666666653 233334455566777777887888
Q ss_pred chhHHHHHHHHHHHH
Q 019330 174 SLRHINLVSLLLSLG 188 (342)
Q Consensus 174 ~l~~~s~~~~~~~~~ 188 (342)
...++-.+-.+.++.
T Consensus 182 aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 182 AVSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777655443
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.80 E-value=2.4 Score=42.39 Aligned_cols=156 Identities=8% Similarity=0.028 Sum_probs=94.5
Q ss_pred ccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccH
Q 019330 19 AGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRF 97 (342)
Q Consensus 19 ~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy 97 (342)
.++.+.-.|+-++|...+.+..+.+++ ..++.|......|+-.-... ............++.+-.++ .+ ..|.
T Consensus 24 ~~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr---~~--~~T~ 97 (552)
T TIGR03648 24 TSEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRK---FG--KYTV 97 (552)
T ss_pred hHHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHH---CC--CccH
Confidence 344556677778888888888887755 67888887777776421111 11111111122344444443 33 3488
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhH
Q 019330 98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH 177 (342)
Q Consensus 98 ~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 177 (342)
+|.-++=||+|..|++..+...+....-....+...+..++.+.. .+...-+++..+++.--+..--++...+
T Consensus 98 ~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~ 170 (552)
T TIGR03648 98 PDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------VDFETGVFIGMAIVFFYAVLGGMKGVTW 170 (552)
T ss_pred HHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 898888898655567776666666666666666677777777653 2333334455566666677777777777
Q ss_pred HHHHHHHHHH
Q 019330 178 INLVSLLLSL 187 (342)
Q Consensus 178 ~s~~~~~~~~ 187 (342)
.-.+-.+.++
T Consensus 171 TD~iQ~iim~ 180 (552)
T TIGR03648 171 TQVAQYIVLI 180 (552)
T ss_pred HHHHHHHHHH
Confidence 7666654433
No 76
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.69 E-value=0.37 Score=46.95 Aligned_cols=247 Identities=11% Similarity=0.074 Sum_probs=112.6
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchH
Q 019330 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (342)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (342)
.+...|.+++..-|.. -++.+.....|-..-.-..++.+.+...+..-|.|.+-..|..+.- |--.+. .-|+|++
T Consensus 55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgL---y~waa~-lap~k~~ 129 (550)
T KOG1289|consen 55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGL---YFWAAV-LAPPKYG 129 (550)
T ss_pred HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcH---HHHHHH-hcCcchh
Confidence 3344455555544432 2444444434444333334444555555566677765554433432 322222 2266666
Q ss_pred HH---HHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC--CCcchhHHHHHHHHH
Q 019330 111 FY---FVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP--TFHSLRHINLVSLLL 185 (342)
Q Consensus 111 ~~---~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~~~~ 185 (342)
+. ++.....+-+.....+-....++.+.......+++...+......+...+.+..+++. --+.+++++.+++..
T Consensus 130 ~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~ 209 (550)
T KOG1289|consen 130 PFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYL 209 (550)
T ss_pred hHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 43 3333333222222222222333333333333334432222111223333333333322 235666777666665
Q ss_pred HHHHHHHhhhhhhccCcCCCCCCCCccccC----cc--hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhH
Q 019330 186 SLGYSFLVVGACINAGFSKNAPPKDYSLES----SK--SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKG 258 (342)
Q Consensus 186 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~ 258 (342)
.+...++..+.......++.+-+++...++ .+ +.+-+.+.-++-.-.+.+ |......+.+|-|+++++ .+|.
T Consensus 210 ~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~-aPrg 288 (550)
T KOG1289|consen 210 NLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKA-APRG 288 (550)
T ss_pred HHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhh-ccHH
Confidence 444333222221111111100001111111 11 112245555566666777 888999999999999874 6777
Q ss_pred HHHHHHHHHHHHHHHhhHhhhccCC
Q 019330 259 LLMCYSVIFVTFYSAAVSGYWAFGN 283 (342)
Q Consensus 259 ~~~~~~~~~~~y~~~g~~gy~~fg~ 283 (342)
+..+..+++++=..+-+.-..+-+|
T Consensus 289 Ii~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 289 IISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777766655555554555564
No 77
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.32 E-value=0.45 Score=44.94 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=60.5
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (342)
-..+++++.||+ .|+.+..+.+.+.|++++++.+...++.++++.+ ..+.+.|.++..+..+-++.. .++++
T Consensus 256 ~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~------k~~y~~~v~~~~l~s~~ia~~-Gl~~I 327 (378)
T TIGR00796 256 ILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP------KLSYKTWVIVFTLFSFIVANL-GLTQI 327 (378)
T ss_pred HHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHh-CHHHH
Confidence 577899999999 7999999999999999999999999999988854 256666766666666655554 35544
Q ss_pred hHHHHHH
Q 019330 176 RHINLVS 182 (342)
Q Consensus 176 ~~~s~~~ 182 (342)
-.++..-
T Consensus 328 i~~~~Pv 334 (378)
T TIGR00796 328 ISISIPV 334 (378)
T ss_pred HHHHHHH
Confidence 4443333
No 78
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.26 E-value=0.065 Score=53.12 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330 223 SAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSG 277 (342)
Q Consensus 223 ~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (342)
++-..++++.-+= +...=-..-.|+|+|++. ++|-...+...++++|.+..+.-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkS-IP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKS-IPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCcccc-CCccchHHHHHHHHHHHHHHHHh
Confidence 4444555554442 332223345699999984 89999999999999999877643
No 79
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.11 Score=50.86 Aligned_cols=227 Identities=11% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHH
Q 019330 33 HAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFY 112 (342)
Q Consensus 33 ~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~ 112 (342)
....|+...|+ .|=++|...|+|...+.+++.....++..|..=-....+++...+.. .|--+++ ..|+++| -
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yflis~-slg~efg-g 111 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYFLISR-SLGPEFG-G 111 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEEEEEe-ccccccc-c
Confidence 34445544443 46789999999999999888887776666543333333332111111 2333332 3466555 4
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH---H
Q 019330 113 FVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG---Y 189 (342)
Q Consensus 113 ~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~---~ 189 (342)
.+.++..+.+.-.+..|++..++....+++.... +.... .-.+..++.+-++..+ .+|.+-+-+++-+. .
T Consensus 112 sigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~-~~i~g--i~~vt~~ill~i~~ag----~~w~~k~q~~ll~il~ia 184 (643)
T KOG2083|consen 112 SIGIIYAFANAVATAMYVVGFAESVAHLFETESK-EMIDG--IGSVTVLILLAINVAG----VEWEAKLQIVLLLILLIA 184 (643)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH-HHhcc--hhHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHH
Confidence 5556666777788899999999999999876320 01111 1122333444444443 23333333321111 1
Q ss_pred HHHhhhhhhc-cC-cCCC--CCCCCccccC-cc-hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330 190 SFLVVGACIN-AG-FSKN--APPKDYSLES-SK-SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC 262 (342)
Q Consensus 190 ~~~~i~~~i~-~~-~~~~--~~~~~~~~~~-~~-~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (342)
..--+..++. .. .+.+ ....+.-.++ .+ ..+-..+|+-++++.=+. +.-.=..+..++|+|++. .++-...+
T Consensus 185 i~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~-IP~GaL~A 263 (643)
T KOG2083|consen 185 IADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKA-IPLGALLA 263 (643)
T ss_pred HHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhh-cccchhhh
Confidence 1111111111 11 0000 0000000000 00 000124555556666665 555555677899999874 78888899
Q ss_pred HHHHHHHHHHHh
Q 019330 263 YSVIFVTFYSAA 274 (342)
Q Consensus 263 ~~~~~~~y~~~g 274 (342)
...+..+|+.+.
T Consensus 264 i~vst~~yl~~i 275 (643)
T KOG2083|consen 264 IGVSTLLYLIFI 275 (643)
T ss_pred hhhhhhhhhhhh
Confidence 999999997554
No 80
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.17 E-value=0.23 Score=47.48 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=64.0
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (342)
=..+++++.+|+ .|..+..+++.+.|+-++++-....+|.++++++ ..+.+.|.++.+++-+-++... ++++
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~------kisY~~~v~i~~i~S~~ian~G-l~~I 333 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP------KISYKVWVIIFTIFSFIIANLG-LDQI 333 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHHHhC-HHHH
Confidence 577889999999 7999999999999999999999999999999986 4677788888877777777773 5544
Q ss_pred hHHHHH
Q 019330 176 RHINLV 181 (342)
Q Consensus 176 ~~~s~~ 181 (342)
-.++.-
T Consensus 334 i~~s~P 339 (427)
T PF05525_consen 334 IKISVP 339 (427)
T ss_pred HHHHHH
Confidence 444433
No 81
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=94.37 E-value=5.4 Score=38.77 Aligned_cols=195 Identities=14% Similarity=0.150 Sum_probs=103.1
Q ss_pred ccccHHHHHHHHhCcchHHH---HHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-----CCC-----CchHHHHH--H
Q 019330 93 RHIRFRELAADVLGSGWMFY---FVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-----PNG-----SLKLYEFI--A 157 (342)
Q Consensus 93 ~~~sy~~l~~~~~G~~~g~~---~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-----~~~-----~~~~~~~~--~ 157 (342)
.+.+|+.+.+..||- +|.. +......+.-+|+. .-..+.+++.++.... ++. ..+...++ +
T Consensus 101 ~gIpFpv~~RaSFGi-~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ 176 (497)
T COG1953 101 YGIPFPVLSRASFGI-YGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFF 176 (497)
T ss_pred cCCCchHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHH
Confidence 457999999999988 4543 34444444455543 2334444544443322 121 22333333 2
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCcc-ccCcchhhHhhHHHHHHHHHHHH-
Q 019330 158 MVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF- 235 (342)
Q Consensus 158 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~fsf- 235 (342)
++-++.++.-+ +..++++++-..+-.++...+.-+++....+.-... +..+.+ -........+.+..++...+-.|
T Consensus 177 ifW~l~~l~~~-~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~-~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 177 IFWVLQLLVLF-KGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSS-ILGELPAGTVSGSNSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcC-ccccCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 23344444444 458888887666666554444433333332221100 001111 01111223455666665555555
Q ss_pred -hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHH----hhHhhhccCCCC--chhhhccCCC
Q 019330 236 -GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSA----AVSGYWAFGNES--NSNILKSLMP 295 (342)
Q Consensus 236 -~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~----g~~gy~~fg~~~--~~~il~~~~~ 295 (342)
..-|+|...+.-|+|++.... -.++.-+.+.++-++ +...+..||++. +.++++++++
T Consensus 255 tl~lN~~DFsRfa~s~~~~~~g--q~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~ 319 (497)
T COG1953 255 TLALNIPDFTRFAKSQKAQIWG--QLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLS 319 (497)
T ss_pred HHhcCCchhhcccCChhhhhhc--cchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhcc
Confidence 778999988888776653222 334455555555444 445788999995 6788888885
No 82
>PRK10484 putative transporter; Provisional
Probab=94.21 E-value=6.4 Score=39.02 Aligned_cols=165 Identities=5% Similarity=-0.110 Sum_probs=81.5
Q ss_pred cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Q 019330 18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR 96 (342)
Q Consensus 18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~s 96 (342)
+.++.+.-.|+-+++-..+.+..+.+++ ..++.|....+.|+.... .....++........+..-.++ . +..|
T Consensus 29 s~~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r---~--~~~T 102 (523)
T PRK10484 29 SSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK---S--GITT 102 (523)
T ss_pred CchhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh---c--CCcc
Confidence 3445556677778887777777776655 677888877777865311 1111111111122222222222 2 3359
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHh-hHHHHHHhhhhhHHHHhhhh-cCCCCchHHHHH--HHHHHHHHHHhcCCCC
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTAINTG-VGIGAILLAGECLQIMYSDL-YPNGSLKLYEFI--AMVTVVMIVLSQLPTF 172 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g-~~~~y~i~~~~~l~~l~~~~-~~~~~~~~~~~~--~i~~~i~~pl~~~~~l 172 (342)
.+|.-++-||++. +.+......+.... .+...+...+..+++++... .-+-......+. ++.+++..--+..-=+
T Consensus 103 ~~e~l~~Ryg~~~-~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl 181 (523)
T PRK10484 103 IPDFLEERYDKTT-RRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGL 181 (523)
T ss_pred HHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 9999999999964 34443333322222 22222223334444433210 001111111121 1223444555666778
Q ss_pred cchhHHHHHHHHHHHHH
Q 019330 173 HSLRHINLVSLLLSLGY 189 (342)
Q Consensus 173 ~~l~~~s~~~~~~~~~~ 189 (342)
+...++-.+-.+.++..
T Consensus 182 ~aV~~TD~iQ~vim~i~ 198 (523)
T PRK10484 182 KAVAVSDTINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877776544433
No 83
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=93.72 E-value=7.5 Score=38.12 Aligned_cols=160 Identities=9% Similarity=0.096 Sum_probs=85.7
Q ss_pred ccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHH
Q 019330 21 AAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRE 99 (342)
Q Consensus 21 ~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~ 99 (342)
+.+.-.|+-+++...+.+..+.+++ ..++.|....+.|+.. ........+........+.+-.+...+.+.+..|.+|
T Consensus 30 df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e 108 (487)
T TIGR02121 30 DYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPD 108 (487)
T ss_pred HHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHH
Confidence 3445566667777777777776664 5677887777788752 2222111111222223333322211000123458999
Q ss_pred HHHHHhCcc--hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhH
Q 019330 100 LAADVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH 177 (342)
Q Consensus 100 l~~~~~G~~--~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 177 (342)
.-++=||++ .-+.+..+...+....-...-+...+..++.+++ .+....+++..++..--+...-++...+
T Consensus 109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-------i~~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-------LDYKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999963 2223334333333333444445556666666653 2233334455566666677777787777
Q ss_pred HHHHHHHHHHH
Q 019330 178 INLVSLLLSLG 188 (342)
Q Consensus 178 ~s~~~~~~~~~ 188 (342)
+..+-.+..+.
T Consensus 182 TD~iQ~~i~~~ 192 (487)
T TIGR02121 182 TDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHH
Confidence 77776654433
No 84
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.68 E-value=1.6 Score=41.25 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=82.4
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccc-ccccCcccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHH
Q 019330 52 YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130 (342)
Q Consensus 52 ~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 130 (342)
...-.+|++.++.+-++...+.+.. ...++ .+..+..-.=..+..++.||+ .|+++..+++.+.|+-+++.-+
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi 297 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLI 297 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344577776666655554444443 11111 010111112467789999999 8999999999999999999999
Q ss_pred HhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 131 LLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 131 i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
..++|.++++.+ ..+...|..+++++-+-++... ++++-..|.--+.
T Consensus 298 ~a~aefF~~~~p------~~SY~~~v~if~i~sflvan~G-L~~Ii~isvPvL~ 344 (431)
T COG1114 298 VACAEFFSKLVP------KLSYKTWVIIFTLISFLVANLG-LEQIIKISVPVLT 344 (431)
T ss_pred HHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 999999999986 4677888888888888777773 5555555554443
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.19 E-value=14 Score=35.04 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHhhhhhhhhchHHHHHH-h--hChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHH
Q 019330 36 FHLTTAIVGPTILTLPYVFR-G--LGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFY 112 (342)
Q Consensus 36 ~~l~~~~iG~GiL~lP~~f~-~--~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~ 112 (342)
+.+..-.+|+|.|-.|-... + ..|..+.+..++.+...-.-... +.. +.+ . +|.++.++ +||+.+..
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~---~~g-G--~~~~l~~~-~g~~f~~l 71 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA---LVG-G--GYDSLSAR-IGKVFGIL 71 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee---ecC-C--CHHHHHHH-hChHHHHH
Confidence 34566789999999996543 2 34555555555555544433322 111 122 2 79999887 47756643
No 86
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=90.98 E-value=16 Score=35.40 Aligned_cols=221 Identities=16% Similarity=0.170 Sum_probs=119.4
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHh--hhccccccccCcccccHHHHHHHHhCcchHHHHHHHHHHHHH
Q 019330 45 PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLM--SKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAIN 122 (342)
Q Consensus 45 ~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll--~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~ 122 (342)
++.|.++....-.|+= |..- .+++..-|....+ .+-.|+ -++ .|++|....=++.+.-|++..+.-++-.
T Consensus 60 ASflGiag~I~~~GYd-G~~Y--~iG~~~Gy~i~~fL~A~~LRk---~Gk--yT~aD~~a~Ry~~~~~R~~aa~~ti~vs 131 (529)
T COG4147 60 ASFLGIAGLIFISGYD-GLIY--SIGWTGGYPILLFLIAEYLRK---LGK--YTFADFIADRYKSNPARLLAAIGTIIVS 131 (529)
T ss_pred HhhhchhHhhhhcccc-hHHH--HHHHHHHHHHHHHHHHHHHHh---cCC--cchHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4566667666666654 2222 2344444444333 333343 333 4899987777766667787777776667
Q ss_pred HhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH-HHhhhhhhcc-
Q 019330 123 TGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYS-FLVVGACINA- 200 (342)
Q Consensus 123 ~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~-~~~i~~~i~~- 200 (342)
+.-.+.-++..+..+..+++. ....-+++..+++.--....-++...|+..+--+..+... +..+.....-
T Consensus 132 ~~YliaQmvGaG~li~~l~gv-------~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~ 204 (529)
T COG4147 132 FLYLIAQMVGAGLLISLLLGV-------PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLG 204 (529)
T ss_pred HHHHHHHHHhhHHHHHHHhCC-------CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777788888888887752 2222234555666777778888888888776554332222 2111111110
Q ss_pred CcC--------CCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcC-CccccchhhHHHHHHHHHHHHH
Q 019330 201 GFS--------KNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLA-PPATGKMVKGLLMCYSVIFVTF 270 (342)
Q Consensus 201 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~-~p~~~~~~~~~~~~~~~~~~~y 270 (342)
+.. +.++..|......+.....+-.+.++...--. +..-+|.+.-..- -|+-|.-+|.+.++..+...+|
T Consensus 205 g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fY 284 (529)
T COG4147 205 GNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFY 284 (529)
T ss_pred CCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 000 00111110000001111122333333333223 6777776543322 3555556789999999999999
Q ss_pred HHHhhHhhhc
Q 019330 271 YSAAVSGYWA 280 (342)
Q Consensus 271 ~~~g~~gy~~ 280 (342)
+..-..|+.+
T Consensus 285 i~~~~ig~~A 294 (529)
T COG4147 285 ILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHH
Confidence 9776666553
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=90.40 E-value=4.9 Score=38.66 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=62.4
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR 176 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (342)
.....++.+|+ +|+++..+.+.+.|+-++++-....++.+++.++ .+.+.|.++.+++.++++... ++++-
T Consensus 267 l~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~G-~~~II 337 (439)
T PRK15433 267 LHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNLG-LSQLI 337 (439)
T ss_pred HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 45668889999 8999999999999999999999999999998863 466777788888888888874 55554
Q ss_pred HHHHHHH
Q 019330 177 HINLVSL 183 (342)
Q Consensus 177 ~~s~~~~ 183 (342)
..+.--+
T Consensus 338 ~~s~PiL 344 (439)
T PRK15433 338 QISVPVL 344 (439)
T ss_pred HHHHHHH
Confidence 4444443
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=89.92 E-value=19 Score=34.69 Aligned_cols=285 Identities=11% Similarity=0.067 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHH---hhChhHHHHHHHHHHHHHH-HHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFR---GLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~---~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
..+..-+.+..-..|+|=|=.|-... ..-|..+.+..++.+..-- -+...+.+. .. +++++++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~--------~g--~~~~l~~rv- 77 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV--------GG--GVDSLSTPI- 77 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--------CC--CHHHHhhhc-
Confidence 56778899999999999999996543 3446666666655554222 122112222 12 688888875
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (342)
||+.+..+..+ ...+.|-+.+-=-..+...+--...+.+++......+.+++..+.+-+++-|+ +.+-.+|-+.
T Consensus 78 ~~~f~~~f~~~--i~l~IGP~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~----klvd~iGK~L 151 (439)
T PRK15433 78 GKVAGVLLATV--CYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPG----KLLDTVGNFL 151 (439)
T ss_pred chHHHHHHHHH--HHHHHhhccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChh----hHHHHhHHHH
Confidence 45445332211 11122211100000111111001111122112222344555556666665543 3344444433
Q ss_pred H---HHHHHHhhhhhhccCcCCC-CCCCCccccC--cchhhHhhHHHHHHHHHHHHhhccHHHHhh-hcCCcccc-c-hh
Q 019330 186 S---LGYSFLVVGACINAGFSKN-APPKDYSLES--SKSARIFSAFTSISIIAAIFGNGILPEIQA-TLAPPATG-K-MV 256 (342)
Q Consensus 186 ~---~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~i~~fsf~~~~~~~i~~-~m~~p~~~-~-~~ 256 (342)
+ +....++++.++.+...+. .+..++.-.+ ..-.+=.+...+++.+.|+- ..+-.+.+ ..+++++. | ..
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~--iii~~i~~~G~~~~~~~~k~t~ 229 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI--VIVNAARSRGVTEARLLTRYTV 229 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHH
Confidence 1 2222234444454433221 1112221110 00000125556677777774 33333333 24333331 1 23
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhc---cCCC-CchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhh
Q 019330 257 KGLLMCYSVIFVTFYSAAVSGYWA---FGNE-SNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSL 332 (342)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~---fg~~-~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~ 332 (342)
++-.++...-.++|...+..|-.. +++. ..+.++...-... -.++...+--+.+.+.++++---.+..+-+.
T Consensus 230 ~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~----~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 230 WAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT----FGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677888877777644 2222 2233333332110 1223333444455566666666666666666
Q ss_pred HHHHH
Q 019330 333 QLFQF 337 (342)
Q Consensus 333 ~~~~~ 337 (342)
+++.+
T Consensus 306 f~~~~ 310 (439)
T PRK15433 306 FAQYV 310 (439)
T ss_pred HHhhc
Confidence 66543
No 89
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=87.24 E-value=26 Score=32.80 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=47.3
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhc--CCCCc
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFH 173 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~ 173 (342)
+..|..++-+||+++ ++.-+...+.+......-+...+.-++.++. .....+.++.++..+-+.+ .++.+
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-------~~~~~~~~~~~~~~~~ll~~~~~~y~ 114 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLFG-------IPLWIWVLLVAVIAILLLWLSSGGYR 114 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHHHHHHHhccch
Confidence 788888888888655 5555666666666666666666666666542 2334444444444444444 56666
Q ss_pred chhHHHHHH
Q 019330 174 SLRHINLVS 182 (342)
Q Consensus 174 ~l~~~s~~~ 182 (342)
.+..+...-
T Consensus 115 ~~E~~~~~l 123 (358)
T PF01566_consen 115 RLERILKVL 123 (358)
T ss_pred HHHHHHHHH
Confidence 666654433
No 90
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=83.58 E-value=49 Score=32.79 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHH-----HHhhHhhhccCC---------CCc
Q 019330 223 SAFTSISIIAAIF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFY-----SAAVSGYWAFGN---------ESN 286 (342)
Q Consensus 223 ~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~-----~~g~~gy~~fg~---------~~~ 286 (342)
-...|++-..|+. +.+.+...-+.+|+.++ ..|...........+-+ .+++.|+.+... +-+
T Consensus 250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n--~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~ 327 (523)
T PF00209_consen 250 VWIAALGQVFFSLSIGFGIMITYGSYNKFKNN--IFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGP 327 (523)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS---SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CH
T ss_pred HHHHHHHHHhhccCCCcceEEEEcCcCCCCcc--ccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCC
Confidence 4578999999999 88888877777665443 44433333333333333 233444443311 111
Q ss_pred -------hhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330 287 -------SNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL 338 (342)
Q Consensus 287 -------~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~ 338 (342)
+.++..+| .++....+-.++..+.-+.|.-.+..+....+++++-
T Consensus 328 ~L~Fi~~P~~~~~~p-------~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~ 379 (523)
T PF00209_consen 328 GLAFIVLPEAFSQMP-------GGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFP 379 (523)
T ss_dssp HHHHTHHHHHHTTST-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CchHHHHHHHHHcCC-------CCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCc
Confidence 13344443 2444455555556666667777777787777777554
No 91
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=83.54 E-value=44 Score=32.21 Aligned_cols=282 Identities=16% Similarity=0.178 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHH---hhChhHHHHHHHHHHHHHHHHH-HHhhhccccccccCcccccHHHHHHHHh
Q 019330 30 EWWHAGFHLTTAIVGPTILTLPYVFR---GLGWGLGFTCLTVMGFVTFYSY-YLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~lP~~f~---~~G~~~g~~~l~~~~~~~~~s~-~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
..+..-+.+.....|+|=|=.|-... ..-|.++.+..++.+..--.-. ..+.+. .. +++++++++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~--------~~--~~~~l~~~v- 72 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS--------GG--GIEDLASRV- 72 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--------CC--CHHHHhccc-
Confidence 34667788899999999999996543 4557777777777665433222 111111 22 688888875
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcC-CCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP-NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
||+.+..+..+. ..+.|-..+-=-..+...+--...+.+ +.......+.+++..+.+-+++-|+ +.+-.+|-+
T Consensus 73 ~~~f~~if~~~i--~l~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~----kivd~iGk~ 146 (427)
T PF05525_consen 73 GPKFALIFTILI--YLSIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPS----KIVDRIGKF 146 (427)
T ss_pred CcHHHHHHHHHH--HHHHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchh----hHHHHHHHH
Confidence 454553332111 111111110000111111111111111 2334444455556566666666543 333334433
Q ss_pred H---HHHHHHHhhhhhhccCcCCCC-CCCCccccCcchhhH---hhHHHHHHHHHHHHhhccHHHHhhhc-CCcccc-c-
Q 019330 185 L---SLGYSFLVVGACINAGFSKNA-PPKDYSLESSKSARI---FSAFTSISIIAAIFGNGILPEIQATL-APPATG-K- 254 (342)
Q Consensus 185 ~---~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~i~~fsf~~~~~~~i~~~m-~~p~~~-~- 254 (342)
. .+....++++.++.+...+.. +..++.-.+. ...+ .+...+++.+.|+ ...+-.+.+.= +++++. |
T Consensus 147 LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f-~~Gf~eGY~TMD~laal~Fg--~iIi~~i~~~g~~~~k~~~~~ 223 (427)
T PF05525_consen 147 LTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPF-FKGFLEGYQTMDALAALAFG--IIIINAIRQKGYKDKKEIKKY 223 (427)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHH-HHHHHHHHhhhhHHHHHHHH--HHHHHHHHHhCCCCHHHHHHH
Confidence 2 222333444455554432211 1111111000 0011 1344556666666 22333332221 112221 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhccC---CCCc-hhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhh
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGYWAFG---NESN-SNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHS 330 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg---~~~~-~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~ 330 (342)
..++-.++...-.++|...+..|.-.-+ +..+ +.++......- . .+.-..+.-+.+.++++++---.+..+-
T Consensus 224 ~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~-~---G~~G~~ll~iiv~lACLTTaIGL~~a~a 299 (427)
T PF05525_consen 224 TIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHL-F---GSAGQILLGIIVFLACLTTAIGLISACA 299 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHH-c---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555667778777777666543 2333 34444443210 0 1112233334555666666555555666
Q ss_pred hhHHH
Q 019330 331 SLQLF 335 (342)
Q Consensus 331 ~~~~~ 335 (342)
+.+++
T Consensus 300 ~yf~~ 304 (427)
T PF05525_consen 300 EYFSE 304 (427)
T ss_pred HHHHH
Confidence 66665
No 92
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=81.74 E-value=51 Score=31.66 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=37.0
Q ss_pred ccCChHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFY 75 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~~~l~~~~~~~~~ 75 (342)
+++-|-+|++..-+.+.+|+| |.....|.. .|-..++++|-+.+++..-
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~~Gma 65 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISALLGMA 65 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHHHHHH
Confidence 445588999999999999997 555666775 5666688888887776543
No 93
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=71.14 E-value=1e+02 Score=29.75 Aligned_cols=292 Identities=13% Similarity=0.051 Sum_probs=137.5
Q ss_pred CChHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330 28 KGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (342)
Q Consensus 28 ~~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (342)
-+|...=....+.+.+|-| +--.||...+.|-. +.++.-+++.+..=--.++.|-.--+...+....+|+.+.. +
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 3455566777778888876 56789998888865 22222222222222223344432110001111236776665 3
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcC----CC-------------CchHHHHHHHHHHHHHHHhcC
Q 019330 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP----NG-------------SLKLYEFIAMVTVVMIVLSQL 169 (342)
Q Consensus 107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~----~~-------------~~~~~~~~~i~~~i~~pl~~~ 169 (342)
|+ . ..+.....+..+..+.-|.++.+-.+..++..... +. ......+.+++ .++.-+...
T Consensus 84 ~~-~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~lt~~iv~ 160 (439)
T COG0733 84 KK-W-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLF-LVLTALIVS 160 (439)
T ss_pred cc-c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHH-HHHHHHHHH
Confidence 43 2 33445556677788888888888888776654221 10 11111121111 111111122
Q ss_pred CCCcc-hhHHHHHHHHHHHHHHHHhhhhhhccC-cCCCCCCCCccccCc-chh-hHhhHHHHHHHHHHHH--hhccHHHH
Q 019330 170 PTFHS-LRHINLVSLLLSLGYSFLVVGACINAG-FSKNAPPKDYSLESS-KSA-RIFSAFTSISIIAAIF--GNGILPEI 243 (342)
Q Consensus 170 ~~l~~-l~~~s~~~~~~~~~~~~~~i~~~i~~~-~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~fsf--~~~~~~~i 243 (342)
|-+++ ....+.+=+-..+...++.++++.... -.++ -++-+.++ +.. +......++|-..|+. +-..+.+.
T Consensus 161 ~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G---~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitY 237 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEG---LKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITY 237 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHH---HHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 333443333333333334444444322 1110 01111111 111 1346789999999998 88888888
Q ss_pred hhhcCCccccchhhHHH--------HHHHHHHHHHHHHhhHhhhccCC-C----CchhhhccCCCCCCCCCChhHHHHHH
Q 019330 244 QATLAPPATGKMVKGLL--------MCYSVIFVTFYSAAVSGYWAFGN-E----SNSNILKSLMPDNGPSLAPTSVIGLA 310 (342)
Q Consensus 244 ~~~m~~p~~~~~~~~~~--------~~~~~~~~~y~~~g~~gy~~fg~-~----~~~~il~~~~~~~~~~~~~~~~~~i~ 310 (342)
-+.++|.++ +.+... .+......++-..+..|+-.=+. . +-+++.+.+|- ....-.+-
T Consensus 238 sSYL~k~~~--l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~-------G~~~~~lF 308 (439)
T COG0733 238 SSYLSKKSD--LVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPL-------GTLFGILF 308 (439)
T ss_pred HhhcCcccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCch-------hHHHHHHH
Confidence 888877665 333222 22222333333333333331100 0 01345555551 22233333
Q ss_pred HHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330 311 VVFVLLQLFAIGLVSPQFHSSLQLFQFL 338 (342)
Q Consensus 311 ~~~~~i~l~~s~pl~~~p~~~~~~~~~~ 338 (342)
.++..++-++|--=+..+....++++|-
T Consensus 309 Fl~l~fAalTS~iSmlE~~va~l~~~~~ 336 (439)
T COG0733 309 FLLLLFAALTSAISMLEVLVAALIDKFG 336 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444556666666666666666666554
No 94
>PHA02764 hypothetical protein; Provisional
Probab=70.90 E-value=88 Score=28.92 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=45.1
Q ss_pred eeccCChHHHHHH-HHHhhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHH
Q 019330 24 VLESKGEWWHAGF-HLTTAIVGPTILTLPYVFRGL--GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFREL 100 (342)
Q Consensus 24 ~~~~~~s~~~a~~-~l~~~~iG~GiL~lP~~f~~~--G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l 100 (342)
.+.|..+.+++++ |+.+...|.++ +.|+-+... |.- ....-++.++++.-......+.....|++|. ...|
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGG-dYVY--- 82 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGG-DYAY--- 82 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-eEEE---
Confidence 4577777788877 77777777765 555533222 221 1122222333333333333444444455654 2233
Q ss_pred HHHHhCcchHHHHHHHHHH
Q 019330 101 AADVLGSGWMFYFVIFIQT 119 (342)
Q Consensus 101 ~~~~~G~~~g~~~v~~~~~ 119 (342)
.+++||+.+| .+..+...
T Consensus 83 ISRAFGP~~G-FLvG~a~W 100 (399)
T PHA02764 83 IRTAFSSKFY-TIFGISLW 100 (399)
T ss_pred hHHhhCccHH-HHHHHHHH
Confidence 4566888555 55544443
No 95
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=68.75 E-value=28 Score=35.78 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=65.5
Q ss_pred ccCChHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
.+-|+....+.--+-.+.|.- .+=|-|....+|...+.++.+.+++.+..|+.=+...+..--.+... +|--+.+.
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISRs- 188 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISRS- 188 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEecc-
Confidence 444555544444555555542 24567888888888888888877777777766665555432111122 56655554
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI 139 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 139 (342)
+|+.+| -.+.++..+-.-.....|++..-+.+-.
T Consensus 189 LGPEFG-gAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 189 LGPEFG-GAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred cCcccc-ceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 466666 5555566555555666777766655543
No 96
>PRK00701 manganese transport protein MntH; Reviewed
Probab=62.32 E-value=1.6e+02 Score=28.62 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=29.3
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHh
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~ 141 (342)
+..|+.++-+||++. ++.-+...+.+.+....-+...+.-++.++
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999998544 555455555556666666666665555554
No 97
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=53.42 E-value=14 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhccCCCC
Q 019330 258 GLLMCYSVIFVTFYSAAVSGYWAFGNES 285 (342)
Q Consensus 258 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (342)
+...+..+..++..+.|...|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3455667777778888888899998654
No 98
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=53.04 E-value=17 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhccCCCC
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGYWAFGNES 285 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (342)
|..+...+..+..++..+.|..-|.+||...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4456777778888888888888899999664
No 99
>CHL00020 psbN photosystem II protein N
Probab=50.08 E-value=15 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhccCCCC
Q 019330 257 KGLLMCYSVIFVTFYSAAVSGYWAFGNES 285 (342)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (342)
.+...+..+..++..+.|..-|-+||...
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 34566777777778888888888998664
No 100
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=45.50 E-value=92 Score=24.23 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhhhhchHHHHHHhhChhH-HHHHHHHHHHHHHHHHHHhh
Q 019330 32 WHAGFHLTTAIVGPTILTLPYVFRGLGWGL-GFTCLTVMGFVTFYSYYLMS 81 (342)
Q Consensus 32 ~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~-g~~~l~~~~~~~~~s~~ll~ 81 (342)
++-.-..+...+=++-++||..++++|.+. |...+.+.+-...|...+..
T Consensus 60 ~~d~~~FlT~~~vvSg~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~f 110 (120)
T PF04133_consen 60 CQDFGKFLTGFLVVSGFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIGF 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 556666666777777799999999999995 66666666666666654443
No 101
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=44.58 E-value=62 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHhhChhH-HHHHHHHHH
Q 019330 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGL-GFTCLTVMG 70 (342)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~-g~~~l~~~~ 70 (342)
.+.-....+...+=+|-+++|..++++|.+. |...+...+
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg 105 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTG 105 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcC
Confidence 4556666666777788899999999999996 555555555
No 102
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=41.45 E-value=3.3e+02 Score=26.20 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=36.7
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhh
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS 142 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~ 142 (342)
+.+|..++-++|+++ ++.-+...+....++++-....+--++-++.
T Consensus 78 ~laq~ir~~y~~~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 78 GLAEAIRERYLPGLG-ILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred cHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 688888888999766 7777777777888888888888888887763
No 103
>TIGR00909 2A0306 amino acid transporter.
Probab=34.35 E-value=4.1e+02 Score=25.18 Aligned_cols=47 Identities=13% Similarity=-0.063 Sum_probs=38.2
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhh
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD 143 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 143 (342)
...++.++..|+ ++..++.+...+.+++...+.+...+..+..+.++
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455677776676 77788899999999999999999999988877654
No 104
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=33.29 E-value=1.6e+02 Score=24.47 Aligned_cols=87 Identities=10% Similarity=-0.052 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHH-hcCCCCcchhHHHHHHHHHHH
Q 019330 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVL-SQLPTFHSLRHINLVSLLLSL 187 (342)
Q Consensus 109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl-~~~~~l~~l~~~s~~~~~~~~ 187 (342)
+|..+--+++.+..++++..|-...+..-...... .+....|.+++. +.=|+ -.+|.++.+.+-.++..+|..
T Consensus 68 ~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi-----~YG~~~W~ivF~-~lnP~fp~~~~~~~l~~nTiiT~~Ciy 141 (173)
T PF11085_consen 68 LGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGI-----LYGLAWWAIVFF-VLNPIFPMIKPVTELDWNTIITTLCIY 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHH-HhcccccCChhhhhCchhHHHHHHHHH
Confidence 56555555555666666666665554433222111 122233333332 22233 255667777777777777665
Q ss_pred HHHHHhhhhhhccC
Q 019330 188 GYSFLVVGACINAG 201 (342)
Q Consensus 188 ~~~~~~i~~~i~~~ 201 (342)
..--+.+++++...
T Consensus 142 iLyGlFIGYSIsfE 155 (173)
T PF11085_consen 142 ILYGLFIGYSISFE 155 (173)
T ss_pred HHHHHHhceeehhh
Confidence 55556667776544
No 105
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=32.70 E-value=3.8e+02 Score=25.85 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=50.5
Q ss_pred HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (342)
+..+|. +|.+++.+++.++.|.+.+++.....+++..+++. +.... .+-+++ +++.++.-..+++.++.++=+
T Consensus 300 ~~~~g~-~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~---~~~~~--~~ri~~-i~~~~~G~~~~~~~vW~~~Di 372 (416)
T PF01235_consen 300 STVLGS-WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG---KKAIW--IYRILF-IAMVFIGAVIDLDLVWDLADI 372 (416)
T ss_pred HHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ceEEE--eeeehh-hhhhhhhhcccchhHHHHHHH
Confidence 334576 89999999999999999999999999999998831 11111 111122 222333333466666666666
Q ss_pred HHHHHH
Q 019330 182 SLLLSL 187 (342)
Q Consensus 182 ~~~~~~ 187 (342)
++.++.
T Consensus 373 ~~~lma 378 (416)
T PF01235_consen 373 ANGLMA 378 (416)
T ss_pred HHHHHH
Confidence 655443
No 106
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=32.24 E-value=52 Score=22.23 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=18.6
Q ss_pred hhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 245 ATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
.--++|+++.+.+....+ .+-.+++|+.||..
T Consensus 18 k~~~KPd~~Ef~~iak~t----~iG~~i~G~IGf~I 49 (61)
T TIGR00327 18 AVCKKPDLEEYLKVAKVT----GIGIIIVGIIGYII 49 (61)
T ss_pred HHhcCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 344578776566544433 34456677777764
No 107
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=29.82 E-value=1.1e+02 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHH-HHHHHHHhhHhhhccCCCC
Q 019330 226 TSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVI-FVTFYSAAVSGYWAFGNES 285 (342)
Q Consensus 226 ~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~-~~~y~~~g~~gy~~fg~~~ 285 (342)
.++...+-++ ..++.+..++++|+|.=..... +...+ +++|.++|+.+|+++-.+.
T Consensus 15 ~~~~~a~gs~~~~~~~~~wy~~L~kP~w~pp~~----~f~~vWtvLy~l~~iSa~lvW~~~~ 72 (161)
T COG3476 15 VALAVALGSFFISSRDPNWYNNLKKPFWLPPEW----AFPPVWTVLYALIGISAYLVWEKGP 72 (161)
T ss_pred HHHHHHHHHHHhccccHHHHHhccCCCCCChHH----HhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444456 7788888999999987543322 22333 6789999999999885554
No 108
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.16 E-value=2.6e+02 Score=21.39 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=37.1
Q ss_pred chhhhcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccc
Q 019330 9 PFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD 85 (342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~ 85 (342)
+|+++..+.|. +..+.=|.-.-.....-+....-++++|.+.-..+|......+++..++. .++...+.+..+
T Consensus 2 ~fLp~RLN~eP----vV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKR 75 (111)
T TIGR03750 2 QFLPDRLNREP----VVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKR 75 (111)
T ss_pred CCCchhhcCCC----ceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc
Confidence 34554445443 22333332333333333333335678887666667887666555544444 445555666544
No 109
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=28.79 E-value=2.3e+02 Score=20.59 Aligned_cols=59 Identities=2% Similarity=-0.079 Sum_probs=35.2
Q ss_pred HHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhccCCCCch
Q 019330 226 TSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNS 287 (342)
Q Consensus 226 ~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~ 287 (342)
-..|++...- |.....+..++-.+|.++. +|++.+..++.. .-+..|++.|-.|| ...+
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~~~~~-wRalSii~FIlG-~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNVTDYV-WRALSVTCFIVG-AVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCcchh-HHHHHHHHHHHH-HHHHHHHHHHHHhc-ccCC
Confidence 3446666665 7777777666555677753 455444333332 24566788888888 5433
No 110
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=28.21 E-value=5.7e+02 Score=24.94 Aligned_cols=25 Identities=12% Similarity=-0.177 Sum_probs=17.2
Q ss_pred cCChHHHHHHHHHhhhhhhhhchHH
Q 019330 27 SKGEWWHAGFHLTTAIVGPTILTLP 51 (342)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~lP 51 (342)
|+=|.++=...++++-+|+|++.-.
T Consensus 35 PefS~~sW~aMlf~aG~G~gllfwg 59 (453)
T TIGR00842 35 PEFSTLSWLAMLFAAGMGIGLMFWG 59 (453)
T ss_pred CCCcchHHHHHHHHHhhhhhhhhhH
Confidence 3334455567788899999988654
No 111
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=27.11 E-value=4e+02 Score=26.90 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=109.5
Q ss_pred hHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccc-cCcccccHHHHHHHHhCc
Q 019330 30 EWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAADVLGS 107 (342)
Q Consensus 30 s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~-~~~~~~sy~~l~~~~~G~ 107 (342)
.|+-....+..+.+|. -++++|....+.|.-........ .... +..++-..|. .+.+..+..|--++-||+
T Consensus 48 ~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~-----l~~~--~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~ 120 (585)
T KOG2349|consen 48 VWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNA-----LLSV--LLLGWIFIPVFYRLGVTTMYEYLEKRFGG 120 (585)
T ss_pred eEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHH-----HHHH--HhhheEEEEEEEecCeeehhHHHHHHhcc
Confidence 3444444555555554 67888887777766532222111 1111 1222222111 011123566667777888
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330 108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL 187 (342)
Q Consensus 108 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (342)
+ .|.+..+...+..+--...++..-+-.+++.... +...-..+..++...-....-+++.-|+=.+-...++
T Consensus 121 ~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~-------~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml 192 (585)
T KOG2349|consen 121 R-VRYLATLSFILMIFLYLPVDMYAPALAINQVTGI-------NLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVIML 192 (585)
T ss_pred c-chhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc-------CceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHH
Confidence 4 6666655555544444433333334444444321 1111112233444444555567777777666666555
Q ss_pred HHHHHhhhhhhcc-C-----cCCCCCCC------CccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcccc
Q 019330 188 GYSFLVVGACINA-G-----FSKNAPPK------DYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPATG 253 (342)
Q Consensus 188 ~~~~~~i~~~i~~-~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~~ 253 (342)
.....+.+.+..+ + .+...... +....++.-..+|..+.+-.+...++ .+.+. +|+-|.-|+.|
T Consensus 193 ~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~--VQR~lsl~slk 270 (585)
T KOG2349|consen 193 GGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI--VQRYLSLPSLK 270 (585)
T ss_pred HHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--HhHHhccccHH
Confidence 5554444433221 1 11100000 11111111122455554444444454 44444 47777767766
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHhhhcc
Q 019330 254 KMVKGLLMCYSVIFVTFYSAAVSGYWAF 281 (342)
Q Consensus 254 ~~~~~~~~~~~~~~~~y~~~g~~gy~~f 281 (342)
+-++.........++......+.|...|
T Consensus 271 ~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 271 HAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 6666666666555555555555555544
No 112
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=26.90 E-value=3.1e+02 Score=21.37 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=37.3
Q ss_pred CchhhhcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChh-HHHHHHHHHHHHHH-HHHHHhhhcc
Q 019330 8 DPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG-LGFTCLTVMGFVTF-YSYYLMSKVL 84 (342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~-~g~~~l~~~~~~~~-~s~~ll~~~~ 84 (342)
-+|+++..+.|. +..+.-|.-.-.....-+.+-.-++++|.++- .||+ .+..++++..++.. .+...+.+..
T Consensus 4 i~fLp~RLN~eP----vV~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlK 77 (121)
T PF11990_consen 4 IEFLPDRLNREP----VVFRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLK 77 (121)
T ss_pred cccchhhhcCCC----CeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346666666544 23333343333333333333336789999886 7777 45555555444444 3444455543
No 113
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.80 E-value=3.8e+02 Score=23.16 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=58.2
Q ss_pred HhhHHHHHHHHHHHHhhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCC
Q 019330 221 IFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300 (342)
Q Consensus 221 ~~~~~~~~~i~~fsf~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~ 300 (342)
+..++-..|.+.+. ++..+ +++..+.++ |+..|.+....-...++...+|+..-..+-++.++.+ .|+.+
T Consensus 26 ~HP~lM~~Gfi~l~-geAiL--vyr~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~-~hfyS----- 95 (214)
T cd08764 26 WHPLLMVLGLIFLY-GNSIL--VYRVFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPI-PNMYS----- 95 (214)
T ss_pred ecHHHHHHHHHHHH-HHHHH--HhccCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-Ccccc-----
Confidence 34555444443332 33322 244444433 3346778888888887778888655444444443333 33331
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhcchhh
Q 019330 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQFH 329 (342)
Q Consensus 301 ~~~~~~~~i~~~~~~i~l~~s~pl~~~p~ 329 (342)
-.+|+-.....+..+..+..+....+|-
T Consensus 96 -lHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 96 -LHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888888888888887777774
No 114
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.46 E-value=95 Score=20.97 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=18.3
Q ss_pred hhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 245 ATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
+--++|+++.+.++...+. +-.+++|+.||..
T Consensus 22 ~~~~KPd~~Ef~~ia~~~~----iG~~i~G~iGf~I 53 (61)
T PRK09400 22 KVARKPTREEFLLVAKVTG----LGILLIGLIGFII 53 (61)
T ss_pred HHhcCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3445787765665544333 4455667766653
No 115
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.67 E-value=6.9e+02 Score=25.02 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=35.9
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhh
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD 143 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 143 (342)
-..++-....||| +........++..+..+++-++..+...-..-.+
T Consensus 326 p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 4667777778997 5577788888888888888888888877766543
No 116
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=25.09 E-value=1.2e+02 Score=19.78 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=12.1
Q ss_pred HHHHhhhcCC---ccccchhhH
Q 019330 240 LPEIQATLAP---PATGKMVKG 258 (342)
Q Consensus 240 ~~~i~~~m~~---p~~~~~~~~ 258 (342)
+-++.+|||+ |+++...+.
T Consensus 5 ~~~~~~ElkkV~WPt~~e~~~~ 26 (55)
T TIGR00964 5 FKEVKAELKKVVWPSRKELITY 26 (55)
T ss_pred HHHHHHHHhcCcCcCHHHHHhH
Confidence 3467889987 776544433
No 117
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=24.45 E-value=1.8e+02 Score=23.32 Aligned_cols=51 Identities=10% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhccCCC
Q 019330 231 IAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNE 284 (342)
Q Consensus 231 ~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~ 284 (342)
...++ ......+.++++|+|.=.+-. -..+ .+=.++|.++|..+|..+.+.
T Consensus 12 ~~~~~~~~~~~~~wy~~L~kP~~~Pp~--~~f~-~vW~~ly~l~g~a~~~v~~~~ 63 (148)
T PF03073_consen 12 FLSGYLTPTDVSEWYDSLKKPSWTPPG--WVFG-PVWTILYILMGIASYLVWRKG 63 (148)
T ss_pred HHHHHHcCCcchHHHhhccCCCCCCcc--cHHH-HHHHHHHHHHHHHHHhhHhcc
Confidence 33344 444447778888877643211 1111 123457788888888877543
No 118
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.90 E-value=7.4e+02 Score=24.40 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-CC-----CCch-HH-HHHHHHHHHHHHHhcC
Q 019330 98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PN-----GSLK-LY-EFIAMVTVVMIVLSQL 169 (342)
Q Consensus 98 ~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~-----~~~~-~~-~~~~i~~~i~~pl~~~ 169 (342)
.+-+++.+|. +. |++-+...+.++|..-+.+...+..+....+.-| |+ +..+ .. .-++..+++.+-+.+.
T Consensus 276 v~Fa~~~~G~-~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~ 353 (479)
T KOG1287|consen 276 VTFADRILGV-FA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLI 353 (479)
T ss_pred HHHHHHhccc-hH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 3567788888 77 9999999999999988888888777776655411 21 1111 22 2233344555566666
Q ss_pred CCCcc
Q 019330 170 PTFHS 174 (342)
Q Consensus 170 ~~l~~ 174 (342)
.++.+
T Consensus 354 ~d~~~ 358 (479)
T KOG1287|consen 354 GDFDQ 358 (479)
T ss_pred hhHHH
Confidence 65554
No 119
>PTZ00478 Sec superfamily; Provisional
Probab=22.56 E-value=1.1e+02 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=20.2
Q ss_pred hhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 244 QATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 244 ~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
.+.-++|+++.+.++... +.+=++++|+.||..
T Consensus 34 vkrctKPdrkEf~kiaka----t~iGf~imG~IGy~I 66 (81)
T PTZ00478 34 IRKCTKPDAKEYTNIAYA----CSVGFFIMGFIGYSI 66 (81)
T ss_pred HHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 445567887666654433 234456778888864
No 120
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=22.55 E-value=4.6e+02 Score=26.13 Aligned_cols=44 Identities=11% Similarity=-0.104 Sum_probs=24.1
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHh
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~ 141 (342)
-|+-++++.-|+ +| ..+|++-.+...+....-+-+....++.-.
T Consensus 176 l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl 219 (537)
T COG1292 176 LYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGL 219 (537)
T ss_pred hhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 366677775577 78 456655555444444444444444444433
Done!