Query 019331
Match_columns 342
No_of_seqs 257 out of 1688
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 3E-51 1E-55 409.3 1.5 253 89-342 1-300 (428)
2 3mae_A 2-oxoisovalerate dehydr 99.9 1.3E-27 4.5E-32 223.7 12.7 105 238-342 15-119 (256)
3 1scz_A E2, dihydrolipoamide su 99.9 1.1E-26 3.9E-31 214.7 12.1 102 241-342 4-105 (233)
4 3l60_A Branched-chain alpha-ke 99.9 1.5E-25 5.2E-30 209.1 11.8 96 241-342 15-114 (250)
5 1dpb_A Dihydrolipoyl-transacet 99.9 2.7E-25 9.3E-30 206.6 12.4 101 241-342 15-117 (243)
6 3rqc_A Probable lipoamide acyl 99.9 9.2E-26 3.1E-30 207.4 8.4 98 240-342 5-104 (224)
7 2ii3_A Lipoamide acyltransfera 99.9 1.1E-24 3.9E-29 204.5 13.0 102 239-342 29-132 (262)
8 3b8k_A PDCE2;, dihydrolipoylly 99.9 2.7E-25 9.2E-30 206.1 6.2 101 240-342 11-111 (239)
9 1y8o_B Dihydrolipoyllysine-res 99.8 1.7E-20 5.9E-25 158.2 12.7 86 85-170 22-108 (128)
10 2dnc_A Pyruvate dehydrogenase 99.8 2.2E-20 7.6E-25 150.5 10.6 84 87-170 4-88 (98)
11 2dne_A Dihydrolipoyllysine-res 99.8 1.8E-20 6.2E-25 153.6 10.2 83 87-169 4-87 (108)
12 3crk_C Dihydrolipoyllysine-res 99.8 4.5E-20 1.5E-24 145.1 11.9 81 89-169 4-85 (87)
13 1k8m_A E2 component of branche 99.8 8.7E-20 3E-24 145.5 11.2 81 89-169 3-83 (93)
14 1zy8_K Pyruvate dehydrogenase 99.8 9.3E-21 3.2E-25 174.5 0.0 81 88-168 1-82 (229)
15 1ghj_A E2, E2, the dihydrolipo 99.8 5.5E-19 1.9E-23 136.0 9.2 77 91-167 2-78 (79)
16 1pmr_A Dihydrolipoyl succinylt 99.8 8.5E-20 2.9E-24 141.1 0.5 76 91-166 3-78 (80)
17 2l5t_A Lipoamide acyltransfera 99.7 4.4E-18 1.5E-22 130.2 9.3 75 91-165 2-76 (77)
18 1qjo_A Dihydrolipoamide acetyl 99.7 6E-18 2.1E-22 130.2 9.3 77 90-168 2-78 (80)
19 1q23_A Chloramphenicol acetylt 99.7 1.4E-17 4.9E-22 152.3 10.0 72 261-342 27-99 (219)
20 3cla_A Type III chloramphenico 99.7 2.1E-17 7.2E-22 150.6 9.4 71 262-342 23-94 (213)
21 1iyu_A E2P, dihydrolipoamide a 99.7 6.5E-17 2.2E-21 124.3 9.9 75 91-168 2-76 (79)
22 2xt6_A 2-oxoglutarate decarbox 99.7 3.4E-17 1.2E-21 179.4 10.0 85 256-341 1-89 (1113)
23 2i9d_A Chloramphenicol acetylt 99.7 6.1E-17 2.1E-21 148.0 9.8 71 262-342 25-97 (217)
24 1gjx_A Pyruvate dehydrogenase; 99.7 2.8E-17 9.7E-22 126.9 5.2 77 90-167 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.6 3.2E-16 1.1E-20 122.3 -0.0 73 91-169 3-75 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.5 2.1E-13 7.1E-18 102.3 9.2 65 103-167 6-70 (72)
27 2kcc_A Acetyl-COA carboxylase 99.4 9.9E-14 3.4E-18 108.1 6.2 65 103-168 12-76 (84)
28 2jku_A Propionyl-COA carboxyla 99.4 5.5E-14 1.9E-18 111.9 3.1 76 90-165 15-94 (94)
29 2dn8_A Acetyl-COA carboxylase 99.4 7.5E-13 2.6E-17 106.3 8.6 65 103-168 24-88 (100)
30 2d5d_A Methylmalonyl-COA decar 99.4 2.5E-12 8.5E-17 96.6 9.4 63 103-165 12-74 (74)
31 1dcz_A Transcarboxylase 1.3S s 99.3 3.1E-12 1.1E-16 97.1 8.3 63 103-165 15-77 (77)
32 1bdo_A Acetyl-COA carboxylase; 99.3 4.5E-12 1.6E-16 97.2 8.7 63 103-165 11-80 (80)
33 2ejm_A Methylcrotonoyl-COA car 99.3 5.4E-12 1.9E-16 101.2 8.2 67 103-169 21-87 (99)
34 3n6r_A Propionyl-COA carboxyla 99.2 1.3E-11 4.4E-16 129.7 9.1 62 104-165 620-681 (681)
35 3va7_A KLLA0E08119P; carboxyla 99.2 2.8E-11 9.7E-16 134.1 9.2 61 104-164 1175-1235(1236)
36 3hbl_A Pyruvate carboxylase; T 99.2 4.2E-11 1.4E-15 132.1 9.0 64 104-167 1085-1148(1150)
37 3u9t_A MCC alpha, methylcroton 99.2 3.3E-12 1.1E-16 134.0 0.0 64 104-167 610-673 (675)
38 2k32_A A; NMR {Campylobacter j 99.0 7.7E-10 2.6E-14 90.4 6.7 67 103-169 8-104 (116)
39 3bg3_A Pyruvate carboxylase, m 98.9 4.5E-10 1.6E-14 118.2 3.5 61 104-164 657-717 (718)
40 2qf7_A Pyruvate carboxylase pr 98.8 1.4E-09 4.9E-14 120.1 5.5 62 104-165 1103-1164(1165)
41 1zko_A Glycine cleavage system 98.8 4.2E-09 1.4E-13 89.3 6.5 70 93-168 39-116 (136)
42 1hpc_A H protein of the glycin 98.4 1.2E-07 4.1E-12 79.9 3.8 71 92-168 29-107 (131)
43 1onl_A Glycine cleavage system 98.4 3.2E-07 1.1E-11 76.9 6.2 72 92-168 29-107 (128)
44 3a7l_A H-protein, glycine clea 98.4 2.7E-07 9.2E-12 77.4 5.6 73 91-168 29-108 (128)
45 2f1m_A Acriflavine resistance 98.1 1.3E-06 4.6E-11 80.8 3.9 67 103-169 29-168 (277)
46 3ne5_B Cation efflux system pr 98.1 5.7E-06 2E-10 81.6 8.1 66 103-168 128-242 (413)
47 3lnn_A Membrane fusion protein 98.1 5.3E-06 1.8E-10 79.5 7.2 67 103-169 64-207 (359)
48 3fpp_A Macrolide-specific effl 98.0 5.8E-06 2E-10 78.7 6.5 66 103-168 38-191 (341)
49 1vf7_A Multidrug resistance pr 97.8 8.6E-06 3E-10 78.9 3.5 66 103-168 50-174 (369)
50 3klr_A Glycine cleavage system 97.8 2.7E-05 9.4E-10 64.8 5.9 49 105-153 32-81 (125)
51 3mxu_A Glycine cleavage system 97.7 4.9E-05 1.7E-09 64.6 6.0 49 105-153 54-103 (143)
52 3tzu_A GCVH, glycine cleavage 97.6 5.6E-05 1.9E-09 63.9 5.3 45 105-149 49-94 (137)
53 4dk0_A Putative MACA; alpha-ha 97.4 9E-06 3.1E-10 78.1 -2.3 64 103-166 39-190 (369)
54 3hgb_A Glycine cleavage system 97.4 0.0002 6.8E-09 61.6 6.0 37 113-149 68-104 (155)
55 3na6_A Succinylglutamate desuc 96.8 0.0034 1.2E-07 60.1 8.5 60 106-167 266-329 (331)
56 2dn8_A Acetyl-COA carboxylase 96.7 0.00096 3.3E-08 52.8 3.4 47 121-167 5-51 (100)
57 3cdx_A Succinylglutamatedesucc 96.6 0.0056 1.9E-07 59.1 8.9 60 107-168 277-340 (354)
58 3fmc_A Putative succinylglutam 96.6 0.005 1.7E-07 59.9 8.4 60 105-166 298-363 (368)
59 1z6h_A Biotin/lipoyl attachmen 96.4 0.0045 1.6E-07 45.2 5.1 34 135-168 1-34 (72)
60 1dcz_A Transcarboxylase 1.3S s 96.3 0.0053 1.8E-07 45.5 4.9 36 133-168 8-43 (77)
61 2d5d_A Methylmalonyl-COA decar 96.2 0.0066 2.2E-07 44.4 5.1 35 134-168 6-40 (74)
62 2k32_A A; NMR {Campylobacter j 96.0 0.0074 2.5E-07 48.5 5.0 34 134-167 2-35 (116)
63 2kcc_A Acetyl-COA carboxylase 95.7 0.0078 2.7E-07 45.9 3.7 35 134-168 6-40 (84)
64 1f3z_A EIIA-GLC, glucose-speci 95.5 0.014 4.7E-07 50.5 4.9 65 92-166 14-117 (161)
65 2qj8_A MLR6093 protein; struct 95.3 0.046 1.6E-06 52.0 8.2 60 105-166 265-328 (332)
66 2gpr_A Glucose-permease IIA co 95.1 0.016 5.5E-07 49.7 4.0 66 91-166 8-112 (154)
67 2ejm_A Methylcrotonoyl-COA car 95.0 0.026 8.8E-07 44.3 4.8 37 132-168 13-49 (99)
68 2jku_A Propionyl-COA carboxyla 94.9 0.015 5.3E-07 45.2 3.0 35 133-167 25-59 (94)
69 2f1m_A Acriflavine resistance 94.8 0.03 1E-06 51.2 5.3 52 115-167 5-56 (277)
70 1ax3_A Iiaglc, glucose permeas 94.7 0.023 7.7E-07 49.2 3.8 60 103-166 19-117 (162)
71 1bdo_A Acetyl-COA carboxylase; 94.6 0.03 1E-06 41.8 4.0 35 134-168 5-46 (80)
72 3lnn_A Membrane fusion protein 94.3 0.034 1.2E-06 52.8 4.6 56 113-168 36-92 (359)
73 2l5t_A Lipoamide acyltransfera 94.2 0.03 1E-06 41.5 3.1 32 137-168 11-42 (77)
74 2xha_A NUSG, transcription ant 93.9 0.063 2.2E-06 47.6 5.0 31 109-145 22-52 (193)
75 3fpp_A Macrolide-specific effl 93.9 0.069 2.4E-06 50.2 5.7 55 112-167 11-65 (341)
76 3crk_C Dihydrolipoyllysine-res 93.4 0.12 4.2E-06 39.2 5.4 36 90-131 48-84 (87)
77 1ghj_A E2, E2, the dihydrolipo 93.4 0.12 4.2E-06 38.3 5.3 35 90-130 44-78 (79)
78 1qjo_A Dihydrolipoamide acetyl 92.9 0.1 3.4E-06 38.8 4.2 35 90-130 43-77 (80)
79 1gjx_A Pyruvate dehydrogenase; 92.8 0.078 2.7E-06 39.5 3.3 33 136-168 10-42 (81)
80 3ne5_B Cation efflux system pr 92.5 0.12 4E-06 50.5 5.2 57 112-168 99-157 (413)
81 1iyu_A E2P, dihydrolipoamide a 92.4 0.19 6.6E-06 37.2 5.1 35 90-130 41-75 (79)
82 1k8m_A E2 component of branche 92.3 0.12 4E-06 40.1 3.9 30 139-168 16-45 (93)
83 1vf7_A Multidrug resistance pr 92.0 0.11 3.9E-06 49.7 4.2 44 123-167 34-77 (369)
84 2dnc_A Pyruvate dehydrogenase 91.5 0.14 4.8E-06 40.1 3.6 30 139-168 19-48 (98)
85 1y8o_B Dihydrolipoyllysine-res 91.5 0.26 8.8E-06 40.8 5.3 29 103-131 77-106 (128)
86 2dne_A Dihydrolipoyllysine-res 91.5 0.15 5.3E-06 40.7 3.9 30 139-168 19-48 (108)
87 2xhc_A Transcription antitermi 91.5 0.2 6.9E-06 48.4 5.3 48 109-162 62-138 (352)
88 3d4r_A Domain of unknown funct 91.1 0.24 8.2E-06 42.7 4.9 46 103-148 107-153 (169)
89 2k7v_A Dihydrolipoyllysine-res 90.5 0.16 5.5E-06 38.3 3.0 36 89-130 38-73 (85)
90 2xha_A NUSG, transcription ant 90.5 0.18 6.1E-06 44.7 3.6 46 112-163 85-158 (193)
91 2auk_A DNA-directed RNA polyme 89.4 0.34 1.2E-05 42.7 4.5 45 109-155 63-107 (190)
92 4dk0_A Putative MACA; alpha-ha 89.3 0.11 3.7E-06 49.3 1.4 54 113-167 13-66 (369)
93 3n6r_A Propionyl-COA carboxyla 88.5 0.4 1.4E-05 50.1 5.0 36 133-168 612-647 (681)
94 1pmr_A Dihydrolipoyl succinylt 88.4 0.08 2.7E-06 39.6 -0.3 30 138-167 13-42 (80)
95 3hbl_A Pyruvate carboxylase; T 84.4 0.81 2.8E-05 50.6 5.0 35 134-168 1078-1112(1150)
96 3va7_A KLLA0E08119P; carboxyla 84.0 0.84 2.9E-05 50.9 4.9 36 133-168 1167-1202(1236)
97 3bg3_A Pyruvate carboxylase, m 83.4 0.63 2.1E-05 49.0 3.4 35 134-168 650-684 (718)
98 2xhc_A Transcription antitermi 82.5 0.54 1.9E-05 45.3 2.3 14 112-125 125-138 (352)
99 2gpr_A Glucose-permease IIA co 82.2 0.7 2.4E-05 39.4 2.6 58 104-164 87-153 (154)
100 3u9t_A MCC alpha, methylcroton 78.9 0.4 1.4E-05 50.0 0.0 35 133-167 602-636 (675)
101 2bco_A Succinylglutamate desuc 78.6 1.6 5.3E-05 41.8 4.1 50 111-167 280-329 (350)
102 3lu0_D DNA-directed RNA polyme 78.1 2.4 8E-05 47.4 5.7 35 109-145 1002-1036(1407)
103 2qf7_A Pyruvate carboxylase pr 78.1 1.4 4.8E-05 48.8 4.0 34 134-167 1096-1129(1165)
104 3dva_I Dihydrolipoyllysine-res 77.5 0.47 1.6E-05 46.9 0.0 30 103-132 52-81 (428)
105 3our_B EIIA, phosphotransferas 75.9 1.5 5E-05 38.5 2.7 27 105-131 115-141 (183)
106 1f3z_A EIIA-GLC, glucose-speci 73.2 3.8 0.00013 35.0 4.7 25 107-131 95-119 (161)
107 1zy8_K Pyruvate dehydrogenase 71.8 0.8 2.7E-05 41.5 0.0 29 139-167 15-43 (229)
108 1qpo_A Quinolinate acid phosph 68.3 3.5 0.00012 38.4 3.6 24 106-129 71-94 (284)
109 2b7n_A Probable nicotinate-nuc 66.6 4 0.00014 37.6 3.6 22 108-129 60-81 (273)
110 1x1o_A Nicotinate-nucleotide p 66.2 3.4 0.00012 38.6 3.0 22 108-129 74-95 (286)
111 1o4u_A Type II quinolic acid p 65.4 3.2 0.00011 38.7 2.7 22 108-129 73-94 (285)
112 3tqv_A Nicotinate-nucleotide p 65.3 3.6 0.00012 38.5 3.0 22 108-129 77-98 (287)
113 3l0g_A Nicotinate-nucleotide p 64.4 4.1 0.00014 38.4 3.2 52 264-320 205-257 (300)
114 3gnn_A Nicotinate-nucleotide p 63.4 4.1 0.00014 38.3 3.0 21 108-128 88-108 (298)
115 1qap_A Quinolinic acid phospho 62.8 4.3 0.00015 38.0 3.0 23 107-129 86-108 (296)
116 3paj_A Nicotinate-nucleotide p 62.7 4.3 0.00015 38.5 3.0 23 107-129 109-131 (320)
117 1hcz_A Cytochrome F; electron 62.7 11 0.00039 33.9 5.6 50 103-162 175-228 (252)
118 1zko_A Glycine cleavage system 62.5 2.5 8.6E-05 35.1 1.3 33 136-168 39-72 (136)
119 1brw_A PYNP, protein (pyrimidi 60.9 5.3 0.00018 39.5 3.4 30 102-131 372-401 (433)
120 3na6_A Succinylglutamate desuc 60.8 7.5 0.00026 36.7 4.4 35 132-167 256-290 (331)
121 2dsj_A Pyrimidine-nucleoside ( 60.8 5.2 0.00018 39.4 3.4 27 105-131 367-393 (423)
122 3fmc_A Putative succinylglutam 60.7 6.3 0.00022 37.8 3.9 33 133-166 290-322 (368)
123 1ax3_A Iiaglc, glucose permeas 60.3 3.3 0.00011 35.5 1.6 28 104-131 92-119 (162)
124 2jbm_A Nicotinate-nucleotide p 58.3 4.8 0.00016 37.7 2.5 22 108-129 73-94 (299)
125 1uou_A Thymidine phosphorylase 58.1 6.6 0.00022 39.2 3.6 27 105-131 410-436 (474)
126 3h5q_A PYNP, pyrimidine-nucleo 57.7 5.9 0.0002 39.1 3.2 31 102-132 375-405 (436)
127 1e2w_A Cytochrome F; electron 52.8 25 0.00085 31.7 6.0 52 103-162 175-229 (251)
128 1hpc_A H protein of the glycin 52.4 4.6 0.00016 33.2 1.2 33 136-168 30-63 (131)
129 2tpt_A Thymidine phosphorylase 52.3 5.5 0.00019 39.4 1.9 30 102-131 377-406 (440)
130 3cdx_A Succinylglutamatedesucc 50.7 20 0.0007 33.9 5.6 39 128-167 262-300 (354)
131 2jxm_B Cytochrome F; copper, e 48.9 16 0.00055 32.9 4.2 49 103-162 177-228 (249)
132 1uou_A Thymidine phosphorylase 47.9 24 0.00081 35.2 5.7 43 127-169 366-437 (474)
133 1onl_A Glycine cleavage system 47.6 6.3 0.00021 32.3 1.3 32 137-168 31-63 (128)
134 1q90_A Apocytochrome F; membra 47.2 29 0.001 31.9 5.7 52 103-162 175-229 (292)
135 1ci3_M Protein (cytochrome F); 46.6 24 0.00081 31.8 4.9 50 103-162 176-228 (249)
136 3it5_A Protease LASA; metallop 45.9 8.2 0.00028 33.4 1.8 19 148-166 86-104 (182)
137 3a7l_A H-protein, glycine clea 44.4 8.3 0.00028 31.5 1.5 32 137-168 32-64 (128)
138 3c2e_A Nicotinate-nucleotide p 44.4 9.5 0.00032 35.5 2.1 21 108-128 69-95 (294)
139 1brw_A PYNP, protein (pyrimidi 43.0 32 0.0011 33.8 5.8 42 128-169 330-402 (433)
140 3it5_A Protease LASA; metallop 43.0 46 0.0016 28.6 6.2 24 106-129 81-104 (182)
141 2dsj_A Pyrimidine-nucleoside ( 41.6 31 0.0011 33.9 5.4 41 128-169 323-394 (423)
142 2hsi_A Putative peptidase M23; 36.8 16 0.00053 33.9 2.3 22 147-168 232-253 (282)
143 3tuf_B Stage II sporulation pr 36.6 15 0.00052 33.3 2.1 23 107-129 132-154 (245)
144 1qwy_A Peptidoglycan hydrolase 35.3 17 0.00059 33.9 2.3 22 147-168 239-260 (291)
145 2tpt_A Thymidine phosphorylase 33.9 29 0.001 34.2 3.8 42 128-169 335-407 (440)
146 2lmc_B DNA-directed RNA polyme 32.7 5.7 0.00019 30.3 -1.2 15 111-125 68-82 (84)
147 3vr4_A V-type sodium ATPase ca 32.6 82 0.0028 32.3 6.9 53 112-167 131-186 (600)
148 3d4r_A Domain of unknown funct 30.9 63 0.0022 27.7 4.9 41 117-168 95-135 (169)
149 3nyy_A Putative glycyl-glycine 30.4 22 0.00076 32.3 2.1 21 148-168 183-203 (252)
150 3our_B EIIA, phosphotransferas 28.4 33 0.0011 29.8 2.8 21 146-166 119-139 (183)
151 2qj8_A MLR6093 protein; struct 28.4 63 0.0022 30.0 5.0 34 133-167 257-290 (332)
152 3tuf_B Stage II sporulation pr 28.4 78 0.0027 28.6 5.4 57 102-167 99-155 (245)
153 2gjh_A Designed protein; oblig 27.4 77 0.0026 21.7 3.9 28 299-328 19-46 (62)
154 2gu1_A Zinc peptidase; alpha/b 26.8 28 0.00097 33.0 2.3 22 147-168 284-305 (361)
155 3mfy_A V-type ATP synthase alp 26.7 1.3E+02 0.0044 30.7 7.2 54 111-166 123-179 (588)
156 3h5q_A PYNP, pyrimidine-nucleo 26.4 73 0.0025 31.3 5.2 19 147-165 383-401 (436)
157 3csq_A Morphogenesis protein 1 26.4 17 0.0006 34.2 0.7 21 109-129 250-270 (334)
158 1yw4_A Succinylglutamate desuc 26.0 14 0.00048 34.9 -0.1 35 111-145 278-317 (341)
159 2kuf_A PKNB, serine/threonine- 23.6 1.8E+02 0.006 23.0 6.3 25 101-125 41-65 (139)
160 2auk_A DNA-directed RNA polyme 22.4 42 0.0014 29.1 2.3 19 110-128 168-186 (190)
161 2kue_A PKNB, serine/threonine- 20.9 2E+02 0.0067 22.8 6.1 26 102-127 41-68 (138)
162 1baz_A ARC repressor; transcri 20.1 1.7E+02 0.0058 19.6 4.7 37 280-319 17-53 (53)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=3e-51 Score=409.27 Aligned_cols=253 Identities=25% Similarity=0.401 Sum_probs=15.5
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|.+|++|+.|+.++
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccccc--c--ccc-ccC---CCCCCC---CCCC--C----cCCCCCcccCcccccC-----------CCCCCCCCCCC
Q 019331 169 EGVAQAA--S--AEK-AAA---QPPPAE---EKPS--A----EKQTPESEAAPAVKDK-----------TPSEPPPTAKK 220 (342)
Q Consensus 169 ~~~~~~~--~--~~~-~~~---~~~~~~---~~~~--~----~~~~~~~~asP~vr~~-----------~~~~~~~~~~~ 220 (342)
+...... + ... .+. .+++.+ +.+. . ......+.+||++|++ .++|+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k 160 (428)
T 3dva_I 81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK 160 (428)
T ss_dssp -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence 4321110 0 000 000 000000 0000 0 0112245789999875 35676665443
Q ss_pred CCCCC---------CCCC----CCCCCC----CCCCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHH
Q 019331 221 PTSPP---------SKPM----ASEPQL----PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 283 (342)
Q Consensus 221 ~~~~~---------~~~~----~~~~~~----~~~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~ 283 (342)
.+... +... ...+.. ......+++||++|||+||++|++||+++||||+++|||||+|+++|+
T Consensus 161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk 240 (428)
T 3dva_I 161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK 240 (428)
T ss_dssp TTTTTTSCC-----------------------------------------------------------------------
T ss_pred HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence 22100 0000 000000 011235689999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEeecCC
Q 019331 284 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 284 ~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~--~~Iv~~~~vnIGIAV~Tp~ 342 (342)
++|+.+ ++.|+||||++||+||+++||++||.||++|++ ++|+++++|||||||+|++
T Consensus 241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~ 300 (428)
T 3dva_I 241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDR 300 (428)
T ss_dssp -------------------------------------------------------------
T ss_pred HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCC
Confidence 999764 356999999999999999999999999999998 7899999999999999974
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=99.95 E-value=1.3e-27 Score=223.67 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=99.6
Q ss_pred CCCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcc
Q 019331 238 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 317 (342)
Q Consensus 238 ~~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~l 317 (342)
...++++||++|||+||++|++||+++||||+++|||+|+|+++|+++|+.+.++.|.|+||++||+||+++||++||+|
T Consensus 15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~ 94 (256)
T 3mae_A 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL 94 (256)
T ss_dssp CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence 34568899999999999999999999999999999999999999999998877667899999999999999999999999
Q ss_pred eeEEeCCeEEEcCCccEEEEeecCC
Q 019331 318 NAVIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 318 Nas~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|++|++++|+++++|||||||+||+
T Consensus 95 Na~~~~~~i~~~~~vnigiAV~t~~ 119 (256)
T 3mae_A 95 NSTWAGDKIIEHANINISIAIAAGD 119 (256)
T ss_dssp SEEEETTEEEECSSCCEEECCCCTT
T ss_pred hhEEecCEEEEcCcEEEEeEEEcCC
Confidence 9999999999999999999999984
No 3
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=99.94 E-value=1.1e-26 Score=214.67 Aligned_cols=102 Identities=58% Similarity=0.946 Sum_probs=97.0
Q ss_pred cceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeE
Q 019331 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 241 ~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas 320 (342)
++++||++|||+||++|++||+++||||++.|||+|+|+++|+++|+.+.++.|.|+||++||+||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 45689999999999999999999999999999999999999999998776667899999999999999999999999999
Q ss_pred EeCCeEEEcCCccEEEEeecCC
Q 019331 321 IDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 321 ~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|++++|+++++|||||||+||+
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~ 105 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPR 105 (233)
T ss_dssp EETTEEECCSSCCEEECEEETT
T ss_pred EeCCEEEEeCceeEEEEEEcCC
Confidence 9999999999999999999984
No 4
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=99.92 E-value=1.5e-25 Score=209.06 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=89.9
Q ss_pred cceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeE
Q 019331 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 241 ~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas 320 (342)
.++ ||++|||+||++|++||+++||||+++|||+|+|+++|+++|+ .|.|+||++||+||+++||++||+||++
T Consensus 15 ~~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~ 88 (250)
T 3l60_A 15 DVR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNST 88 (250)
T ss_dssp CCC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEE
T ss_pred CCC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEE
Confidence 345 9999999999999999999999999999999999999999873 4789999999999999999999999999
Q ss_pred EeC----CeEEEcCCccEEEEeecCC
Q 019331 321 IDG----DDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 321 ~d~----~~Iv~~~~vnIGIAV~Tp~ 342 (342)
|++ ++|+++++|||||||+||+
T Consensus 89 ~~~~~~~~~i~~~~~vnigvAV~t~~ 114 (250)
T 3l60_A 89 WVDSGEGPQVHVHRGVHLGFGAATER 114 (250)
T ss_dssp EECTTTSCEEEECSSCCEEECEEETT
T ss_pred EeccCCCCeEEEcCceeEEEEEEcCC
Confidence 985 3899999999999999984
No 5
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=99.92 E-value=2.7e-25 Score=206.62 Aligned_cols=101 Identities=34% Similarity=0.428 Sum_probs=94.6
Q ss_pred cceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeE
Q 019331 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 241 ~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas 320 (342)
.+++||++|||.||++|++||+++||||++.|||+|+|+++|+++|+.+. +.|.|+||++||+||+++||++||+||++
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 46689999999999999999999999999999999999999999998654 56899999999999999999999999999
Q ss_pred EeCC--eEEEcCCccEEEEeecCC
Q 019331 321 IDGD--DIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 321 ~d~~--~Iv~~~~vnIGIAV~Tp~ 342 (342)
|+++ +|+++++|||||||+||+
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~ 117 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPD 117 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETT
T ss_pred EecCCCeEEEeCceeEEEEEECCC
Confidence 9864 899999999999999974
No 6
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=99.92 E-value=9.2e-26 Score=207.44 Aligned_cols=98 Identities=24% Similarity=0.389 Sum_probs=92.3
Q ss_pred CcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCccee
Q 019331 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (342)
Q Consensus 240 ~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNa 319 (342)
.++++||++|||+||++|++||+++||||++.|||+|+|+++|+++|+. |.|+||++||+||+++||++||+||+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-----g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-----NRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-----TCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 4567999999999999999999999999999999999999999999752 88999999999999999999999999
Q ss_pred EEeCC--eEEEcCCccEEEEeecCC
Q 019331 320 VIDGD--DIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 320 s~d~~--~Iv~~~~vnIGIAV~Tp~ 342 (342)
+|+++ +|+++++|||||||+||+
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~ 104 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPD 104 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSS
T ss_pred EEeCCCCEEEEeCccceEeEEEcCC
Confidence 99987 899999999999999984
No 7
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=99.91 E-value=1.1e-24 Score=204.49 Aligned_cols=102 Identities=29% Similarity=0.487 Sum_probs=93.9
Q ss_pred CCcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcce
Q 019331 239 DRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 318 (342)
Q Consensus 239 ~~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lN 318 (342)
..++++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.. ++.|.|+||++||+||+++||++||+||
T Consensus 29 ~~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~-~~~g~kls~~~~~ikAva~Al~~~P~~N 106 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIA-FARGIKLSFMPFFLKAASLGLLQFPILN 106 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred CCcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhh-hhccCCccHHHHHHHHHHHHHHhChHhh
Confidence 34577999999999999999997 699999999999999999999999753 4568999999999999999999999999
Q ss_pred eEEeCC--eEEEcCCccEEEEeecCC
Q 019331 319 AVIDGD--DIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 319 as~d~~--~Iv~~~~vnIGIAV~Tp~ 342 (342)
++|+++ +|+++++|||||||+||+
T Consensus 107 a~~~~~~~~i~~~~~v~igiAV~t~~ 132 (262)
T 2ii3_A 107 ASVDENCQNITYKASHNIGIAMDTEQ 132 (262)
T ss_dssp EEECTTSCEEEECSSCCEEECEEETT
T ss_pred EEEeCCCCEEEEecccceEEEEEcCC
Confidence 999864 899999999999999974
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-25 Score=206.12 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=94.2
Q ss_pred CcceeeCcHHHHHHHHHHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCccee
Q 019331 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (342)
Q Consensus 240 ~~~~vpls~~Rk~IA~~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNa 319 (342)
..+++||++|||+||++|++||+++||||++.|||+|+|+++|+++|+.+.+ +.|+||++||+||+++||++||+||+
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~Na 88 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEANS 88 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence 3567899999999999999999999999999999999999999999986432 36999999999999999999999999
Q ss_pred EEeCCeEEEcCCccEEEEeecCC
Q 019331 320 VIDGDDIIYRDYIDISFAVGTKK 342 (342)
Q Consensus 320 s~d~~~Iv~~~~vnIGIAV~Tp~ 342 (342)
+|++++|+++++|||||||+||+
T Consensus 89 ~~~~~~i~~~~~v~igvAV~~~~ 111 (239)
T 3b8k_A 89 SWMDTVIRQNHVVDVSVAVSTPA 111 (239)
T ss_dssp TSCCCSSSCSCCCCEEECEECSS
T ss_pred EEECCEEEEeCceeEEEEEEcCC
Confidence 99999999999999999999974
No 9
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.84 E-value=1.7e-20 Score=158.16 Aligned_cols=86 Identities=24% Similarity=0.456 Sum_probs=80.0
Q ss_pred CCCCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC-EecCCCeEEE
Q 019331 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAV 163 (342)
Q Consensus 85 ~~~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~-~v~vG~~la~ 163 (342)
++..+.++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+.
T Consensus 22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~ 101 (128)
T 1y8o_B 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 101 (128)
T ss_dssp -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence 445667899999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred EecCCcc
Q 019331 164 ISKSGEG 170 (342)
Q Consensus 164 i~~~~~~ 170 (342)
|...++.
T Consensus 102 i~~~~~~ 108 (128)
T 1y8o_B 102 IVEKEAD 108 (128)
T ss_dssp EESSGGG
T ss_pred EecCccc
Confidence 9876543
No 10
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=150.45 Aligned_cols=84 Identities=24% Similarity=0.556 Sum_probs=79.0
Q ss_pred CCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEe-cCCCeEEEEe
Q 019331 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV-EPGAKIAVIS 165 (342)
Q Consensus 87 ~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v-~vG~~la~i~ 165 (342)
..+.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.+ .+|++|+.|.
T Consensus 4 ~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 4 GSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp CCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred CcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 346689999999999999999999999999999999999999999999999999999999999999998 9999999998
Q ss_pred cCCcc
Q 019331 166 KSGEG 170 (342)
Q Consensus 166 ~~~~~ 170 (342)
..++.
T Consensus 84 ~~~~~ 88 (98)
T 2dnc_A 84 EEGED 88 (98)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 76543
No 11
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=153.60 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=78.7
Q ss_pred CCceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC-EecCCCeEEEEe
Q 019331 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVIS 165 (342)
Q Consensus 87 ~~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~-~v~vG~~la~i~ 165 (342)
..+.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|.
T Consensus 4 ~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 4 GSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred CccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999 899999999998
Q ss_pred cCCc
Q 019331 166 KSGE 169 (342)
Q Consensus 166 ~~~~ 169 (342)
..++
T Consensus 84 ~~~~ 87 (108)
T 2dne_A 84 GKPE 87 (108)
T ss_dssp SCHH
T ss_pred cCcc
Confidence 7654
No 12
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.83 E-value=4.5e-20 Score=145.07 Aligned_cols=81 Identities=23% Similarity=0.471 Sum_probs=77.1
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC-EecCCCeEEEEecC
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISKS 167 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~-~v~vG~~la~i~~~ 167 (342)
+..+|+||+||++|.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..+
T Consensus 4 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp CEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred cceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999 89999999999865
Q ss_pred Cc
Q 019331 168 GE 169 (342)
Q Consensus 168 ~~ 169 (342)
++
T Consensus 84 ~~ 85 (87)
T 3crk_C 84 EA 85 (87)
T ss_dssp ST
T ss_pred cC
Confidence 43
No 13
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.81 E-value=8.7e-20 Score=145.53 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=77.1
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.++|+||++|++|.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+.+|++|+.|..++
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred c
Q 019331 169 E 169 (342)
Q Consensus 169 ~ 169 (342)
.
T Consensus 83 ~ 83 (93)
T 1k8m_A 83 L 83 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.78 E-value=9.3e-21 Score=174.54 Aligned_cols=81 Identities=26% Similarity=0.633 Sum_probs=0.0
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCE-ecCCCeEEEEec
Q 019331 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISK 166 (342)
Q Consensus 88 ~~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~-v~vG~~la~i~~ 166 (342)
||.++|+||+|||+|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|..
T Consensus 1 ~~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 3567899999999999999999999999999999999999999999999999999999999999996 999999999975
Q ss_pred CC
Q 019331 167 SG 168 (342)
Q Consensus 167 ~~ 168 (342)
++
T Consensus 81 ~~ 82 (229)
T 1zy8_K 81 EG 82 (229)
T ss_dssp --
T ss_pred cC
Confidence 44
No 15
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.78 E-value=5.5e-19 Score=136.04 Aligned_cols=77 Identities=40% Similarity=0.668 Sum_probs=74.4
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
++|+||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..+
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998753
No 16
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.75 E-value=8.5e-20 Score=141.13 Aligned_cols=76 Identities=37% Similarity=0.622 Sum_probs=73.6
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.+|+||++|++|.+|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.+..|++|+.|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998864
No 17
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.74 E-value=4.4e-18 Score=130.22 Aligned_cols=75 Identities=32% Similarity=0.588 Sum_probs=73.3
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
++|+||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999986
No 18
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.74 E-value=6e-18 Score=130.24 Aligned_cols=77 Identities=26% Similarity=0.540 Sum_probs=73.8
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.++|+||++|++ +|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|..++
T Consensus 2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 468999999998 99999999999999999999999999999999999999999999999999999999999998654
No 19
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.72 E-value=1.4e-17 Score=152.30 Aligned_cols=72 Identities=11% Similarity=0.231 Sum_probs=67.4
Q ss_pred ccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEe-e
Q 019331 261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-G 339 (342)
Q Consensus 261 ~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV-~ 339 (342)
..++||||+++|||||+|+++|++ .|+||++|++||+++||++||+||++|++++|+++++||||||| +
T Consensus 27 ~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~ 96 (219)
T 1q23_A 27 SVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFH 96 (219)
T ss_dssp TTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEE
T ss_pred CCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEEEEEe
Confidence 368999999999999999999964 27999999999999999999999999999999999999999999 9
Q ss_pred cCC
Q 019331 340 TKK 342 (342)
Q Consensus 340 Tp~ 342 (342)
||+
T Consensus 97 t~~ 99 (219)
T 1q23_A 97 EQT 99 (219)
T ss_dssp TTT
T ss_pred cCC
Confidence 984
No 20
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.70 E-value=2.1e-17 Score=150.58 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=66.8
Q ss_pred cCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEe-ec
Q 019331 262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-GT 340 (342)
Q Consensus 262 ~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~~Iv~~~~vnIGIAV-~T 340 (342)
.++||||++.|||||+|+++|++ .|+||++|++||+++||++||+||++|++++|+++++||||||| +|
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 57999999999999999999953 27999999999999999999999999999999999999999999 99
Q ss_pred CC
Q 019331 341 KK 342 (342)
Q Consensus 341 p~ 342 (342)
|+
T Consensus 93 ~~ 94 (213)
T 3cla_A 93 ET 94 (213)
T ss_dssp TT
T ss_pred CC
Confidence 84
No 21
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.70 E-value=6.5e-17 Score=124.33 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=71.5
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
++|+||++|++ + +|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 57899999996 7 999999999999999999999999999999999999999999999999999999999998644
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.69 E-value=3.4e-17 Score=179.36 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=72.2
Q ss_pred HHHhcccCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEeCC----eEEEcCC
Q 019331 256 RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD----DIIYRDY 331 (342)
Q Consensus 256 ~M~~S~~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d~~----~Iv~~~~ 331 (342)
+|++|+ ++||||+++|||||+|+++|+++|+.+.++.|+|+||++||+||+++||++||.||++|+++ .|+++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 689996 89999999999999999999999987766779999999999999999999999999999854 6999999
Q ss_pred ccEEEEeecC
Q 019331 332 IDISFAVGTK 341 (342)
Q Consensus 332 vnIGIAV~Tp 341 (342)
|||||||+||
T Consensus 80 vnigiAV~t~ 89 (1113)
T 2xt6_A 80 TNLGLAIDLQ 89 (1113)
T ss_dssp CCEEEEC---
T ss_pred ccEEEEEecc
Confidence 9999999996
No 23
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=6.1e-17 Score=147.96 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=66.7
Q ss_pred cCccEEEEEeEEechHHHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCcceeEEe-CCeEEEcCCccEEEEe-e
Q 019331 262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID-GDDIIYRDYIDISFAV-G 339 (342)
Q Consensus 262 ~~iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNas~d-~~~Iv~~~~vnIGIAV-~ 339 (342)
.++||||++.|||+|+|+++|++ .|+||++|++||+++||++||+||++|+ +++|+++++||||||| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 67999999999999999999964 2799999999999999999999999999 8899999999999999 9
Q ss_pred cCC
Q 019331 340 TKK 342 (342)
Q Consensus 340 Tp~ 342 (342)
||+
T Consensus 95 t~~ 97 (217)
T 2i9d_A 95 KEN 97 (217)
T ss_dssp STT
T ss_pred cCC
Confidence 974
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.67 E-value=2.8e-17 Score=126.85 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=73.4
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.++|+||++| ++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..+
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 3678999999 7899999999999999999999999999999999999999999999999999999999999999754
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.55 E-value=3.2e-16 Score=122.33 Aligned_cols=73 Identities=26% Similarity=0.520 Sum_probs=68.9
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
++|++|++ |+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|...++
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~~ 75 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 75 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCSS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCCC
Confidence 46889988 89999999999999999999999999999999999999999999999999999999999987553
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.46 E-value=2.1e-13 Score=102.26 Aligned_cols=65 Identities=28% Similarity=0.487 Sum_probs=62.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999999999999999999998753
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.44 E-value=9.9e-14 Score=108.12 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=62.0
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|+|.+|++++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|...+
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 5699999999999999999999999999999999999999999999 9999999999999997643
No 28
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.41 E-value=5.5e-14 Score=111.90 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=29.3
Q ss_pred eEEEEccCCCCCC----CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 90 LVDAVVPFMGESI----TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 90 ~~~i~mP~lGe~m----~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
..+|.+|..++.. ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+.|..|++|+.|+
T Consensus 15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 3578899988865 589999999999999999999999999999999999999999999999999999999999874
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.5e-13 Score=106.32 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=61.9
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.+..|++|+.|...+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCC
Confidence 5699999999999999999999999999999999999999999 9999999999999999997543
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.37 E-value=2.5e-12 Score=96.59 Aligned_cols=63 Identities=29% Similarity=0.577 Sum_probs=60.7
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
..|+|.+|++++||.|++||+|++++++|...++.||.+|+|.++.+++|+.+..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 569999999999999999999999999999999999999999999999999999999999874
No 31
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.33 E-value=3.1e-12 Score=97.10 Aligned_cols=63 Identities=25% Similarity=0.504 Sum_probs=60.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.+|.|.+|++++||.|++||+|++++++|...+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 579999999999999999999999999999999999999999999999999999999999874
No 32
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.32 E-value=4.5e-12 Score=97.19 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=58.3
Q ss_pred CeEEEEE-------EEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 103 TDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 103 ~eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
..|+|.+ |++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 11 ~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 11 MVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3466665 69999999999999999999999999999999999999999999999999999874
No 33
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.30 E-value=5.4e-12 Score=101.15 Aligned_cols=67 Identities=18% Similarity=0.395 Sum_probs=63.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCCc
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..|+|.+|++++||.|++||+|++++++|+..+|.||++|+|.++++.+|+.|..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999986543
No 34
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.23 E-value=1.3e-11 Score=129.70 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=60.4
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999884
No 35
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.18 E-value=2.8e-11 Score=134.10 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=59.8
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
.|+|++|+|++||.|++||+|++|||||++++|+||++|+|.+|++++||.|.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999987
No 36
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.16 E-value=4.2e-11 Score=132.14 Aligned_cols=64 Identities=23% Similarity=0.471 Sum_probs=61.0
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999999999754
No 37
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.15 E-value=3.3e-12 Score=133.99 Aligned_cols=64 Identities=30% Similarity=0.598 Sum_probs=0.0
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999999999754
No 38
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.97 E-value=7.7e-10 Score=90.43 Aligned_cols=67 Identities=19% Similarity=0.406 Sum_probs=61.6
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceee-----------------------------eeeCCCCeEEEEeeeCCCC
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-----------------------------DVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-----------------------------ei~ap~~G~l~~i~~~~G~ 153 (342)
.+|.|.+|++++||.|++||+|+++++.++.. .|.||++|+|.++.+.+|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 46999999999999999999999999986654 8999999999999999999
Q ss_pred EecCC-CeEEEEecCCc
Q 019331 154 TVEPG-AKIAVISKSGE 169 (342)
Q Consensus 154 ~v~vG-~~la~i~~~~~ 169 (342)
.|..| ++|+.|.+.+.
T Consensus 88 ~v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 88 YVSASTTELVRVTNLNP 104 (116)
T ss_dssp EECTTTSCCEEEECSCT
T ss_pred EEcCCCcEEEEEECCCe
Confidence 99999 99999987654
No 39
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.90 E-value=4.5e-10 Score=118.24 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=59.6
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
+|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999876
No 40
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.85 E-value=1.4e-09 Score=120.12 Aligned_cols=62 Identities=19% Similarity=0.434 Sum_probs=53.8
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEe
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~ 165 (342)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999875
No 41
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.83 E-value=4.2e-09 Score=89.31 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=60.2
Q ss_pred EEccCCCCCCCeEEEEEEE-ccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEe---eeCCCCEec---CCC-eEEEE
Q 019331 93 AVVPFMGESITDGTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KIAVI 164 (342)
Q Consensus 93 i~mP~lGe~m~eg~I~~w~-v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i---~~~~G~~v~---vG~-~la~i 164 (342)
+.+|.+|+ |+.+. +++||.|++||+||+||++|+..+|.||.+|+|.++ +++.|+.|. -|+ .|+.|
T Consensus 39 ~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i 112 (136)
T 1zko_A 39 HAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKM 112 (136)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEE
Confidence 45677776 33333 499999999999999999999999999999999999 888999998 888 99999
Q ss_pred ecCC
Q 019331 165 SKSG 168 (342)
Q Consensus 165 ~~~~ 168 (342)
...+
T Consensus 113 ~~~~ 116 (136)
T 1zko_A 113 EISD 116 (136)
T ss_dssp EESC
T ss_pred EECC
Confidence 8654
No 42
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.42 E-value=1.2e-07 Score=79.86 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=55.8
Q ss_pred EEEccCCCCCCCeEEEEEEEc-cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC---Eec---CCC-eEEE
Q 019331 92 DAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TVE---PGA-KIAV 163 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~---~v~---vG~-~la~ 163 (342)
++.+|.+|+ |+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++.+.++ .+. -|+ -|+.
T Consensus 29 d~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~ 102 (131)
T 1hpc_A 29 DHAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIK 102 (131)
T ss_dssp HHHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEE
T ss_pred hhhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEE
Confidence 345676765 444444 99999999999999999999999999999999999866554 442 455 7888
Q ss_pred EecCC
Q 019331 164 ISKSG 168 (342)
Q Consensus 164 i~~~~ 168 (342)
|...+
T Consensus 103 i~~~~ 107 (131)
T 1hpc_A 103 IKPTS 107 (131)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 87544
No 43
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.41 E-value=3.2e-07 Score=76.92 Aligned_cols=72 Identities=26% Similarity=0.287 Sum_probs=56.4
Q ss_pred EEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeC---CCCEe---cCCC-eEEEE
Q 019331 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK---EGETV---EPGA-KIAVI 164 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~---~G~~v---~vG~-~la~i 164 (342)
++.+|.+|+ +...++ +++||.|++||+||+||++|+..+|.||.+|+|.+++.. ..+.+ +-|+ -|+.|
T Consensus 29 ~~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (128)
T 1onl_A 29 DYAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRL 103 (128)
T ss_dssp HHHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred hHHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEE
Confidence 345677776 444333 599999999999999999999999999999999999754 44445 5666 88888
Q ss_pred ecCC
Q 019331 165 SKSG 168 (342)
Q Consensus 165 ~~~~ 168 (342)
...+
T Consensus 104 ~~~~ 107 (128)
T 1onl_A 104 KPRD 107 (128)
T ss_dssp EESC
T ss_pred EECC
Confidence 7544
No 44
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.40 E-value=2.7e-07 Score=77.38 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=56.6
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC---Eec---CCC-eEEE
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TVE---PGA-KIAV 163 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~---~v~---vG~-~la~ 163 (342)
+++.+|.||+ +...++ +++||.|++||+||+||++|+..+|.||.+|+|.+++.+.++ .+. -|+ -|+.
T Consensus 29 td~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~ 103 (128)
T 3a7l_A 29 TEHAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFK 103 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred ehHHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEE
Confidence 3445777776 444333 599999999999999999999999999999999999765544 344 555 7888
Q ss_pred EecCC
Q 019331 164 ISKSG 168 (342)
Q Consensus 164 i~~~~ 168 (342)
|...+
T Consensus 104 i~~~~ 108 (128)
T 3a7l_A 104 IKASD 108 (128)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 87544
No 45
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.11 E-value=1.3e-06 Score=80.79 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=58.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.+|+|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998741
Q ss_pred --------------------eeeeeeCCCCeEEEEeeeCCCCEecCC--CeEEEEecCCc
Q 019331 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE 169 (342)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG--~~la~i~~~~~ 169 (342)
....|.||++|+|..+.+.+|+.|..| ++|+.|.+.+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence 124799999999999999999999999 68999976543
No 46
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.09 E-value=5.7e-06 Score=81.57 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=58.6
Q ss_pred CeEEEEEEEc-cCCCeeeCCCeEEEEEeC------------------------------------------------cee
Q 019331 103 TDGTLAKFLK-QPGDRVEMDEPIAQIETD------------------------------------------------KVT 133 (342)
Q Consensus 103 ~eg~I~~w~v-~~Gd~V~~gd~l~evetd------------------------------------------------Ka~ 133 (342)
.+|.|.+++| ++||.|++||+|+++++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999952 124
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||++|+|.++.+.+|+.|..|++|+.|.+.+
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~ 242 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 242 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence 68999999999999999999999999999997543
No 47
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.07 E-value=5.3e-06 Score=79.51 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=59.4
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce--------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (342)
..|.|.++++++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999998531
Q ss_pred --------------------------eeeeeCCCCeEEEEeeeCCCCEecC-CCeEEEEecCCc
Q 019331 133 --------------------------TIDVASPQAGVIQNLIAKEGETVEP-GAKIAVISKSGE 169 (342)
Q Consensus 133 --------------------------~~ei~ap~~G~l~~i~~~~G~~v~v-G~~la~i~~~~~ 169 (342)
...|.||++|+|..+.+.+|+.+.. |++|+.|.+.+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCCe
Confidence 2469999999999999999999999 999999986543
No 48
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.02 E-value=5.8e-06 Score=78.66 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=57.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.+|+|++||.|++||+|+++++.-
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 46999999999999999999999999741
Q ss_pred ----------------------------------eeeeeeCCCCeEEEEeeeCCCCEecCCCe---EEEEecCC
Q 019331 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISKSG 168 (342)
Q Consensus 132 ----------------------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG~~---la~i~~~~ 168 (342)
....|.||++|+|.++.+.+|+.|..|++ |+.|.+.+
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence 11459999999999999999999999987 88887644
No 49
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.80 E-value=8.6e-06 Score=78.87 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=57.8
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.++++++||.|++||+|+++++..
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999998742
Q ss_pred ------eeeeeeCCCCeEEEEeeeCCCCEecCC--CeEEEEecCC
Q 019331 132 ------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSG 168 (342)
Q Consensus 132 ------a~~ei~ap~~G~l~~i~~~~G~~v~vG--~~la~i~~~~ 168 (342)
....|.||++|+|..+.+.+|+.|..| ++|+.|...+
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 125799999999999999999999995 8999987544
No 50
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.80 E-value=2.7e-05 Score=64.83 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=41.8
Q ss_pred EEEEEEEc-cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC
Q 019331 105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 105 g~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~ 153 (342)
|.|+.+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-...+
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 45555544 78999999999999999999999999999999999665444
No 51
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.70 E-value=4.9e-05 Score=64.62 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=40.9
Q ss_pred EEEEEEEc-cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCC
Q 019331 105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (342)
Q Consensus 105 g~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~ 153 (342)
|.|+-+.. ++|+.|++||+++.||+.|+..+|.||.+|+|.++.-...+
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 44544433 88999999999999999999999999999999998655444
No 52
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.62 E-value=5.6e-05 Score=63.89 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=38.8
Q ss_pred EEEEEEEc-cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeee
Q 019331 105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (342)
Q Consensus 105 g~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (342)
|.|+-+.. ++|++|++||.++.||+.|+..+|.||.+|+|.++.-
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 44554433 8999999999999999999999999999999998853
No 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.44 E-value=9e-06 Score=78.09 Aligned_cols=64 Identities=22% Similarity=0.406 Sum_probs=55.1
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---------------------------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (342)
..|.|.+++|++||.|++||+|+++++..
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 45999999999999999999999998752
Q ss_pred ----------------------------------eeeeeeCCCCeEEEEeeeCCCCEecCCCe---EEEEec
Q 019331 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISK 166 (342)
Q Consensus 132 ----------------------------------a~~ei~ap~~G~l~~i~~~~G~~v~vG~~---la~i~~ 166 (342)
....|.||++|+|.++.+.+|+.|..|++ |+.|.+
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence 01359999999999999999999999998 666544
No 54
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.41 E-value=0.0002 Score=61.59 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=35.0
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeee
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (342)
++|+.|++||+++.||+.|+..+|.||.+|.|.++.-
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 7899999999999999999999999999999988753
No 55
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.78 E-value=0.0034 Score=60.15 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=51.0
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe----CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
=+.+.+++.||.|++||+|++|.. .....+|.||++|+|.... ..-.|..|+.|+.|...
T Consensus 266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEEECB
T ss_pred eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEecc
Confidence 377889999999999999999997 3567899999999996654 55788899999999753
No 56
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.00096 Score=52.76 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=41.8
Q ss_pred CCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 121 gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
|+.+|.++..+-...|.||.+|+|.++++++||.|+.|++|+.|+..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~ 51 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 51 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence 45567778888888999999999999999999999999999999854
No 57
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.64 E-value=0.0056 Score=59.07 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=52.8
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe----CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+++..++.||.|++||+|++|+. .+...+|.||.+|+|..+ .....|..|+.|+.|....
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDY 340 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEEC
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeec
Confidence 78888999999999999999997 578899999999999765 4788999999999997543
No 58
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.61 E-value=0.005 Score=59.89 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=51.2
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe------CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET------DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet------dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
+=|.+.+++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEEee
Confidence 3466789999999999999999998 55778999999999954 446679999999999874
No 59
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.38 E-value=0.0045 Score=45.19 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.1
Q ss_pred eeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 135 ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+|.||.+|+|.++++++|+.|..|++|+.|+...
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 34 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMK 34 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCc
Confidence 4789999999999999999999999999998653
No 60
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.27 E-value=0.0053 Score=45.51 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=32.6
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..+|.||.+|+|.++++++|+.|+.|++|+.|+...
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~ 43 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccc
Confidence 357899999999999999999999999999998643
No 61
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.21 E-value=0.0066 Score=44.41 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=32.0
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||.+|+|.++++++||.|+.|++|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence 46889999999999999999999999999998643
No 62
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=96.03 E-value=0.0074 Score=48.46 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=32.1
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+.|.|+.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999999999999999865
No 63
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.70 E-value=0.0078 Score=45.91 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=32.1
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+|.||.+|+|.++++++|+.|..|++|+.|+...
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 40 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence 47899999999999999999999999999998543
No 64
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.50 E-value=0.014 Score=50.48 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=55.4
Q ss_pred EEEccCCCCCCCeEEEEEEEccCCCeeeC----CCeEEEEEeCceeeeeeCCCCeEEEEe--------------------
Q 019331 92 DAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL-------------------- 147 (342)
Q Consensus 92 ~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i-------------------- 147 (342)
.|.-| -+|+|+... +..|.+-. |+.++...+| ..+.||++|+|..+
T Consensus 14 ~i~aP------~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH 83 (161)
T 1f3z_A 14 EIIAP------LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH 83 (161)
T ss_dssp EEECS------SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEec------CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEE
Confidence 45566 679999976 78888766 8999988887 47899999999998
Q ss_pred ---------------eeCCCCEecCCCeEEEEec
Q 019331 148 ---------------IAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 148 ---------------~~~~G~~v~vG~~la~i~~ 166 (342)
++++||.|+.|++|+.++.
T Consensus 84 iGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 84 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp CSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred ECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999974
No 65
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=95.25 E-value=0.046 Score=52.01 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=49.1
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEe----CceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
+-+....++.||.|++||+|+++-. .....+|.||++|+|.-.. ..-.|..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEee
Confidence 4455688899999999999999965 5677899999999995553 6668888999988864
No 66
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.11 E-value=0.016 Score=49.70 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=55.3
Q ss_pred EEEEccCCCCCCCeEEEEEEEccCCCeeeC----CCeEEEEEeCceeeeeeCCCCeEEEEe-------------------
Q 019331 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL------------------- 147 (342)
Q Consensus 91 ~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i------------------- 147 (342)
..+.-| -+|+|+... ++.|.+-. |+.++...+| ..+.||++|+|..+
T Consensus 8 ~~i~aP------~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 8 LKVLAP------CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEEECS------SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred CEEEec------CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 345666 679998874 88888766 8999988887 48999999999984
Q ss_pred ----------------eeCCCCEecCCCeEEEEec
Q 019331 148 ----------------IAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 148 ----------------~~~~G~~v~vG~~la~i~~ 166 (342)
++++||.|+.|++|+.++.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 8999999999999999974
No 67
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.03 E-value=0.026 Score=44.31 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.2
Q ss_pred eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
-...|.++.+|+|.++++++|+.|+.|++|+.|+...
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 3467899999999999999999999999999998644
No 68
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=94.87 E-value=0.015 Score=45.22 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=31.8
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 45689999999999999999999999999999864
No 69
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=94.80 E-value=0.03 Score=51.23 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 115 Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
|+--..=..-..|+.+ -...|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 5 ~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 5 EPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -----CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 3333333445567765 467899999999999999999999999999999864
No 70
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.66 E-value=0.023 Score=49.18 Aligned_cols=60 Identities=28% Similarity=0.415 Sum_probs=51.5
Q ss_pred CeEEEEEEEccCCCeeeC----CCeEEEEEeCceeeeeeCCCCeEEEEe-------------------------------
Q 019331 103 TDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL------------------------------- 147 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i------------------------------- 147 (342)
-+|+|+.. .+..|.+-. |+.++..-++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 57999997 778888766 8999987774 47899999999988
Q ss_pred ----eeCCCCEecCCCeEEEEec
Q 019331 148 ----IAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 148 ----~~~~G~~v~vG~~la~i~~ 166 (342)
++++||.|+.|++|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8999999999999999974
No 71
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=94.63 E-value=0.03 Score=41.80 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.8
Q ss_pred eeeeCCCCeEEEEe-------eeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNL-------IAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i-------~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||..|+|.++ ++++|+.|..|++|+.|+...
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence 46899999999998 999999999999999998644
No 72
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=94.32 E-value=0.034 Score=52.76 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=44.7
Q ss_pred cCCCeeeCCCeEEEEEeC-ceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 113 QPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.|+.-..-..-..|+.+ .-...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus 36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 344333334455677775 66789999999999999999999999999999998754
No 73
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=94.18 E-value=0.03 Score=41.46 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.9
Q ss_pred eCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 137 ASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 137 ~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+++.+|.|.++++++||.|..|++|+.++...
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k 42 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDK 42 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSS
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence 45789999999999999999999999998653
No 74
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.86 E-value=0.063 Score=47.58 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=24.8
Q ss_pred EEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEE
Q 019331 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~ 145 (342)
..+|++||.|++||.||+-. .|-+.++|+|.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 56899999999999999855 56666667664
No 75
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=93.86 E-value=0.069 Score=50.22 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=41.7
Q ss_pred ccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
++.|+.-..-..-..|+.. -...|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4444443333444566655 467899999999999999999999999999999864
No 76
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=93.42 E-value=0.12 Score=39.23 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=30.3
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCC-eeeCCCeEEEEEeCc
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd-~V~~gd~l~evetdK 131 (342)
..+|.-| .+|+|.++++++|| .|..|++|+.++...
T Consensus 48 ~~~i~Ap------~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 48 TIGFEVQ------EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECC------SCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred cceeecC------cCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 4555555 68999999999999 899999999998654
No 77
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=93.39 E-value=0.12 Score=38.28 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=29.9
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..+|.-| .+|+|.++++++||.|..|++|+.|+.+
T Consensus 44 ~~~i~Ap------~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 44 VMEVLAE------ADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp EEEEECS------SCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred eEEEEcC------CCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 4566666 6899999999999999999999999753
No 78
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.93 E-value=0.1 Score=38.77 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.7
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..+|.-| .+|+|.++++++||.|..|++|+.|+..
T Consensus 43 ~~~i~Ap------~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 43 SMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eEEEeCC------CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 4567777 6799999999999999999999999864
No 79
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=92.76 E-value=0.078 Score=39.54 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=29.1
Q ss_pred eeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 136 i~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+-++..|.|.++++++||.|..|++|+.++...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence 335789999999999999999999999998653
No 80
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=92.54 E-value=0.12 Score=50.54 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=43.2
Q ss_pred ccCCCeeeCCCeEEEEEeC-ceeeeeeCCCCeEEEEeee-CCCCEecCCCeEEEEecCC
Q 019331 112 KQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~-~~G~~v~vG~~la~i~~~~ 168 (342)
++.|+.-..-.....|+.| .-...|.++.+|+|.++++ ++||.|+.|++|+.|+..+
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~ 157 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 157 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence 3344444444455566653 4568899999999999998 9999999999999998543
No 81
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=92.42 E-value=0.19 Score=37.18 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=29.8
Q ss_pred eEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 90 ~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
..+|.-| .+|+|.++++++||.|..|++|+.|+.+
T Consensus 41 ~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 41 SMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 3556666 5799999999999999999999999853
No 82
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=92.29 E-value=0.12 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..+|+|.++++++||.|..|++|+.|+...
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence 468999999999999999999999998644
No 83
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=91.97 E-value=0.11 Score=49.66 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=36.8
Q ss_pred eEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 123 PIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 123 ~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 34455554 356899999999999999999999999999999853
No 84
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.54 E-value=0.14 Score=40.10 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.1
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
...|+|.++++++||.|..|++|+.|+...
T Consensus 19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K 48 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp CSEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred CccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence 358999999999999999999999998654
No 85
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=91.53 E-value=0.26 Score=40.79 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=26.4
Q ss_pred CeEEEEEEEccCCC-eeeCCCeEEEEEeCc
Q 019331 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd-~V~~gd~l~evetdK 131 (342)
.+|+|.++++++|| .|..|++|++|+...
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 58999999999998 899999999999654
No 86
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=91.49 E-value=0.15 Score=40.67 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=27.2
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..+|+|.++++++||.|..|++|+.|+...
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K 48 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence 468999999999999999999999998653
No 87
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=91.47 E-value=0.2 Score=48.36 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=35.1
Q ss_pred EEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEe---------------------------e--eCCCCEecCCC
Q 019331 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---------------------------I--AKEGETVEPGA 159 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i---------------------------~--~~~G~~v~vG~ 159 (342)
..+|++||.|++||.||+-. .|-+.++|+|... . +++|+.|.+|+
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~ 135 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL 135 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence 67899999999999999954 4555555554321 2 67788888888
Q ss_pred eEE
Q 019331 160 KIA 162 (342)
Q Consensus 160 ~la 162 (342)
+||
T Consensus 136 vla 138 (352)
T 2xhc_A 136 PLS 138 (352)
T ss_dssp BSB
T ss_pred EEe
Confidence 777
No 88
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.13 E-value=0.24 Score=42.72 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=40.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCceee-eeeCCCCeEEEEee
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLI 148 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~ 148 (342)
.||.-+-..+.+||.|.+||.|+-|.|-|-.+ -+.||++|+|.-+.
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 46777788999999999999999999999975 58999999997664
No 89
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=90.53 E-value=0.16 Score=38.35 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.7
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEccCCCeeeCCCeEEEEEeC
Q 019331 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (342)
Q Consensus 89 ~~~~i~mP~lGe~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (342)
...+|.-| .+|+|.++++++||.|..|++|+.|+.+
T Consensus 38 ~~~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 45677777 6799999999999999999999999864
No 90
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=90.49 E-value=0.18 Score=44.69 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=36.4
Q ss_pred ccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEE--------------------------Ee--eeCCCCEecCCCeEEE
Q 019331 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ--------------------------NL--IAKEGETVEPGAKIAV 163 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~--------------------------~i--~~~~G~~v~vG~~la~ 163 (342)
+++|+.|+.||+|+ -| ..|-|..+|+|. .+ ++++||.|..|+.|+.
T Consensus 85 V~dG~~V~~GdvLA---Kd---~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---KN---EEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS---TT---SCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe---cC---CeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 79999999999999 33 445688888874 23 7888899999998874
No 91
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=89.38 E-value=0.34 Score=42.69 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=37.7
Q ss_pred EEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEe
Q 019331 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV 155 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v 155 (342)
..+|++||.|++||.|||. |..+..|-+.++|+|.=--+-+|.++
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~ 107 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 107 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence 5699999999999999977 89999999999999965555555443
No 92
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=89.33 E-value=0.11 Score=49.34 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=41.6
Q ss_pred cCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+.|+.-..-..-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 13 ~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 13 KRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 334443334445566643 466899999999999999999999999999999864
No 93
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=88.47 E-value=0.4 Score=50.10 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.6
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
...|.||..|+|.++++++||.|..|++|++|+...
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 647 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK 647 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence 456999999999999999999999999999998643
No 94
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=88.36 E-value=0.08 Score=39.56 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 138 ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+..+|+|.++++++||.|..|++|+.|+..
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence 357899999999999999999999999754
No 95
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=84.43 E-value=0.81 Score=50.64 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=32.4
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||..|+|.++++++||.|+.|++|+.|+...
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 57999999999999999999999999999998643
No 96
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=84.02 E-value=0.84 Score=50.89 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=32.9
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
...|.||..|+|.++++++||.|+.|++|++|+...
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence 456999999999999999999999999999998643
No 97
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=83.39 E-value=0.63 Score=48.98 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=32.3
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
..|.||..|+|.++++++||.|+.|++|+.|+...
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMK 684 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEeccc
Confidence 57999999999999999999999999999998643
No 98
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=82.53 E-value=0.54 Score=45.32 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=13.0
Q ss_pred ccCCCeeeCCCeEE
Q 019331 112 KQPGDRVEMDEPIA 125 (342)
Q Consensus 112 v~~Gd~V~~gd~l~ 125 (342)
+++||.|+.||+|+
T Consensus 125 v~~g~~v~~G~vla 138 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS 138 (352)
T ss_dssp CCTTCEECTTCBSB
T ss_pred cCCCCEEccCcEEe
Confidence 78999999999888
No 99
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=82.17 E-value=0.7 Score=39.40 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=36.9
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCce---------eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEE
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV---------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa---------~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i 164 (342)
+|.=-+.+|++||+|++||+|+++.-++. -+-+.. .+ +..+....+..+..|+.|..+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCCEEEEe
Confidence 45556789999999999999999986532 122222 11 112333345667778877765
No 100
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=78.92 E-value=0.4 Score=50.01 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=0.0
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.-.|.||..|+|.++++++||.|..|++|++|+..
T Consensus 602 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 636 (675)
T 3u9t_A 602 QGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAM 636 (675)
T ss_dssp -----------------------------------
T ss_pred CCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 35689999999999999999999999999999854
No 101
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=78.59 E-value=1.6 Score=41.80 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=39.3
Q ss_pred EccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.++.|+.|++||+|+++- | .+|.+|++|.+.- .. .-.|..|+.++.+..+
T Consensus 280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVCE 329 (350)
T ss_dssp TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEEE
T ss_pred cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEEE
Confidence 367899999999999994 4 6889999998743 33 5688999988877643
No 102
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=78.11 E-value=2.4 Score=47.41 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=27.0
Q ss_pred EEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEE
Q 019331 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~ 145 (342)
..+|++||.|++||.||+. |--+..|-+.++|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 5689999999999999987 4556666666666553
No 103
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=78.07 E-value=1.4 Score=48.84 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=28.4
Q ss_pred eeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 134 ~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
..|.||..|+|.++++++||.|+.|++|+.|+..
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEam 1129 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAM 1129 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC-
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcc
Confidence 5799999999999999999999999999999853
No 104
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=77.48 E-value=0.47 Score=46.88 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=0.0
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
.+|+|.++++++||.|..|++|+.|+.+..
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 689999999999999999999999997643
No 105
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=75.90 E-value=1.5 Score=38.49 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.2
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
|+=-+++|++||+|++||+|+++.-++
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CccceEEEeCcCEEcCCCEEEEECHHH
Confidence 445688999999999999999998654
No 106
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=73.20 E-value=3.8 Score=35.03 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.0
Q ss_pred EEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
=-+.+|++||+|++||+|+++.-++
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFDLPL 119 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEECHHH
T ss_pred ccEEEEeCcCEECCCCEEEEECHHH
Confidence 3456999999999999999998653
No 107
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=71.77 E-value=0.8 Score=41.47 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=0.0
Q ss_pred CCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 139 PQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 139 p~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
-.+|.|.++++++||.|..|++|+.|+..
T Consensus 15 m~eG~I~~w~vk~Gd~V~~Gd~L~~iEtd 43 (229)
T 1zy8_K 15 MEEGNIVKWLKKEGEAVSAGDALCEIETD 43 (229)
T ss_dssp -----------------------------
T ss_pred CCcEEEEEEecCCCCEeCCCCEEEEEecC
Confidence 46899999999999999999999999854
No 108
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=68.30 E-value=3.5 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.8
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
--++|++++||.|++||+|++++-
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEEE
Confidence 346899999999999999999884
No 109
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=66.64 E-value=4 Score=37.62 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=19.0
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|.+++|+.|.+||+|++|+-
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 5789999999999999998884
No 110
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=66.24 E-value=3.4 Score=38.55 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.5
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++||.|++||+|++++-
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEE
Confidence 6899999999999999998883
No 111
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=65.45 E-value=3.2 Score=38.74 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.3
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++||.|++||+|++++-
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEE
Confidence 5788888888888888888873
No 112
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=65.35 E-value=3.6 Score=38.45 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=18.8
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++|+.|++||+|++++-
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 4789999999999999988873
No 113
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=64.44 E-value=4.1 Score=38.36 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=30.4
Q ss_pred ccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcc-chHHHHHHHHHHHHhhCCcceeE
Q 019331 264 FALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKL-GLMSGFVKAAVSALQHQPVVNAV 320 (342)
Q Consensus 264 iPh~t~~~EvDvt~L~~lR~~lk~~~~~~~gvKl-S~~~fiiKAva~AL~~~P~lNas 320 (342)
.|+ ...||.++.|.++++.+... ...+.| .|.+=-+|.++.-++....+-++
T Consensus 205 ~p~--~kIeVEv~tl~e~~eAl~aG---aDiImLDn~s~~~l~~av~~~~~~v~leaS 257 (300)
T 3l0g_A 205 LKN--EYIAIECDNISQVEESLSNN---VDMILLDNMSISEIKKAVDIVNGKSVLEVS 257 (300)
T ss_dssp SSS--CCEEEEESSHHHHHHHHHTT---CSEEEEESCCHHHHHHHHHHHTTSSEEEEE
T ss_pred CCC--CCEEEEECCHHHHHHHHHcC---CCEEEECCCCHHHHHHHHHhhcCceEEEEE
Confidence 464 35677777888888777532 122333 45555666666667655555444
No 114
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=63.42 E-value=4.1 Score=38.28 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=16.8
Q ss_pred EEEEccCCCeeeCCCeEEEEE
Q 019331 108 AKFLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~eve 128 (342)
++|++++|+.|.+||+|++|+
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 468888888888888888777
No 115
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=62.83 E-value=4.3 Score=38.02 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
-++|++++|+.|.+||+|++|+-
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 46899999999999999999984
No 116
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=62.75 E-value=4.3 Score=38.55 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=18.7
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
-++|++++|+.|.+||+|++|+-
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 35788888888888888888873
No 117
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=62.71 E-value=11 Score=33.93 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=34.0
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---e-eeeeeCCCCeEEEEeeeCCCCEecCCCeEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---V-TIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---a-~~ei~ap~~G~l~~i~~~~G~~v~vG~~la 162 (342)
..|+|.++..++ +|.-...|++.. . +-.|++- .++++.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~e-----kgg~~vtI~~~~~G~~v~~~iP~G-----peLiV~~G~~v~~~qpLT 228 (252)
T 1hcz_A 175 AGGIISKILRKE-----KGGYEITIVDASNERQVIDIIPRG-----LELLVSEGESIKLDQPLT 228 (252)
T ss_dssp SCEEEEEEEECT-----TSCEEEEEEETTTTEEEEEEECTT-----CCBCCCTTCEECTTCBSB
T ss_pred CCcEEEEEEEcC-----CCCEEEEEecCCCCCEEEEecCCC-----CeEEEecCCEEecCCccc
Confidence 458888877653 466677777654 2 2334442 167899999999999874
No 118
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=62.48 E-value=2.5 Score=35.13 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=26.4
Q ss_pred eeCCCCeEEEEeee-CCCCEecCCCeEEEEecCC
Q 019331 136 VASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 136 i~ap~~G~l~~i~~-~~G~~v~vG~~la~i~~~~ 168 (342)
+.+|.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K 72 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIESVK 72 (136)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESS
T ss_pred hhcccCCCcEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 44566677777766 9999999999999998543
No 119
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=60.94 E-value=5.3 Score=39.46 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCeEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
++-+.=+.++++.||.|++||+|+.|-++.
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 333333677888888888888888887764
No 120
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=60.81 E-value=7.5 Score=36.69 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=29.8
Q ss_pred eeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
.+.-|.||.+|++. -.++.||.|+.|++|+.|.+.
T Consensus 256 ~~~~v~A~~~Gl~~-~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 256 GDCYLFSEHDGLFE-IMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp SCCCEECSSCEEEE-ESSCTTCEECTTCEEEEEECS
T ss_pred CcEEEeCCCCeEEE-EcCCCCCEEcCCCEEEEEEcC
Confidence 34557899999885 479999999999999999874
No 121
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=60.76 E-value=5.2 Score=39.38 Aligned_cols=27 Identities=41% Similarity=0.617 Sum_probs=19.7
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+.=+.++++.||.|++||+|+.|-++.
T Consensus 367 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 367 GVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp TCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 333567888888888888888887664
No 122
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=60.73 E-value=6.3 Score=37.84 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=29.3
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
..-+.||.+|++. ..++.||.|+.|++|+.|.+
T Consensus 290 ~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 3457899999995 78999999999999999986
No 123
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=60.26 E-value=3.3 Score=35.48 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.3
Q ss_pred eEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
.|.=-+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 4555677999999999999999998654
No 124
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=58.28 E-value=4.8 Score=37.66 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=18.0
Q ss_pred EEEEccCCCeeeCCCeEEEEEe
Q 019331 108 AKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (342)
++|++++|+.|.+||+|++|+-
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 4688888888888888888873
No 125
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=58.08 E-value=6.6 Score=39.25 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
+.=+.++++.||.|++||+|+.|-++.
T Consensus 410 ~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 410 GVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCceEEEccCCCEECCCCeEEEEEcCC
Confidence 334678888888888888888887664
No 126
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=57.73 E-value=5.9 Score=39.13 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred CCeEEEEEEEccCCCeeeCCCeEEEEEeCce
Q 019331 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (342)
++-+.=+.++++.||.|++||+|++|-.++.
T Consensus 375 id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~ 405 (436)
T 3h5q_A 375 IDLAVGIVLNKKIGDKVEEGESLLTIHSNRQ 405 (436)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEESSS
T ss_pred CCCCCceEEecCCcCEeCCCCeEEEEeCChH
Confidence 3334445778888888888888887774443
No 127
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=52.76 E-value=25 Score=31.73 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=32.4
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce---eeeeeCCCCeEEEEeeeCCCCEecCCCeEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV---TIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa---~~ei~ap~~G~l~~i~~~~G~~v~vG~~la 162 (342)
..|+|.++..-.. ++|.-...|++..- +-.|++- .++++.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~G-----p~LiV~~G~~v~~~qpLT 229 (251)
T 1e2w_A 175 AAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPAG-----PDLIVKEGQTVQADQPLT 229 (251)
T ss_dssp SCEEEEEEEESSS---SSCCEEEEEECTTSCEEEEEECSS-----SCBCCCTTCEECTTCBCB
T ss_pred CCeEEEEEeeccc---CCCCEEEEEEcCCCCEEEEecCCC-----CeEEEecCCEEecCCccc
Confidence 4577777765211 24666667766542 2234432 157899999999999875
No 128
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=52.35 E-value=4.6 Score=33.24 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=26.5
Q ss_pred eeCCCCeEEEEeee-CCCCEecCCCeEEEEecCC
Q 019331 136 VASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 136 i~ap~~G~l~~i~~-~~G~~v~vG~~la~i~~~~ 168 (342)
+..+.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K 63 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVK 63 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESS
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEecc
Confidence 34566677878877 9999999999999998643
No 129
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=52.30 E-value=5.5 Score=39.43 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCeEEEEEEEccCCCeeeCCCeEEEEEeCc
Q 019331 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (342)
++-+.=+.++++.||.|++||+|+.|-++.
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 333444677888888888888888888764
No 130
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=50.70 E-value=20 Score=33.86 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=31.4
Q ss_pred EeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 128 ETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 128 etdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+..+...-+.|+..|.+ +..++.|+.|+.|++|+.|.+.
T Consensus 262 ~~~~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 262 MVREADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp ECCCGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEECT
T ss_pred eecCCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEECC
Confidence 33345566889999976 5668899999999999999864
No 131
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=48.94 E-value=16 Score=32.87 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=29.7
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCc---eeeeeeCCCCeEEEEeeeCCCCEecCCCeEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---VTIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---a~~ei~ap~~G~l~~i~~~~G~~v~vG~~la 162 (342)
..|+|.++..++ |.-...|++.. .+-.|++- .++++.+||.|+.|++|-
T Consensus 177 ~~G~i~~I~~~e------gg~~vtI~~~~G~~v~~~iP~G-----p~LiV~~G~~v~~~qpLT 228 (249)
T 2jxm_B 177 IAGTIAAIEDNG------FGFDVTIQPEDGDAVVTSILPG-----PELIVAVGDTVEAGQLLT 228 (249)
T ss_dssp SCEEEEEECCSS------SEEEEEEECTTSCCEEEEECSS-----SCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEEeCC------CcEEEEEECCCCCEEEEecCCC-----CeEEEecCCEEecCCccc
Confidence 456777766643 34445555542 22234432 157899999999999874
No 132
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=47.87 E-value=24 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.407 Sum_probs=34.9
Q ss_pred EEeCceeeeeeCCCCeEEE-----------------------------EeeeCCCCEecCCCeEEEEecCCc
Q 019331 127 IETDKVTIDVASPQAGVIQ-----------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 127 vetdKa~~ei~ap~~G~l~-----------------------------~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
+-.-+...+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 4456778888999999883 467889999999999999986543
No 133
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=47.60 E-value=6.3 Score=32.29 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=24.8
Q ss_pred eCCCCeEEEEeee-CCCCEecCCCeEEEEecCC
Q 019331 137 ASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 137 ~ap~~G~l~~i~~-~~G~~v~vG~~la~i~~~~ 168 (342)
..+.-|-|..+.+ ++|+.|..|+.|+.|+...
T Consensus 31 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 63 (128)
T 1onl_A 31 AQDALGDVVYVELPEVGRVVEKGEAVAVVESVK 63 (128)
T ss_dssp HHHHHCSEEEEECBCTTCEECTTCEEEEEEESS
T ss_pred HhhcCCCceEEEecCCCCEEeCCCEEEEEEEcc
Confidence 3455566767766 9999999999999998543
No 134
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=47.17 E-value=29 Score=31.87 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=32.2
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce---eeeeeCCCCeEEEEeeeCCCCEecCCCeEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV---TIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa---~~ei~ap~~G~l~~i~~~~G~~v~vG~~la 162 (342)
..|+|.++..-.. ++|.-...|++..- +-.|++- .++++.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~G-----peLiV~eG~~v~~~qpLT 229 (292)
T 1q90_A 175 AAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPAG-----PDLIVKEGQTVQADQPLT 229 (292)
T ss_dssp SSEEEEEEEECCT---TTCCEEEEEECSSSCEEEEEECSS-----SCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEeeccc---CCCceEEEEEcCCCCEEEEecCCC-----CeEEEecCCEEecCCccc
Confidence 4577777766211 14666666765442 2234432 157899999999999874
No 135
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=46.65 E-value=24 Score=31.81 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=32.5
Q ss_pred CeEEEEEEEccCCCeeeCCCeEEEEEeCce--ee-eeeCCCCeEEEEeeeCCCCEecCCCeEE
Q 019331 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--TI-DVASPQAGVIQNLIAKEGETVEPGAKIA 162 (342)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--~~-ei~ap~~G~l~~i~~~~G~~v~vG~~la 162 (342)
..|+|.++..++ +|.-...|++..- .. .|++- .++++.+||.|+.|++|-
T Consensus 176 ~~G~I~~I~~~e-----kgg~~vtI~~~~G~~v~~~iP~G-----p~LiV~~G~~v~~~qpLT 228 (249)
T 1ci3_M 176 AAGVITAIAKAD-----DGSAEVKIRTEDGTTIVDKIPAG-----PELIVSEGEEVAAGAALT 228 (249)
T ss_dssp SCEEEEEEEECT-----TSCEEEEEECTTSCEEEEEECSS-----SCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC-----CeEEEecCCEEecCCccc
Confidence 457777777642 4666667765433 22 33332 157899999999999874
No 136
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=45.86 E-value=8.2 Score=33.42 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=13.0
Q ss_pred eeCCCCEecCCCeEEEEec
Q 019331 148 IAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 148 ~~~~G~~v~vG~~la~i~~ 166 (342)
.+++||.|+.|++|+.+..
T Consensus 86 ~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCCTTCEECTTCEEEEECS
T ss_pred ccCCCCEEcCCCEEEeecC
Confidence 4667777777777777664
No 137
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=44.37 E-value=8.3 Score=31.54 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=25.0
Q ss_pred eCCCCeEEEEeee-CCCCEecCCCeEEEEecCC
Q 019331 137 ASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 137 ~ap~~G~l~~i~~-~~G~~v~vG~~la~i~~~~ 168 (342)
..+.-|-|..+.+ ++|+.|..|++|+.|+...
T Consensus 32 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 64 (128)
T 3a7l_A 32 AQELLGDMVFVDLPEVGATVSAGDDCAVAESVK 64 (128)
T ss_dssp HHHHHCSEEEEECCCTTCEECTTCEEEEEEESS
T ss_pred HhccCCceEEEEecCCCCEEeCCCEEEEEEecc
Confidence 3455576777766 8999999999999998543
No 138
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=44.35 E-value=9.5 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.5
Q ss_pred EEEEccCCCeeeCC------CeEEEEE
Q 019331 108 AKFLKQPGDRVEMD------EPIAQIE 128 (342)
Q Consensus 108 ~~w~v~~Gd~V~~g------d~l~eve 128 (342)
++|++++|+.|.+| |+|++|+
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~ 95 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEE
Confidence 56889999999998 8877777
No 139
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=43.00 E-value=32 Score=33.80 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=32.5
Q ss_pred EeCceeeeeeCCCCeEEE-------------------------------EeeeCCCCEecCCCeEEEEecCCc
Q 019331 128 ETDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 128 etdKa~~ei~ap~~G~l~-------------------------------~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..-+...+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 445667777777777774 467788999999999999986544
No 140
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=42.96 E-value=46 Score=28.60 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEEccCCCeeeCCCeEEEEEe
Q 019331 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (342)
-+.++.|++||.|++||+|..+..
T Consensus 81 HL~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 81 HMDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SEESCCCCTTCEECTTCEEEEECS
T ss_pred cCCccccCCCCEEcCCCEEEeecC
Confidence 345667888999999999888874
No 141
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.65 E-value=31 Score=33.86 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=31.8
Q ss_pred EeCceeeeeeCCCCeEEE-------------------------------EeeeCCCCEecCCCeEEEEecCCc
Q 019331 128 ETDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 128 etdKa~~ei~ap~~G~l~-------------------------------~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..-+ ..+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 323 ~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 323 PLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 4456 7777788887774 467788999999999999986544
No 142
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=36.76 E-value=16 Score=33.91 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=15.4
Q ss_pred eeeCCCCEecCCCeEEEEecCC
Q 019331 147 LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.+++||.|+.|++|+.+...+
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~tG 253 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGATG 253 (282)
T ss_dssp ECSCTTCEECTTCEEEECCCTT
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 4567777777777777776543
No 143
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=36.63 E-value=15 Score=33.33 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=12.1
Q ss_pred EEEEEccCCCeeeCCCeEEEEEe
Q 019331 107 LAKFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (342)
+.++.|++||.|++||+|..+-.
T Consensus 132 L~~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 132 LSEVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp ESEESCCTTCEECTTCEEEECBC
T ss_pred CCccccCCCCEECCCCEEEEeCC
Confidence 33445555555555555555543
No 144
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=35.32 E-value=17 Score=33.93 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.8
Q ss_pred eeeCCCCEecCCCeEEEEecCC
Q 019331 147 LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.|++|+.|..|++|+.+...+
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 5788999999999999887554
No 145
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=33.92 E-value=29 Score=34.16 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=31.8
Q ss_pred EeCceeeeeeCCCCeEEE-------------------------------EeeeCCCCEecCCCeEEEEecCCc
Q 019331 128 ETDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (342)
Q Consensus 128 etdKa~~ei~ap~~G~l~-------------------------------~i~~~~G~~v~vG~~la~i~~~~~ 169 (342)
..-+...+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 345566677777777774 367788999999999999986544
No 146
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=32.73 E-value=5.7 Score=30.31 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred EccCCCeeeCCCeEE
Q 019331 111 LKQPGDRVEMDEPIA 125 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~ 125 (342)
+|++||.|++||.|.
T Consensus 68 ~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 68 NVFEGERVERGDVIS 82 (84)
T ss_dssp SSCTTEEECBSCSSB
T ss_pred EeCCCCEECCCCCcc
Confidence 599999999999875
No 147
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=32.61 E-value=82 Score=32.28 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=40.2
Q ss_pred ccCCCeeeCCCeEEEEEeCce-eeee--eCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 112 KQPGDRVEMDEPIAQIETDKV-TIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa-~~ei--~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+++||.|..||++.+|.-... ...| +....|+|+.| .+| ...+-++++.++..
T Consensus 131 ~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g-~~~v~~~v~~i~~~ 186 (600)
T 3vr4_A 131 IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG-SFTIDDPICVIETE 186 (600)
T ss_dssp SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE-EECTTSCCEEEEET
T ss_pred cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC-cceeceeEEEEecc
Confidence 799999999999999875432 3333 55578999887 555 56788899988753
No 148
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=30.93 E-value=63 Score=27.66 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=31.2
Q ss_pred eeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecCC
Q 019331 117 RVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 117 ~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+++|+-|+.++. +|+-.-+.+.+|+.|..|+.||.+.+..
T Consensus 95 ~lkkGt~L~lvpa-----------eG~~V~~i~~~G~rV~kgd~lA~i~T~K 135 (169)
T 3d4r_A 95 YLKAGTKLISVPA-----------EGYKVYPIMDFGFRVLKGYRLATLESKK 135 (169)
T ss_dssp EECTTCBCEEEEE-----------CSSEEEECCCCSEEECTTCEEEEEECTT
T ss_pred EEcCCCEEEEEEe-----------CceEEEEEcCcCcEeccCCeEEEEEecC
Confidence 3456667777764 4555577889999999999999998644
No 149
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=30.37 E-value=22 Score=32.29 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=15.0
Q ss_pred eeCCCCEecCCCeEEEEecCC
Q 019331 148 IAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 148 ~~~~G~~v~vG~~la~i~~~~ 168 (342)
.+++||.|..|++|+.+...+
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~tG 203 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGDSG 203 (252)
T ss_dssp SCCTTCEECTTCEEEECBCCC
T ss_pred cCCCCCEECCCCEEEEECCCC
Confidence 567777777777777776544
No 150
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=28.44 E-value=33 Score=29.84 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.4
Q ss_pred EeeeCCCCEecCCCeEEEEec
Q 019331 146 NLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 146 ~i~~~~G~~v~vG~~la~i~~ 166 (342)
+.++++||.|+.|++|+.++.
T Consensus 119 ~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 119 TRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp EECSCTTCEECTTCEEEEECH
T ss_pred eEEEeCcCEEcCCCEEEEECH
Confidence 457889999999999999974
No 151
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=28.43 E-value=63 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.8
Q ss_pred eeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
..-+.|+..|.+. -.++.|+.|+.|++|+.+.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECC
Confidence 3457899999886 678889999999999999763
No 152
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=28.37 E-value=78 Score=28.57 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCeEEEEEEEccCCCeeeCCCeEEEEEeCceeeeeeCCCCeEEEEeeeCCCCEecCCCeEEEEecC
Q 019331 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (342)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~~G~~v~vG~~la~i~~~ 167 (342)
+..|+|+.+-...| .--.+.|+...-...+- +-|.++.|++|+.|..|++|+.+...
T Consensus 99 ~~~G~V~~~g~~~~-----~G~~ViI~Hg~G~~t~Y----~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 99 SLSGTVVKAEKDPV-----LGYVVEVEHADGLSTVY----QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp SSCEEEEEEEEETT-----TEEEEEEECSTTEEEEE----EEESEESCCTTCEECTTCEEEECBCC
T ss_pred CcCeEEEEEEecCC-----CceEEEEEeCCCEEEEE----ecCCccccCCCCEECCCCEEEEeCCc
Confidence 46788887765433 22345555543332222 33557889999999999999999865
No 153
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=27.40 E-value=77 Score=21.68 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhCCcceeEEeCCeEEE
Q 019331 299 LMSGFVKAAVSALQHQPVVNAVIDGDDIIY 328 (342)
Q Consensus 299 ~~~fiiKAva~AL~~~P~lNas~d~~~Iv~ 328 (342)
|.++++|.. |-.-|-.+|..||+|.+..
T Consensus 19 faailikvf--aelgyndinvtwdgdtvtv 46 (62)
T 2gjh_A 19 FAAILIKVF--AELGYNDINVTWDGDTVTV 46 (62)
T ss_dssp HHHHHHHHH--HHTTCCSCEEEECSSCEEE
T ss_pred HHHHHHHHH--HHhCcccceeEEcCCEEEE
Confidence 667777754 3457899999999987653
No 154
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=26.81 E-value=28 Score=33.02 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=18.3
Q ss_pred eeeCCCCEecCCCeEEEEecCC
Q 019331 147 LIAKEGETVEPGAKIAVISKSG 168 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~~~~ 168 (342)
+.+++|+.|..|++|+.+...+
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~tg 305 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGATG 305 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 5788999999999999987654
No 155
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=26.71 E-value=1.3e+02 Score=30.73 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=38.1
Q ss_pred EccCCCeeeCCCeEEEEEeCc-eeeee--eCCCCeEEEEeeeCCCCEecCCCeEEEEec
Q 019331 111 LKQPGDRVEMDEPIAQIETDK-VTIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK-a~~ei--~ap~~G~l~~i~~~~G~~v~vG~~la~i~~ 166 (342)
.+++||.|..||++.+|.-.. ....| +....|.|..| +.+| ...+-+.++.++.
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i-~~~g-~~~v~~~i~~i~~ 179 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI-AEEG-DYTIEEVIAKVKT 179 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE-CCSE-EECTTSEEEEEEC
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe-ccCC-cccccceEEEEec
Confidence 378999999999999986432 33333 55678988775 2344 4577788888874
No 156
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=26.40 E-value=73 Score=31.31 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=17.2
Q ss_pred eeeCCCCEecCCCeEEEEe
Q 019331 147 LIAKEGETVEPGAKIAVIS 165 (342)
Q Consensus 147 i~~~~G~~v~vG~~la~i~ 165 (342)
++.+.||.|..|++|+.|-
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 4667999999999999998
No 157
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=26.38 E-value=17 Score=34.21 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=14.8
Q ss_pred EEEccCCCeeeCCCeEEEEEe
Q 019331 109 KFLKQPGDRVEMDEPIAQIET 129 (342)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evet 129 (342)
++.|++||.|++||+|..+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 345777777777777777664
No 158
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=25.96 E-value=14 Score=34.93 Aligned_cols=35 Identities=11% Similarity=-0.088 Sum_probs=23.1
Q ss_pred EccCCCeeeCCCeEEEEEeCc-----eeeeeeCCCCeEEE
Q 019331 111 LKQPGDRVEMDEPIAQIETDK-----VTIDVASPQAGVIQ 145 (342)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK-----a~~ei~ap~~G~l~ 145 (342)
.++.|+.|++||+|+++-.-. ...+|.+|.+|+|.
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 358899999999999876432 34568889999873
No 159
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=23.61 E-value=1.8e+02 Score=23.03 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=18.1
Q ss_pred CCCeEEEEEEEccCCCeeeCCCeEE
Q 019331 101 SITDGTLAKFLKQPGDRVEMDEPIA 125 (342)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~ 125 (342)
...+|+|++..-+.|..|.+|..|.
T Consensus 41 ~~~~g~Vi~q~P~~G~~v~~g~~V~ 65 (139)
T 2kuf_A 41 PRPAGEVTGTNPPAGTTVPVDSVIE 65 (139)
T ss_dssp SSCTTEEEEESSCTTEEEETTSEEE
T ss_pred CCCCCEEEEEcCCCCCCccCCCEEE
Confidence 3456777777777788887777665
No 160
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=22.44 E-value=42 Score=29.09 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.7
Q ss_pred EEccCCCeeeCCCeEEEEE
Q 019331 110 FLKQPGDRVEMDEPIAQIE 128 (342)
Q Consensus 110 w~v~~Gd~V~~gd~l~eve 128 (342)
..|++||.|++||+|+.+-
T Consensus 168 i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 168 VQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp ESSCTTCEECTTCEEEEEE
T ss_pred EEEcCCCEEcCCCEEEEcc
Confidence 3477777888888777764
No 161
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=20.94 E-value=2e+02 Score=22.79 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=19.5
Q ss_pred CCe--EEEEEEEccCCCeeeCCCeEEEE
Q 019331 102 ITD--GTLAKFLKQPGDRVEMDEPIAQI 127 (342)
Q Consensus 102 m~e--g~I~~w~v~~Gd~V~~gd~l~ev 127 (342)
..+ |+|++..-+.|..|.+|+.|.-+
T Consensus 41 ~~~~~g~Vi~q~P~~G~~v~~g~~V~l~ 68 (138)
T 2kue_A 41 TPELVGKVIGTNPPANQTSAITNVVIII 68 (138)
T ss_dssp CGGGTTSEEEESSCSSSEEETTSCEEEE
T ss_pred CCccCCEEEEecCCCCCCcCCCCEEEEE
Confidence 345 88888888888888888776643
No 162
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.14 E-value=1.7e+02 Score=19.64 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhCCCccchHHHHHHHHHHHHhhCCccee
Q 019331 280 KLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (342)
Q Consensus 280 ~lR~~lk~~~~~~~gvKlS~~~fiiKAva~AL~~~P~lNa 319 (342)
++.++++..+. .. ..|++.++..++..+|.+--.+|+
T Consensus 17 eL~~~l~~~A~-~~--grS~N~~i~~~L~~~l~~~~r~~~ 53 (53)
T 1baz_A 17 EVLDLVRKVAE-EN--GRSVNSEIYQRVMESFKKEGRIGA 53 (53)
T ss_dssp HHHHHHHHHHH-HT--TCCHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHH-Hc--CCCHHHHHHHHHHHHHhhccccCC
Confidence 34444444333 22 479999999999999987666653
Done!