Query 019331
Match_columns 342
No_of_seqs 257 out of 1688
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02226 2-oxoglutarate dehydr 100.0 2.4E-55 5.3E-60 439.3 29.3 323 1-342 1-335 (463)
2 COG0508 AceF Pyruvate/2-oxoglu 100.0 4.3E-51 9.3E-56 406.3 26.7 253 89-342 1-277 (404)
3 PRK05704 dihydrolipoamide succ 100.0 1.1E-49 2.4E-54 396.5 29.7 254 89-342 1-279 (407)
4 PTZ00144 dihydrolipoamide succ 100.0 2.4E-49 5.1E-54 393.4 29.3 245 85-342 39-290 (418)
5 TIGR01347 sucB 2-oxoglutarate 100.0 3.1E-49 6.7E-54 392.7 29.5 251 91-342 1-275 (403)
6 PLN02744 dihydrolipoyllysine-r 100.0 3.1E-49 6.6E-54 402.5 26.9 264 79-342 99-410 (539)
7 KOG0559 Dihydrolipoamide succi 100.0 8.3E-50 1.8E-54 379.2 17.6 249 90-342 72-329 (457)
8 TIGR02927 SucB_Actino 2-oxoglu 100.0 1.1E-48 2.4E-53 405.4 24.8 255 88-342 133-456 (590)
9 KOG0558 Dihydrolipoamide trans 100.0 2.4E-49 5.1E-54 374.6 14.8 285 46-342 26-344 (474)
10 TIGR01348 PDHac_trf_long pyruv 100.0 5.8E-46 1.3E-50 382.2 25.5 251 90-342 116-420 (546)
11 PLN02528 2-oxoisovalerate dehy 100.0 5.3E-45 1.1E-49 364.1 26.7 248 93-342 1-286 (416)
12 KOG0557 Dihydrolipoamide acety 100.0 9.5E-46 2.1E-50 362.8 20.7 253 87-342 35-341 (470)
13 TIGR01349 PDHac_trf_mito pyruv 100.0 7.2E-45 1.6E-49 365.0 26.3 248 93-342 2-306 (435)
14 PRK11854 aceF pyruvate dehydro 100.0 2E-43 4.3E-48 369.2 27.2 253 88-342 204-507 (633)
15 PRK11855 dihydrolipoamide acet 100.0 1.6E-42 3.4E-47 357.4 24.6 253 88-342 117-421 (547)
16 PRK11856 branched-chain alpha- 100.0 1.4E-40 3.1E-45 332.3 28.2 248 90-342 2-284 (411)
17 PRK14843 dihydrolipoamide acet 99.9 1E-26 2.2E-31 227.5 16.3 102 241-342 118-221 (347)
18 PRK11857 dihydrolipoamide acet 99.9 1.8E-25 3.8E-30 215.4 12.6 102 241-342 76-179 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 99.9 5E-25 1.1E-29 204.7 12.9 102 240-342 3-105 (231)
20 PRK12270 kgd alpha-ketoglutara 99.9 1.6E-20 3.5E-25 198.1 17.7 101 240-341 114-218 (1228)
21 PF00364 Biotin_lipoyl: Biotin 99.8 5E-20 1.1E-24 142.1 8.2 74 91-164 1-74 (74)
22 PRK14875 acetoin dehydrogenase 99.8 7.5E-19 1.6E-23 170.2 11.8 79 90-168 2-80 (371)
23 PRK11892 pyruvate dehydrogenas 99.8 3.9E-17 8.4E-22 165.6 19.2 82 90-171 2-84 (464)
24 PRK06748 hypothetical protein; 99.7 7.9E-18 1.7E-22 132.3 9.8 63 104-166 12-75 (83)
25 PRK05889 putative acetyl-CoA c 99.6 2.5E-15 5.4E-20 114.8 9.4 63 103-165 9-71 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.6 4.9E-15 1.1E-19 113.1 9.6 72 93-164 2-73 (73)
27 TIGR02927 SucB_Actino 2-oxoglu 99.6 3E-15 6.4E-20 156.2 11.0 78 90-167 2-79 (590)
28 PRK11854 aceF pyruvate dehydro 99.6 4.4E-15 9.6E-20 156.1 11.3 76 90-167 2-77 (633)
29 PRK08225 acetyl-CoA carboxylas 99.5 5.2E-14 1.1E-18 107.0 9.1 62 104-165 9-70 (70)
30 PRK11855 dihydrolipoamide acet 99.5 1.3E-13 2.8E-18 143.0 10.9 78 90-168 2-79 (547)
31 COG0511 AccB Biotin carboxyl c 99.5 1.6E-13 3.5E-18 118.4 8.2 62 104-165 78-139 (140)
32 TIGR01348 PDHac_trf_long pyruv 99.4 3.7E-13 8E-18 139.4 10.3 75 92-167 2-76 (546)
33 PRK06549 acetyl-CoA carboxylas 99.4 6.3E-13 1.4E-17 113.2 9.2 62 103-164 68-129 (130)
34 PRK07051 hypothetical protein; 99.4 2.4E-12 5.1E-17 100.7 9.9 69 91-165 4-79 (80)
35 PRK05641 putative acetyl-CoA c 99.4 1.6E-12 3.4E-17 113.8 8.9 63 103-165 91-153 (153)
36 cd06850 biotinyl_domain The bi 99.4 5.3E-12 1.1E-16 93.6 9.0 62 103-164 6-67 (67)
37 PLN02983 biotin carboxyl carri 99.3 4.9E-12 1.1E-16 118.2 8.6 61 105-165 206-273 (274)
38 cd06849 lipoyl_domain Lipoyl d 99.3 3.7E-11 8E-16 88.6 10.8 73 92-164 2-74 (74)
39 TIGR00531 BCCP acetyl-CoA carb 99.3 1.4E-11 3E-16 108.3 8.4 62 104-165 88-156 (156)
40 PRK14042 pyruvate carboxylase 99.2 2.9E-11 6.3E-16 126.0 9.7 63 104-166 533-595 (596)
41 PRK06302 acetyl-CoA carboxylas 99.2 3.2E-11 7E-16 105.8 8.5 61 105-165 88-155 (155)
42 TIGR02712 urea_carbox urea car 99.1 9.6E-11 2.1E-15 130.9 9.4 62 104-165 1140-1201(1201)
43 TIGR01108 oadA oxaloacetate de 99.1 2.2E-10 4.8E-15 119.5 7.9 58 104-161 525-582 (582)
44 PRK14040 oxaloacetate decarbox 99.1 4.5E-10 9.7E-15 117.4 9.3 62 104-165 532-593 (593)
45 TIGR01235 pyruv_carbox pyruvat 99.0 5E-10 1.1E-14 124.4 9.0 62 104-165 1082-1143(1143)
46 PRK09282 pyruvate carboxylase 98.9 3.5E-09 7.6E-14 110.8 10.4 63 103-165 529-591 (592)
47 PRK12999 pyruvate carboxylase; 98.8 8.7E-09 1.9E-13 114.9 9.2 62 104-165 1084-1145(1146)
48 COG4770 Acetyl/propionyl-CoA c 98.8 2E-08 4.4E-13 102.2 8.2 61 105-165 584-644 (645)
49 COG1038 PycA Pyruvate carboxyl 98.5 1.5E-07 3.3E-12 98.9 5.9 61 105-165 1088-1148(1149)
50 cd06848 GCS_H Glycine cleavage 98.5 3.2E-07 6.9E-12 74.1 5.8 64 90-154 15-79 (96)
51 KOG0369 Pyruvate carboxylase [ 98.3 9.7E-07 2.1E-11 91.5 6.4 62 104-165 1114-1175(1176)
52 TIGR03077 not_gcvH glycine cle 98.1 4.3E-06 9.2E-11 69.4 5.2 41 113-153 39-79 (110)
53 KOG0238 3-Methylcrotonyl-CoA c 98.0 5.9E-06 1.3E-10 83.6 5.2 61 105-165 610-670 (670)
54 PRK00624 glycine cleavage syst 98.0 1.2E-05 2.6E-10 67.2 5.8 36 113-148 41-76 (114)
55 KOG0368 Acetyl-CoA carboxylase 98.0 1E-05 2.2E-10 89.7 6.8 66 103-169 692-757 (2196)
56 TIGR00998 8a0101 efflux pump m 98.0 2.1E-05 4.5E-10 76.2 8.1 36 134-169 205-240 (334)
57 PRK09783 copper/silver efflux 98.0 3E-05 6.5E-10 78.1 9.5 67 103-169 130-245 (409)
58 TIGR01730 RND_mfp RND family e 97.9 2E-05 4.2E-10 75.4 7.1 67 103-169 33-170 (322)
59 PRK10559 p-hydroxybenzoic acid 97.9 4.2E-05 9.2E-10 74.2 8.4 67 103-169 54-190 (310)
60 PRK13380 glycine cleavage syst 97.8 2.3E-05 4.9E-10 68.2 5.1 62 91-153 31-93 (144)
61 PRK10476 multidrug resistance 97.8 5.1E-05 1.1E-09 74.3 7.6 36 134-169 209-244 (346)
62 PRK01202 glycine cleavage syst 97.7 0.00011 2.5E-09 62.4 7.0 56 113-168 46-108 (127)
63 PRK15136 multidrug efflux syst 97.7 0.00014 3E-09 72.8 8.1 36 134-169 216-251 (390)
64 PRK09578 periplasmic multidrug 97.6 0.00012 2.6E-09 72.8 7.5 66 103-168 70-208 (385)
65 PRK03598 putative efflux pump 97.6 0.00011 2.4E-09 71.5 6.7 36 134-169 204-239 (331)
66 PF13533 Biotin_lipoyl_2: Biot 97.6 0.00013 2.9E-09 51.9 4.8 30 103-132 9-38 (50)
67 PRK12784 hypothetical protein; 97.5 0.00048 1E-08 53.2 7.7 65 103-167 12-77 (84)
68 PRK09859 multidrug efflux syst 97.5 0.00024 5.3E-09 70.7 7.8 66 103-168 68-206 (385)
69 PRK15030 multidrug efflux syst 97.5 0.00028 6.2E-09 70.6 8.0 66 103-168 72-210 (397)
70 PF13533 Biotin_lipoyl_2: Biot 97.5 0.00017 3.7E-09 51.3 4.4 36 133-168 2-37 (50)
71 TIGR00527 gcvH glycine cleavag 97.4 0.00019 4.1E-09 61.1 4.7 42 112-153 44-85 (127)
72 PRK11556 multidrug efflux syst 97.4 0.00034 7.4E-09 70.6 7.1 65 103-167 94-231 (415)
73 PRK11578 macrolide transporter 97.4 0.00045 9.8E-09 68.3 7.5 66 103-168 68-221 (370)
74 PF12700 HlyD_2: HlyD family s 97.4 0.00022 4.7E-09 68.3 4.8 65 103-168 28-194 (328)
75 TIGR02971 heterocyst_DevB ABC 97.2 0.00089 1.9E-08 64.9 7.0 34 135-169 206-239 (327)
76 PF00302 CAT: Chloramphenicol 97.2 0.0023 5E-08 58.8 9.2 68 263-340 24-92 (206)
77 PF01597 GCV_H: Glycine cleava 97.1 0.00096 2.1E-08 56.3 5.7 38 113-150 40-77 (122)
78 TIGR03309 matur_yqeB selenium- 97.0 0.0024 5.2E-08 60.3 7.5 60 104-169 172-231 (256)
79 COG0509 GcvH Glycine cleavage 96.7 0.0018 3.9E-08 55.2 4.1 37 112-148 47-83 (131)
80 PRK05889 putative acetyl-CoA c 96.7 0.0034 7.4E-08 47.6 5.1 34 135-168 4-37 (71)
81 TIGR00999 8a0102 Membrane Fusi 96.5 0.0066 1.4E-07 56.6 6.5 36 134-169 89-124 (265)
82 TIGR01843 type_I_hlyD type I s 96.4 0.01 2.3E-07 58.8 8.1 33 135-167 273-306 (423)
83 PRK13757 chloramphenicol acety 96.1 0.018 4E-07 53.4 7.5 66 265-340 31-96 (219)
84 PRK06748 hypothetical protein; 96.1 0.01 2.3E-07 46.8 4.9 32 135-166 6-37 (83)
85 cd06253 M14_ASTE_ASPA_like_3 A 96.1 0.019 4.2E-07 55.5 7.8 58 105-164 237-297 (298)
86 COG0511 AccB Biotin carboxyl c 96.0 0.01 2.2E-07 51.3 4.8 35 132-166 69-103 (140)
87 PF13375 RnfC_N: RnfC Barrel s 95.9 0.013 2.7E-07 48.0 4.7 45 103-148 37-81 (101)
88 cd06850 biotinyl_domain The bi 95.9 0.015 3.2E-07 42.4 4.7 33 135-167 1-33 (67)
89 cd06250 M14_PaAOTO_like An unc 95.8 0.026 5.6E-07 56.1 7.5 59 104-164 296-358 (359)
90 PRK08225 acetyl-CoA carboxylas 95.7 0.022 4.8E-07 42.8 5.1 34 135-168 3-36 (70)
91 cd06251 M14_ASTE_ASPA_like_1 A 95.6 0.042 9E-07 52.8 7.8 58 105-164 227-286 (287)
92 COG1566 EmrA Multidrug resista 95.6 0.039 8.5E-07 54.7 7.7 36 134-169 209-244 (352)
93 cd06252 M14_ASTE_ASPA_like_2 A 95.5 0.055 1.2E-06 52.7 8.1 59 105-165 252-314 (316)
94 PF05896 NQRA: Na(+)-transloca 95.4 0.02 4.4E-07 54.2 4.8 51 94-151 31-83 (257)
95 PRK07051 hypothetical protein; 95.3 0.041 8.9E-07 42.7 5.3 26 103-128 54-79 (80)
96 TIGR02994 ectoine_eutE ectoine 95.2 0.062 1.3E-06 52.7 7.4 58 105-164 263-324 (325)
97 PF13437 HlyD_3: HlyD family s 94.9 0.046 9.9E-07 43.9 4.9 34 135-168 1-34 (105)
98 PRK06549 acetyl-CoA carboxylas 94.7 0.058 1.2E-06 46.2 5.1 35 133-167 61-95 (130)
99 COG3608 Predicted deacylase [G 94.7 0.058 1.3E-06 52.9 5.8 62 103-166 262-326 (331)
100 cd06254 M14_ASTE_ASPA_like_4 A 94.5 0.085 1.8E-06 50.7 6.3 55 105-161 231-287 (288)
101 PF00364 Biotin_lipoyl: Biotin 94.2 0.076 1.6E-06 40.5 4.3 35 135-169 2-42 (74)
102 TIGR01235 pyruv_carbox pyruvat 94.2 0.17 3.6E-06 57.5 8.6 80 87-167 1019-1108(1143)
103 PF00529 HlyD: HlyD family sec 94.2 0.044 9.5E-07 51.8 3.5 35 134-168 2-36 (305)
104 PRK10476 multidrug resistance 94.0 0.092 2E-06 51.4 5.6 40 126-167 43-82 (346)
105 PRK05641 putative acetyl-CoA c 93.9 0.1 2.2E-06 45.8 5.0 35 133-167 84-118 (153)
106 TIGR00998 8a0101 efflux pump m 93.7 0.079 1.7E-06 51.3 4.4 36 133-168 42-77 (334)
107 TIGR02971 heterocyst_DevB ABC 93.5 0.12 2.6E-06 50.0 5.2 43 126-168 6-51 (327)
108 PF00529 HlyD: HlyD family sec 93.3 0.062 1.3E-06 50.8 2.9 28 103-130 8-35 (305)
109 PF13437 HlyD_3: HlyD family s 93.0 0.26 5.6E-06 39.4 5.7 28 103-130 6-33 (105)
110 PRK11556 multidrug efflux syst 92.8 0.23 5E-06 50.2 6.3 62 106-168 61-122 (415)
111 PF09891 DUF2118: Uncharacteri 92.7 0.16 3.5E-06 44.4 4.3 46 103-148 87-133 (150)
112 PRK11578 macrolide transporter 92.7 0.28 6.1E-06 48.4 6.6 61 106-167 35-95 (370)
113 PF12700 HlyD_2: HlyD family s 92.4 0.14 3E-06 48.9 3.9 35 132-167 20-54 (328)
114 PRK09859 multidrug efflux syst 92.4 0.28 6.1E-06 48.8 6.2 56 111-167 40-95 (385)
115 TIGR01936 nqrA NADH:ubiquinone 92.4 0.13 2.9E-06 52.6 4.0 45 104-149 37-81 (447)
116 TIGR01730 RND_mfp RND family e 92.3 0.17 3.6E-06 48.2 4.3 35 133-167 26-60 (322)
117 PRK10559 p-hydroxybenzoic acid 92.2 0.16 3.6E-06 49.2 4.2 35 134-168 48-82 (310)
118 TIGR01000 bacteriocin_acc bact 92.2 0.26 5.7E-06 50.3 5.9 42 127-168 53-94 (457)
119 PRK14042 pyruvate carboxylase 92.2 0.59 1.3E-05 49.6 8.5 35 134-168 526-560 (596)
120 TIGR01843 type_I_hlyD type I s 91.9 0.28 6E-06 48.7 5.6 43 126-168 36-78 (423)
121 COG4845 Chloramphenicol O-acet 91.9 0.39 8.4E-06 44.0 5.9 70 262-341 26-95 (219)
122 PRK15136 multidrug efflux syst 91.8 0.19 4.2E-06 50.3 4.2 35 133-167 61-95 (390)
123 PF07831 PYNP_C: Pyrimidine nu 91.8 0.19 4.2E-06 38.8 3.3 26 107-132 33-58 (75)
124 PRK09578 periplasmic multidrug 91.6 0.36 7.7E-06 48.1 5.9 56 111-167 42-97 (385)
125 TIGR03794 NHPM_micro_HlyD NHPM 91.5 0.29 6.3E-06 49.3 5.3 36 133-168 58-93 (421)
126 PRK06302 acetyl-CoA carboxylas 91.5 0.31 6.7E-06 42.8 4.7 26 103-128 130-155 (155)
127 COG1726 NqrA Na+-transporting 91.4 0.22 4.8E-06 49.2 4.0 41 109-152 42-84 (447)
128 PRK03598 putative efflux pump 91.2 0.27 5.9E-06 47.7 4.6 35 133-167 43-77 (331)
129 PRK05352 Na(+)-translocating N 91.2 0.2 4.3E-06 51.4 3.7 45 104-149 38-82 (448)
130 TIGR00531 BCCP acetyl-CoA carb 91.1 0.33 7E-06 42.7 4.5 26 103-128 131-156 (156)
131 PLN02226 2-oxoglutarate dehydr 90.8 0.35 7.6E-06 49.7 5.1 28 103-130 141-168 (463)
132 PRK14875 acetoin dehydrogenase 90.5 0.45 9.8E-06 45.9 5.4 36 90-131 45-80 (371)
133 PLN02983 biotin carboxyl carri 90.3 0.45 9.7E-06 45.4 4.8 26 103-128 248-273 (274)
134 PRK15030 multidrug efflux syst 90.0 0.41 8.9E-06 47.9 4.7 43 125-168 58-100 (397)
135 cd06255 M14_ASTE_ASPA_like_5 A 89.8 1 2.2E-05 43.5 7.0 40 107-146 241-282 (293)
136 TIGR01945 rnfC electron transp 89.7 0.34 7.5E-06 49.3 3.9 43 105-148 40-82 (435)
137 TIGR03794 NHPM_micro_HlyD NHPM 89.2 0.36 7.7E-06 48.7 3.6 28 103-130 65-92 (421)
138 cd06663 Biotinyl_lipoyl_domain 88.9 0.88 1.9E-05 34.0 4.7 33 89-127 41-73 (73)
139 PF02749 QRPTase_N: Quinolinat 88.8 0.4 8.7E-06 37.9 2.9 23 107-129 46-68 (88)
140 PRK09783 copper/silver efflux 88.7 0.9 1.9E-05 45.9 6.1 45 123-167 112-158 (409)
141 PF04952 AstE_AspA: Succinylgl 88.6 1.4 2.9E-05 41.9 6.9 59 105-165 228-290 (292)
142 PRK05035 electron transport co 88.5 0.41 8.9E-06 51.7 3.6 44 104-148 45-88 (695)
143 KOG0559 Dihydrolipoamide succi 88.2 1.9 4.1E-05 42.9 7.6 28 103-130 122-149 (457)
144 KOG3373 Glycine cleavage syste 88.2 0.4 8.7E-06 42.3 2.7 41 113-153 89-129 (172)
145 TIGR01000 bacteriocin_acc bact 87.7 0.49 1.1E-05 48.3 3.5 28 103-130 66-93 (457)
146 COG0845 AcrA Membrane-fusion p 87.5 1.5 3.4E-05 41.4 6.6 35 132-166 65-99 (372)
147 TIGR01108 oadA oxaloacetate de 87.1 0.85 1.8E-05 48.3 4.9 35 134-168 518-552 (582)
148 PTZ00144 dihydrolipoamide succ 86.9 0.99 2.1E-05 45.9 5.1 29 103-131 94-122 (418)
149 PRK09282 pyruvate carboxylase 86.5 2 4.3E-05 45.6 7.3 35 133-167 522-556 (592)
150 cd06849 lipoyl_domain Lipoyl d 86.2 1.6 3.5E-05 30.9 4.7 31 91-127 44-74 (74)
151 PRK14040 oxaloacetate decarbox 85.4 1.2 2.5E-05 47.4 4.9 36 133-168 524-559 (593)
152 COG0845 AcrA Membrane-fusion p 85.4 0.78 1.7E-05 43.4 3.3 27 103-129 73-99 (372)
153 COG4072 Uncharacterized protei 84.8 1.9 4.2E-05 37.1 5.0 44 103-146 98-142 (161)
154 COG4770 Acetyl/propionyl-CoA c 84.6 1.2 2.7E-05 46.6 4.4 34 133-166 575-608 (645)
155 PRK05704 dihydrolipoamide succ 84.4 1.7 3.8E-05 44.0 5.4 29 103-131 52-80 (407)
156 TIGR01347 sucB 2-oxoglutarate 83.0 1.5 3.3E-05 44.3 4.4 28 103-130 50-77 (403)
157 PRK05305 phosphatidylserine de 82.9 2.7 5.9E-05 38.5 5.6 54 105-163 150-204 (206)
158 PRK12999 pyruvate carboxylase; 82.2 3.3 7.2E-05 47.3 7.1 34 134-167 1077-1110(1146)
159 cd00210 PTS_IIA_glc PTS_IIA, P 81.5 1.3 2.9E-05 37.5 2.8 28 104-131 78-105 (124)
160 KOG0369 Pyruvate carboxylase [ 81.5 4.3 9.4E-05 43.6 7.0 33 134-166 1107-1139(1176)
161 COG4656 RnfC Predicted NADH:ub 81.5 1.3 2.8E-05 45.9 3.2 39 108-148 45-83 (529)
162 PLN02528 2-oxoisovalerate dehy 81.4 1.9 4.2E-05 43.7 4.4 32 101-132 46-77 (416)
163 TIGR02712 urea_carbox urea car 80.9 2.1 4.5E-05 49.2 4.9 35 134-168 1133-1167(1201)
164 COG2190 NagE Phosphotransferas 80.4 3.1 6.8E-05 36.7 4.8 28 105-132 86-113 (156)
165 TIGR00164 PS_decarb_rel phosph 80.2 3.7 8.1E-05 37.1 5.4 52 105-161 130-181 (189)
166 TIGR00830 PTBA PTS system, glu 80.1 1.5 3.3E-05 37.0 2.7 28 104-131 78-105 (121)
167 PF00358 PTS_EIIA_1: phosphoen 79.2 1.2 2.7E-05 38.1 1.9 29 104-132 82-110 (132)
168 COG0508 AceF Pyruvate/2-oxoglu 78.9 2.5 5.5E-05 42.8 4.3 31 103-133 52-82 (404)
169 COG1566 EmrA Multidrug resista 78.2 3.2 6.9E-05 41.4 4.7 36 133-168 53-88 (352)
170 PRK09439 PTS system glucose-sp 78.1 3.7 8E-05 36.7 4.6 28 104-131 100-127 (169)
171 PRK09439 PTS system glucose-sp 77.3 5.7 0.00012 35.5 5.6 22 145-166 104-125 (169)
172 TIGR01349 PDHac_trf_mito pyruv 74.6 4.1 8.9E-05 41.7 4.5 29 103-131 49-78 (435)
173 PF02666 PS_Dcarbxylase: Phosp 74.5 5.1 0.00011 36.4 4.7 68 93-163 134-202 (202)
174 PRK09824 PTS system beta-gluco 74.0 3.4 7.3E-05 44.2 3.8 28 104-131 558-585 (627)
175 PRK12784 hypothetical protein; 74.0 4.7 0.0001 31.5 3.6 35 135-169 7-41 (84)
176 TIGR01995 PTS-II-ABC-beta PTS 73.0 3.6 7.9E-05 43.8 3.8 26 105-130 543-568 (610)
177 COG1038 PycA Pyruvate carboxyl 72.7 8.8 0.00019 42.1 6.5 33 134-166 1080-1112(1149)
178 PRK11892 pyruvate dehydrogenas 70.7 5.4 0.00012 41.1 4.3 30 102-131 51-81 (464)
179 COG0157 NadC Nicotinate-nucleo 70.2 4.3 9.4E-05 39.1 3.2 25 106-130 64-88 (280)
180 PRK11856 branched-chain alpha- 69.0 8.4 0.00018 38.8 5.2 30 103-132 52-81 (411)
181 PRK10255 PTS system N-acetyl g 67.9 6.9 0.00015 42.1 4.5 29 104-132 578-606 (648)
182 TIGR03309 matur_yqeB selenium- 65.8 8 0.00017 36.8 4.0 33 133-166 164-196 (256)
183 PRK08072 nicotinate-nucleotide 64.7 6.9 0.00015 37.7 3.4 22 108-129 66-87 (277)
184 PRK02693 apocytochrome f; Revi 64.2 21 0.00046 34.4 6.5 81 56-163 173-256 (312)
185 cd01572 QPRTase Quinolinate ph 64.1 7.9 0.00017 37.0 3.7 26 104-129 56-81 (268)
186 PLN02744 dihydrolipoyllysine-r 63.1 7.9 0.00017 40.7 3.8 29 102-130 161-190 (539)
187 PRK10255 PTS system N-acetyl g 62.5 17 0.00037 39.2 6.2 43 121-166 526-603 (648)
188 PRK06543 nicotinate-nucleotide 61.5 8.5 0.00018 37.2 3.4 24 106-129 65-88 (281)
189 cd06255 M14_ASTE_ASPA_like_5 A 61.3 12 0.00026 36.1 4.4 34 133-167 231-264 (293)
190 cd01573 modD_like ModD; Quinol 60.5 9 0.00019 36.7 3.4 24 106-129 56-79 (272)
191 PRK14844 bifunctional DNA-dire 60.5 16 0.00034 45.1 5.9 20 109-128 2423-2442(2836)
192 PRK05742 nicotinate-nucleotide 60.3 9.2 0.0002 36.8 3.4 22 108-129 68-89 (277)
193 TIGR02643 T_phosphoryl thymidi 60.3 7.2 0.00016 40.0 2.8 26 103-128 377-402 (437)
194 PRK06096 molybdenum transport 60.2 9.1 0.0002 37.0 3.4 22 107-128 62-83 (284)
195 cd01568 QPRTase_NadC Quinolina 59.4 9.7 0.00021 36.3 3.4 26 105-130 56-81 (269)
196 PRK05820 deoA thymidine phosph 59.3 7.7 0.00017 39.8 2.8 29 101-129 376-404 (440)
197 PF01551 Peptidase_M23: Peptid 59.3 35 0.00075 26.6 6.1 57 103-168 20-76 (96)
198 PRK06078 pyrimidine-nucleoside 58.7 8.5 0.00018 39.4 3.0 31 102-132 372-402 (434)
199 cd06253 M14_ASTE_ASPA_like_3 A 58.7 13 0.00029 35.9 4.3 34 133-167 229-262 (298)
200 PRK03934 phosphatidylserine de 58.5 20 0.00044 34.1 5.4 56 105-164 210-265 (265)
201 PRK09016 quinolinate phosphori 58.5 10 0.00022 36.9 3.4 21 108-128 87-107 (296)
202 PRK07428 nicotinate-nucleotide 57.8 11 0.00023 36.6 3.4 24 106-129 72-95 (288)
203 PRK06978 nicotinate-nucleotide 57.5 11 0.00023 36.7 3.4 47 270-319 207-254 (294)
204 TIGR02645 ARCH_P_rylase putati 57.5 9.1 0.0002 39.8 3.1 32 98-129 439-470 (493)
205 PRK05848 nicotinate-nucleotide 57.2 11 0.00024 36.2 3.4 22 108-129 60-81 (273)
206 PRK07896 nicotinate-nucleotide 56.8 11 0.00024 36.5 3.4 23 107-129 77-99 (289)
207 PRK03140 phosphatidylserine de 56.7 13 0.00029 35.2 3.9 51 112-163 207-257 (259)
208 KOG0238 3-Methylcrotonyl-CoA c 56.3 9.1 0.0002 39.9 2.8 32 135-166 603-634 (670)
209 cd06254 M14_ASTE_ASPA_like_4 A 56.3 16 0.00036 34.9 4.5 35 132-167 222-256 (288)
210 PLN02716 nicotinate-nucleotide 56.2 12 0.00025 36.7 3.4 24 106-129 78-101 (308)
211 cd06250 M14_PaAOTO_like An unc 55.9 16 0.00035 36.3 4.5 34 134-168 290-323 (359)
212 PF01333 Apocytochr_F_C: Apocy 55.9 18 0.00039 30.3 3.9 51 103-163 9-62 (118)
213 cd06251 M14_ASTE_ASPA_like_1 A 55.6 17 0.00038 34.8 4.5 33 134-167 220-252 (287)
214 PRK06106 nicotinate-nucleotide 55.6 12 0.00027 36.1 3.4 25 105-129 69-93 (281)
215 TIGR00078 nadC nicotinate-nucl 55.2 13 0.00028 35.5 3.4 22 108-129 56-77 (265)
216 PRK04350 thymidine phosphoryla 54.9 11 0.00023 39.3 3.0 32 98-129 431-462 (490)
217 PRK08385 nicotinate-nucleotide 54.8 13 0.00028 35.9 3.4 56 253-313 169-225 (278)
218 cd01134 V_A-ATPase_A V/A-type 54.7 29 0.00062 34.8 5.9 56 111-168 54-112 (369)
219 PF06898 YqfD: Putative stage 54.6 21 0.00046 35.8 5.1 53 104-163 167-226 (385)
220 TIGR01334 modD putative molybd 53.9 13 0.00029 35.7 3.4 23 107-129 61-83 (277)
221 cd06252 M14_ASTE_ASPA_like_2 A 53.9 26 0.00056 34.1 5.5 36 131-167 242-277 (316)
222 TIGR01042 V-ATPase_V1_A V-type 53.7 28 0.0006 37.1 5.9 56 111-168 123-181 (591)
223 TIGR02644 Y_phosphoryl pyrimid 53.4 13 0.00028 37.8 3.4 29 102-130 370-398 (405)
224 cd06910 M14_ASTE_ASPA_like_7 A 53.2 19 0.00041 34.3 4.3 45 112-163 226-271 (272)
225 CHL00037 petA cytochrome f 52.9 24 0.00051 34.3 4.8 51 103-163 210-264 (320)
226 TIGR03327 AMP_phos AMP phospho 52.9 12 0.00025 39.1 2.9 32 98-129 440-471 (500)
227 TIGR00999 8a0102 Membrane Fusi 52.5 22 0.00047 32.8 4.5 33 91-129 89-121 (265)
228 TIGR02994 ectoine_eutE ectoine 52.5 20 0.00043 35.2 4.4 34 133-167 255-288 (325)
229 COG3608 Predicted deacylase [G 51.6 24 0.00052 34.9 4.7 41 125-168 250-290 (331)
230 PF07831 PYNP_C: Pyrimidine nu 51.5 26 0.00056 26.9 4.0 30 139-170 30-59 (75)
231 KOG0557 Dihydrolipoamide acety 50.2 15 0.00033 37.7 3.2 31 139-169 50-80 (470)
232 PF01551 Peptidase_M23: Peptid 49.5 15 0.00032 28.7 2.5 27 105-131 50-76 (96)
233 PF05896 NQRA: Na(+)-transloca 47.6 14 0.00031 35.2 2.4 30 135-164 31-60 (257)
234 TIGR02645 ARCH_P_rylase putati 46.3 37 0.00081 35.4 5.4 42 127-168 407-472 (493)
235 TIGR00830 PTBA PTS system, glu 45.6 35 0.00076 28.8 4.3 40 121-166 64-103 (121)
236 PF13375 RnfC_N: RnfC Barrel s 45.6 36 0.00079 27.7 4.2 28 139-166 36-63 (101)
237 PRK10871 nlpD lipoprotein NlpD 45.0 52 0.0011 32.4 5.9 26 144-169 269-294 (319)
238 cd00210 PTS_IIA_glc PTS_IIA, P 45.0 35 0.00076 28.9 4.2 40 121-166 64-103 (124)
239 PF06898 YqfD: Putative stage 44.1 28 0.00062 34.9 4.1 23 104-126 197-226 (385)
240 PRK08662 nicotinate phosphorib 43.7 22 0.00049 35.2 3.3 25 104-130 69-93 (343)
241 TIGR00163 PS_decarb phosphatid 43.1 24 0.00052 33.1 3.2 48 115-163 189-236 (238)
242 PRK09824 PTS system beta-gluco 41.9 45 0.00097 35.9 5.4 21 146-166 563-583 (627)
243 PRK07188 nicotinate phosphorib 41.0 32 0.00069 34.3 3.8 23 107-129 72-94 (352)
244 TIGR02876 spore_yqfD sporulati 40.0 33 0.00071 34.5 3.8 54 104-163 163-223 (382)
245 PRK06559 nicotinate-nucleotide 39.4 30 0.00065 33.6 3.3 25 105-129 70-96 (290)
246 PRK04192 V-type ATP synthase s 38.6 71 0.0015 34.1 6.1 56 111-168 123-181 (586)
247 KOG1668 Elongation factor 1 be 38.4 19 0.00041 33.8 1.7 28 109-136 181-208 (231)
248 KOG0368 Acetyl-CoA carboxylase 37.2 48 0.0011 39.1 4.8 79 88-166 633-718 (2196)
249 TIGR01043 ATP_syn_A_arch ATP s 36.1 69 0.0015 34.1 5.6 55 112-168 121-178 (578)
250 PRK04350 thymidine phosphoryla 36.1 66 0.0014 33.6 5.4 42 127-168 399-464 (490)
251 TIGR00164 PS_decarb_rel phosph 35.9 1.5E+02 0.0034 26.5 7.2 70 92-168 74-155 (189)
252 COG4072 Uncharacterized protei 35.9 68 0.0015 27.8 4.5 31 138-168 96-126 (161)
253 PRK14698 V-type ATP synthase s 35.7 73 0.0016 36.3 6.0 68 93-168 107-181 (1017)
254 PRK00044 psd phosphatidylserin 35.4 38 0.00083 32.6 3.4 58 106-165 224-286 (288)
255 COG2190 NagE Phosphotransferas 34.9 57 0.0012 28.8 4.0 25 142-166 86-110 (156)
256 COG1155 NtpA Archaeal/vacuolar 34.8 95 0.0021 32.8 6.2 57 112-169 122-180 (588)
257 cd00516 PRTase_typeII Phosphor 34.6 40 0.00087 31.8 3.4 27 104-130 48-74 (281)
258 PRK10871 nlpD lipoprotein NlpD 34.5 23 0.00049 34.9 1.6 21 109-129 271-291 (319)
259 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 34.1 33 0.00071 26.2 2.2 51 110-162 2-62 (86)
260 CHL00117 rpoC2 RNA polymerase 34.0 43 0.00094 39.1 4.0 36 109-144 405-448 (1364)
261 TIGR03327 AMP_phos AMP phospho 33.5 75 0.0016 33.3 5.3 41 129-169 410-474 (500)
262 TIGR02876 spore_yqfD sporulati 33.4 55 0.0012 32.9 4.2 25 103-127 193-224 (382)
263 PRK05305 phosphatidylserine de 31.7 1.5E+02 0.0033 27.0 6.5 64 103-167 98-174 (206)
264 PRK02259 aspartoacylase; Provi 31.7 19 0.00042 34.6 0.6 50 111-163 231-282 (288)
265 PF09891 DUF2118: Uncharacteri 31.5 50 0.0011 29.0 3.1 41 117-168 75-115 (150)
266 PF00358 PTS_EIIA_1: phosphoen 31.3 36 0.00079 29.1 2.2 22 145-166 86-107 (132)
267 PRK05820 deoA thymidine phosph 31.1 77 0.0017 32.6 4.9 23 146-168 384-406 (440)
268 COG0213 DeoA Thymidine phospho 31.0 49 0.0011 33.8 3.4 22 147-168 381-402 (435)
269 TIGR02644 Y_phosphoryl pyrimid 30.2 94 0.002 31.7 5.3 41 128-168 328-399 (405)
270 PRK11536 6-N-hydroxylaminopuri 30.1 69 0.0015 29.9 4.0 74 92-167 78-166 (223)
271 cd01571 NAPRTase_B Nicotinate 30.0 54 0.0012 31.8 3.4 24 105-130 53-76 (302)
272 TIGR02643 T_phosphoryl thymidi 29.8 85 0.0018 32.3 4.9 22 147-168 384-405 (437)
273 cd06848 GCS_H Glycine cleavage 29.6 72 0.0016 25.2 3.6 30 140-169 27-57 (96)
274 CHL00037 petA cytochrome f 29.5 1.3E+02 0.0027 29.5 5.7 60 90-151 158-221 (320)
275 COG2258 Uncharacterized protei 25.6 1E+02 0.0023 28.5 4.3 74 93-168 76-164 (210)
276 PF01333 Apocytochr_F_C: Apocy 25.5 23 0.00049 29.8 -0.1 17 109-125 45-61 (118)
277 PRK02597 rpoC2 DNA-directed RN 25.4 89 0.0019 36.5 4.5 35 110-144 405-446 (1331)
278 TIGR01936 nqrA NADH:ubiquinone 25.1 41 0.00089 34.6 1.7 31 136-166 32-62 (447)
279 PF02666 PS_Dcarbxylase: Phosp 24.8 29 0.00062 31.5 0.5 22 105-126 181-202 (202)
280 PRK06078 pyrimidine-nucleoside 24.6 1.2E+02 0.0026 31.2 4.9 20 147-166 380-399 (434)
281 cd04454 S1_Rrp4_like S1_Rrp4_l 24.1 1.1E+02 0.0024 23.1 3.6 51 110-162 2-58 (82)
282 PRK09603 bifunctional DNA-dire 23.4 1.2E+02 0.0026 38.2 5.2 52 110-161 2616-2720(2890)
283 PTZ00403 phosphatidylserine de 23.2 70 0.0015 32.0 2.8 60 104-166 280-340 (353)
284 COG1326 Uncharacterized archae 23.0 2.5E+02 0.0055 25.8 6.1 52 91-157 52-103 (201)
285 PF02749 QRPTase_N: Quinolinat 22.4 98 0.0021 24.1 3.1 22 145-166 47-68 (88)
286 PRK11637 AmiB activator; Provi 22.1 1.7E+02 0.0036 29.6 5.4 57 103-168 346-402 (428)
287 PRK05352 Na(+)-translocating N 21.1 55 0.0012 33.7 1.7 30 136-165 33-62 (448)
288 COG0197 RplP Ribosomal protein 21.0 88 0.0019 27.4 2.7 31 98-134 86-116 (146)
289 PF11160 DUF2945: Protein of u 20.9 1.9E+02 0.004 21.6 4.0 35 97-131 7-47 (62)
290 PF09793 AD: Anticodon-binding 20.7 3.5E+02 0.0075 21.3 5.9 38 293-334 28-65 (91)
No 1
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=2.4e-55 Score=439.35 Aligned_cols=323 Identities=63% Similarity=0.923 Sum_probs=232.0
Q ss_pred Cee-eeEeeech---hhHHhhhhccccCCccccchhhh-----hhhhccCceeeeccceee--ccCcccccCCCchhhhh
Q 019331 1 MIW-GIVRRKIT---SAQVIGQSVSKIGPRCHATAQKE-----AILTCRGFQRVQRSSYHI--LSGNYVCSTPRSEVIEL 69 (342)
Q Consensus 1 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 69 (342)
||+ .|+||--+ ++++++.+++.-|-..++.+... .+++.+.+.|- ||- +.++-.|..+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-- 74 (463)
T PLN02226 1 MMLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLHRGNHAHS----FHNLALPGNSGISRSASLVS-- 74 (463)
T ss_pred CcHHHHHHhhccCCCChhhhhhhhhhchhhccCcccccccccchhhhccccccc----hhhcccCCccccCCchhhhh--
Confidence 454 56666554 88999999988776644444332 15555554442 333 344545555543222
Q ss_pred hhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeee
Q 019331 70 IQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (342)
Q Consensus 70 ~~~~~~~~~~~r~~~~~~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (342)
...++|.|.|....+.+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++
T Consensus 75 ----~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 75 ----STLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150 (463)
T ss_pred ----hhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence 3345788888887666699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEecCCCeEEEEecCCcccccccccccccCCCCCCCCCCCCcCCCCCcccCcccccCC-CCCCCCCCCCCCCCCCCC
Q 019331 150 KEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-PSEPPPTAKKPTSPPSKP 228 (342)
Q Consensus 150 ~~G~~v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-~~~~~~~~~~~~~~~~~~ 228 (342)
++||.|++|++|+.|+++++.........+.+....+.+..+........+.++|++|+.+ ++++.+ +. .
T Consensus 151 ~eGd~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~----~~-----~ 221 (463)
T PLN02226 151 KEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPP----PK-----Q 221 (463)
T ss_pred CCCCEecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCC----Cc-----c
Confidence 9999999999999997543221100000000000000000000000112345777776542 111100 00 0
Q ss_pred CCCCCCCCCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHH
Q 019331 229 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV 308 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva 308 (342)
....+..+.....+.+||++|||.||++|++||+++||||+++|+|+|+|+++|+++|+.+.+++|+|+||++||+||++
T Consensus 222 ~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva 301 (463)
T PLN02226 222 SAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV 301 (463)
T ss_pred cccCcccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHH
Confidence 00000000111245689999999999999999999999999999999999999999998776667999999999999999
Q ss_pred HHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 019331 309 SALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 309 ~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
+||++||.+|++|+++.|+++++|||||||||++
T Consensus 302 ~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~ 335 (463)
T PLN02226 302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSK 335 (463)
T ss_pred HHHHhCCHhheEEcCCEEEEeCcccEEEEEECCC
Confidence 9999999999999999999999999999999974
No 2
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.3e-51 Score=406.33 Aligned_cols=253 Identities=39% Similarity=0.618 Sum_probs=194.4
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.++|+||+|||+|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++||+|+||++|++|++++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccccccccccccCCCCCC-CCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCCC---------CCCC
Q 019331 169 EGVAQAASAEKAAAQPPPA-EEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPTS---------PPSK 227 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~asP~vr~~~-----------~~~~~~~~~~~~~---------~~~~ 227 (342)
+......+....+....+. .+............++|++|+++ ++++.+.....+. +...
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~ 160 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA 160 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence 6421111000000000000 00000011114567899998864 2344333221110 0000
Q ss_pred CCCCCCCC-CCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHH
Q 019331 228 PMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 306 (342)
Q Consensus 228 ~~~~~~~~-~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKA 306 (342)
.....+.. .....++++||+++||.|+++|..||+++||+|++.|+|++.|+++|+++|..+.++ |+||||++||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA 239 (404)
T COG0508 161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA 239 (404)
T ss_pred cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence 00000000 123457789999999999999999999999999999999999999999999988755 9999999999999
Q ss_pred HHHHHhhCCcceeEEeCC--eEEEcCCccEEEEeecCC
Q 019331 307 AVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 307 va~AL~~~P~lNas~d~~--~Iv~~~~vnIGIAV~Tp~ 342 (342)
++.||++||.+|++||++ .|++++|+||||||+||+
T Consensus 240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~ 277 (404)
T COG0508 240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPR 277 (404)
T ss_pred HHHHHHhCCccceeeccccceEEEeccccEEEEEecCC
Confidence 999999999999999975 799999999999999984
No 3
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.1e-49 Score=396.51 Aligned_cols=254 Identities=46% Similarity=0.682 Sum_probs=192.1
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.++
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred cccccc-cccccccCCCCCCCCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCC----------CCCC
Q 019331 169 EGVAQA-ASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT----------SPPS 226 (342)
Q Consensus 169 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-----------~~~~~~~~~~~~----------~~~~ 226 (342)
+..... .+...++..+.+.+.............+||++|+++ ++|+.+...+.+ .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 322110 000000000000000000011112346899999863 455554432110 0000
Q ss_pred CCCCC-CCCC--CCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHH
Q 019331 227 KPMAS-EPQL--PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 303 (342)
Q Consensus 227 ~~~~~-~~~~--~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fi 303 (342)
.+... .+.. ......+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.++.|+|+||++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l 240 (407)
T PRK05704 161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF 240 (407)
T ss_pred CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence 00000 0000 00112456899999999999999999999999999999999999999999987766678999999999
Q ss_pred HHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 019331 304 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 304 iKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
+||+++||++||.||++|+++.|++++++||||||++++
T Consensus 241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~ 279 (407)
T PRK05704 241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPR 279 (407)
T ss_pred HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCC
Confidence 999999999999999999999999999999999999974
No 4
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=2.4e-49 Score=393.40 Aligned_cols=245 Identities=49% Similarity=0.747 Sum_probs=184.0
Q ss_pred CCCCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 85 ~~~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
...+.+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|
T Consensus 39 ~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I 118 (418)
T PTZ00144 39 KSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEI 118 (418)
T ss_pred cccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEE
Confidence 33455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccccccccccccCCCC-CCCCCC---CCcC---CCCCcccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019331 165 SKSGEGVAQAASAEKAAAQPP-PAEEKP---SAEK---QTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPP 237 (342)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~---~~~~~~asP~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
+..++..... .....+..++ +.+... .+.. ......++|.+|+...+ +.+.+.+ .+....
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~~-----------~~~~~~~-~~~~~~ 185 (418)
T PTZ00144 119 DTGGAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA-----------PAAKPPP-TPVARA 185 (418)
T ss_pred cCCCcccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhccccC-----------CCCCCCC-CCcccc
Confidence 7654321100 0000000000 000000 0000 00012344554432100 0000000 000000
Q ss_pred CCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcc
Q 019331 238 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 317 (342)
Q Consensus 238 ~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~l 317 (342)
....+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+||||++||+||++.||++||.+
T Consensus 186 ~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~ 265 (418)
T PTZ00144 186 DPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIV 265 (418)
T ss_pred CCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHh
Confidence 11234589999999999999999999999999999999999999999998776667999999999999999999999999
Q ss_pred eeEEeCCeEEEcCCccEEEEeecCC
Q 019331 318 NAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 318 Nas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|++|+++.|+++++||||||||+++
T Consensus 266 Na~~~~~~i~~~~~vnIgvAV~~~~ 290 (418)
T PTZ00144 266 NAYIDGDEIVYRNYVDISVAVATPT 290 (418)
T ss_pred heEEcCCEEEEecCCCEEEEEECCC
Confidence 9999998999999999999999974
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=3.1e-49 Score=392.73 Aligned_cols=251 Identities=45% Similarity=0.700 Sum_probs=190.4
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCcc
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~~ 170 (342)
++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++|++||++|+|.++++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred cccccccccc--cCCCCCCCCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCC------CC--CCCCC
Q 019331 171 VAQAASAEKA--AAQPPPAEEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT------SP--PSKPM 229 (342)
Q Consensus 171 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-----------~~~~~~~~~~~~------~~--~~~~~ 229 (342)
... .+.... .....+.+..+.+......+.+||++|+++ ++|+.+...+.+ .. .+.+.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~ 159 (403)
T TIGR01347 81 TAA-PPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPA 159 (403)
T ss_pred ccc-ccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCC
Confidence 110 000000 000000000000011112346899999864 455554432110 00 00000
Q ss_pred C-CCCCCC--CCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHH
Q 019331 230 A-SEPQLP--PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 306 (342)
Q Consensus 230 ~-~~~~~~--~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKA 306 (342)
. .....+ .....+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||
T Consensus 160 ~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA 239 (403)
T TIGR01347 160 PAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKA 239 (403)
T ss_pred CCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHH
Confidence 0 000000 0112456899999999999999999999999999999999999999999987766679999999999999
Q ss_pred HHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 019331 307 AVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 307 va~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
++.||++||.||++|+++.|+++++|||||||++++
T Consensus 240 ~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~ 275 (403)
T TIGR01347 240 VVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDR 275 (403)
T ss_pred HHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCC
Confidence 999999999999999999999999999999999974
No 6
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=3.1e-49 Score=402.47 Aligned_cols=264 Identities=25% Similarity=0.345 Sum_probs=197.3
Q ss_pred ccccccCCCCc--eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC-Ee
Q 019331 79 RSRLFSSDSGD--LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TV 155 (342)
Q Consensus 79 ~~r~~~~~~~~--~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~-~v 155 (342)
+.|.|++..++ .++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++|++|+++|+|.+|++++|+ .|
T Consensus 99 ~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v 178 (539)
T PLN02744 99 SARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEI 178 (539)
T ss_pred ccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCccc
Confidence 46888876544 5899999999999999999999999999999999999999999999999999999999999996 79
Q ss_pred cCCCeEEEEecCCccccc-----c----ccccc----ccCCCCCC----C-CCCC----Cc-C---CCCCcccCcccccC
Q 019331 156 EPGAKIAVISKSGEGVAQ-----A----ASAEK----AAAQPPPA----E-EKPS----AE-K---QTPESEAAPAVKDK 209 (342)
Q Consensus 156 ~vG~~la~i~~~~~~~~~-----~----~~~~~----~~~~~~~~----~-~~~~----~~-~---~~~~~~asP~vr~~ 209 (342)
++|++|++|.+++++... . .+... .+..+... + +.+. .. . ....+.++|++|++
T Consensus 179 ~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrL 258 (539)
T PLN02744 179 KVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKL 258 (539)
T ss_pred CCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHH
Confidence 999999998543332100 0 00000 00000000 0 0000 00 0 11134689999986
Q ss_pred C-----------CCCCCCCCCCCCC----C--CCCCCCCCC--CCCCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEE
Q 019331 210 T-----------PSEPPPTAKKPTS----P--PSKPMASEP--QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTF 270 (342)
Q Consensus 210 ~-----------~~~~~~~~~~~~~----~--~~~~~~~~~--~~~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~ 270 (342)
+ ++|+.+...+.+. . ...+..+.+ ...+...++.+||++|||+||++|++||+++||||++
T Consensus 259 Are~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~ 338 (539)
T PLN02744 259 AEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLT 338 (539)
T ss_pred HHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEE
Confidence 3 4565554432110 0 000000000 0011112356899999999999999999999999999
Q ss_pred eEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 019331 271 NEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 271 ~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
.|+|+|+|+++|+++|+.+.+..|+||||++||+||+++||++||.||++|+++.|+++++|||||||||++
T Consensus 339 ~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~ 410 (539)
T PLN02744 339 VDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTEN 410 (539)
T ss_pred EEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCC
Confidence 999999999999999987655568999999999999999999999999999999999999999999999974
No 7
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=8.3e-50 Score=379.20 Aligned_cols=249 Identities=55% Similarity=0.853 Sum_probs=187.1
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..++..|-++|+++||+|.+|++++||.|+++|.||+|||||.+++|+||.+|+|.++++++||+|..|+.|+.|.....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA 151 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA 151 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999987433
Q ss_pred cccc--ccccccccCCCCCCCCCCCCcCCCCCcccCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCC
Q 019331 170 GVAQ--AASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDK-TPSEPPPTAKKPTSPPSKPMASEPQLP------PKDR 240 (342)
Q Consensus 170 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 240 (342)
+... .+|+.+.+.++.+...++....+.+...+.|..+.. +++.+. +.. +++..++..++..+ +...
T Consensus 152 pa~~~~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~--P~~--~~a~k~~v~~~~~~p~~~~~~~R~ 227 (457)
T KOG0559|consen 152 PAKGGASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPE--PVP--ASAKKPSVAQPKPPPSEGATPSRS 227 (457)
T ss_pred CccccccCCCccCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCC--CCC--ccccCccccCCCCCcccccCCCcc
Confidence 2211 122222111100000000001111111222222110 000000 000 00000011111111 1344
Q ss_pred cceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeE
Q 019331 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 241 ~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas 320 (342)
+++++|++||+.||+||.+|+++.+.+|+|+||||++|+++|+++|+.|.+++|+||+||.+|+||++.||++.|.+|+.
T Consensus 228 E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNav 307 (457)
T KOG0559|consen 228 ERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAV 307 (457)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeee
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEcCCccEEEEeecCC
Q 019331 321 IDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 321 ~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
+||++|+|.+|+||+|||+||+
T Consensus 308 Idg~~iVYRDyvDISvAVaTpk 329 (457)
T KOG0559|consen 308 IDGDDIVYRDYVDISVAVATPK 329 (457)
T ss_pred ecCCeeEEeecceeEEEeecCC
Confidence 9999999999999999999985
No 8
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.1e-48 Score=405.37 Aligned_cols=255 Identities=34% Similarity=0.540 Sum_probs=190.5
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 88 ~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
++.++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++|+.|++|++|+.|+.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred Cccccc-----ccc-c------ccccC-CCC----CCC--------CCC--C-C-c--C-CCCCcccCcccccCC-----
Q 019331 168 GEGVAQ-----AAS-A------EKAAA-QPP----PAE--------EKP--S-A-E--K-QTPESEAAPAVKDKT----- 210 (342)
Q Consensus 168 ~~~~~~-----~~~-~------~~~~~-~~~----~~~--------~~~--~-~-~--~-~~~~~~asP~vr~~~----- 210 (342)
++.... ... . ...+. ... ..+ ... . . . . ....+.++|++|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence 432110 000 0 00000 000 000 000 0 0 0 0 112356899999863
Q ss_pred ------CCCCCCCCCCC-------------CCCCCC---CCCCC---CCC-C-C---CCCcceeeCcHHHHHHHHHHHhc
Q 019331 211 ------PSEPPPTAKKP-------------TSPPSK---PMASE---PQL-P-P---KDRERRVPMTRLRKRVATRLKDS 260 (342)
Q Consensus 211 ------~~~~~~~~~~~-------------~~~~~~---~~~~~---~~~-~-~---~~~~~~vpls~~Rk~IA~~M~~S 260 (342)
++|+.++..+. ..+.+. ..+.. +.. + + ...++.+||++|||.||++|++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 45555443210 000000 00000 000 0 0 01245689999999999999999
Q ss_pred ccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEe
Q 019331 261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAV 338 (342)
Q Consensus 261 ~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~--~~Iv~~~~vnIGIAV 338 (342)
|+++||||+++|||||+|+++|+++|+.+.+++|+|||||+||+||+++||++||.||++|++ ++|+|+++|||||||
T Consensus 373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv 452 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV 452 (590)
T ss_pred hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence 999999999999999999999999998766666899999999999999999999999999975 479999999999999
Q ss_pred ecCC
Q 019331 339 GTKK 342 (342)
Q Consensus 339 ~Tp~ 342 (342)
||++
T Consensus 453 ~t~~ 456 (590)
T TIGR02927 453 DTDA 456 (590)
T ss_pred ECCC
Confidence 9984
No 9
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=2.4e-49 Score=374.61 Aligned_cols=285 Identities=22% Similarity=0.354 Sum_probs=212.2
Q ss_pred eccceeeccCcccccCCCchhhhhhhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEE
Q 019331 46 QRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIA 125 (342)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~ 125 (342)
.+++.|..+++|.|+..+.+..+ .+ .........+.+| .++|++.|+||||.|+++.+|+|||||+|++.|+||
T Consensus 26 ~~~~~h~skp~~v~l~~~~~~~~-s~----~~~~~~~t~s~~g-vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lC 99 (474)
T KOG0558|consen 26 LSSSLHVSKPFFVTLMKWGGGSR-SW----FSNEAMATDSNSG-VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLC 99 (474)
T ss_pred hccCccccCcceEEEeccCCccc-cc----cchhhhhcccccc-eEEEEhhhccccceeeeeeeehhhcCCcHHHhcchh
Confidence 34556778889999998766652 11 0000111112234 789999999999999999999999999999999999
Q ss_pred EEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCcccccccccccccCCCCCCC-CCCCCcCCCCCcccCc
Q 019331 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAE-EKPSAEKQTPESEAAP 204 (342)
Q Consensus 126 evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~asP 204 (342)
||++|||+++|.+.|+|+|++|+.+.||.+.||++|..++.++..... ++..+.++... .....+....+.+++|
T Consensus 100 EVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds~----e~s~es~~vs~~~~~~~~~~~~~tlaTP 175 (474)
T KOG0558|consen 100 EVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDSP----EDSDESPAVSLGESKQGEESLLKTLATP 175 (474)
T ss_pred hcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCCc----ccCCccccccCCCCchhhhhccccccCH
Confidence 999999999999999999999999999999999999999977643211 11111111111 1111233445678999
Q ss_pred ccccCC-----------CCCCCCCCCC----------CC---CCCCC-------CCCCCCCCCCCCCcceeeCcHHHHHH
Q 019331 205 AVKDKT-----------PSEPPPTAKK----------PT---SPPSK-------PMASEPQLPPKDRERRVPMTRLRKRV 253 (342)
Q Consensus 205 ~vr~~~-----------~~~~~~~~~~----------~~---~~~~~-------~~~~~~~~~~~~~~~~vpls~~Rk~I 253 (342)
+||+++ ++|..++.-+ +. .+.+. +++...+.+.-..+..+|+.|++|+|
T Consensus 176 aVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAM 255 (474)
T KOG0558|consen 176 AVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAM 255 (474)
T ss_pred HHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHH
Confidence 999864 3333332211 00 00000 00000111112336789999999999
Q ss_pred HHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCC
Q 019331 254 ATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDY 331 (342)
Q Consensus 254 A~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~--~~Iv~~~~ 331 (342)
.+.|+++ ..||||.+.+|||+|.|+++|++||.... +.|+|+|||+||+||+++||.+||.+|+++|+ +.|+++.+
T Consensus 256 vKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~a~-e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~s 333 (474)
T KOG0558|consen 256 VKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKENAK-ERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGS 333 (474)
T ss_pred HHHHHHH-hcCCccccccccChHHHHHHHHHHhhhhh-hcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcc
Confidence 9999999 57999999999999999999999998654 56999999999999999999999999999997 57999999
Q ss_pred ccEEEEeecCC
Q 019331 332 IDISFAVGTKK 342 (342)
Q Consensus 332 vnIGIAV~Tp~ 342 (342)
||||||+|||+
T Consensus 334 HNIgvAmdT~~ 344 (474)
T KOG0558|consen 334 HNIGVAMDTEQ 344 (474)
T ss_pred cceeEEecCCC
Confidence 99999999985
No 10
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=5.8e-46 Score=382.24 Aligned_cols=251 Identities=27% Similarity=0.436 Sum_probs=186.4
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
.++|+||+||+ |+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999986443
Q ss_pred ccccc-cccc-----cccCC--CCC--CCC-CC--CCc-----C-CCCCc-ccCcccccCC-----------CCCCCCCC
Q 019331 170 GVAQA-ASAE-----KAAAQ--PPP--AEE-KP--SAE-----K-QTPES-EAAPAVKDKT-----------PSEPPPTA 218 (342)
Q Consensus 170 ~~~~~-~~~~-----~~~~~--~~~--~~~-~~--~~~-----~-~~~~~-~asP~vr~~~-----------~~~~~~~~ 218 (342)
..... .+.. ..+.. +.+ .+. .. ... . ..... .++|++|+++ ++|+.|..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 0000 00000 000 000 00 000 0 01123 5899998753 45555432
Q ss_pred CCC-------C----CCC-CCCCC-C---CCCCC-----CCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechH
Q 019331 219 KKP-------T----SPP-SKPMA-S---EPQLP-----PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 277 (342)
Q Consensus 219 ~~~-------~----~~~-~~~~~-~---~~~~~-----~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~ 277 (342)
.+. . .+. +.+.. . .+..+ .....+.+||++|||.||++|++||+++||||++.|+|||+
T Consensus 275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~ 354 (546)
T TIGR01348 275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354 (546)
T ss_pred eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence 210 0 000 00000 0 00000 00123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEeecCC
Q 019331 278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 278 L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~--~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|+++|+++|+.+.+ .|+|||||+||+||+++||++||.||++|++ +.|+++++|||||||+|++
T Consensus 355 l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~ 420 (546)
T TIGR01348 355 MEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPN 420 (546)
T ss_pred HHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCC
Confidence 99999999986654 5899999999999999999999999999985 4799999999999999974
No 11
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=5.3e-45 Score=364.08 Aligned_cols=248 Identities=17% Similarity=0.303 Sum_probs=183.0
Q ss_pred EEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCcccc
Q 019331 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA 172 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~~~~ 172 (342)
|+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++|+++|+|.++++++|+.+++|++|+.|+.+++...
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999975543211
Q ss_pred cccccccccC-CCCCCCCC-CCCcCCCCCcccCcccccCC-----------CCCCCCCCCC---------CC---CCCCC
Q 019331 173 QAASAEKAAA-QPPPAEEK-PSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKK---------PT---SPPSK 227 (342)
Q Consensus 173 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~asP~vr~~~-----------~~~~~~~~~~---------~~---~~~~~ 227 (342)
.....+.+.. .+.+.+.. ...........++|++|+++ ++|+.+...+ .. .+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~ 160 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA 160 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence 1000000000 00000000 00001111246899998753 4555443211 00 00000
Q ss_pred C---CCCC------CCCCCCC--CcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCc
Q 019331 228 P---MASE------PQLPPKD--RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 296 (342)
Q Consensus 228 ~---~~~~------~~~~~~~--~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvK 296 (342)
+ .+.. +..+... ..+.+||++|||+||++|++|| ++||||++.|+|+|+|+++|+++|+... ..|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~~-~~g~k 238 (416)
T PLN02528 161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENNT-DPTVK 238 (416)
T ss_pred ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhhh-hcCCc
Confidence 0 0000 0000001 2356899999999999999997 9999999999999999999999987543 45899
Q ss_pred cchHHHHHHHHHHHHhhCCcceeEEeCC--eEEEcCCccEEEEeecCC
Q 019331 297 LGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 297 lS~~~fiiKAva~AL~~~P~lNas~d~~--~Iv~~~~vnIGIAV~Tp~ 342 (342)
||||+||+||+++||++||.||++||++ .|+++++|||||||++++
T Consensus 239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~ 286 (416)
T PLN02528 239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEH 286 (416)
T ss_pred ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCC
Confidence 9999999999999999999999999875 799999999999999974
No 12
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=9.5e-46 Score=362.81 Aligned_cols=253 Identities=25% Similarity=0.351 Sum_probs=193.5
Q ss_pred CCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCC-CEecCCCeEEEEe
Q 019331 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKIAVIS 165 (342)
Q Consensus 87 ~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G-~~v~vG~~la~i~ 165 (342)
.+.+.+|.||.|+.||+||.|++|.+||||.+++||+||||||||++|+++++++|+|.||+++|| ..|+||.+||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 577899999999999999999999999999999999999999999999999999999999999999 6999999999998
Q ss_pred cCCccccccc---cc---c------cccCCCCCC----CC-CC-C----CcCC---CCCcccCcccccC-----------
Q 019331 166 KSGEGVAQAA---SA---E------KAAAQPPPA----EE-KP-S----AEKQ---TPESEAAPAVKDK----------- 209 (342)
Q Consensus 166 ~~~~~~~~~~---~~---~------~~~~~~~~~----~~-~~-~----~~~~---~~~~~asP~vr~~----------- 209 (342)
+.+++.++.+ .+ . +.+..+++. .+ +. . +... ..++.++|+++.+
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 7665543221 10 0 000000000 00 00 0 0001 1256678888754
Q ss_pred CCCCCCCCCCCC-----------CC-CCCCCC--CCCCCC--CCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEE
Q 019331 210 TPSEPPPTAKKP-----------TS-PPSKPM--ASEPQL--PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEV 273 (342)
Q Consensus 210 ~~~~~~~~~~~~-----------~~-~~~~~~--~~~~~~--~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~Ev 273 (342)
.++||.++..+. +. ..++++ +..+.. .....++.+|++.||+.|++||.+|+++|||+|+..++
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~ 274 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDV 274 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeee
Confidence 356666553210 00 000000 001101 11233789999999999999999999999999999999
Q ss_pred echHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeC-CeEEEcCCccEEEEeecCC
Q 019331 274 DMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG-DDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 274 Dvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~-~~Iv~~~~vnIGIAV~Tp~ 342 (342)
+++.|+++|+.+| + ++.+.++|++|||+||++.||+++|++|++|++ +.|++++.|||.+||+|++
T Consensus 275 ~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~ 341 (470)
T KOG0557|consen 275 NLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPN 341 (470)
T ss_pred ehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccC
Confidence 9999999999999 2 366889999999999999999999999999988 7899999999999999984
No 13
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=7.2e-45 Score=364.96 Aligned_cols=248 Identities=29% Similarity=0.382 Sum_probs=185.0
Q ss_pred EEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCE-ecCCCeEEEEecCCccc
Q 019331 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISKSGEGV 171 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~-v~vG~~la~i~~~~~~~ 171 (342)
|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++||++|+|.+|++++|+. +++|++|++|+++++..
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999 99999999997543321
Q ss_pred ccc-----------cccc--cccCCC----CC--CCCCC--CCc---C-----CCCCcccCcccccCC-----------C
Q 019331 172 AQA-----------ASAE--KAAAQP----PP--AEEKP--SAE---K-----QTPESEAAPAVKDKT-----------P 211 (342)
Q Consensus 172 ~~~-----------~~~~--~~~~~~----~~--~~~~~--~~~---~-----~~~~~~asP~vr~~~-----------~ 211 (342)
... .+.. ..+..+ .+ .+... ... . ....+.++|++|+++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 100 0000 000000 00 00000 000 0 011345899998763 4
Q ss_pred CCCCCCCCCC-------C----CCCCCCCCCCC----CCC-CCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEec
Q 019331 212 SEPPPTAKKP-------T----SPPSKPMASEP----QLP-PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDM 275 (342)
Q Consensus 212 ~~~~~~~~~~-------~----~~~~~~~~~~~----~~~-~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDv 275 (342)
+|+.+...+. . .+.+...+..+ ..+ .....+.+||++|||+||++|++||+++||||++.|+||
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~ 241 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNV 241 (435)
T ss_pred CCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEh
Confidence 5555443211 0 00000000000 000 011235689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 019331 276 TNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 276 t~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|+|+++|+++|+.+.+ |+||||++||+||+++||++||.||++|+++.|+++++|||||||++++
T Consensus 242 t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~ 306 (435)
T TIGR01349 242 DKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPD 306 (435)
T ss_pred HHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCC
Confidence 9999999999976532 8899999999999999999999999999998999999999999999974
No 14
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=2e-43 Score=369.24 Aligned_cols=253 Identities=23% Similarity=0.362 Sum_probs=186.0
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 88 ~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
++.++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+++
T Consensus 204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred Cccccccc-c---cccccC--C-CCCCCCCC-C--C----cCCCCCcccCcccccCC-----------CCCCCCCCCCC-
Q 019331 168 GEGVAQAA-S---AEKAAA--Q-PPPAEEKP-S--A----EKQTPESEAAPAVKDKT-----------PSEPPPTAKKP- 221 (342)
Q Consensus 168 ~~~~~~~~-~---~~~~~~--~-~~~~~~~~-~--~----~~~~~~~~asP~vr~~~-----------~~~~~~~~~~~- 221 (342)
++...... + ..+.+. . +.+..... . . ......+.++|++|+++ ++|+.++..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 361 (633)
T PRK11854 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED 361 (633)
T ss_pred CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence 43211100 0 000000 0 00000000 0 0 00112356899999763 45554432210
Q ss_pred ------C----CC-CCCC--CC-CC------CCCCC--CCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHH
Q 019331 222 ------T----SP-PSKP--MA-SE------PQLPP--KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM 279 (342)
Q Consensus 222 ------~----~~-~~~~--~~-~~------~~~~~--~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~ 279 (342)
. .+ .+.+ .. .. +..+. ...++.+||++|||.||++|++||+++||||++.|+|+|+|+
T Consensus 362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~ 441 (633)
T PRK11854 362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441 (633)
T ss_pred HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence 0 00 0000 00 00 00000 012356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hCCCccchHHHHHHHHHHHHhhCCcceeEEe--CCeEEEcCCccEEEEeecCC
Q 019331 280 KLRSDYKDAFLE-KHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 280 ~lR~~lk~~~~~-~~gvKlS~~~fiiKAva~AL~~~P~lNas~d--~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
++|+++|+.... +.|+|+||++||+||+++||++||.||++|+ +++|+++++|||||||++++
T Consensus 442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~ 507 (633)
T PRK11854 442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPN 507 (633)
T ss_pred HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCC
Confidence 999999864322 3589999999999999999999999999997 35799999999999999974
No 15
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.6e-42 Score=357.44 Aligned_cols=253 Identities=34% Similarity=0.520 Sum_probs=186.8
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 88 ~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+...+|+||+||+ |+||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...
T Consensus 117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 3458999999999 999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred Cccc-cc--cccccc--c--c-CCCCCCCC---CCCC-c--CCCCCc-ccCcccccC-----------CCCCCCCCCCCC
Q 019331 168 GEGV-AQ--AASAEK--A--A-AQPPPAEE---KPSA-E--KQTPES-EAAPAVKDK-----------TPSEPPPTAKKP 221 (342)
Q Consensus 168 ~~~~-~~--~~~~~~--~--~-~~~~~~~~---~~~~-~--~~~~~~-~asP~vr~~-----------~~~~~~~~~~~~ 221 (342)
++.. .. ..+.++ . + ....+... .... . ...... .+||++|++ .++|+.+...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 275 (547)
T PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE 275 (547)
T ss_pred CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence 3221 00 000000 0 0 00000000 0000 0 001123 689999875 345555432210
Q ss_pred -------C----CCCCC--C-CC--C-C--CCCCC-----CCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechH
Q 019331 222 -------T----SPPSK--P-MA--S-E--PQLPP-----KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 277 (342)
Q Consensus 222 -------~----~~~~~--~-~~--~-~--~~~~~-----~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~ 277 (342)
. .+.+. + .. . . ...+. ...++.+||++|||.||++|++||+++||||++.|+|+|+
T Consensus 276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~ 355 (547)
T PRK11855 276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355 (547)
T ss_pred HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence 0 00000 0 00 0 0 00000 0124568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEe--CCeEEEcCCccEEEEeecCC
Q 019331 278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 278 L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d--~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|+++|+++|+.+.+ .|+|+||++||+||+++||++||.||++|+ ++.|+++++|||||||++++
T Consensus 356 l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~ 421 (547)
T PRK11855 356 LEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPN 421 (547)
T ss_pred HHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCC
Confidence 99999999976643 489999999999999999999999999998 45899999999999999874
No 16
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.4e-40 Score=332.28 Aligned_cols=248 Identities=34% Similarity=0.560 Sum_probs=185.0
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..+|+||+||++|+||+|++|+|++||.|++||+|++|||||+.++++||++|+|.++++++|+.|.+|++|+.|...++
T Consensus 2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986554
Q ss_pred -ccccccc-ccc-ccCCCCC--CC--CCCCC----c-CCC-CCcccCcccccCC-----------CCCCCCCCCCCC---
Q 019331 170 -GVAQAAS-AEK-AAAQPPP--AE--EKPSA----E-KQT-PESEAAPAVKDKT-----------PSEPPPTAKKPT--- 222 (342)
Q Consensus 170 -~~~~~~~-~~~-~~~~~~~--~~--~~~~~----~-~~~-~~~~asP~vr~~~-----------~~~~~~~~~~~~--- 222 (342)
....... ... +..++.+ .+ ..... . ... ....++|++|+++ ++|+.+...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~ 161 (411)
T PRK11856 82 AEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEA 161 (411)
T ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHH
Confidence 2111100 000 0000000 00 00000 0 001 1235789998753 455554432110
Q ss_pred ----C---CCCCCCCCCCCC-CCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCC
Q 019331 223 ----S---PPSKPMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHG 294 (342)
Q Consensus 223 ----~---~~~~~~~~~~~~-~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~g 294 (342)
. +.+....+.... .....++.+||++|||.||++|++||+++|||+++.++|+|+|+++|+++++. +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~-----~ 236 (411)
T PRK11856 162 AAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI-----G 236 (411)
T ss_pred HHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----c
Confidence 0 000000000000 01123567899999999999999999999999999999999999999999742 4
Q ss_pred CccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 019331 295 VKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 295 vKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
.|+||++||+||+++||++||.||++|+++.|+++++||||+||++++
T Consensus 237 ~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~ 284 (411)
T PRK11856 237 VKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDG 284 (411)
T ss_pred cCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCC
Confidence 799999999999999999999999999999999999999999999874
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=99.94 E-value=1e-26 Score=227.52 Aligned_cols=102 Identities=32% Similarity=0.487 Sum_probs=95.5
Q ss_pred cceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeE
Q 019331 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 241 ~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas 320 (342)
.+.+||++|||.||++|++||+++||||++.|||+|+|+++|+++|+.+.++.|+||||++||+||+++||++||.||++
T Consensus 118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~ 197 (347)
T PRK14843 118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS 197 (347)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence 45689999999999999999999999999999999999999999998776666899999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEeecCC
Q 019331 321 IDG--DDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 321 ~d~--~~Iv~~~~vnIGIAV~Tp~ 342 (342)
||+ +.|+++++||||||||||+
T Consensus 198 ~~~~~~~i~~~~~vnigvAV~~~~ 221 (347)
T PRK14843 198 LTEDGKTIITHNYVNLAMAVGMDN 221 (347)
T ss_pred EecCCCeEEEecccceEEEEecCC
Confidence 985 4699999999999999984
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.93 E-value=1.8e-25 Score=215.40 Aligned_cols=102 Identities=32% Similarity=0.516 Sum_probs=95.6
Q ss_pred cceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeE
Q 019331 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 241 ~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas 320 (342)
++.+||++||+.||++|++||+++||||++.|||+|+|+++|+++|+.+.+++|+|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 45689999999999999999999999999999999999999999998776667999999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEeecCC
Q 019331 321 IDG--DDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 321 ~d~--~~Iv~~~~vnIGIAV~Tp~ 342 (342)
||+ +.|+++++|||||||||++
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~ 179 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEA 179 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCC
Confidence 985 4799999999999999974
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=99.92 E-value=5e-25 Score=204.71 Aligned_cols=102 Identities=37% Similarity=0.542 Sum_probs=90.8
Q ss_pred CcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCccee
Q 019331 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (342)
Q Consensus 240 ~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNa 319 (342)
..+++|++++||+||++|++||+++||||++.|||+|+|+++|+++|+...+ .+.|+|+++||+||++.||++||.||+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~-~~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEE-PGGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHh-hccCCChhHeeeehHhhhhHHHHHhcc
Confidence 4678999999999999999999999999999999999999999999987653 456999999999999999999999999
Q ss_pred EEeCCe-EEEcCCccEEEEeecCC
Q 019331 320 VIDGDD-IIYRDYIDISFAVGTKK 342 (342)
Q Consensus 320 s~d~~~-Iv~~~~vnIGIAV~Tp~ 342 (342)
+|+++. |+++++|||||||++|+
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~ 105 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPD 105 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETT
T ss_pred ccccccceeeeeeEEEEEEEEcCC
Confidence 999987 99999999999999984
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.85 E-value=1.6e-20 Score=198.10 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=95.2
Q ss_pred CcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCccee
Q 019331 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (342)
Q Consensus 240 ~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNa 319 (342)
..+.+||+|++++||++|..|+. +|++|.+.+||++.|+++|..+|+.+.+.+|.|+|||+||+||++.||++||.+|+
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa 192 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR 192 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence 34678999999999999999975 99999999999999999999999999888999999999999999999999999999
Q ss_pred EEeC--C--eEEEcCCccEEEEeecC
Q 019331 320 VIDG--D--DIIYRDYIDISFAVGTK 341 (342)
Q Consensus 320 s~d~--~--~Iv~~~~vnIGIAV~Tp 341 (342)
+|++ + .|+++++||||||||++
T Consensus 193 sy~~~DGKp~iv~~~~VNlGiAVdl~ 218 (1228)
T PRK12270 193 HYAEVDGKPTLVTPAHVNLGLAIDLP 218 (1228)
T ss_pred eeeccCCCceeeccCCcceEEEEecC
Confidence 9984 3 49999999999999998
No 21
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.81 E-value=5e-20 Score=142.06 Aligned_cols=74 Identities=38% Similarity=0.780 Sum_probs=72.2
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
.+|++|.+|..+++++|.+|++++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999986
No 22
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.78 E-value=7.5e-19 Score=170.24 Aligned_cols=79 Identities=38% Similarity=0.632 Sum_probs=76.0
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..+|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|++..
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999997643
No 23
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.75 E-value=3.9e-17 Score=165.56 Aligned_cols=82 Identities=35% Similarity=0.639 Sum_probs=77.1
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC-EecCCCeEEEEecCC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISKSG 168 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~-~v~vG~~la~i~~~~ 168 (342)
.++|+||+||++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|+|.++++++|+ .|++|++|+.|++++
T Consensus 2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3589999999999999999999999999999999999999999999999999999999999995 799999999998766
Q ss_pred ccc
Q 019331 169 EGV 171 (342)
Q Consensus 169 ~~~ 171 (342)
++.
T Consensus 82 ~~~ 84 (464)
T PRK11892 82 ESA 84 (464)
T ss_pred Ccc
Confidence 543
No 24
>PRK06748 hypothetical protein; Validated
Probab=99.75 E-value=7.9e-18 Score=132.33 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=61.1
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEe-CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIET-DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet-dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.+|++++||+|++|++|+.|++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 39999999999999999999999999 9999999999999999999999999999999999964
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.62 E-value=2.5e-15 Score=114.82 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=60.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
-.|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.+..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999884
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.60 E-value=4.9e-15 Score=113.09 Aligned_cols=72 Identities=35% Similarity=0.637 Sum_probs=69.7
Q ss_pred EEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
|.+|++|.++.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999874
No 27
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.60 E-value=3e-15 Score=156.16 Aligned_cols=78 Identities=44% Similarity=0.775 Sum_probs=75.2
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++||.+|+|.++++++|+.|++|++|+.|+..
T Consensus 2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 2 AFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999754
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.59 E-value=4.4e-15 Score=156.12 Aligned_cols=76 Identities=33% Similarity=0.608 Sum_probs=73.4
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
..+|+||+|| |+||+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++||.|++|++|+.|+.+
T Consensus 2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 3579999999 999999999999999999999999999999999999999999999999999999999999999865
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.53 E-value=5.2e-14 Score=107.04 Aligned_cols=62 Identities=26% Similarity=0.457 Sum_probs=60.3
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|.+|++++||+|++||+|++||+||+.+++.++.+|+|.++++++||.|..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999884
No 30
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.48 E-value=1.3e-13 Score=142.99 Aligned_cols=78 Identities=38% Similarity=0.688 Sum_probs=74.4
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.++|+||++|+ |++|+|++|+|++||.|++||+|++|||||+.++|.|+.+|+|.++++++|+.|.+|++|+.|++.+
T Consensus 2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 36799999999 9999999999999999999999999999999999999999999999999999999999999997543
No 31
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.46 E-value=1.6e-13 Score=118.44 Aligned_cols=62 Identities=34% Similarity=0.559 Sum_probs=60.5
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
-|++.+.+|++||+|++||.||.||.||+.++|+||.+|+|.+|++++||.|..|++|+.|.
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 39999999999999999999999999999999999999999999999999999999999985
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.44 E-value=3.7e-13 Score=139.43 Aligned_cols=75 Identities=32% Similarity=0.626 Sum_probs=72.4
Q ss_pred EEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+|+||+||+. .+|+|++|+|++||.|++||+|++|||||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 6899999987 99999999999999999999999999999999999999999999999999999999999999753
No 33
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.42 E-value=6.3e-13 Score=113.16 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=60.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999987
No 34
>PRK07051 hypothetical protein; Validated
Probab=99.39 E-value=2.4e-12 Score=100.72 Aligned_cols=69 Identities=29% Similarity=0.428 Sum_probs=64.2
Q ss_pred EEEEccCCCCCCCeEEEEE-------EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 91 VDAVVPFMGESITDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
.+|..| ..|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap------~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSP------LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCC------CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 466777 4578888 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 019331 164 IS 165 (342)
Q Consensus 164 i~ 165 (342)
|+
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 35
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.38 E-value=1.6e-12 Score=113.76 Aligned_cols=63 Identities=24% Similarity=0.562 Sum_probs=60.7
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|.
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~ 153 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG 153 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence 559999999999999999999999999999999999999999999999999999999999873
No 36
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.35 E-value=5.3e-12 Score=93.56 Aligned_cols=62 Identities=40% Similarity=0.705 Sum_probs=59.7
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
.+|.|.+|++++||.|++||+|++++++|...+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 46999999999999999999999999999999999999999999999999999999999875
No 37
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.31 E-value=4.9e-12 Score=118.24 Aligned_cols=61 Identities=26% Similarity=0.459 Sum_probs=58.7
Q ss_pred EEEEE-------EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++||.|.+|++|+.|+
T Consensus 206 Gtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 206 GTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 67777 99999999999999999999999999999999999999999999999999999985
No 38
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.29 E-value=3.7e-11 Score=88.57 Aligned_cols=73 Identities=44% Similarity=0.763 Sum_probs=70.4
Q ss_pred EEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
++.+|++|....+|.|.+|+++.|+.|..|++|+.++++|...++.++.+|++.+..+.+|+.+..|++|+.|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999874
No 39
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.27 E-value=1.4e-11 Score=108.30 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=59.1
Q ss_pred eEEEEE-------EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
-|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+|+++.|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 378876 99999999999999999999999999999999999999999999999999999874
No 40
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.23 E-value=2.9e-11 Score=125.95 Aligned_cols=63 Identities=22% Similarity=0.515 Sum_probs=61.2
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.|+|++|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 499999999999999999999999999999999999999999999999999999999999963
No 41
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.23 E-value=3.2e-11 Score=105.83 Aligned_cols=61 Identities=28% Similarity=0.490 Sum_probs=58.2
Q ss_pred EEEEE-------EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
|++.. |+|++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+.|..|++|+.|+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 67766 99999999999999999999999999999999999999999999999999999873
No 42
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.14 E-value=9.6e-11 Score=130.93 Aligned_cols=62 Identities=32% Similarity=0.619 Sum_probs=60.4
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999999884
No 43
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.07 E-value=2.2e-10 Score=119.48 Aligned_cols=58 Identities=22% Similarity=0.436 Sum_probs=56.4
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~l 161 (342)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999975
No 44
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.06 E-value=4.5e-10 Score=117.36 Aligned_cols=62 Identities=23% Similarity=0.454 Sum_probs=60.1
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999873
No 45
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.03 E-value=5e-10 Score=124.39 Aligned_cols=62 Identities=21% Similarity=0.484 Sum_probs=60.3
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 49999999999999999999999999999999999999999999999999999999999884
No 46
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.94 E-value=3.5e-09 Score=110.80 Aligned_cols=63 Identities=27% Similarity=0.553 Sum_probs=60.9
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
..|+|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 358999999999999999999999999999999999999999999999999999999999985
No 47
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.83 E-value=8.7e-09 Score=114.94 Aligned_cols=62 Identities=27% Similarity=0.574 Sum_probs=60.4
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|++|+|++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 49999999999999999999999999999999999999999999999999999999999985
No 48
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.75 E-value=2e-08 Score=102.23 Aligned_cols=61 Identities=23% Similarity=0.426 Sum_probs=60.1
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
|+|+.+.|++|+.|.+||+|+.+|.||+...|.||.+|+|+++.+.+||.|.+|++|+.++
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 49
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.49 E-value=1.5e-07 Score=98.90 Aligned_cols=61 Identities=23% Similarity=0.537 Sum_probs=59.6
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
|+|+++.|++||.|++||+|+.+|.||+...|.||.||+|.+++|..||.|..|+.|..++
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 8999999999999999999999999999999999999999999999999999999999875
No 50
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.45 E-value=3.2e-07 Score=74.09 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=51.2
Q ss_pred eEEEEccCCCCCCCeEEEEE-EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCE
Q 019331 90 LVDAVVPFMGESITDGTLAK-FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~-w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~ 154 (342)
...+-|-+.+..+ =|+|.. |++++||.|++||+|++||++|+..+|.||.+|+|.++..+.++.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3455555544432 467777 777779999999999999999999999999999999988766654
No 51
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.30 E-value=9.7e-07 Score=91.47 Aligned_cols=62 Identities=26% Similarity=0.483 Sum_probs=60.2
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|+++.|++|+.|++||+||.+..+|+.|-|.||.+|+|+++++..|+.+..|+.|++|+
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 39999999999999999999999999999999999999999999999999999999999886
No 52
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.11 E-value=4.3e-06 Score=69.44 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=36.9
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~ 153 (342)
++|+.|++||+|++||++|+..+|.||.+|+|.+++-+..+
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 67999999999999999999999999999999998654443
No 53
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.02 E-value=5.9e-06 Score=83.63 Aligned_cols=61 Identities=26% Similarity=0.489 Sum_probs=58.9
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
|.|.+++||+||.|.+||.|+.++.+|+..-+.||.+|+++.+.++.|++|.-|.+|..++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 7999999999999999999999999999999999999999999999999999999998763
No 54
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.00 E-value=1.2e-05 Score=67.16 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=34.3
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (342)
++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 669999999999999999999999999999999884
No 55
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.00 E-value=1e-05 Score=89.68 Aligned_cols=66 Identities=30% Similarity=0.584 Sum_probs=62.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+.|++++|+|+.|++|..||+-+|||.||+.|.+-++.+|+| +...++|+.+..|++|+.+..++.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence 679999999999999999999999999999999999999999 678899999999999999986553
No 56
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.98 E-value=2.1e-05 Score=76.24 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=32.7
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..|.||++|+|..+.+.+|+.|..|++|+.|.+.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence 468999999999999999999999999999987554
No 57
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.98 E-value=3e-05 Score=78.07 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=58.6
Q ss_pred CeEEEEEEE-ccCCCeeeCCCeEEEEEeC----------------------------------------------c--ee
Q 019331 103 TDGTLAKFL-KQPGDRVEMDEPIAQIETD----------------------------------------------K--VT 133 (342)
Q Consensus 103 ~eg~I~~w~-v~~Gd~V~~gd~l~evetd----------------------------------------------K--a~ 133 (342)
.+|.|.+++ +++||.|++||+|+++++. | ..
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 459999999 9999999999999999841 0 13
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..|.||++|+|.+..+.+|+.|..|++|+.|.+.+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 579999999999999999999999999999986554
No 58
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.94 E-value=2e-05 Score=75.36 Aligned_cols=67 Identities=21% Similarity=0.401 Sum_probs=58.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce--------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (342)
.+|.|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 569999999999999999999999986311
Q ss_pred ---------------------eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 133 ---------------------~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
...|.||.+|+|..+.+.+|+.+..|++|+.|...+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 170 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLDP 170 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCCc
Confidence 2469999999999999999999999999999986543
No 59
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.89 E-value=4.2e-05 Score=74.19 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=58.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999999731
Q ss_pred -------------------eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 132 -------------------VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 132 -------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
....|.||++|+|.++.+++|+.|..|++|+.|.+.+.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 02468999999999999999999999999998876543
No 60
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.85 E-value=2.3e-05 Score=68.15 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=48.4
Q ss_pred EEEEccCCCCCCCeEEEEEEEcc-CCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQ-PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~-~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~ 153 (342)
..|-|-+.+.. .=|+|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++.....+
T Consensus 31 ~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 31 VTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred EEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 44444443332 23667777776 8999999999999999999999999999999998766544
No 61
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.81 E-value=5.1e-05 Score=74.32 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=32.5
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..|.||++|+|.++.+.+|+.|..|++|+.|.+.+.
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~ 244 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDH 244 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCCC
Confidence 368999999999999999999999999999987654
No 62
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.69 E-value=0.00011 Score=62.39 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=45.3
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee---eCCCCEec---CCC-eEEEEecCC
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI---AKEGETVE---PGA-KIAVISKSG 168 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~---~~~G~~v~---vG~-~la~i~~~~ 168 (342)
++|+.|++||+++.||++|+..+|.||.+|+|.++. ....+.+. -|+ -|+.|...+
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 679999999999999999999999999999999994 43334444 444 788887543
No 63
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.66 E-value=0.00014 Score=72.82 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=32.6
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..|.||++|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence 369999999999999999999999999999976554
No 64
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.65 E-value=0.00012 Score=72.80 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=56.4
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.++++++||.|++||+|+.+++.-
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45999999999999999999999998741
Q ss_pred --------------------eeeeeeCCCCeEEEEeeeCCCCEecCC--CeEEEEecCC
Q 019331 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSG 168 (342)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG--~~la~i~~~~ 168 (342)
....|.||++|+|.+.++++|+.|..| ++|+.|...+
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~ 208 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLD 208 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecC
Confidence 124789999999999999999999985 5888887544
No 65
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.62 E-value=0.00011 Score=71.50 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=32.4
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..|.||++|+|..+.+.+|+.|..|++|+.|...+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~~ 239 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTRP 239 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCCc
Confidence 578999999999999999999999999999976543
No 66
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.57 E-value=0.00013 Score=51.85 Aligned_cols=30 Identities=10% Similarity=0.336 Sum_probs=26.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
..|.|.+|+|++||.|++||+|++++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 469999999999999999999999987644
No 67
>PRK12784 hypothetical protein; Provisional
Probab=97.54 E-value=0.00048 Score=53.18 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=58.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC-ceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
-.|+|.+.++.+++.|-++++|+-|+++ +.-..|.--.+|.|.-+.+.+||.+..++.|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 4689999999999999999999999985 5556688899999999999999999999999999753
No 68
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.53 E-value=0.00024 Score=70.69 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=56.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.++++++||.|++||+|++++..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998640
Q ss_pred --------------------eeeeeeCCCCeEEEEeeeCCCCEecCCC--eEEEEecCC
Q 019331 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKSG 168 (342)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG~--~la~i~~~~ 168 (342)
....|.||++|+|.+..+.+|+.|..|+ +|+.|...+
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 206 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLD 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecC
Confidence 1247999999999999999999999985 688776543
No 69
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.51 E-value=0.00028 Score=70.57 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=55.6
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.++++++||.|++||+|++++...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998531
Q ss_pred --------------------eeeeeeCCCCeEEEEeeeCCCCEecCCCe--EEEEecCC
Q 019331 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK--IAVISKSG 168 (342)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG~~--la~i~~~~ 168 (342)
....|.||++|+|.+..+++|+.|..|++ |+.|...+
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 210 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 210 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecC
Confidence 12468999999999999999999999985 67775443
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.49 E-value=0.00017 Score=51.31 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=32.9
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
++.|.+|.+|+|.++++++|+.|+.|++|+.|+...
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 467899999999999999999999999999998654
No 71
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.42 E-value=0.00019 Score=61.06 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=37.1
Q ss_pred ccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC
Q 019331 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~ 153 (342)
.++|+.|++||+++.||++|+..+|.||.+|+|.++.-..-+
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 368999999999999999999999999999999998644433
No 72
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.41 E-value=0.00034 Score=70.56 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=55.1
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
.+|.|.++++++||.|++||+|+++++..
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 56999999999999999999999997631
Q ss_pred --------------------eeeeeeCCCCeEEEEeeeCCCCEecCCC--eEEEEecC
Q 019331 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKS 167 (342)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG~--~la~i~~~ 167 (342)
-...|.||++|+|....+++|+.|..|+ +|+.|...
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~ 231 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecC
Confidence 0236899999999999999999999984 67777543
No 73
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.38 E-value=0.00045 Score=68.31 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=55.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.+|++++||.|++||+|+++++.-
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 45999999999999999999999998731
Q ss_pred ----------------------------------eeeeeeCCCCeEEEEeeeCCCCEecCC---CeEEEEecCC
Q 019331 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPG---AKIAVISKSG 168 (342)
Q Consensus 132 ----------------------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG---~~la~i~~~~ 168 (342)
....|.||++|+|..+.+..|+.|..| ++|+.|...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 221 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecCC
Confidence 013689999999999999999999766 4788886544
No 74
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.35 E-value=0.00022 Score=68.31 Aligned_cols=65 Identities=18% Similarity=0.434 Sum_probs=48.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
.+|.| +|+|++||.|++||+|++++++.
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 46999 99999999999999999999841
Q ss_pred ----------------eee----------eeeCCCCeEEE-------------------------EeeeCCCCEecCCCe
Q 019331 132 ----------------VTI----------DVASPQAGVIQ-------------------------NLIAKEGETVEPGAK 160 (342)
Q Consensus 132 ----------------a~~----------ei~ap~~G~l~-------------------------~i~~~~G~~v~vG~~ 160 (342)
... .|.||++|+|. .+.+.+|+.+..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 011 39999999999 999999999999999
Q ss_pred EEEEecCC
Q 019331 161 IAVISKSG 168 (342)
Q Consensus 161 la~i~~~~ 168 (342)
|+.|....
T Consensus 187 l~~i~~~~ 194 (328)
T PF12700_consen 187 LFTIADLS 194 (328)
T ss_dssp SEEEEEES
T ss_pred eeeeccCC
Confidence 99997654
No 75
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.19 E-value=0.00089 Score=64.86 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.8
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
.|.||++|+|..+.+.+|+.|.. ++|+.|...+.
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~~ 239 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTSQ 239 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCCc
Confidence 56799999999999999999986 78888876443
No 76
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=97.17 E-value=0.0023 Score=58.83 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=56.6
Q ss_pred CccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCC-eEEEcCCccEEEEeec
Q 019331 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD-DIIYRDYIDISFAVGT 340 (342)
Q Consensus 263 ~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~-~Iv~~~~vnIGIAV~T 340 (342)
.-|+++++.++|+|+|.+..++ . +++|.+.++-++.+|+.++|+|.=+++++ ++++++.+|.+..|-.
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~--------~--~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKE--------K--GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHH--------T--T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCceEecceeEEhHHHHHHHHH--------c--CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 4589999999999999976543 1 57899999999999999999999999987 9999999999988753
No 77
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.12 E-value=0.00096 Score=56.32 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=31.7
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeC
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~ 150 (342)
++|+.|++|++++.||++|...++.||.+|+|.++.-.
T Consensus 40 ~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 40 KVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp -TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred cCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 66899999999999999999999999999999888533
No 78
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.97 E-value=0.0024 Score=60.27 Aligned_cols=60 Identities=33% Similarity=0.534 Sum_probs=52.1
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|.. ++.+|-.|..|.-|+.|++-++
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCCC
Confidence 3444 459999999999999999975 7999999999965 6789999999999999997664
No 79
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0018 Score=55.17 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=34.3
Q ss_pred ccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee
Q 019331 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (342)
.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 3778899999999999999999999999999998775
No 80
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.69 E-value=0.0034 Score=47.58 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=31.5
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.|.||++|+|.++++++||.|+.|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5899999999999999999999999999998654
No 81
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.47 E-value=0.0066 Score=56.59 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=32.1
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+.|.||++|+|..+.+.+|+.+..|++|+.|.+.+.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~ 124 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLGA 124 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCc
Confidence 357999999999999999999999999999876543
No 82
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.43 E-value=0.01 Score=58.83 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=29.5
Q ss_pred eeeCCCCeEEEEeee-CCCCEecCCCeEEEEecC
Q 019331 135 DVASPQAGVIQNLIA-KEGETVEPGAKIAVISKS 167 (342)
Q Consensus 135 ei~ap~~G~l~~i~~-~~G~~v~vG~~la~i~~~ 167 (342)
.|.||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 478999999999876 799999999999999764
No 83
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=96.15 E-value=0.018 Score=53.41 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=57.1
Q ss_pred cEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeec
Q 019331 265 ALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGT 340 (342)
Q Consensus 265 Ph~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~T 340 (342)
|.|.++.++|+|+|++.-++ . +++|.+.++-|+.+|+.++|+|-=+++++++++++.+|.+..|-.
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~--------~--~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~ 96 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKK--------N--KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFH 96 (219)
T ss_pred CceEEEEEEEHHHHHHHHHH--------c--CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEe
Confidence 45999999999999965432 1 578999999999999999999999999999998899999988753
No 84
>PRK06748 hypothetical protein; Validated
Probab=96.12 E-value=0.01 Score=46.82 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=30.7
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-|.||..|.|.++++++||.|..|++|+.|+.
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 47899999999999999999999999999998
No 85
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.11 E-value=0.019 Score=55.54 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=47.9
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe---CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet---dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
+=+...+++.||.|++||+|++|=. +....++.||.+|+|.- ....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 4467788999999999999999964 45678899999999955 4466788999999876
No 86
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.01 E-value=0.01 Score=51.30 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=32.3
Q ss_pred eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
....|.||..|++.++++++||.|+.||.||+|+.
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 34679999999999999999999999999999985
No 87
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.93 E-value=0.013 Score=48.01 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=39.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (342)
.-|.-.+-.|++||.|.+||.|++.+ +-....|-|+.+|+|..|.
T Consensus 37 h~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 37 HIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred cCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 44666778999999999999999997 4668899999999999984
No 88
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.92 E-value=0.015 Score=42.40 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=30.3
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+.||++|+|.++++++|+.|+.|++|+.++..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 368999999999999999999999999999753
No 89
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.85 E-value=0.026 Score=56.10 Aligned_cols=59 Identities=24% Similarity=0.434 Sum_probs=47.3
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEe----CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
.|=+.+++++.||.|++||+|++|-+ +....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence 35577899999999999999999854 3445557999999995 45577788899998876
No 90
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.74 E-value=0.022 Score=42.84 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.4
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.|.||.+|.|.++++++||.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5789999999999999999999999999998654
No 91
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.63 E-value=0.042 Score=52.81 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=45.5
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe--CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
+=+.++.++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence 3456689999999999999999964 23347899999999954 4466678888888876
No 92
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.63 E-value=0.039 Score=54.71 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=31.7
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
.+|.||.+|+|.+..+.+|+.|..|++|+.+-+.+.
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~ 244 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS 244 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence 447999999999999999999999999998876443
No 93
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.47 E-value=0.055 Score=52.75 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=46.7
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe----CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.-. ...-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEEe
Confidence 4577889999999999999999864 345678999999999644 3445688888888774
No 94
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=95.45 E-value=0.02 Score=54.21 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=39.6
Q ss_pred EccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCce--eeeeeCCCCeEEEEeeeCC
Q 019331 94 VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKE 151 (342)
Q Consensus 94 ~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--~~ei~ap~~G~l~~i~~~~ 151 (342)
.+|+=-.+|. -+.+|+|||+|+.||+|++ ||- .+-+.||.+|+|.+|.-.+
T Consensus 31 l~~~Df~g~~----Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 31 LLPDDFPGMK----PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred EcCcccCCCC----ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 3444444444 4889999999999999996 665 4668999999999987633
No 95
>PRK07051 hypothetical protein; Validated
Probab=95.28 E-value=0.041 Score=42.73 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=24.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (342)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 68999999999999999999999985
No 96
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.19 E-value=0.062 Score=52.75 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=46.6
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe----CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
+=+....++.||.|++||+|++|=. .....+|.||.+|+|.-+ ...-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~--~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR--HFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE--eCCCccCCCCEEEEe
Confidence 3456788999999999999999964 234678999999999654 466688889988876
No 97
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.94 E-value=0.046 Score=43.87 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=25.5
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+|.||++|+|..+.+++|+.+..|++|+.|...+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccc
Confidence 3677888888888778888888888888777643
No 98
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.73 E-value=0.058 Score=46.17 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=32.7
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
...|.||.+|+|.++++.+||.|..|++|+.++..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam 95 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM 95 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 56799999999999999999999999999999864
No 99
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.72 E-value=0.058 Score=52.90 Aligned_cols=62 Identities=27% Similarity=0.484 Sum_probs=48.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC---ceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD---KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd---Ka~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
+++=+++.+++.||.|++||.|+.|-+- +...||.|+.+|+|.... ---.++.|+.++++..
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~~ 326 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVGR 326 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeecc
Confidence 3566889999999999999999988764 789999999999997764 2234555666666553
No 100
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.49 E-value=0.085 Score=50.69 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=37.3
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe--CceeeeeeCCCCeEEEEeeeCCCCEecCCCeE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~l 161 (342)
+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 4467778888888888888888832 2345678888888885543 33345555544
No 101
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=94.20 E-value=0.076 Score=40.54 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=29.1
Q ss_pred eeeCCCCeEEEE------eeeCCCCEecCCCeEEEEecCCc
Q 019331 135 DVASPQAGVIQN------LIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 135 ei~ap~~G~l~~------i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+|.+|..|.+.+ +++++||.|..|++|+.|+....
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCcc
Confidence 567777776555 99999999999999999987543
No 102
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.19 E-value=0.17 Score=57.52 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCceEEEEccCCCCCCCe----------EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEec
Q 019331 87 SGDLVDAVVPFMGESITD----------GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVE 156 (342)
Q Consensus 87 ~~~~~~i~mP~lGe~m~e----------g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~ 156 (342)
.|....|++-.+|+.-.+ |...++.+++|+.+..++.....+.+ -..+|.||..|.|.++++++||.|+
T Consensus 1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235 1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeC
Confidence 355556666677754333 35666778888877776665444322 2357999999999999999999999
Q ss_pred CCCeEEEEecC
Q 019331 157 PGAKIAVISKS 167 (342)
Q Consensus 157 vG~~la~i~~~ 167 (342)
.|++|+.|+..
T Consensus 1098 ~Gd~L~~iEam 1108 (1143)
T TIGR01235 1098 KGDPLVVLEAM 1108 (1143)
T ss_pred CCCEEEEEEec
Confidence 99999999864
No 103
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.17 E-value=0.044 Score=51.82 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=24.7
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.++..|+|.+|++++|+.|+.|++|+.|++..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 57889999999999999999999999999998643
No 104
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.04 E-value=0.092 Score=51.43 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.5
Q ss_pred EEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 126 evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.|+.+ .+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 43 YIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 34444 67889999999999999999999999999999864
No 105
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.86 E-value=0.1 Score=45.83 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=32.1
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
...|.||..|+|.++++++||.|..|++|+.++..
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence 35699999999999999999999999999999754
No 106
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.72 E-value=0.079 Score=51.25 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=32.6
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+.|.++.+|+|.++++++||.|+.|++|+.|+...
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence 678899999999999999999999999999998643
No 107
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.50 E-value=0.12 Score=50.03 Aligned_cols=43 Identities=26% Similarity=0.504 Sum_probs=36.0
Q ss_pred EEEeCceeeeeeCCCC---eEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 126 QIETDKVTIDVASPQA---GVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 126 evetdKa~~ei~ap~~---G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.|+...-...|.++.+ |+|.+|++++||.|+.|++|+.|+...
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 3444444567889999 999999999999999999999998754
No 108
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.30 E-value=0.062 Score=50.79 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=20.7
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..|.|.+++|++||.|++||+|++++.-
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 4599999999999999999999999964
No 109
>PF13437 HlyD_3: HlyD family secretion protein
Probab=93.01 E-value=0.26 Score=39.43 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=25.9
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
.+|.|..|.+++|+.|.+|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 6799999999999999999999999853
No 110
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.81 E-value=0.23 Score=50.16 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=47.8
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.|.-..++.|+.-..-+....|+.. -.+.|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 3444455566544444556677763 5678999999999999999999999999999998643
No 111
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=92.71 E-value=0.16 Score=44.43 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=35.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceee-eeeCCCCeEEEEee
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLI 148 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~ 148 (342)
.||..+-..+.+||+|.+||.|+-+.|-|-.+ -+.||++|+|.-+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 57888889999999999999999999999974 58999999996654
No 112
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=92.66 E-value=0.28 Score=48.45 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=43.6
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+.-+.++.|+....=..-..|+... ...|.++.+|.|.++++++|+.|+.|++|+.|+..
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 34444555555333223334555443 45899999999999999999999999999999753
No 113
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=92.42 E-value=0.14 Score=48.95 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=25.4
Q ss_pred eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
-+..+.++.+|.| ++++++|+.|..|++|+.++..
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 4567899999999 9999999999999999999864
No 114
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.41 E-value=0.28 Score=48.84 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=43.2
Q ss_pred EccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.++.|+....-+....|+... ..+|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 334444444444556666553 67899999999999999999999999999999864
No 115
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=92.41 E-value=0.13 Score=52.57 Aligned_cols=45 Identities=22% Similarity=0.421 Sum_probs=38.1
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeee
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (342)
.|.-.+-.|++||+|..||+|++-... ..+-+-||.+|+|..|.-
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 466668899999999999999986633 578899999999999953
No 116
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=92.28 E-value=0.17 Score=48.25 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.4
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 56899999999999999999999999999999754
No 117
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=92.25 E-value=0.16 Score=49.22 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=32.0
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.|.++.+|.|.++++++||.|+.|++|+.|+..+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence 45899999999999999999999999999998643
No 118
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.21 E-value=0.26 Score=50.30 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=35.0
Q ss_pred EEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 127 IETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 127 vetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
|..+.-...|.++..|+|.+|+|++||.|+.|++|+.++...
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 333444567889999999999999999999999999998643
No 119
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.18 E-value=0.59 Score=49.60 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
-+|.||..|.|.++++++||.|+.|++|+.++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 36999999999999999999999999999998643
No 120
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.93 E-value=0.28 Score=48.66 Aligned_cols=43 Identities=14% Similarity=0.383 Sum_probs=34.7
Q ss_pred EEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 126 evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.|..+.....|.++.+|+|.++++++||.|+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 3445666666889999999999999999999999999997643
No 121
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=91.89 E-value=0.39 Score=44.03 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=60.2
Q ss_pred cCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecC
Q 019331 262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK 341 (342)
Q Consensus 262 ~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV~Tp 341 (342)
...||+-...+.|+|.+-. -+|+ . +++|.++++-|+.+++.++++|-=++.++...+++.++..+.|.++
T Consensus 26 ~~~p~y~i~~~LDvtn~~~---~vk~----~---~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~ 95 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYG---YVKE----N---GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG 95 (219)
T ss_pred cccceEeeeeeeehhHHHH---HHHH----c---CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence 4579999999999887654 3432 1 7899999999999999999999999999999999999999888764
No 122
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.78 E-value=0.19 Score=50.31 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=31.8
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+.|.++.+|.|.++++++||.|+.|++|+.|+..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 77889999999999999999999999999999864
No 123
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=91.76 E-value=0.19 Score=38.80 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=21.2
Q ss_pred EEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
=+.++++.||.|++||+||+|=++.-
T Consensus 33 Gi~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 33 GIELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp EEEESS-TTSEEBTTSEEEEEEESSS
T ss_pred CeEecCcCcCEECCCCeEEEEEcCCh
Confidence 35789999999999999999987643
No 124
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=91.56 E-value=0.36 Score=48.05 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=41.9
Q ss_pred EccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.++.|+.-..-.....|+.+ -..+|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 33444433333344566654 356899999999999999999999999999999764
No 125
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.54 E-value=0.29 Score=49.32 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=32.3
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
...|.++.+|+|.++++++||.|+.|++|+.|+...
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 448899999999999999999999999999998654
No 126
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.47 E-value=0.31 Score=42.81 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=24.6
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (342)
.+|+|.+|+++.||.|..||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 68999999999999999999999985
No 127
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=91.39 E-value=0.22 Score=49.22 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=34.1
Q ss_pred EEEccCCCeeeCCCeEEEEEeCce--eeeeeCCCCeEEEEeeeCCC
Q 019331 109 KFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKEG 152 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa--~~ei~ap~~G~l~~i~~~~G 152 (342)
..+|++||.|++||+|+| ||- -+-++||.+|+|..|+-.+-
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~K 84 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEK 84 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccc
Confidence 568999999999999998 554 47799999999999874443
No 128
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.24 E-value=0.27 Score=47.74 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=32.5
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+.|.++..|+|.++++++||.|+.|++|+.|+..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 56899999999999999999999999999999754
No 129
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=91.19 E-value=0.2 Score=51.36 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=37.5
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeee
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (342)
-|.-.+-.|++||+|.+||+|++-... .+..+-||.+|+|..|..
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 355667899999999999999965543 468899999999999953
No 130
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=91.14 E-value=0.33 Score=42.74 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=24.6
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (342)
.+|+|.+|+++.||.|..||+|++|+
T Consensus 131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 131 VAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 68999999999999999999999985
No 131
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=90.84 E-value=0.35 Score=49.70 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=26.4
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
.+|+|.+|++++||.|..|++|+.|+.+
T Consensus 141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 141 ASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 7899999999999999999999999864
No 132
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=90.54 E-value=0.45 Score=45.90 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=31.4
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
..+|..| .+|+|.++++++||.|..|++|+.++++.
T Consensus 45 ~~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 3556666 78999999999999999999999999765
No 133
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.26 E-value=0.45 Score=45.36 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (342)
.+|+|.+|++++||.|..||+|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 68999999999999999999999986
No 134
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=89.97 E-value=0.41 Score=47.94 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=36.3
Q ss_pred EEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 125 AQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 125 ~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|+. .-..+|.++.+|+|.++++++||.|+.|++|+.|+..+
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 34543 33678999999999999999999999999999998643
No 135
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.83 E-value=1 Score=43.49 Aligned_cols=40 Identities=15% Similarity=0.408 Sum_probs=21.9
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe--CceeeeeeCCCCeEEEE
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQN 146 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~ 146 (342)
|.+..++.||.|++||+|++|-. .....++.||.+|+|.-
T Consensus 241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~ 282 (293)
T cd06255 241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIG 282 (293)
T ss_pred EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEE
Confidence 44555666666666666666642 11134456666666643
No 136
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=89.66 E-value=0.34 Score=49.33 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=36.5
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (342)
|.-.+-.|++||+|+.||+|++.+ +.....+-||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444567999999999999999983 4468899999999999875
No 137
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.25 E-value=0.36 Score=48.69 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=26.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..|.|.+.+|++||.|++||+|+++++.
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 5699999999999999999999999985
No 138
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=88.88 E-value=0.88 Score=33.98 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=28.0
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEE
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~ev 127 (342)
...++.-| .+|+|++|+++.|+.|..|+.|+.|
T Consensus 41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 34566666 7899999999999999999999875
No 139
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=88.79 E-value=0.4 Score=37.86 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=18.7
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
=++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 45699999999999999999984
No 140
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=88.73 E-value=0.9 Score=45.86 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=37.3
Q ss_pred eEEEEEeCc-eeeeeeCCCCeEEEEee-eCCCCEecCCCeEEEEecC
Q 019331 123 PIAQIETDK-VTIDVASPQAGVIQNLI-AKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 123 ~l~evetdK-a~~ei~ap~~G~l~~i~-~~~G~~v~vG~~la~i~~~ 167 (342)
....|+-|. -...|.++.+|+|.+++ +.+||.|+.|++|+.|...
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 345666543 35689999999999998 8999999999999999854
No 141
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=88.58 E-value=1.4 Score=41.95 Aligned_cols=59 Identities=31% Similarity=0.431 Sum_probs=47.7
Q ss_pred EEEEEEEccCCCeeeCCCeE--EEEE-eC-ceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 105 GTLAKFLKQPGDRVEMDEPI--AQIE-TD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l--~eve-td-Ka~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
+=+..+.++.||.|++||+| .++- .. -...++.+|.+|+| +...+.-.|..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 45668999999999999999 5443 22 33468999999999 5677888999999999875
No 142
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=88.46 E-value=0.41 Score=51.65 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=36.4
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (342)
-|.-.+-+|++||+|.+||+|++-+ .-.+..|-||.+|+|..|.
T Consensus 45 iG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 45 IGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 3555678999999999999999664 3357889999999999874
No 143
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=88.24 E-value=1.9 Score=42.90 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=26.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..|+|.+.+|++||+|+.|+.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 5699999999999999999999999976
No 144
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=88.15 E-value=0.4 Score=42.30 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=36.6
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~ 153 (342)
++|-.|.+||.+.-||+=|+.-||.+|.+|.|.+|.-+-.|
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 68889999999999999999999999999999998654433
No 145
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.66 E-value=0.49 Score=48.29 Aligned_cols=28 Identities=4% Similarity=0.115 Sum_probs=25.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..|.|.+++|++||.|++||+|+.++..
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 4599999999999999999999999875
No 146
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=87.51 E-value=1.5 Score=41.37 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=31.7
Q ss_pred eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-..++.++..|.|.++++++||.|+.|++|+.++.
T Consensus 65 ~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 65 RSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 33478888999999999999999999999999987
No 147
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=87.14 E-value=0.85 Score=48.30 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.5
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||..|.|.++++++||.|..|++|+.|+...
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 47999999999999999999999999999998654
No 148
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=86.95 E-value=0.99 Score=45.92 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=26.9
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
.+|+|.++++++||.|..|++|+.|+++.
T Consensus 94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 94 ASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 78999999999999999999999998653
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=86.47 E-value=2 Score=45.65 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.4
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
...|.||.+|+|.++.+++|+.|+.|++|+.++..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 36799999999999999999999999999999854
No 150
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=86.16 E-value=1.6 Score=30.92 Aligned_cols=31 Identities=42% Similarity=0.619 Sum_probs=25.9
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEE
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~ev 127 (342)
..+..| ..|+|.++++++|+.+..|++|+++
T Consensus 44 ~~i~a~------~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAP------AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECC------CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 455555 5688999999999999999999875
No 151
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=85.40 E-value=1.2 Score=47.42 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=32.6
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..+|.||..|.|.++++++||.|..|++|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 457999999999999999999999999999997543
No 152
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=85.39 E-value=0.78 Score=43.41 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=25.9
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
..|.|.+++|++||.|++||+|+.+++
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 579999999999999999999999998
No 153
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.79 E-value=1.9 Score=37.09 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=39.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeee-eeCCCCeEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQN 146 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~e-i~ap~~G~l~~ 146 (342)
.||-++.-....|+.|.+||+++-|.|-|..+- +.+|.+|++.-
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvy 142 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVY 142 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEE
Confidence 689999999999999999999999999999765 78999998853
No 154
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=84.56 E-value=1.2 Score=46.60 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=31.2
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.-.+.||..|+|..+.+++|++|..|++|++++.
T Consensus 575 ~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 575 SGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CCceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 3458999999999999999999999999999985
No 155
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=84.37 E-value=1.7 Score=43.97 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=27.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
.+|+|.++++++||.|..|++|++|+++.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 52 AAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 78999999999999999999999999754
No 156
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=83.04 E-value=1.5 Score=44.35 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=26.6
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
.+|+|.++++++||.|..|++|++|+.+
T Consensus 50 ~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 50 ADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 7899999999999999999999999865
No 157
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=82.85 E-value=2.7 Score=38.48 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=41.3
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCC-eEEE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGA-KIAV 163 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~-~la~ 163 (342)
+.|.. ++++||.+++||.+.-++-- .++++--|.+ .++.+++||.|..|+ +|+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 45555 46899999999999999976 4555555554 278999999999998 5554
No 158
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.24 E-value=3.3 Score=47.33 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=31.8
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+|.||..|+|.++++++||.|+.|++|+.++..
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leam 1110 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAM 1110 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 5699999999999999999999999999999854
No 159
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=81.51 E-value=1.3 Score=37.50 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.8
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+|+=-++++++||+|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3566789999999999999999998654
No 160
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=81.47 E-value=4.3 Score=43.56 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=30.2
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-.|-||..|+|.+|.+++|+.|+.|++|+++..
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSA 1139 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeeec
Confidence 347899999999999999999999999999874
No 161
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=81.45 E-value=1.3 Score=45.93 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=35.5
Q ss_pred EEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee
Q 019331 108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (342)
...+|++||.|.+||+|.+=+. -..-+-||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5679999999999999998875 78889999999999996
No 162
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=81.38 E-value=1.9 Score=43.75 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCeEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
...+|+|.+|++++||.|..|++|++|+++..
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 77 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVEDS 77 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccCC
Confidence 34789999999999999999999999987653
No 163
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=80.87 E-value=2.1 Score=49.17 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.7
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||..|.|.++++++||.|+.|++|+.|+...
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 45899999999999999999999999999997643
No 164
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.41 E-value=3.1 Score=36.68 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.0
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
|+--+-++++||.|++||+|+++.-|..
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 6667789999999999999999987643
No 165
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=80.17 E-value=3.7 Score=37.08 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=40.1
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~l 161 (342)
+.|..| +++|+.+++||.+.-++-- .++++--|.+ .++.+++|+.|..|+.|
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tl 181 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETV 181 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEE
Confidence 455444 5899999999999999976 5555555654 27789999999999955
No 166
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=80.14 E-value=1.5 Score=37.04 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.4
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+|+=-++++++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3555789999999999999999998654
No 167
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=79.21 E-value=1.2 Score=38.12 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=21.9
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
+|.--+|++++||+|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 35667899999999999999999986654
No 168
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=78.95 E-value=2.5 Score=42.77 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=28.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCcee
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~ 133 (342)
.+|+|.+.++++||.|..|++|+.++++-..
T Consensus 52 ~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~ 82 (404)
T COG0508 52 DAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82 (404)
T ss_pred CCeEEEEEeccCCCEEcCCCeEEEEecCCCc
Confidence 7899999999999999999999999987543
No 169
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=78.22 E-value=3.2 Score=41.35 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=32.2
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+.|-+..+|+|.++.+..++.|+.|++|+.|++.+
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHH
Confidence 356788999999999999999999999999998653
No 170
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=78.07 E-value=3.7 Score=36.69 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.9
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+|+=-+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 3566789999999999999999998754
No 171
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=77.34 E-value=5.7 Score=35.49 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEeeeCCCCEecCCCeEEEEec
Q 019331 145 QNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 145 ~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-+.++++||.|+.|++|+.++.
T Consensus 104 F~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 104 FKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred eEEEecCCCEEeCCCEEEEEcH
Confidence 3667899999999999999974
No 172
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=74.64 E-value=4.1 Score=41.66 Aligned_cols=29 Identities=38% Similarity=0.643 Sum_probs=26.9
Q ss_pred CeEEEEEEEccCCCe-eeCCCeEEEEEeCc
Q 019331 103 TDGTLAKFLKQPGDR-VEMDEPIAQIETDK 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~-V~~gd~l~evetdK 131 (342)
.+|+|.+|++++||. |..|++|++|+.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 679999999999999 99999999998754
No 173
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=74.51 E-value=5.1 Score=36.36 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=47.0
Q ss_pred EEccCCCCCCCeEEEEEEEc-cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 93 AVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
+.|=.+|.. .=|.|+-|.. ++|+.|++||.+.-++= =.++.+--|.+- +.++.+++|+.|..|+.|++
T Consensus 134 v~~v~Vga~-~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGAL-LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEEEEeccc-eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCEEEeeeEEeC
Confidence 344445542 3466666665 69999999999999886 444444333332 22889999999999999863
No 174
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=73.98 E-value=3.4 Score=44.24 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=22.7
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+|+=-++++++||+|++||+|++++-|+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 3455588999999999999999998754
No 175
>PRK12784 hypothetical protein; Provisional
Probab=73.97 E-value=4.7 Score=31.47 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.1
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+|.||+-|+|.++++.+++.|..=++|+.|..-+.
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 58999999999999999999999999999986544
No 176
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=73.03 E-value=3.6 Score=43.85 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=15.4
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
|+=-+.+|++||+|++||+|+++.-|
T Consensus 543 g~gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 543 GEGFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CCCeEEEecCcCEEcCCCEEEEecHH
Confidence 34445666666666666666666544
No 177
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=72.74 E-value=8.8 Score=42.14 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=30.5
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-.|-||..|+|.++.+++|+.|+.|++|+.|+.
T Consensus 1080 ~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1080 GHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred cccCCCCCCceEEEEEccCCeecCCCeeeehhh
Confidence 348899999999999999999999999999974
No 178
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=70.66 E-value=5.4 Score=41.14 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=26.5
Q ss_pred CCeEEEEEEEccCCC-eeeCCCeEEEEEeCc
Q 019331 102 ITDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd-~V~~gd~l~evetdK 131 (342)
..+|+|.++++++|| .|+.|++|+.++.+.
T Consensus 51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 478999999999995 799999999998643
No 179
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=70.17 E-value=4.3 Score=39.05 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
--..|++++||.|++||.|++++-+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 3458999999999999999988843
No 180
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=68.99 E-value=8.4 Score=38.84 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=27.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
.+|+|.++++++||.|..|++|++++.+..
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 689999999999999999999999987653
No 181
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=67.86 E-value=6.9 Score=42.07 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
+|+=-+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 35556788899999999999988887643
No 182
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=65.78 E-value=8 Score=36.84 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=29.6
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
..-|.||++|++.. .++-||.|+.|++|+.|..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45689999999966 8999999999999999964
No 183
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.69 E-value=6.9 Score=37.67 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.7
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++|+.|++||+|++++-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6889999999999988888874
No 184
>PRK02693 apocytochrome f; Reviewed
Probab=64.16 E-value=21 Score=34.38 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=44.5
Q ss_pred cccccCCCchhhhhhhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCce---
Q 019331 56 NYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKV--- 132 (342)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--- 132 (342)
+|.-+.+++.-+-.+++++.++...-+.++ ..|+|.++...+ +|.-...|+|+.-
T Consensus 173 KY~iyvGgNRGRGQvYP~G~kSNN~v~~as-----------------~~G~i~~I~~~e-----~Gg~~vtI~~~dG~~v 230 (312)
T PRK02693 173 KYSVHVGGNRGRGQVYPTGEKSNNNVFTAS-----------------AAGTITSIETGE-----DGGYVVTITTEDGEAV 230 (312)
T ss_pred cccEEEcccCCccccCCCCccccCceeccc-----------------CCcEEEEEEecC-----CCceEEEEEcCCCCEE
Confidence 444444444444444555554444444333 456676666543 2444555555432
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
+-.|++- .++.+++||.|+.|++|-.
T Consensus 231 ~~~iP~G-----peliV~eG~~v~~dqpLTn 256 (312)
T PRK02693 231 TETIPAG-----PELIVKEGDTVEAGDPLTN 256 (312)
T ss_pred EEecCCC-----CeEEEecCcEEecCCcccC
Confidence 2223331 2678999999999998853
No 185
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=64.13 E-value=7.9 Score=36.98 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=19.3
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
++--++|++++||.|++||+|++++-
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEE
Confidence 35556788888888888888887773
No 186
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=63.09 E-value=7.9 Score=40.74 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCeEEEEEEEccCCC-eeeCCCeEEEEEeC
Q 019331 102 ITDGTLAKFLKQPGD-RVEMDEPIAQIETD 130 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd-~V~~gd~l~evetd 130 (342)
..+|+|.++++++|| .|..|++|+.+..+
T Consensus 161 ~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 161 MEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 368999999999996 79999999988543
No 187
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=62.52 E-value=17 Score=39.16 Aligned_cols=43 Identities=33% Similarity=0.436 Sum_probs=30.7
Q ss_pred CCeEEEEEeCceeeeeeCCCCeEEEEee-----------------------------------eCCCCEecCCCeEEEEe
Q 019331 121 DEPIAQIETDKVTIDVASPQAGVIQNLI-----------------------------------AKEGETVEPGAKIAVIS 165 (342)
Q Consensus 121 gd~l~evetdKa~~ei~ap~~G~l~~i~-----------------------------------~~~G~~v~vG~~la~i~ 165 (342)
||-++..=+| -+|.||++|+|..+. +++||.|+.||+|+.++
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 6666666555 477788888776543 67888888888888876
Q ss_pred c
Q 019331 166 K 166 (342)
Q Consensus 166 ~ 166 (342)
.
T Consensus 603 ~ 603 (648)
T PRK10255 603 L 603 (648)
T ss_pred H
Confidence 4
No 188
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.48 E-value=8.5 Score=37.17 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
.=++|++++||.|++||+|++++-
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEe
Confidence 356899999999999999888874
No 189
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.34 E-value=12 Score=36.09 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.0
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
..-+.||..|++ +..++.|+.|..|++|+.|.+.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp 264 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDL 264 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 556899999999 5778999999999999999764
No 190
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=60.51 E-value=9 Score=36.69 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.6
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
--++|++++|+.|++||+|++++-
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 345788888888888888888774
No 191
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=60.46 E-value=16 Score=45.08 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=17.9
Q ss_pred EEEccCCCeeeCCCeEEEEE
Q 019331 109 KFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~eve 128 (342)
..+|++|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999864
No 192
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.25 E-value=9.2 Score=36.82 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++|+.|++||+|++++-
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 7899999999999998888874
No 193
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=60.25 E-value=7.2 Score=39.96 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=19.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (342)
+-+.=+.|+++.||.|++||+|+.|=
T Consensus 377 D~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 377 DYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEE
Confidence 33344578888888888888888877
No 194
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=60.24 E-value=9.1 Score=37.02 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=17.9
Q ss_pred EEEEEccCCCeeeCCCeEEEEE
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~eve 128 (342)
=++|++++||.|++||+|++++
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 3688888888888888888776
No 195
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=59.41 E-value=9.7 Score=36.32 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
+-=++|++++|+.|++||+|++++-+
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEc
Confidence 44467999999999999999888843
No 196
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=59.29 E-value=7.7 Score=39.81 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCCeEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 101 SITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
-++-+-=++++++.||.|++||+||.|=.
T Consensus 376 ~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 376 PIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 34444446889999999999999998873
No 197
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=59.26 E-value=35 Score=26.60 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=34.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|+|+.+...+ ...-...|+...-...+-. -|..+.+++||.|+.|+.|+.+...+
T Consensus 20 ~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~----~l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 20 ADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYG----HLDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SSEEEEEEEEET-----TTEEEEEEEETTSEEEEEE----EESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred ccEEEEEEEecc-----CCccEEEEEeCCcCCEEEe----ccccccceecccccCCCEEEecCCCC
Confidence 678888777643 2344555555443222222 25566788999999999999998544
No 198
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=58.69 E-value=8.5 Score=39.42 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCeEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
++-+.=+.++++.||.|++||+|+.|-+|+.
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~ 402 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANRE 402 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCChH
Confidence 3444446889999999999999999887653
No 199
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=58.66 E-value=13 Score=35.89 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=29.8
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
..-+.||.+|.+ ...++.||.|+.|++|+.|-+.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCC
Confidence 567899999999 5568999999999999999864
No 200
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=58.49 E-value=20 Score=34.14 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=41.0
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
..|..|.. +|+.|++||.+..++=- .++.+--|. |.+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 34555654 49999999999998874 455544443 333 6778999999999999754
No 201
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=58.46 E-value=10 Score=36.92 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=14.8
Q ss_pred EEEEccCCCeeeCCCeEEEEE
Q 019331 108 AKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~eve 128 (342)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 467777777777777777666
No 202
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.78 E-value=11 Score=36.60 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=19.8
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
.-.+|++++|+.|++||+|++++-
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEEE
Confidence 345799999999999999998874
No 203
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.52 E-value=11 Score=36.69 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=25.6
Q ss_pred EeEEechHHHHHHHHHHHHHhhhCCCcc-chHHHHHHHHHHHHhhCCccee
Q 019331 270 FNEVDMTNLMKLRSDYKDAFLEKHGVKL-GLMSGFVKAAVSALQHQPVVNA 319 (342)
Q Consensus 270 ~~EvDvt~L~~lR~~lk~~~~~~~gvKl-S~~~fiiKAva~AL~~~P~lNa 319 (342)
..||.++.|.++.+.++... ..+-| .+.+=-+|.++..++....+-+
T Consensus 207 kIeVEvetleea~eA~~aGa---DiImLDnmspe~l~~av~~~~~~~~lEa 254 (294)
T PRK06978 207 PVQIEVETLAQLETALAHGA---QSVLLDNFTLDMMREAVRVTAGRAVLEV 254 (294)
T ss_pred cEEEEcCCHHHHHHHHHcCC---CEEEECCCCHHHHHHHHHhhcCCeEEEE
Confidence 47788888888887765321 11211 3444455666655654444333
No 204
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=57.50 E-value=9.1 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCCCCCeEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 98 lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
+|--++-+-=+.++++.||.|++||+|+.|-.
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 44455656667899999999999999999874
No 205
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.15 E-value=11 Score=36.19 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++|+.|++||+|++++-
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5888888888888888888773
No 206
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.83 E-value=11 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=18.1
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
=++|++++|+.|++||+|++++-
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 45788888888888888888774
No 207
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=56.70 E-value=13 Score=35.23 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=32.3
Q ss_pred ccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
..+|+.|++||.+.-++=. .++.+--|.+-+--...+.+|+.|..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 3568888888888877766 55554444321212345677788888887764
No 208
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=56.34 E-value=9.1 Score=39.92 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=29.2
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.+-||..|+|.++++++||.|..|+.|+.+..
T Consensus 603 v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 603 VIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred ceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 36899999999999999999999999998764
No 209
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.27 E-value=16 Score=34.91 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=29.9
Q ss_pred eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
...-+.||..|++ ...++.||.|+.|++|+.|-+.
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp 256 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDY 256 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 4566899999999 5678999999999999999754
No 210
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=56.18 E-value=12 Score=36.70 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=18.5
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
--++|++++||.|++||+|++++-
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 345688888888888888888773
No 211
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=55.94 E-value=16 Score=36.33 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.-+.||..|.+ .-.++.||.|+.|++|+.|.+..
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 35899999999 56789999999999999997643
No 212
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=55.85 E-value=18 Score=30.34 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=29.0
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce---eeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV---TIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa---~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
..|+|.++..++ +|.-...|+|+.- +-.||+- .++.+++||.|+.|++|-.
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G-----peLiV~eG~~V~~dqpLT~ 62 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG-----PELIVSEGQSVKADQPLTN 62 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS-----S-BS--TT-EETTT-BSB-
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC-----CeEEEcCCCEEecCCcccC
Confidence 468888887755 4555666666543 2334442 1678889999999988753
No 213
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.59 E-value=17 Score=34.77 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=29.4
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.-+.||.+|++. ..++.||.|..|++|+.|.+.
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~ 252 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDP 252 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECC
Confidence 578999999996 589999999999999999764
No 214
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.58 E-value=12 Score=36.08 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=19.7
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
+--++|++++|+.|++||+|++++-
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEEE
Confidence 3456888888888888888888873
No 215
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=55.18 E-value=13 Score=35.54 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.5
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++|+.|++||+|++++=
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4789999999999998888873
No 216
>PRK04350 thymidine phosphorylase; Provisional
Probab=54.86 E-value=11 Score=39.28 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCCCCCeEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 98 lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
+|--++-+-=+.++++.||.|++||+|+.|-.
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 44455556667899999999999999999984
No 217
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.78 E-value=13 Score=35.87 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcc-chHHHHHHHHHHHHhh
Q 019331 253 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKL-GLMSGFVKAAVSALQH 313 (342)
Q Consensus 253 IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKl-S~~~fiiKAva~AL~~ 313 (342)
+.+.+..-++..|+.. .+|.++.+.++.+-+... ...+-| .+.+=-+|.++..|++
T Consensus 169 i~~av~~~r~~~~~~k--IeVEv~~leea~~a~~ag---aDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 169 LEEAIRRAKEFSVYKV--VEVEVESLEDALKAAKAG---ADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHHHhCCCCc--EEEEeCCHHHHHHHHHcC---cCEEEECCCCHHHHHHHHHHHHh
Confidence 3333444444456543 666677888888776532 112333 4556677777777754
No 218
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=54.69 E-value=29 Score=34.83 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=39.7
Q ss_pred EccCCCeeeCCCeEEEEE-eCceeee--eeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 111 LKQPGDRVEMDEPIAQIE-TDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~eve-tdKa~~e--i~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|+||.|..||.|.+|. |.-...- ++.-..|.|..+ +.+|+ ..+-+.++.++.++
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeCC
Confidence 468999999999999886 3323333 466679999764 45666 44567888888644
No 219
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=54.61 E-value=21 Score=35.82 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=38.2
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEe-------eeCCCCEecCCCeEEE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL-------IAKEGETVEPGAKIAV 163 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i-------~~~~G~~v~vG~~la~ 163 (342)
+||-+.+.+.|-... +...+..--+|=|-.+|+|.++ .|++||.|+.||+|..
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 577777777664322 3333455577888999999988 4678889999999874
No 220
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=53.90 E-value=13 Score=35.71 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=17.4
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
-++|++++||.|++||.|++++-
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEe
Confidence 45778888888888888877763
No 221
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.89 E-value=26 Score=34.09 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.8
Q ss_pred ceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 131 KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 131 Ka~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
....-+.||..|.+ .-.++.|+.|+.|++|+.|.+.
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECC
Confidence 34467899999999 5679999999999999999864
No 222
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=53.72 E-value=28 Score=37.06 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=41.4
Q ss_pred EccCCCeeeCCCeEEEEE-eCceeee--eeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 111 LKQPGDRVEMDEPIAQIE-TDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~eve-tdKa~~e--i~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+++||.|..||++.+|. |.-...- ++.-..|+|..| +.+|+ ..+.++|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeCC
Confidence 578899999999999765 4333333 466678999876 45666 56789999998644
No 223
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=53.42 E-value=13 Score=37.75 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
++-+.=+.++++.||.|++||+|+.|-++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 44455568999999999999999999854
No 224
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.19 E-value=19 Score=34.26 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=27.6
Q ss_pred ccCCCeeeC-CCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 112 KQPGDRVEM-DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 112 v~~Gd~V~~-gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
++.|+.|.+ |++|++.. .-++.+|++|.+ ++-+...+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 345677777 77777732 267777777765 3345555556665543
No 225
>CHL00037 petA cytochrome f
Probab=52.94 E-value=24 Score=34.35 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=31.0
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEE-EeCc---eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQI-ETDK---VTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~ev-etdK---a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
..|+|.++..++ +|.-...| +|.. .+-.|++- .++++.+||.|++|++|-.
T Consensus 210 ~~G~I~~I~~~e-----kGg~~vti~~t~~G~~v~~~iP~G-----p~LiVs~G~~v~~~qpLTn 264 (320)
T CHL00037 210 AAGIVSKILRKE-----KGGYEITIVDTSDGRQVVDIIPPG-----PELLVSEGESIKLDQPLTN 264 (320)
T ss_pred cCcEEEEEEEcC-----CCcEEEEEEecCCCCEEEEeeCCC-----CeEEEecCceEecCCcccC
Confidence 456676666543 34444455 4432 22233332 1678999999999999874
No 226
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=52.86 E-value=12 Score=39.12 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 98 lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
+|--++-+-=+.++++.||.|++||+|+.|-.
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 44455666667899999999999999999984
No 227
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=52.52 E-value=22 Score=32.82 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.0
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEe
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
..|+-| .+|.|..+++++|+.|..|++|+.|-.
T Consensus 89 ~~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 89 VEVRSP------FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred EEEECC------CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 356788 789999999999999999999998753
No 228
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=52.52 E-value=20 Score=35.21 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=29.7
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
..-+.||..|++. ..++.|+.|+.|++|+.|-+-
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCCEeCCCCEEEEEECC
Confidence 3458999999994 689999999999999999873
No 229
>COG3608 Predicted deacylase [General function prediction only]
Probab=51.64 E-value=24 Score=34.91 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=33.1
Q ss_pred EEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 125 AQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 125 ~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
...+++ .--+.||.+|.| ..+++.||.|..|++|++|-+.+
T Consensus 250 ~~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~~ 290 (331)
T COG3608 250 LALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDPP 290 (331)
T ss_pred eecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEecCC
Confidence 334444 345899999998 78999999999999999998743
No 230
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=51.55 E-value=26 Score=26.94 Aligned_cols=30 Identities=37% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEecCCcc
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~~~~~ 170 (342)
+..|+. ++.+.||.|..|++|+.|-..++.
T Consensus 30 ~~vGi~--l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 30 PAVGIE--LHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp TT-EEE--ESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCeE--ecCcCcCEECCCCeEEEEEcCChH
Confidence 445654 788999999999999999865543
No 231
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=50.23 E-value=15 Score=37.71 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
...|.|.+...+|||.+..|++||+|+++..
T Consensus 50 MeeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred ccCCceeeEeeccCCccCCCceEEEEecccc
Confidence 4689999999999999999999999987543
No 232
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=49.52 E-value=15 Score=28.74 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=19.5
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+-+....|++||.|++||.|..+....
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred eccccccceecccccCCCEEEecCCCC
Confidence 345555699999999999999998543
No 233
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=47.63 E-value=14 Score=35.21 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.8
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
-+...+-|..-+++++|||.|+.|++|..=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 357788999999999999999999999874
No 234
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=46.25 E-value=37 Score=35.38 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=33.5
Q ss_pred EEeCceeeeeeCCCCeEEEE------------------------eeeCCCCEecCCCeEEEEecCC
Q 019331 127 IETDKVTIDVASPQAGVIQN------------------------LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 127 vetdKa~~ei~ap~~G~l~~------------------------i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+..-+-+.+|.|+.+|+|.. ++++.||.|..|++|+.|-.+.
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAES 472 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCC
Confidence 44456678888888888865 4688999999999999998544
No 235
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=45.64 E-value=35 Score=28.79 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 121 gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-+.|..|.-|-+.++ |.=-+.++++||.|+.|++|+.++.
T Consensus 64 ~evLiHiGidTV~L~------G~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 64 VEILIHIGIDTVKLN------GEGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred cEEEEEeeeceeecC------CCceEEEecCCCEEcCCCEEEEEcH
Confidence 356666666655443 3334678999999999999999974
No 236
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=45.60 E-value=36 Score=27.66 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
...|.-.+..|++||.|..||.|+..+.
T Consensus 36 qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 36 QHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred ccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 3356666889999999999999999753
No 237
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=45.01 E-value=52 Score=32.41 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=21.6
Q ss_pred EEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 144 IQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 144 l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+.+++|++||.|+.||.|+.+...+.
T Consensus 269 l~~i~Vk~Gq~V~~Gq~Ig~~G~tg~ 294 (319)
T PRK10871 269 NDTMLVREQQEVKAGQKIATMGSTGT 294 (319)
T ss_pred CCccccCCcCEECCCCeEEeEcCCCC
Confidence 44678999999999999999986543
No 238
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=44.96 E-value=35 Score=28.88 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 121 gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-++|..+..|-+.++ |.=-+.++++||.|..|++|+.++.
T Consensus 64 ~eiLiHiGidTv~l~------g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 64 VEILIHIGIDTVKLN------GEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred cEEEEEeeeeeeecC------CCceEEEecCCCEEcCCCEEEEEcH
Confidence 345555555544442 3334678999999999999999974
No 239
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=44.06 E-value=28 Score=34.89 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.5
Q ss_pred eEEEEEEE-------ccCCCeeeCCCeEEE
Q 019331 104 DGTLAKFL-------KQPGDRVEMDEPIAQ 126 (342)
Q Consensus 104 eg~I~~w~-------v~~Gd~V~~gd~l~e 126 (342)
+|.|.+.. |++||.|++||+|..
T Consensus 197 dGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 197 DGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 57888774 789999999999984
No 240
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=43.74 E-value=22 Score=35.18 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
.+++ |++++|+.|.+|++|++||-+
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 3554 899999999999999999854
No 241
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=43.08 E-value=24 Score=33.06 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=35.1
Q ss_pred CCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 115 Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
|+.|++||.+.-++=- .++.+--|.+-+--+..+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999988864 55555444321222567889999999999863
No 242
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=41.91 E-value=45 Score=35.87 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=16.5
Q ss_pred EeeeCCCCEecCCCeEEEEec
Q 019331 146 NLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 146 ~i~~~~G~~v~vG~~la~i~~ 166 (342)
+.++++||.|+.||+|+.++.
T Consensus 563 ~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 563 TAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred eEEecCCCEEcCCCEEEEEcH
Confidence 345668899999999988874
No 243
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=40.99 E-value=32 Score=34.32 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=16.2
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
+..|.+++|+.|.+||+|++||-
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEE
Confidence 45677777777777777777764
No 244
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=40.01 E-value=33 Score=34.48 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEee-------eCCCCEecCCCeEEE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-------AKEGETVEPGAKIAV 163 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~-------~~~G~~v~vG~~la~ 163 (342)
+|+-..+.+.|.... -+.+.+..--+|-|-.+|+|.++. |++||.|+.||+|..
T Consensus 163 ~GTrl~i~v~Ek~~~------p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 163 RGTTLVIKVVEKQEP------KPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EeEEEEEEEEecCCC------CCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 577677766665431 111123334578888999999884 677888889988874
No 245
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.41 E-value=30 Score=33.59 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=19.8
Q ss_pred EEEEEEEc--cCCCeeeCCCeEEEEEe
Q 019331 105 GTLAKFLK--QPGDRVEMDEPIAQIET 129 (342)
Q Consensus 105 g~I~~w~v--~~Gd~V~~gd~l~evet 129 (342)
.....|++ ++|+.|++||+|++++-
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEEE
Confidence 34557887 89999999998888874
No 246
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=38.57 E-value=71 Score=34.09 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=40.8
Q ss_pred EccCCCeeeCCCeEEEEEeC-ce--eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 111 LKQPGDRVEMDEPIAQIETD-KV--TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetd-Ka--~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|+||.|..||.|.+|.-. -. -+=++.-..|.+..| +.+|+ ..+.+.|+.+.+.+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~ 181 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDED 181 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccC
Confidence 47889999999999998754 12 233566679999766 45665 56688999998643
No 247
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=38.37 E-value=19 Score=33.78 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=25.9
Q ss_pred EEEccCCCeeeCCCeEEEEEeCceeeee
Q 019331 109 KFLKQPGDRVEMDEPIAQIETDKVTIDV 136 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei 136 (342)
.|++-+|..|++=|+.|.||.||++.+.
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D~ 208 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSIDD 208 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccch
Confidence 5999999999999999999999998763
No 248
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=37.17 E-value=48 Score=39.06 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCCC---C-eEEEEEEEccC---CCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCe
Q 019331 88 GDLVDAVVPFMGESI---T-DGTLAKFLKQP---GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAK 160 (342)
Q Consensus 88 ~~~~~i~mP~lGe~m---~-eg~I~~w~v~~---Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~ 160 (342)
|...++.+-.|+.+- . .|.--..+.++ |-.+.-|--.|-.|-|-=-..+.||..|.|.+.+++.|+-|.+|++
T Consensus 633 gs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~ 712 (2196)
T KOG0368|consen 633 GSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQP 712 (2196)
T ss_pred CcEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCe
Confidence 445677777777641 1 12222223332 3345556666666655555668999999999999999999999999
Q ss_pred EEEEec
Q 019331 161 IAVISK 166 (342)
Q Consensus 161 la~i~~ 166 (342)
-|.|+.
T Consensus 713 YAeiEv 718 (2196)
T KOG0368|consen 713 YAEIEV 718 (2196)
T ss_pred eeeheh
Confidence 998874
No 249
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=36.12 E-value=69 Score=34.13 Aligned_cols=55 Identities=31% Similarity=0.453 Sum_probs=40.9
Q ss_pred ccCCCeeeCCCeEEEE-EeCceeee--eeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 112 KQPGDRVEMDEPIAQI-ETDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 112 v~~Gd~V~~gd~l~ev-etdKa~~e--i~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+++||.|..||++.+| ||.-.... ++.-+.|+|..| +.+|+ ..+.++|+.++..+
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 7899999999999988 44444333 455579999776 45666 56688999988644
No 250
>PRK04350 thymidine phosphorylase; Provisional
Probab=36.10 E-value=66 Score=33.58 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=33.9
Q ss_pred EEeCceeeeeeCCCCeEEEE------------------------eeeCCCCEecCCCeEEEEecCC
Q 019331 127 IETDKVTIDVASPQAGVIQN------------------------LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 127 vetdKa~~ei~ap~~G~l~~------------------------i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+..-+-+.+|.|+.+|+|.. ++++.||.|..|++|+.|-.+.
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~ 464 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAES 464 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCC
Confidence 44556788888888888875 4678999999999999998544
No 251
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=35.95 E-value=1.5e+02 Score=26.53 Aligned_cols=70 Identities=26% Similarity=0.276 Sum_probs=42.4
Q ss_pred EEEccCCCCCCCeEEEEEEEccCCCeee--------CCCe-EEEEEeCcee---eeeeCCCCeEEEEeeeCCCCEecCCC
Q 019331 92 DAVVPFMGESITDGTLAKFLKQPGDRVE--------MDEP-IAQIETDKVT---IDVASPQAGVIQNLIAKEGETVEPGA 159 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v~~Gd~V~--------~gd~-l~evetdKa~---~ei~ap~~G~l~~i~~~~G~~v~vG~ 159 (342)
-+.+| -+|+|.+....+|+... +++- ++.+||+.-. +.+-+...+.+ ...+++|+.++.|+
T Consensus 74 r~haP------~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i-~~~~~~g~~v~kGe 146 (189)
T TIGR00164 74 VNRAP------AGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRI-VCYVKEGEKVSRGQ 146 (189)
T ss_pred eEEcc------cccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEE-EEecCCCCEEecCc
Confidence 44566 57888887777786332 2333 3577776422 22222222222 22567899999999
Q ss_pred eEEEEecCC
Q 019331 160 KIAVISKSG 168 (342)
Q Consensus 160 ~la~i~~~~ 168 (342)
.++.+.-.+
T Consensus 147 eiG~f~fGS 155 (189)
T TIGR00164 147 RIGMIRFGS 155 (189)
T ss_pred EEEEEecCC
Confidence 999987653
No 252
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.90 E-value=68 Score=27.84 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.5
Q ss_pred CCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 138 ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
-|.+|.+.-..+..|+.+..|+++|-+.+-.
T Consensus 96 iPvEGYvVtpIaDvG~RvrkGd~~AAvttRk 126 (161)
T COG4072 96 IPVEGYVVTPIADVGNRVRKGDPFAAVTTRK 126 (161)
T ss_pred EecCcEEEEEeecccchhcCCCceeEEEecc
Confidence 3788999999999999999999999987644
No 253
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=35.68 E-value=73 Score=36.29 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=48.2
Q ss_pred EEccCCCCCCCeEEEEEEE----ccCCCeeeCCCeEEEEE-eCceeee--eeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 93 AVVPFMGESITDGTLAKFL----KQPGDRVEMDEPIAQIE-TDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~----v~~Gd~V~~gd~l~eve-tdKa~~e--i~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
|..|.|... .+|. +++||+|..||++.+|. |.-.+.- +|....|+|+.| +.+|+ ..+-++|+.++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 346777653 2564 67899999999999886 3333333 566679999876 45676 45678999998
Q ss_pred cCC
Q 019331 166 KSG 168 (342)
Q Consensus 166 ~~~ 168 (342)
..+
T Consensus 179 ~~~ 181 (1017)
T PRK14698 179 TPS 181 (1017)
T ss_pred cCC
Confidence 643
No 254
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=35.44 E-value=38 Score=32.63 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=39.2
Q ss_pred EEEEEEccC----CCeeeCCCeEEEEEeCceeeeeeCCCCeEEE-EeeeCCCCEecCCCeEEEEe
Q 019331 106 TLAKFLKQP----GDRVEMDEPIAQIETDKVTIDVASPQAGVIQ-NLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 106 ~I~~w~v~~----Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~-~i~~~~G~~v~vG~~la~i~ 165 (342)
.|..|.... |..|++||.+...+=. .++.+--|.+ .+. ...+.+|+.|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 455666533 7899999999988864 4544433332 321 23467999999999998654
No 255
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=34.90 E-value=57 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEEeeeCCCCEecCCCeEEEEec
Q 019331 142 GVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 142 G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
|.-=+.++++||.|+.|++|..++.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECH
Confidence 5566789999999999999999974
No 256
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=34.84 E-value=95 Score=32.78 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.4
Q ss_pred ccCCCeeeCCCeEEEEEeCc-e-eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 112 KQPGDRVEMDEPIAQIETDK-V-TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK-a-~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+++||.|..||+|-.|.--. . .+-++.+..|.+..+.+.+|+ ..+.++|+.++.++.
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCCC
Confidence 37999999999999875332 2 233566666666677777776 346789999976554
No 257
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=34.65 E-value=40 Score=31.84 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=22.5
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
.+.+..|.+++|+.|..||++++||-.
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G~ 74 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEGP 74 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEEc
Confidence 356778999999999999999998843
No 258
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=34.46 E-value=23 Score=34.88 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.6
Q ss_pred EEEccCCCeeeCCCeEEEEEe
Q 019331 109 KFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evet 129 (342)
+.+|++||.|++||.|+++-.
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred ccccCCcCEECCCCeEEeEcC
Confidence 457999999999999999875
No 259
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=34.06 E-value=33 Score=26.22 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=31.6
Q ss_pred EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCC----------CCEecCCCeEE
Q 019331 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKE----------GETVEPGAKIA 162 (342)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~----------G~~v~vG~~la 162 (342)
|..++||.| .| .+.++..+.+.+++...++|.|..-.+.. .+.+.+|+.|-
T Consensus 2 y~p~~GdiV-~g-~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~ 62 (86)
T cd05789 2 YIPEVGDVV-IG-RVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIV 62 (86)
T ss_pred CcCCCCCEE-EE-EEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEE
Confidence 555677776 23 23345666788888888999886543332 12467777654
No 260
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=34.04 E-value=43 Score=39.14 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.3
Q ss_pred EEEccCCCeeeCCCeEEEEEe--------CceeeeeeCCCCeEE
Q 019331 109 KFLKQPGDRVEMDEPIAQIET--------DKVTIDVASPQAGVI 144 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evet--------dKa~~ei~ap~~G~l 144 (342)
..+|+.||.|++||+|+|+.. +|+...|-|..+|.+
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 468999999999999999984 566678888888875
No 261
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=33.49 E-value=75 Score=33.26 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=31.3
Q ss_pred eCceeeeeeCCCCeEEEE------------------------eeeCCCCEecCCCeEEEEecCCc
Q 019331 129 TDKVTIDVASPQAGVIQN------------------------LIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 129 tdKa~~ei~ap~~G~l~~------------------------i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
.-+-+.+|.|+.+|+|.. ++.+.||.|..|++|+.|-.+.+
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~ 474 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESE 474 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCH
Confidence 345567777777777764 46789999999999999985443
No 262
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=33.44 E-value=55 Score=32.88 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.4
Q ss_pred CeEEEEEEE-------ccCCCeeeCCCeEEEE
Q 019331 103 TDGTLAKFL-------KQPGDRVEMDEPIAQI 127 (342)
Q Consensus 103 ~eg~I~~w~-------v~~Gd~V~~gd~l~ev 127 (342)
.+|.|.+.. |++||.|++||+|..=
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG 224 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLISG 224 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEEe
Confidence 368888875 6889999999999853
No 263
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=31.74 E-value=1.5e+02 Score=27.00 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=41.2
Q ss_pred CeEEEEEEEccCCCeeeC--------CC-eEEEEEeCc---ee-eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 103 TDGTLAKFLKQPGDRVEM--------DE-PIAQIETDK---VT-IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~--------gd-~l~evetdK---a~-~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
-+|+|.++...+|+.... ++ .+..+||++ .. +.+-+...+.+. ..+++|+.+..|+.++.+.-.
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEeEEecC
Confidence 579999998888875543 22 344677753 21 223333333332 256889999999999998765
No 264
>PRK02259 aspartoacylase; Provisional
Probab=31.66 E-value=19 Score=34.55 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=37.0
Q ss_pred EccCC--CeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEE
Q 019331 111 LKQPG--DRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (342)
Q Consensus 111 ~v~~G--d~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~ 163 (342)
.++.| +.|++||+|+.. .|--++.++++.+|+. +.++|...+..|..++.
T Consensus 231 ~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~~ 282 (288)
T PRK02259 231 QLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMSL 282 (288)
T ss_pred hhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhhh
Confidence 34556 559999999988 6777888899988887 56667666666665543
No 265
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=31.47 E-value=50 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=25.2
Q ss_pred eeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 117 RVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 117 ~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+++|+-|+.++. +|...-+.+.+|+.|..|+.||.+.+..
T Consensus 75 ~l~~G~~L~l~~v-----------eG~~v~~i~~~G~rV~~gd~lA~v~T~K 115 (150)
T PF09891_consen 75 LLKKGTELCLVPV-----------EGYQVYPIVDEGDRVRKGDRLAYVTTRK 115 (150)
T ss_dssp EE-TT-B-EEEEE-----------ESSEEEESS-TSEEE-TT-EEEEEE-TT
T ss_pred EECCCCEEEEEEe-----------cceEEEEEcccCcEeccCcEEEEEEecC
Confidence 3455666776653 4555577889999999999999998643
No 266
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=31.28 E-value=36 Score=29.09 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEeeeCCCCEecCCCeEEEEec
Q 019331 145 QNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 145 ~~i~~~~G~~v~vG~~la~i~~ 166 (342)
-+.++++||.|+.|++|+.++.
T Consensus 86 F~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 86 FETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp EEESS-TTSEE-TTEEEEEE-H
T ss_pred eEEEEeCCCEEECCCEEEEEcH
Confidence 3678999999999999999974
No 267
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=31.08 E-value=77 Score=32.63 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.0
Q ss_pred EeeeCCCCEecCCCeEEEEecCC
Q 019331 146 NLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 146 ~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.++.+.||.|..|++|+.|-.++
T Consensus 384 ~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 384 TLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred EEccCCcCEECCCCeEEEEeCCC
Confidence 35678999999999999998443
No 268
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=31.03 E-value=49 Score=33.77 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=14.4
Q ss_pred eeeCCCCEecCCCeEEEEecCC
Q 019331 147 LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~~~~ 168 (342)
++.+.||.|++|++|+.|-.++
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya~~ 402 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYAES 402 (435)
T ss_pred EEecCCCeeccCCeEEEEecCC
Confidence 4556777777777777776533
No 269
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=30.24 E-value=94 Score=31.66 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=30.6
Q ss_pred EeCceeeeeeCCCCeEEEE-------------------------------eeeCCCCEecCCCeEEEEecCC
Q 019331 128 ETDKVTIDVASPQAGVIQN-------------------------------LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 128 etdKa~~ei~ap~~G~l~~-------------------------------i~~~~G~~v~vG~~la~i~~~~ 168 (342)
-..+-..+|.|+.+|+|.. ++.+.||.|..|++|+.|-.++
T Consensus 328 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 328 PKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred CCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCC
Confidence 3456667777777777763 4678899999999999997443
No 270
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=30.09 E-value=69 Score=29.90 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=54.9
Q ss_pred EEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeC-----ce----------eeeeeCCCCeEEEEeeeCCCCEec
Q 019331 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD-----KV----------TIDVASPQAGVIQNLIAKEGETVE 156 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetd-----Ka----------~~ei~ap~~G~l~~i~~~~G~~v~ 156 (342)
.+....+||.++---+.+-.+-.||..+-|+.++||--= |. ..-.+.-..|+..+++ ++-.|.
T Consensus 78 ~l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL--~~G~V~ 155 (223)
T PRK11536 78 LFVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI--APGKVS 155 (223)
T ss_pred ccCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE--CCcEEc
Confidence 345668898887666778889999999999999888641 21 1122445679887766 667899
Q ss_pred CCCeEEEEecC
Q 019331 157 PGAKIAVISKS 167 (342)
Q Consensus 157 vG~~la~i~~~ 167 (342)
+|+.|-+++-.
T Consensus 156 ~GD~v~l~~r~ 166 (223)
T PRK11536 156 ADAPLELVSRV 166 (223)
T ss_pred CCCEEEEEeCC
Confidence 99999999864
No 271
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=29.99 E-value=54 Score=31.84 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=18.0
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
.+| . .+++|+.|..|++|++||-.
T Consensus 53 ~~i-~-~~~dG~~v~~g~~i~~i~G~ 76 (302)
T cd01571 53 VKV-Y-ALPEGTIFNPKEPVLRIEGP 76 (302)
T ss_pred eEE-E-EeCCCCEECCCCcEEEEEeC
Confidence 455 3 48888888888888888843
No 272
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=29.76 E-value=85 Score=32.29 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.6
Q ss_pred eeeCCCCEecCCCeEEEEecCC
Q 019331 147 LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~~~~ 168 (342)
++.+.||.|..|++|+.|-..+
T Consensus 384 l~~k~Gd~V~~Gd~l~~i~~~~ 405 (437)
T TIGR02643 384 DLLPLGDRVEKGEPLAVVHAAD 405 (437)
T ss_pred eccCCcCEeCCCCeEEEEECCC
Confidence 5678999999999999998544
No 273
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=29.58 E-value=72 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCeEEEEeeeCC-CCEecCCCeEEEEecCCc
Q 019331 140 QAGVIQNLIAKE-GETVEPGAKIAVISKSGE 169 (342)
Q Consensus 140 ~~G~l~~i~~~~-G~~v~vG~~la~i~~~~~ 169 (342)
.-|.|..+.... |+.+..|++|+.|+....
T Consensus 27 ~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 27 LLGDIVFVELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred hCCCEEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 367788876655 999999999999996543
No 274
>CHL00037 petA cytochrome f
Probab=29.53 E-value=1.3e+02 Score=29.49 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=41.8
Q ss_pred eEEEEccCCCCCC---CeEEEEEEEccCCCeeeCCCeEEEEEeCceee-eeeCCCCeEEEEeeeCC
Q 019331 90 LVDAVVPFMGESI---TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLIAKE 151 (342)
Q Consensus 90 ~~~i~mP~lGe~m---~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~~~~ 151 (342)
..||.+|=|++.= .+..-.++-+-.|--=..||+--. -+|... -+.|+.+|+|.+|.-.+
T Consensus 158 y~EivFPiLSPdPa~~k~~~f~KY~iyvGgNRGRGQvyP~--G~KSNNnv~~as~~G~I~~I~~~e 221 (320)
T CHL00037 158 YSEIVFPILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPD--GSKSNNTVYNATAAGIVSKILRKE 221 (320)
T ss_pred ccEEEEeecCCCCccCCCcccccccEEeccccCccccCCC--CcccCCcccccccCcEEEEEEEcC
Confidence 3577888877743 345566667888877777776543 246654 46889999999998755
No 275
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.63 E-value=1e+02 Score=28.53 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=55.1
Q ss_pred EEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCc-------eeee--------eeCCCCeEEEEeeeCCCCEecC
Q 019331 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK-------VTID--------VASPQAGVIQNLIAKEGETVEP 157 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK-------a~~e--------i~ap~~G~l~~i~~~~G~~v~v 157 (342)
+.-+.+||.++--=|.+-.+..||.+.-||.|.||---. ..++ -++-..|+..+++ ++-.|.+
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL--~~G~v~~ 153 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL--EEGKVRA 153 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc--ccceecC
Confidence 445679998888888889999999999999999996411 0111 1344567887766 6778999
Q ss_pred CCeEEEEecCC
Q 019331 158 GAKIAVISKSG 168 (342)
Q Consensus 158 G~~la~i~~~~ 168 (342)
|+.|-.+....
T Consensus 154 gD~l~l~~r~~ 164 (210)
T COG2258 154 GDPLKLIPRPS 164 (210)
T ss_pred CCceEEecCCC
Confidence 99999887543
No 276
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=25.51 E-value=23 Score=29.75 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=10.4
Q ss_pred EEEccCCCeeeCCCeEE
Q 019331 109 KFLKQPGDRVEMDEPIA 125 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~ 125 (342)
+..|++||.|+.||+|-
T Consensus 45 eLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 45 ELIVSEGQSVKADQPLT 61 (118)
T ss_dssp -BS--TT-EETTT-BSB
T ss_pred eEEEcCCCEEecCCccc
Confidence 45799999999999984
No 277
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=25.44 E-value=89 Score=36.52 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=30.2
Q ss_pred EEccCCCeeeCCCeEEEEEe-------CceeeeeeCCCCeEE
Q 019331 110 FLKQPGDRVEMDEPIAQIET-------DKVTIDVASPQAGVI 144 (342)
Q Consensus 110 w~v~~Gd~V~~gd~l~evet-------dKa~~ei~ap~~G~l 144 (342)
.+|+.|+.|+.+|+|+|+-+ +|+.-.|.|+.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 58999999999999999986 367778999999864
No 278
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=25.07 E-value=41 Score=34.62 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.4
Q ss_pred eeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 136 i~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
..+++.|.-.+.+|++||.|..||+|+.-..
T Consensus 32 pl~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~ 62 (447)
T TIGR01936 32 DGRDFVGMRPKMKVRPGDKVKAGQPLFEDKK 62 (447)
T ss_pred echhcCCCCCceEeCcCCEEcCCCEeEecCC
Confidence 4567778888999999999999999998653
No 279
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=24.83 E-value=29 Score=31.47 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEEEEEccCCCeeeCCCeEEE
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQ 126 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~e 126 (342)
+++.+|.+++|++|+.||.|.+
T Consensus 181 ~~~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 181 DKIFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred CCccccccCCCCEEEeeeEEeC
Confidence 4445999999999999999863
No 280
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=24.65 E-value=1.2e+02 Score=31.23 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.6
Q ss_pred eeeCCCCEecCCCeEEEEec
Q 019331 147 LIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~~ 166 (342)
++.+.||.|..|++|+.|-.
T Consensus 380 l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 380 LRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred eccCCcCEeCCCCeEEEEeC
Confidence 56789999999999999983
No 281
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=24.09 E-value=1.1e+02 Score=23.08 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=34.0
Q ss_pred EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCC------CEecCCCeEE
Q 019331 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG------ETVEPGAKIA 162 (342)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G------~~v~vG~~la 162 (342)
|+-++||.|. | .+..+..+.+.+++-+..+|.|..-..... +.+.+|+.|-
T Consensus 2 y~p~~GdiV~-G-~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~ 58 (82)
T cd04454 2 YLPDVGDIVI-G-IVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLIL 58 (82)
T ss_pred CCCCCCCEEE-E-EEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEE
Confidence 3446677663 2 355667788889998889999977655332 3467777654
No 282
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=23.42 E-value=1.2e+02 Score=38.16 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=0.0
Q ss_pred EEccCCCeeeCCCeEEEEEeC------------------cee------eeeeCCCCeEEE--------------------
Q 019331 110 FLKQPGDRVEMDEPIAQIETD------------------KVT------IDVASPQAGVIQ-------------------- 145 (342)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetd------------------Ka~------~ei~ap~~G~l~-------------------- 145 (342)
..|++||.|..||+|+.+-.. .|. .-+-|+.+|+|.
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~~~t~DITgGLprv~eLfear~~~pk~~a~i~ei~G~v~~~~~~~~~~~i~i~~~~~~~ 2695 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRS 2695 (2890)
T ss_pred EEecCCCEecccceEeeccccccccccccCCcccchhheEeecCCCCCceEEeccceEEEeccccCCceEEEEECCCCce
Q ss_pred ---------EeeeCCCCEecCCCeE
Q 019331 146 ---------NLIAKEGETVEPGAKI 161 (342)
Q Consensus 146 ---------~i~~~~G~~v~vG~~l 161 (342)
+++|++||.|..|+.|
T Consensus 2696 ~~y~v~~~~~~~v~~gd~v~~G~~l 2720 (2890)
T PRK09603 2696 MDYFVDKGKQILVHADEFVHAGEAM 2720 (2890)
T ss_pred eEEEccCCceeeecCCCEEccCCCc
No 283
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=23.18 E-value=70 Score=31.97 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=42.3
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCcee-eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVT-IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~-~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
+|.+..|....+..|++||.+...+=--.. +-++++. .+ +..+++|+.|..|+.|+.+..
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 345566767677899999999988864333 2345553 23 456789999999999987754
No 284
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=23.04 E-value=2.5e+02 Score=25.79 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=35.9
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecC
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEP 157 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~v 157 (342)
..+.+-+.+++.+. .....+|+.+++||.| +||+++ ..|+.|.+..|+.|+.
T Consensus 52 v~viVS~~~~S~~~----~vel~~gE~l~vGDei-~vd~e~----------veITSIE~~~gkRV~~ 103 (201)
T COG1326 52 VRVIVSRHEESFTK----EVELDPGETLKVGDEI-EVDGEE----------VEITSIELGGGKRVKS 103 (201)
T ss_pred EEEEEecCCcccce----eEecCCCCeEecCCEE-EEcCCE----------EEEEEEeeCCCccccc
Confidence 44555666665444 4566788999999975 677777 5567788888887664
No 285
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=22.45 E-value=98 Score=24.10 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=17.7
Q ss_pred EEeeeCCCCEecCCCeEEEEec
Q 019331 145 QNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 145 ~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.+.++++|+.+..|++|+.+.-
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEe
Confidence 5688999999999999999974
No 286
>PRK11637 AmiB activator; Provisional
Probab=22.07 E-value=1.7e+02 Score=29.61 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=34.3
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|+|+.... ....-.++.|+...-.+.+-+ .+..+.+.+|+.|..|++|+.+...+
T Consensus 346 ~~G~V~~~~~-----~~~~G~~vii~hg~g~~t~Y~----~~~~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 346 ADGRVLLADW-----LQGYGLVVVVEHGKGDMSLYG----YNQSALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred CCeEEEEeec-----cCCcccEEEEEeCCCcEEEcc----CCCcCCCCCcCEECCCCeEEeecCCC
Confidence 4677765411 111122445555443333333 24567899999999999999997654
No 287
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=21.10 E-value=55 Score=33.70 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.3
Q ss_pred eeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 136 VASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 136 i~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
..+.+.|.-.+..|++||.|..||+|+.-.
T Consensus 33 pl~qh~G~~~~~~V~~GD~V~~Gq~I~~~~ 62 (448)
T PRK05352 33 LGEDYVGLRPKMKVKEGDKVKKGQPLFEDK 62 (448)
T ss_pred echhcCCCCCceEeCcCCEEcCCCEeEecC
Confidence 345667888899999999999999999754
No 288
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=20.99 E-value=88 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceee
Q 019331 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI 134 (342)
Q Consensus 98 lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ 134 (342)
||.|| |...-|.. .|+.|++|+||..++-..
T Consensus 86 mg~Gk--G~pegwaA----rVkpG~vlfei~g~~e~~ 116 (146)
T COG0197 86 MGKGK--GKPEGWAA----RVKPGRVLFEIAGVPEEL 116 (146)
T ss_pred ccCCC--CCccEEEE----EecCCcEEEEEecCcHHH
Confidence 77777 78888875 688899999999886544
No 289
>PF11160 DUF2945: Protein of unknown function (DUF2945); InterPro: IPR021331 This family of proteins has no known function.
Probab=20.86 E-value=1.9e+02 Score=21.57 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEEEEccCCC----ee--eCCCeEEEEEeCc
Q 019331 97 FMGESITDGTLAKFLKQPGD----RV--EMDEPIAQIETDK 131 (342)
Q Consensus 97 ~lGe~m~eg~I~~w~v~~Gd----~V--~~gd~l~evetdK 131 (342)
+.+.+...|+|.+.+-++.. .| .++||-++||+||
T Consensus 7 ~s~~g~~~G~V~~~~t~~~~~~G~~v~AS~ddP~Y~I~sd~ 47 (62)
T PF11160_consen 7 NSGQGTTTGTVVEVHTEPTEIKGRTVNASKDDPRYEIESDK 47 (62)
T ss_pred cCCCCeEEEEEEEEEecceeECCEEecCCCCCCEEEEEEcC
Confidence 34556678888888776553 22 2478888888776
No 290
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=20.68 E-value=3.5e+02 Score=21.30 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=25.3
Q ss_pred CCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccE
Q 019331 293 HGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDI 334 (342)
Q Consensus 293 ~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnI 334 (342)
.|..+|.. ..++-.+|.+. .-+.+|+|+.|+..+.|=|
T Consensus 28 ~~~~vs~e---gQ~lF~~l~Kt-~~dv~W~g~~IiV~d~V~I 65 (91)
T PF09793_consen 28 IGPGVSPE---GQKLFDALSKT-IPDVRWDGKNIIVLDEVKI 65 (91)
T ss_pred cCCCcCHH---HHHHHHHHHhh-CCCCEECCCeEEEeCceEE
Confidence 46666654 44556666655 2259999999988886544
Done!