Query 019330
Match_columns 342
No_of_seqs 121 out of 1184
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 14:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.4 2.5E-11 8.5E-16 115.6 20.4 245 26-284 7-253 (445)
2 3gia_A Uncharacterized protein 99.2 2.3E-09 8E-14 101.9 21.4 241 26-282 5-248 (444)
3 4djk_A Probable glutamate/gamm 98.9 2E-07 6.9E-12 90.1 20.8 245 25-284 9-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.6 7E-06 2.4E-10 79.2 22.2 273 1-292 1-289 (501)
5 3dh4_A Sodium/glucose cotransp 96.2 0.95 3.2E-05 43.5 23.0 159 18-190 11-171 (530)
6 2xq2_A Sodium/glucose cotransp 94.8 3.3 0.00011 40.3 22.3 153 22-188 44-198 (593)
7 2a65_A Leutaa, Na(+):neurotran 93.2 6.1 0.00021 37.7 23.4 216 29-252 9-274 (519)
8 3gia_A Uncharacterized protein 49.6 1.1E+02 0.0039 27.6 10.5 47 96-143 259-305 (444)
9 3mp7_B Preprotein translocase 29.4 63 0.0021 20.9 3.6 32 244-279 19-50 (61)
10 2wsw_A BCCT family betaine/car 28.0 3.9E+02 0.013 25.2 15.7 91 95-189 179-274 (509)
11 2ww9_B Protein transport prote 23.6 57 0.002 22.4 2.7 34 243-280 35-68 (80)
12 1rh5_B Preprotein translocase 23.1 51 0.0017 22.3 2.3 32 245-280 24-55 (74)
13 4ain_A Glycine betaine transpo 22.6 5E+02 0.017 24.6 11.4 25 26-50 93-117 (539)
14 3bo0_B Preprotein translocase 22.1 75 0.0026 20.5 3.0 11 242-252 12-25 (65)
15 2zjs_E Preprotein translocase 21.0 93 0.0032 19.8 3.2 17 241-257 10-29 (60)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.39 E-value=2.5e-11 Score=115.64 Aligned_cols=245 Identities=12% Similarity=-0.008 Sum_probs=156.8
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (342)
+|+-+.++.....+++++|+|++.+|....+.|.. +.+..++.++........+.|...+.|+.+ +..+..++.+
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~~ 81 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPG----GSYAYARRCF 81 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTT----THHHHHHHHS
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CchhhHHhHc
Confidence 56668899999999999999999999998888864 777777788888888888888776654332 5666788999
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA-MVTVVMIVLSQLPTFHSLRHINLVSLL 184 (342)
Q Consensus 106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (342)
||.+| +++.+...+........+....++.++..++... .....+.+ +..++.+-....+..+....++.+...
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99666 7777777777777777777777776665544211 11111211 111222222223345555555544444
Q ss_pred HHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHH
Q 019330 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCY 263 (342)
Q Consensus 185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 263 (342)
..+...+++++..+.....++. .. ...+.....+..+..++....|+| +........+|+|+|+| +.+|++..+.
T Consensus 157 ~~i~~~~~~~i~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~ 232 (445)
T 3l1l_A 157 LALIPIVGIAVFGWFWFRGETY-MA--AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGV 232 (445)
T ss_dssp HHHHHHHHHHHTTSTTCCCCCC-CC--C-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhc-cc--ccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-cccHHHHHHH
Confidence 3333322222222222211110 01 111111112457889999999999 99999999999999975 5899999999
Q ss_pred HHHHHHHHHHhhHhhhccCCC
Q 019330 264 SVIFVTFYSAAVSGYWAFGNE 284 (342)
Q Consensus 264 ~~~~~~y~~~g~~gy~~fg~~ 284 (342)
.++.++|+...+......+.+
T Consensus 233 ~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 233 LIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH
Confidence 999999999888766666543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.18 E-value=2.3e-09 Score=101.94 Aligned_cols=241 Identities=9% Similarity=0.038 Sum_probs=153.2
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~ 104 (342)
+|+-+.++.....+++++|+|++..|.. .+..|. .+.+..++.+++.......+.|...+.|+.+ ...+..++.
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G----g~y~~~~~~ 79 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA----GPIAFIHKA 79 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT----THHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----cHHHhHHHH
Confidence 5666889999999999999999998754 455565 5777777778888888888888877654433 466778888
Q ss_pred hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHH-HHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYE-FIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (342)
Q Consensus 105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (342)
+|+++....+.+...+........+....++.+..+++. ....... ...+..++.+-....+..+....++.+..
T Consensus 80 ~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (444)
T 3gia_A 80 IGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIV 155 (444)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999631123345555556666777777777877776542 1111111 11111122222223334555555554444
Q ss_pred HHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC 262 (342)
Q Consensus 184 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (342)
...+...++.++..+.....+ +... ...+..+.+++.++....++| +........+|+|+|+| +.+|++..+
T Consensus 156 ~~~i~~~~~~ii~~~~~~~~~-----~~~~-~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~ 228 (444)
T 3gia_A 156 LVKLLILGLFIFAGLITIHPS-----YVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK-NVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCGG-----GTSC-CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChh-----hcCC-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc-chhHHHHHH
Confidence 433333322222222222111 1111 112234557888899999999 99999999999999975 589999999
Q ss_pred HHHHHHHHHHHhhHhhhccC
Q 019330 263 YSVIFVTFYSAAVSGYWAFG 282 (342)
Q Consensus 263 ~~~~~~~y~~~g~~gy~~fg 282 (342)
..++.++|....+......+
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 99999999988776655544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.87 E-value=2e-07 Score=90.13 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=137.5
Q ss_pred eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccc--cccccCcccccHHHHH
Q 019330 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD--HCEKAGRRHIRFRELA 101 (342)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~--~~~~~~~~~~sy~~l~ 101 (342)
.+|+=+.++.....++.++| +.++|. ....|.. +++..++.+++. ......+.|... ..| ++ .....+
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----G~y~~~ 79 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----GVFAWV 79 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------CHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----ChhhhH
Confidence 46677889999999999986 567776 4566654 333333333333 235666677766 554 33 566778
Q ss_pred HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHh--hhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY--SDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (342)
Q Consensus 102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~--~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (342)
++.+|+++| +++.+...+.......++....++.++.++ +.+. ...+......++..++..- ...+..+....+.
T Consensus 80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~-in~~g~~~~~~~~ 156 (511)
T 4djk_A 80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN-EDPITKTIAALIILWALAL-TQFGGTKYTARIA 156 (511)
T ss_dssp HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT-SCSSHHHHHHHHHHHHHHH-HHHTCSSSHHHHT
T ss_pred HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCcHHHHHHHHHHHHHHHH-HHHhChHHHHHHH
Confidence 888999766 777777777776666666666666665442 2111 1122222222222222222 2333455555555
Q ss_pred HHHHHHH-HHHHHHhhhhhhccCcCCCCCC--CCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330 180 LVSLLLS-LGYSFLVVGACINAGFSKNAPP--KDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK 254 (342)
Q Consensus 180 ~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~ 254 (342)
.+..... +...++++...+......+... .+. ...+. ....+.+.++...+++| +........+|+|+|+| +
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k-~ 233 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPD--FSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR-D 233 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCC--TTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCC--cccchHHHHHHHHHHHHhhHHHHHHHHHhccCccc-c
Confidence 4443221 1111111111111110001000 000 11111 11123445677889999 99999999999999986 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhccCCC
Q 019330 255 MVKGLLMCYSVIFVTFYSAAVSGYWAFGNE 284 (342)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~ 284 (342)
++|++..+..++.++|++..+......+++
T Consensus 234 ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 899999999999999999888777766654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.60 E-value=7e-06 Score=79.22 Aligned_cols=273 Identities=10% Similarity=-0.003 Sum_probs=146.4
Q ss_pred CC-CCCCCCchhhhcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHh-hChhHHHHHHHHHHHHHHHHHH
Q 019330 1 MA-QPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRG-LGWGLGFTCLTVMGFVTFYSYY 78 (342)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~-~G~~~g~~~l~~~~~~~~~s~~ 78 (342)
|+ +|.++++.++ ++|...++..+|+.++++-+..-+...++.+...+...+.. .++..+++..++..++...-..
T Consensus 1 m~~~~~~~~~~~e---~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~ 77 (501)
T 2jln_A 1 MNSTPIEEARSLL---NPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLF 77 (501)
T ss_dssp -------CCCBCC---CSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccc---cCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 54 3455555443 55555555556777777666666666666666655544433 3445555555554444443333
Q ss_pred HhhhccccccccCcccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH
Q 019330 79 LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM 158 (342)
Q Consensus 79 ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i 158 (342)
++...-.+ . ..++.++.+..||+ +|..+..+...+.++|-...-....++.++.++....+ ......+.++
T Consensus 78 l~~~~G~~---~---Gl~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g--~~~~~v~~~i 148 (501)
T 2jln_A 78 FTQSAAIR---W---GINFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG--FTNLPLWIVI 148 (501)
T ss_dssp HHTHHHHH---H---CCCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHhHHHhh---c---CCChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHH
Confidence 33333221 2 34799999999999 58889999999999999988888999999888653221 1112334556
Q ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhcc-CcC-CCCCCCCccccCcchhhHhhHHHHHHHHHHHH-
Q 019330 159 VTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFS-KNAPPKDYSLESSKSARIFSAFTSISIIAAIF- 235 (342)
Q Consensus 159 ~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf- 235 (342)
+.++.++..+. -.+.++.+..+.....+...+.+.+..+.+ +.+ ... .+ ..+. ...+.+..++...+-.+
T Consensus 149 ~~~l~~~~~~~-G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~--~~--~~~~--~~~~~f~~ai~~~~~~~~ 221 (501)
T 2jln_A 149 FGAIQVVTTFY-GITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEV--MS--MGGE--NPGMPFSTAIMIFVGGWI 221 (501)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH--TT--CCCS--SCCSCHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh--hc--cCCc--cchHHHHHHHHHHHHHHH
Confidence 66777777766 477777777666554433333333322221 110 000 00 0000 11224555554432222
Q ss_pred -hhccHHHHhhhcCCccc---------c-chhhHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhcc
Q 019330 236 -GNGILPEIQATLAPPAT---------G-KMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKS 292 (342)
Q Consensus 236 -~~~~~~~i~~~m~~p~~---------~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~ 292 (342)
...+.++..+.+|++++ + |......++..+..++...+|...-...+...+..++..
T Consensus 222 ~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~ 289 (501)
T 2jln_A 222 AVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITE 289 (501)
T ss_dssp HHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 55788999999987765 1 122223344555555555555543333333333444443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.20 E-value=0.95 Score=43.53 Aligned_cols=159 Identities=9% Similarity=0.083 Sum_probs=85.3
Q ss_pred cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Q 019330 18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR 96 (342)
Q Consensus 18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~s 96 (342)
+.++.+.-.|+-+++...+.+..+.+++ ..+++|....+.|+......... ++........+..-.++ . +..|
T Consensus 11 ~~~dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~---~--~~~T 84 (530)
T 3dh4_A 11 XXXXXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---K--GIYT 84 (530)
T ss_dssp HHHHHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH---T--TCCS
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH---c--CCcc
Confidence 3344445566667777777777776665 78899988888887532211111 11011112223332222 2 2359
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHH-HHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330 97 FRELAADVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (342)
Q Consensus 97 y~~l~~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (342)
.+|.-++-||++ .+.+..+...+ +.+..+.+-+...+..++.++. .+....+++.++++.--+...-++..
T Consensus 85 ~~e~l~~Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 85 IPEFVEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHHHHHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhcchHHH
Confidence 999999999995 45555544332 2222233333444555665543 33344445566666777788888888
Q ss_pred hHHHHHHHHHHHHHH
Q 019330 176 RHINLVSLLLSLGYS 190 (342)
Q Consensus 176 ~~~s~~~~~~~~~~~ 190 (342)
.++..+-.+.++...
T Consensus 157 ~~TD~iQ~~im~~g~ 171 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGG 171 (530)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777766554433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=94.76 E-value=3.3 Score=40.31 Aligned_cols=153 Identities=10% Similarity=0.123 Sum_probs=78.1
Q ss_pred cceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHH
Q 019330 22 AFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFREL 100 (342)
Q Consensus 22 ~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l 100 (342)
.+.-.|+-+++.....+..+.+++ ..++.|....+.|+......... ++........+..-.++ .+ ..|.+|.
T Consensus 44 y~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r---~~--~~T~~e~ 117 (593)
T 2xq2_A 44 YFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KG--IYTIPEF 117 (593)
T ss_dssp -------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH---TT--CCSHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh---CC--CCCcHHH
Confidence 334456667777777777666655 66789988888887422111100 00001111122222222 33 3499999
Q ss_pred HHHHhCcchHHHHHHHHHH-HHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330 101 AADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (342)
Q Consensus 101 ~~~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (342)
-++=||++ .+.+..+... ...+.....-+...+..++.++. ++....+++.++++.-.+...-++...++-
T Consensus 118 l~~Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD 189 (593)
T 2xq2_A 118 VEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAVVWTD 189 (593)
T ss_dssp HHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHTTC---CCHHH
T ss_pred HHHHccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999985 4455544333 22333333334445666666653 233334455566667777777788887777
Q ss_pred HHHHHHHHH
Q 019330 180 LVSLLLSLG 188 (342)
Q Consensus 180 ~~~~~~~~~ 188 (342)
.+-.+..+.
T Consensus 190 ~iQ~iiml~ 198 (593)
T 2xq2_A 190 VIQVFFLVL 198 (593)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=93.18 E-value=6.1 Score=37.72 Aligned_cols=216 Identities=10% Similarity=0.023 Sum_probs=106.3
Q ss_pred ChHHHHHHHHHhhhhhhh-hchHHHHHHhhCh----hHHHHHHHHHHHHHHHHHHHhhhccc-cccccCcccccHHHHHH
Q 019330 29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGW----GLGFTCLTVMGFVTFYSYYLMSKVLD-HCEKAGRRHIRFRELAA 102 (342)
Q Consensus 29 ~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~----~~g~~~l~~~~~~~~~s~~ll~~~~~-~~~~~~~~~~sy~~l~~ 102 (342)
+|..+-.+..+.+.+|.| +--.||...+.|- ++=++.+++.++--.+.=..+.|-.. + .+ + +-.+.-+
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~---~r-~--~~i~a~~ 82 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ---GH-G--TTPAIFY 82 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---TC-C--SHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhc---cC-C--CHHHHHH
Confidence 355777888899999998 8899999998884 34444444444444333333444111 1 11 1 2222333
Q ss_pred HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCC----C------------------------------
Q 019330 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN----G------------------------------ 148 (342)
Q Consensus 103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~------------------------------ 148 (342)
++.+++.. ..+.....+.++..++-|.++.+-.+..++..+..+ +
T Consensus 83 ~l~~~~~~-~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 161 (519)
T 2a65_A 83 LLWRNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPI 161 (519)
T ss_dssp HHSCSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCB
T ss_pred HhcCCcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccc
Confidence 33222111 123344445555566666666665555444332111 0
Q ss_pred -C--chHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHhhhhhhccCcCC--CCCCCCccccCc-ch-hh
Q 019330 149 -S--LKLYEFIAMVTVVMIVLSQLPTF-HSLRHINLVSLLLSLGYSFLVVGACINAGFSK--NAPPKDYSLESS-KS-AR 220 (342)
Q Consensus 149 -~--~~~~~~~~i~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~-~~-~~ 220 (342)
. +....+. +...++.-++..|-+ +....++.+-...-+...++.+++++.-.-++ ....-++-+.++ +. .+
T Consensus 162 g~~~~~~~~~~-~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~ 240 (519)
T 2a65_A 162 LKPSLFAYIVF-LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKD 240 (519)
T ss_dssp CCCCHHHHHHH-HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTC
T ss_pred cCccHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCC
Confidence 0 1111121 222333445666666 45666666655543443344444443311100 000000001110 00 11
Q ss_pred HhhHHHHHHHHHHHH--hhccHHHHhhhcCCccc
Q 019330 221 IFSAFTSISIIAAIF--GNGILPEIQATLAPPAT 252 (342)
Q Consensus 221 ~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~ 252 (342)
......|.+-..||. |...+...-+.+|+.++
T Consensus 241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n 274 (519)
T 2a65_A 241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQD 274 (519)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSC
T ss_pred HHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcC
Confidence 235789999999999 88888887777765554
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=49.58 E-value=1.1e+02 Score=27.60 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=39.0
Q ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhh
Q 019330 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD 143 (342)
Q Consensus 96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 143 (342)
...++.+..+|+ ++..++.+...+..+++..+.+...+..+..+.++
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467788888887 78788888888999999999998888888877654
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=29.39 E-value=63 Score=20.88 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=17.4
Q ss_pred hhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhh
Q 019330 244 QATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYW 279 (342)
Q Consensus 244 ~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~ 279 (342)
.+--++|+++.+.++...+. +-.+++|+.||.
T Consensus 19 lk~~~KPd~~Ef~~iak~~~----iG~~i~G~iGf~ 50 (61)
T 3mp7_B 19 FLVTKKPNWATYKRAAKITG----LGIILIGLIGML 50 (61)
T ss_dssp HHHSCCCCTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33456788766665544333 334455666554
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=28.02 E-value=3.9e+02 Score=25.20 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=46.3
Q ss_pred ccHHHHH-HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhh---hhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC
Q 019330 95 IRFRELA-ADVLGSGWMFYFVIFIQTAINTGVGIGAILLA---GECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP 170 (342)
Q Consensus 95 ~sy~~l~-~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~---~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 170 (342)
.-|+-++ ++.-|+ +|+.+=.+.++.+.+|...+.=... +.-++.++.. ++ .......+++...+++-.|-..
T Consensus 179 ~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi--~~-~~~~qi~ii~vit~~~~~Sa~s 254 (509)
T 2wsw_A 179 TLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGI--PH-TLQLDAIIISCWILLNAICVAF 254 (509)
T ss_dssp GCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 3577788 788787 7864444555556666555433222 2233333321 22 2222222233334445556555
Q ss_pred CC-cchhHHHHHHHHHHHHH
Q 019330 171 TF-HSLRHINLVSLLLSLGY 189 (342)
Q Consensus 171 ~l-~~l~~~s~~~~~~~~~~ 189 (342)
-+ |..|+.|.+.+...+..
T Consensus 255 Gl~kGIk~LS~~N~~la~~L 274 (509)
T 2wsw_A 255 GLQKGVKIASDVRTYLSFLM 274 (509)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56 66677777666554443
No 11
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=23.60 E-value=57 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=19.9
Q ss_pred HhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 243 IQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
+..--++|+++.+.++...+. +-++++|+.||..
T Consensus 35 vlk~~~KPdr~Ef~~iak~t~----iG~~imG~IGfiI 68 (80)
T 2ww9_B 35 FLAKCKKPDLKEYTKIVKAVG----IGFIAVGIIGYAI 68 (80)
T ss_dssp HHHSCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344556788765665544332 4456677777763
No 12
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=23.08 E-value=51 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=17.7
Q ss_pred hhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330 245 ATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA 280 (342)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 280 (342)
.--++|+++.+.++...+. +-.+++|+.||..
T Consensus 24 k~~~KPdr~EF~~iak~~~----iG~~imG~IGfiI 55 (74)
T 1rh5_B 24 LVLKKPTKDEYLAVAKVTA----LGISLLGIIGYII 55 (74)
T ss_dssp HSEECCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3445787765665544333 3445566666654
No 13
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=22.56 E-value=5e+02 Score=24.62 Aligned_cols=25 Identities=8% Similarity=-0.193 Sum_probs=18.6
Q ss_pred ccCChHHHHHHHHHhhhhhhhhchH
Q 019330 26 ESKGEWWHAGFHLTTAIVGPTILTL 50 (342)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~l 50 (342)
+|.=|.++=+..++++-+|.|++--
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~Fw 117 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFY 117 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHH
T ss_pred CCCCcchHHHHHHHHHhhcchheee
Confidence 4455556667888999999998843
No 14
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=22.07 E-value=75 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=6.2
Q ss_pred HHhhhcCC---ccc
Q 019330 242 EIQATLAP---PAT 252 (342)
Q Consensus 242 ~i~~~m~~---p~~ 252 (342)
+..+||++ |++
T Consensus 12 ~~~~E~kkV~wptr 25 (65)
T 3bo0_B 12 EARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHSCTTT
T ss_pred HHHHHHhheeccCC
Confidence 45566663 555
No 15
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=21.02 E-value=93 Score=19.78 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=10.1
Q ss_pred HHHhhhcCC---ccccchhh
Q 019330 241 PEIQATLAP---PATGKMVK 257 (342)
Q Consensus 241 ~~i~~~m~~---p~~~~~~~ 257 (342)
-+..+|||+ |+++...+
T Consensus 10 ~~v~~ElkKV~WPtr~e~~~ 29 (60)
T 2zjs_E 10 QEARAELARVTWPTREQVVE 29 (60)
T ss_dssp --CCCCCCCCCCSCSSSHHH
T ss_pred HHHHHHHhhccCcCHHHHHH
Confidence 356778887 77765443
Done!